Psyllid ID: psy5670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------127
Protein Sequence
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHNNTSQEKIPGMGISS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccccHHHccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHccccccccEEEccccccccccHHccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccEEEEcccccccccEEEccccccccccccHHHHHHHHHHcccccccccccEEccccccccEEcEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHcccccEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccEEEccccccccccccHHHHHccEEEccccccccccccccccccccccEEEEEccccccccccccHcccccHHHHHHHHHccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccHHHccccccEEEEcccccccccccHHHHHHccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHHHcEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccccccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccHcccccccEEEccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEcccHHHHHcccEEEccccccccccHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccHHcccEEEEEEccccHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHccEEEEEcHHHHHHHHcHHHHHHHHHHHHHccccEEEEEEccccHHHccHHHHHHHHcccEEEEccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MMVCPGSVFITVLISALGLVSASISKALryqapdeckwFAVTsegaeievpsaaepdQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECgdmlffqsslspgsfqtlidlkDLSVEFCKignlsagsfrglrKLKTLTLrthntdwstmsldISHNVFTDELQslesldlsmnsiwtlpdaifcplqslsyLNLTQNklsnvatfsfsnydtarcginlrvldlsnnsfdslpaegfSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVnnlvnippelfnqsrdLKEVYlqnnsinvlapGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNkmnkldssiFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNklkriesnsldslTALSVLSLDNNELEYIEENALknstslqdfhlngnklteiPKVLRNLhslktldlgdNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKiqkveagtfdnnsnLVAIrldgnyltdigglfpklpnlvWLNISENLLEWFdyalipadlqwldihgnqiselgnYFEIESQLRLTyfdassnklteltgnaiphsvenlfltnnliskvqpytffmkpnltrvdLVGNRlkninqtalrisplpshknipdfyigenpfqcdcnmqwlqsysvnkernkpnlvdldtVTCKLLYNRANPAILLKEAHSNQFlceyetncaplchccdfdacdcemtcpnnctcyhdvsweanvidcstggydnqlppripmdatelyldgnripvvgshsfigrKKLQILFLNSSHVETIHNKTFNGLKELIILRlddnrlteirGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQsitltsnpwscdcdfteKFRDYLQRsrssvhdisqircmtgsevGFTIMRTVIPScnvvstnvsshsnnnnntttttttttifipehspmngsfilselqpqqDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLfyksseiemddRDKLFDAFVSYSSKDEAFVAEELApilengdpayKLCLhyrefpvggyiGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLgevpqkdldpdirlYLKSNTYLQWGDKLFWEKLKFalpdvpnnqrnnnnrnqvrhlnhsahhhnhnhrhhqhhhnntsqekipgmgiss
Flexible Loop (DISEMBL)
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIevpsaaepdqEVALVCKLRTInseientnfsiiqAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIgnlsagsfrglrkLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQkveagtfdnnsnLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINqtalrisplpsHKNIPDFYIGENPFQCDCNMQWLQSYSVnkernkpnlVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNktfnglkeliilrlddnrlTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRsrssvhdisqirCMTGSEVGFTIMRTVIPSCNVVSTnvsshsnnnnnttttTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLgevpqkdldpdiRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRHHqhhhnntsqekipgmgiss
Low Complexity Region (SEG)
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGlrklktltlrtHNTDWSTMSLDISHNVFTdelqslesldlsMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGlnsltvlnlsvnnlvnIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCnvvstnvsshsnnnnntttttttttIFIPEHSPMNGSFILSELQPQQDYVFlliilvsasfvlvllliliiiYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVPnnqrnnnnrnqVRhlnhsahhhnhnhrhhqhhhnnTSQEKIPGMGISS
Disordered region (IsUnstruct)
**VCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEV*******QEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVS*********************************FILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALP***************************************************
Disordered Region (DISOPRED)
****PGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFAL****************************************************
Disordered Region (DISEMBL)
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHS******************************
Disordered Region (DISPRO)
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVP************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHNNTSQEKIPGMGISS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1269	2.2.26 [Sep-21-2011]
P08953	1097	Protein toll OS=Drosophil	no	N/A	0.654	0.756	0.259	2e-65
P35858	605	Insulin-like growth facto	yes	N/A	0.356	0.748	0.301	2e-37
P70389	603	Insulin-like growth facto	yes	N/A	0.338	0.711	0.301	3e-36
O88279	1531	Slit homolog 1 protein OS	yes	N/A	0.449	0.372	0.247	9e-36
Q80TR4	1531	Slit homolog 1 protein OS	no	N/A	0.438	0.363	0.244	1e-35
O75093	1534	Slit homolog 1 protein OS	no	N/A	0.468	0.387	0.24	3e-35
O02833	605	Insulin-like growth facto	N/A	N/A	0.310	0.651	0.301	1e-34
P35859	603	Insulin-like growth facto	no	N/A	0.319	0.671	0.299	4e-34
Q9HBX8	967	Leucine-rich repeat-conta	no	N/A	0.291	0.382	0.319	5e-34
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.434	0.361	0.256	1e-33

>sp|P08953|TOLL_DROME Protein toll OS=Drosophila melanogaster GN=Tl PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 265/1021 (25%), Positives = 457/1021 (44%), Gaps = 191/1021 (18%)

Query: 229  SNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPEL 288
            S+N   ++  +   RL  L+        LT +  + L  + +L+ L L  N +  +P  L
Sbjct: 134  SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHL 192

Query: 289  FNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
            F+   +L+ +   +N +  +  GIF  + +L  L+L +N+L    +    F G   ++ +
Sbjct: 193  FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHN--LTKHDFEGATSVLGI 250

Query: 349  NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK--LKRI 406
            +I  N + +L   +F  L  +  ++L  N   S+ +  F    +L+ + + NN+  L  +
Sbjct: 251  DIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATL 310

Query: 407  ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
             S    +   L +L L   EL+ +  +  ++ST + +  L  N L  +P  +L +  +L 
Sbjct: 311  PSRLFANQPELQILRL-RAELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLL 369

Query: 466  TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
            +LDL +N +T + +        L  LRL +N ++ IS  +F  L  L  L ++ N+++ +
Sbjct: 370  SLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTI 429

Query: 526  EAGTFDNNSNLVAIRLDGNYL------------TDIGGLFPKLPNLVWLNISEN--LLEW 571
            ++  F + + L  + LD N +            T I   F  +  L+ LN+  N  +  +
Sbjct: 430  DSRAFVSTNGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVY 489

Query: 572  FDYALIPADLQWLDIHGNQISELGNYFEIE--SQLRLTYFDASSNKLTELTGNAIPHSVE 629
             D+      L+ LD+  N IS LG Y ++   SQ RL + + + NK+  +   A+P  V 
Sbjct: 490  NDWKNTMLQLRELDLSYNNISSLG-YEDLAFLSQNRL-HVNMTHNKIRRI---ALPEDVH 544

Query: 630  NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
                 NN              NL  VDL                              +N
Sbjct: 545  LGEGYNN--------------NLVHVDL-----------------------------NDN 561

Query: 690  PFQCDCNMQWLQSYSVNKERNKPNLV-DLDTVTCKLLYNRANPAILLKEAHSNQFLCEYE 748
            P  CDC + W     + +  +KP         T +L+ ++ N   +L+     Q   E +
Sbjct: 562  PLVCDCTILWF--IQLVRGVHKPQYSRQFKLRTDRLVCSQPN---VLEGTPVRQI--EPQ 614

Query: 749  TNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP-----M 803
            T   PL    DF     E  CP  C C+     +A VI+C +G   +   PR+P     M
Sbjct: 615  TLICPL----DFSDDPRERKCPRGCNCHVRTYDKALVINCHSGNLTHV--PRLPNLHKNM 668

Query: 804  DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
               EL+L+ N                 +L L S++          G + +  L L  N L
Sbjct: 669  QLMELHLENN----------------TLLRLPSANTP--------GYESVTSLHLAGNNL 704

Query: 864  TEIRGYEFERLE-NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQ 922
            T I   + ++L  NL  L + +N              HL++L       T     + + +
Sbjct: 705  TSI---DVDQLPTNLTHLDISWN--------------HLQMLN-----ATVLGFLNRTMK 742

Query: 923  IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNV 982
             +S+ L+ NPW CDC   +    + Q +   + D +++ C+             +P+  V
Sbjct: 743  WRSVKLSGNPWMCDCT-AKPLLLFTQDNFERIGDRNEMMCVNAE----------MPTRMV 791

Query: 983  -VSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASF 1041
             +STN                                   ++ P +  VF+ + +V A  
Sbjct: 792  ELSTN-----------------------------------DICPAEKGVFIALAVVIALT 816

Query: 1042 VLVLLLILIIIYR--QEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFV 1099
             L+      + Y+   E+++W ++   +  F    ++   D+DK FDAF+SYS KD++F+
Sbjct: 817  GLLAGFTAALYYKFQTEIKIWLYAHNLLLWFVTEEDL---DKDKKFDAFISYSHKDQSFI 873

Query: 1100 AEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159
             + L P LE+G   ++LC+H R++ VGG+I + I+++V  SRRTI+VLS+NFIKSEW R 
Sbjct: 874  EDYLVPQLEHGPQKFQLCVHERDWLVGGHIPENIMRSVADSRRTIIVLSQNFIKSEWARL 933

Query: 1160 EFKSAHHQVL-RGKKRLIVILLGEVPQ-KDLDPDIRLYLKSNTYLQWGDKLFWEKLKFAL 1217
            EF++AH   L  G+ R+IVI+  ++   + LD +++ YLK NTYL+WGD  FW+KL+FAL
Sbjct: 934  EFRAAHRSALNEGRSRIIVIIYSDIGDVEKLDEELKAYLKMNTYLKWGDPWFWDKLRFAL 993

Query: 1218 P 1218
            P
Sbjct: 994  P 994

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Promotes heterophilic cellular adhesion. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 232/518 (44%), Gaps = 65/518 (12%)

Query: 38  WFAVTS---EGAEIEVPSAAE-PDQEVALVC-------KLRTINSEIENTNFSIIQAQYT 86
           W A+     EGA+   P  AE P    A VC       +L    S    T         T
Sbjct: 17  WVALGPRSLEGADPGTPGEAEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGT 76

Query: 87  VRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLR---------- 136
             L ++  ++    SS+ P +FQ L  L  L+++  ++G+L   +  GL           
Sbjct: 77  QALWLDGNNL----SSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERN 132

Query: 137 KLKTLTLRTHNTDWSTMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCP 189
           +L++L L T     +  SL +S+N  +       + L SL  L+L  NS+  LPDA F  
Sbjct: 133 QLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRG 192

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
           L SL  L L  N+L+ +    FS          LR LDLS N+  ++ A  F +L RLQ+
Sbjct: 193 LGSLRELVLAGNRLAYLQPALFSGL------AELRELDLSRNALRAIKANVFVQLPRLQK 246

Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNN------------------------LVNIP 285
           LYL  N++  +A  A  GL +L  L+LS N                         + ++ 
Sbjct: 247 LYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLR 306

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
           P  F     L+E+ L +N I  LA   F  L QL VL L +N+L E  V A  F GL  +
Sbjct: 307 PRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQE--VKAGAFLGLTNV 364

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            V+N++ N +  L   +F+ L +L  LHLE + +  I  +TF  LS L  L + +N L  
Sbjct: 365 AVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVG 424

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           IE  SL  L  L  L L +N+L ++     +    L+   L+ N+L E+P   L  L   
Sbjct: 425 IEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRA 484

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
             LD+  N +  + N  L  L +L  L L  N++   +
Sbjct: 485 FWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFT 522

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 224/464 (48%), Gaps = 35/464 (7%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR------------THNT 148
           SS+   +FQ L  L  L+++   + +L   +  GL+ L  L L              H  
Sbjct: 87  SSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNLLRSLAAGLFRHTP 146

Query: 149 DWSTMSLD------ISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
             +++SL       +   +F   L  L  L+L  NS+  LPD +F  L +L  L L  NK
Sbjct: 147 SLASLSLGNNLLGRLEEGLFRG-LSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNK 205

Query: 203 LSNVATFSFSNYDTARCGIN-LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLA 261
           L+ +            CG+  LR LDLS N+  S+ A  F  L RLQ+LYL  N++T +A
Sbjct: 206 LTYLQP-------ALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVA 258

Query: 262 DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
             A  G+ +L  L+LS N +  +  + F     L  + L +N+I  L P  F  L  L  
Sbjct: 259 PRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEE 318

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           L L +N + +  +   TF GL +L VL +  N+++++    F  L+ + V++L  N + S
Sbjct: 319 LQLGHNRIRQ--LGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRS 376

Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
           +  + F  L  LH+L + ++ L RI  ++   L+ L  L L +N +  IEE +L   + L
Sbjct: 377 LPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSEL 436

Query: 442 QDFHLNGNKLTEIPKVL-RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN 500
            +  L  N+LT +P+ L + L  L+ L L +N +T ++   L  L +   L L+ N +  
Sbjct: 437 LELDLTANQLTHLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHNRLET 496

Query: 501 ISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
            ++G+F  L  L  LNL +N +Q     TF     L  + LD N
Sbjct: 497 PAEGLFSSLGRLRYLNLRNNSLQ-----TFVPQPGLERLWLDAN 535

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  153 bits (387), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 163/659 (24%), Positives = 288/659 (43%), Gaps = 89/659 (13%)

Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L +  N + ++  + F  L +L+VL L  NQI ++ R  F  +  L  L ++ N+L+ + 
Sbjct: 66  LELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLP 125

Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKT 466
                +  ALS L L  N L+ +   A + +T L++  L+ N+++ I +   R L  L+ 
Sbjct: 126 ELLFQNNQALSRLDLSENSLQAVPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEV 185

Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNI--------------SNISKGVFEKLS-- 510
           L L +N IT I   S N + +L   RL  N++                 + G+F + S  
Sbjct: 186 LTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGP 245

Query: 511 -VLTILNLA-----------SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558
             L  LN+A             +  +V A T  + S           +   G     +P 
Sbjct: 246 ASLRGLNVAEVQKSEFSCSGQGEAAQVPACTLSSGSCPAMCSCSNGIVDCRGKGLTAIPA 305

Query: 559 LVWLNISENLLEWFDYALIPAD-------LQWLDIHGNQISELG-NYFE-IESQLRLTYF 609
            +   ++E  LE      IP         L+ +D+  NQI+E+  + F+ + S   L  +
Sbjct: 306 NLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLY 365

Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNL--ISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
               NK+T+L             L  N   I+ ++P  F    NL+ + L  N+++++ +
Sbjct: 366 ---GNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAK 422

Query: 668 TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYN 727
                    S + I   ++ +NPF CDCN++WL  +       + N ++     C     
Sbjct: 423 GTFT-----SLRAIQTLHLAQNPFICDCNLKWLADFL------RTNPIETTGARCASPRR 471

Query: 728 RANPAILLKEAHSNQFLC------------EYETNCAPLCHCCDFDACDCEMTCPNNCTC 775
            AN  I   +  S +F C            +Y  N            C  ++ CP+ C C
Sbjct: 472 LANKRI--GQIKSKKFRCSAKEQYFIPGTEDYHLN----------SECTSDVACPHKCRC 519

Query: 776 YHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR-KKLQILFL 834
                 EA+V++CS G   +++P RIP   TEL L+ N I ++ +     +   L+ + L
Sbjct: 520 ------EASVVECS-GLKLSKIPERIPQSTTELRLNNNEISILEATGLFKKLSHLKKINL 572

Query: 835 NSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRT 894
           +++ V  I + TF G   +  L L  N+L  +R   F  L+ LR L L+ N+I  I N +
Sbjct: 573 SNNKVSEIEDGTFEGATSVSELHLTANQLESVRSGMFRGLDGLRTLMLRNNRISCIHNDS 632

Query: 895 FLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFRDYLQRSR 951
           F  L ++++L L  N IT+ +     +   + ++ L +NP++C+C       D+L++ +
Sbjct: 633 FTGLRNVRLLSLYDNHITTISPGAFDTLQALSTLNLLANPFNCNCQLA-WLGDWLRKRK 690

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 164/671 (24%), Positives = 282/671 (42%), Gaps = 114/671 (16%)

Query: 361 SIFKDLYR-LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
           +I K++ R  + L L  N I  IH+N FA L  L  L +  N++  +E  + D +  L  
Sbjct: 54  AIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELER 113

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEIN 478
           L L+ N+L+ + E   +N+ +L    L+ N L  +P K  R    LK L L  N I+ I 
Sbjct: 114 LRLNRNQLQVLPELLFQNNQALSRLDLSENFLQAVPRKAFRGATDLKNLQLDKNRISCIE 173

Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI--------------QK 524
             +  +L  L  L L  NNI+ I    F  +  L    L SN +              Q+
Sbjct: 174 EGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQR 233

Query: 525 VEAGTFDNNSNLVAIR-------LDGNYLTDIGGLFPKLPNL--------VWLNISENLL 569
              G F   S   ++R         G +     G     P             + S  ++
Sbjct: 234 PTIGLFTQCSGPASLRGLNVAEVQKGEFSCSGQGEAAGAPACTLSSGSCPAMCSCSSGIV 293

Query: 570 EWFDYAL--IPADLQ------WLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
           +     L  IPA+L        L+++G +    G +       +L   D S+N++ E+  
Sbjct: 294 DCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYR---KLRRIDLSNNQIAEIAP 350

Query: 622 NAIP--HSVENLFLTNNLISK------------------------VQPYTFFMKPNLTRV 655
           +A     S+ +L L  N I+                         ++P  F    NL+ +
Sbjct: 351 DAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLL 410

Query: 656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLV 715
            L  N+++++ +         S + I   ++ +NPF CDCN++WL  +       + N +
Sbjct: 411 SLYDNKIQSLAKGTFT-----SLRAIQTLHLAQNPFICDCNLKWLADFL------RTNPI 459

Query: 716 DLDTVTCKLLYNRANPAILLKEAHSNQFLC------------EYETNCAPLCHCCDFDAC 763
           +     C      AN  I   +  S +F C            +Y  N            C
Sbjct: 460 ETTGARCASPRRLANKRI--GQIKSKKFRCSAKEQYFIPGTEDYHLN----------SEC 507

Query: 764 DCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSF 823
             ++ CP+ C C      EA+V++CS+    +++P RIP   TEL L+ N I ++ +   
Sbjct: 508 TSDVACPHKCRC------EASVVECSSLKL-SKIPERIPQSTTELRLNNNEISILEATGL 560

Query: 824 IGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL 882
             +   L+ + L+++ V  I + TF G   +  L L  N+L  IR   F  L+ LR L L
Sbjct: 561 FKKLSHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLML 620

Query: 883 QYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFT 940
           + N+I  I N +F  L ++++L L  N IT+ +     +   + ++ L +NP++C+C  +
Sbjct: 621 RNNRISCIHNDSFTGLRNVRLLSLYDNHITTISPGAFDTLQALSTLNLLANPFNCNCHLS 680

Query: 941 EKFRDYLQRSR 951
               D+L++ +
Sbjct: 681 -WLGDWLRKRK 690

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 174/725 (24%), Positives = 293/725 (40%), Gaps = 131/725 (18%)

Query: 361 SIFKDLYR-LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
           +I K++ R  + L L  N I  IH+N FA L  L  L +  N++  +E  + D +  L  
Sbjct: 54  AIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELER 113

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEIN 478
           L L+ N+L  + E   +N+ +L    L+ N +  IP K  R    LK L L  N I+ I 
Sbjct: 114 LRLNRNQLHMLPELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIE 173

Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI--------------QK 524
             +  +L  L  L L  NNI+ I    F  +  L    L SN +              Q+
Sbjct: 174 EGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQR 233

Query: 525 VEAGTFDNNSNLVAIR-------LDGNYLTDIGGLFPKLPNL--------VWLNISENLL 569
              G F   S   ++R           +     G   ++P               S  ++
Sbjct: 234 PTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIV 293

Query: 570 EWFDYAL--IPADLQ------WLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
           +     L  IPA+L        L+++G +    G +       +L   D S+N++ E+  
Sbjct: 294 DCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYR---KLRRIDLSNNQIAEIAP 350

Query: 622 NAIP--HSVENLFLTNNLISK------------------------VQPYTFFMKPNLTRV 655
           +A     S+ +L L  N I+                         ++P  F    NL+ +
Sbjct: 351 DAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLL 410

Query: 656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLV 715
            L  N+++++ +         S + I   ++ +NPF CDCN++WL  +       + N +
Sbjct: 411 SLYDNKIQSLAKGTFT-----SLRAIQTLHLAQNPFICDCNLKWLADFL------RTNPI 459

Query: 716 DLDTVTCKLLYNRANPAILLKEAHSNQFLC------------EYETNCAPLCHCCDFDAC 763
           +     C      AN  I   +  S +F C            +Y+ N            C
Sbjct: 460 ETSGARCASPRRLANKRI--GQIKSKKFRCSAKEQYFIPGTEDYQLN----------SEC 507

Query: 764 DCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSF 823
           + ++ CP+ C C      EANV++CS+     ++P RIP    EL L+ N I ++ +   
Sbjct: 508 NSDVVCPHKCRC------EANVVECSSLKL-TKIPERIPQSTAELRLNNNEISILEATGM 560

Query: 824 IGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL 882
             +   L+ + L+++ V  I +  F G   +  L L  N+L  IR   F  L+ LR L L
Sbjct: 561 FKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLML 620

Query: 883 QYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDF- 939
           + N+I  I N +F  L ++++L L  N+IT+ +     +   + ++ L +NP++C+C   
Sbjct: 621 RNNRISCIHNDSFTGLRNVRLLSLYDNQITTVSPGAFDTLQSLSTLNLLANPFNCNCQLA 680

Query: 940 ------------TEKFR----DYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPS-CNV 982
                       T   R    D+L++           RC  G E G  + R   P  C  
Sbjct: 681 WLGGWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECAC 740

Query: 983 VSTNV 987
           + T V
Sbjct: 741 LDTVV 745

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 207/444 (46%), Gaps = 50/444 (11%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLR----------KLKTLTLRTHNTDW 150
           SS+ P +F+ L  L  L+++  ++G+L   +  GL           +L++L + T     
Sbjct: 87  SSIPPAAFRNLSSLAFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLAVGTFAYTP 146

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           +   L +S+N  +       + L +L  L+L  NS+  LPDA F  L  L  L L  N+L
Sbjct: 147 ALALLGLSNNRLSRLEDGLFEGLGNLWDLNLGWNSLAVLPDAAFRGLGGLRELVLAGNRL 206

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH 263
           + +    FS          LR LDLS N+  ++ A  F++L RLQ+LYL  N++  +A  
Sbjct: 207 AYLQPALFSGL------AELRELDLSRNALRAIKANVFAQLPRLQKLYLDRNLIAAVAPG 260

Query: 264 ALDGLNSLTVLNLSVNN------------------------LVNIPPELFNQSRDLKEVY 299
           A  GL +L  L+LS N                         + ++ P  F     L+E+ 
Sbjct: 261 AFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFLEELQ 320

Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           L +N I  LA   F  L QL VL L +N+L E  V    F GL  + V+N++ N +  L 
Sbjct: 321 LGHNRIRQLAERSFEGLGQLEVLTLDHNQLQE--VKVGAFLGLTNVAVMNLSGNCLRNLP 378

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
             +F+ L +L  LHLE + +  I  +TFA LS L  L + +N L  IE  SL  L  L  
Sbjct: 379 EQVFRGLGKLHSLHLEGSCLGRIRPHTFAGLSGLRRLFLKDNGLVGIEEQSLWGLAELLE 438

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEIN 478
           L L +N+L ++     +    L+   L+ N+L E+P   L  L     LD+  N +  + 
Sbjct: 439 LDLTSNQLTHLPHQLFQGLGKLEYLLLSHNRLAELPADALGPLQRAFWLDVSHNRLEALP 498

Query: 479 NLSLNSLHQLAGLRLTENNISNIS 502
              L SL +L  L L  N++   +
Sbjct: 499 GSLLASLGRLRYLNLRNNSLRTFT 522

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 203/427 (47%), Gaps = 22/427 (5%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC------ 219
           L SL+ L+L  + + +L       LQ+L YL+L +N+L N+A   F++  +         
Sbjct: 97  LSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHTPSLASLSLSSN 156

Query: 220 -------GI-----NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG 267
                  G+     +L  L+L  NS   LP   F  L  L EL L GN LT+L      G
Sbjct: 157 LLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALFCG 216

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           L  L  L+LS N L ++   +F     L+++YL  N I  +APG F  +  L  LDLS+N
Sbjct: 217 LGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHN 276

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
            +    +   TF GL  L VL +A+N +  L    FKDL+ L+ L L +N+I  +   TF
Sbjct: 277 RVAG--LMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTF 334

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
             L  L  L +++N++  +   +   L  ++V++L  N L  + E   +    L   HL 
Sbjct: 335 EGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLE 394

Query: 448 GNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
            + L  +       L  L+ L L DN I+ I   SL  L +L  L LT N ++++ + +F
Sbjct: 395 HSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLF 454

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNIS 565
           + L  L  L L+ N++  + A           + +  N+L  +  GLF  L  + +L++ 
Sbjct: 455 QGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRVRYLSLR 514

Query: 566 ENLLEWF 572
            N L+ F
Sbjct: 515 NNSLQTF 521

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|Q9HBX8|LGR6_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 6 OS=Homo sapiens GN=LGR6 PE=2 SV=3

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 190/388 (48%), Gaps = 18/388 (4%)

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           LDLSMN++  L   +F  L+ L  L L+ N LS++   +FS         +L++L L NN
Sbjct: 71  LDLSMNNLTELQPGLFHHLRFLEELRLSGNHLSHIPGQAFSGL------YSLKILMLQNN 124

Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQ 291
               +PAE    L  LQ L L  N+++ + + + +GL+SL  L L  N L  IP    N 
Sbjct: 125 QLGGIPAEALWELPSLQSLRLDANLISLVPERSFEGLSSLRHLWLDDNALTEIPVRALNN 184

Query: 292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351
              L+ + L  N I+ +    F  LT L+VL L NN +  + +   +F GLH L  L++ 
Sbjct: 185 LPALQAMTLALNRISHIPDYAFQNLTSLVVLHLHNNRI--QHLGTHSFEGLHNLETLDLN 242

Query: 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
           YNK+ +   +I + L RLQ L   NN I++I    F     L T+   +N ++ +  ++ 
Sbjct: 243 YNKLQEFPVAI-RTLGRLQELGFHNNNIKAIPEKAFMGNPLLQTIHFYDNPIQFVGRSAF 301

Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLG 470
             L  L  LSL N  ++  E   LK +TSL+   L    +  +P  + + L  L+ L+L 
Sbjct: 302 QYLPKLHTLSL-NGAMDIQEFPDLKGTTSLEILTLTRAGIRLLPSGMCQQLPRLRVLELS 360

Query: 471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF 530
            N I E+   SL+   +L  + L  N I  I    F +LS L  L+L+ N I+ +    F
Sbjct: 361 HNQIEELP--SLHRCQKLEEIGLQHNRIWEIGADTFSQLSSLQALDLSWNAIRSIHPEAF 418

Query: 531 DNNSNLVAIRLDGNYLT-----DIGGLF 553
               +LV + L  N LT      +GGL 
Sbjct: 419 STLHSLVKLDLTDNQLTTLPLAGLGGLM 446

Orphan receptor.

Homo sapiens (taxid: 9606)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 165/643 (25%), Positives = 279/643 (43%), Gaps = 92/643 (14%)

Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++  N + ++    F  L  L+VLHLE+NQ+  I R  F  L  L  L ++ NKL+ + 
Sbjct: 66  LDLDRNNITRITKMDFTGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLP 125

Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKT 466
                S   L+ L L  N+++ I   A +  T +++  L+ N ++ I     R L  L+ 
Sbjct: 126 ELLFQSTPKLTRLDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDLEI 185

Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNI--------------SNISKGVFE-KLSV 511
           L L +N I+ I   S N + ++  LRL  N++                 + G F   ++ 
Sbjct: 186 LTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTLCMAP 245

Query: 512 LTILNLASNKIQK---------VEAGTFDNNS-----------NLVAIRLDGNYLTDIGG 551
           + +   +   +QK          EA   + NS           N+V  R  G  LT+I  
Sbjct: 246 VHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCR--GKGLTEIPA 303

Query: 552 LFPKLPNLVWLNISENLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQL 604
             P+        I E  LE      IPA        L+ +DI  NQIS++      +   
Sbjct: 304 NLPE-------GIVEIRLEQNSIKSIPAGAFIQYKKLKRIDISKNQISDIAPD-AFQGLK 355

Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNL--ISKVQPYTFFMKPNLTRVDLVGNRL 662
            LT      NK+TE+        V    L  N   I+ ++  TF    NL  + L  N+L
Sbjct: 356 SLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKL 415

Query: 663 KNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
           + I++     +PL   ++I   ++ +NPF CDC+++WL  Y  +      N ++     C
Sbjct: 416 QTISKGLF--APL---QSIQTLHLAQNPFVCDCHLKWLADYLQD------NPIETSGARC 464

Query: 723 KLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDF-----DACDCEMTCPNNCTCYH 777
                 AN  I   +  S +F C             D+       C  ++ CP  C C  
Sbjct: 465 SSPRRLANKRI--SQIKSKKFRCSGSE---------DYRNRFSSECFMDLVCPEKCRC-- 511

Query: 778 DVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR-KKLQILFLNS 836
               E  ++DCS     +++P  +P   T+L L+ N I V+ +     +   L+ + L++
Sbjct: 512 ----EGTIVDCSNQKL-SRIPSHLPEYTTDLRLNDNDIAVLEATGIFKKLPNLRKINLSN 566

Query: 837 SHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL 896
           + ++ +    F+G   +  L L  N+L  + G  F  L  L+ L L+ N I  ++N TF 
Sbjct: 567 NRIKEVREGAFDGAAGVQELMLTGNQLETMHGRMFRGLSGLKTLMLRSNLISCVNNDTFA 626

Query: 897 SLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDC 937
            L+ +++L L  NRIT+ +    ++   + +I L SNP++C+C
Sbjct: 627 GLSSVRLLSLYDNRITTISPGAFTTLVSLSTINLLSNPFNCNC 669

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1269
242006518	1241	toll, putative [Pediculus humanus corpor	0.940	0.961	0.627	0.0
189234217	1237	PREDICTED: similar to vasorin [Tribolium	0.933	0.957	0.617	0.0
157107508	1343	toll [Aedes aegypti] gi|108884099|gb|EAT	0.976	0.922	0.566	0.0
270002906	1212	tollo [Tribolium castaneum]	0.915	0.958	0.608	0.0
170072076	1261	vasorin [Culex quinquefasciatus] gi|1678	0.970	0.976	0.574	0.0
170066864	1332	vasorin [Culex quinquefasciatus] gi|1678	0.954	0.909	0.581	0.0
193615415	1248	PREDICTED: slit homolog 3 protein-like [	0.942	0.958	0.583	0.0
322787490	1240	hypothetical protein SINV_12174 [Solenop	0.952	0.975	0.575	0.0
307215440	1249	Protein toll [Harpegnathos saltator]	0.948	0.963	0.571	0.0
332028193	1242	Protein toll [Acromyrmex echinatior]	0.947	0.968	0.573	0.0

>gi|242006518|ref|XP_002424097.1| toll, putative [Pediculus humanus corporis] gi|212507403|gb|EEB11359.1| toll, putative [Pediculus humanus corporis]

 Score = 1586 bits (4107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 780/1243 (62%), Positives = 978/1243 (78%), Gaps = 50/1243 (4%)

Query: 8    VFITVLISA-LGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
            V  T+   A   ++SAS+SKALRYQAPDECKW +  S+G      +AA  D++VALVC+L
Sbjct: 4    VTFTIFFGATFSVLSASLSKALRYQAPDECKWLSANSDGEN----TAAVDDEDVALVCRL 59

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
             TINSE+ENTNFS+IQ Q+TVRLR+EC + LFFQSSL+ GSF++L++LK+LS+E+CKIGN
Sbjct: 60   GTINSEVENTNFSVIQPQHTVRLRLECNNTLFFQSSLNSGSFRSLVELKELSIEYCKIGN 119

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            L+AG+F+GL++L+ LTLRTHNTDWS M+L I  + F + L  L+ LDL  N+IWTL D +
Sbjct: 120  LTAGAFKGLKELRNLTLRTHNTDWSAMTLHIQPDAFEENLDLLQRLDLGENNIWTLADGV 179

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSN----YDTARCGINLRVLDLSNNSFDSLPAEGFS 242
            FCPL  L YLNLT+N+L NV    F       +T +CG NL +LDLSNNS D +P E  S
Sbjct: 180  FCPLHKLEYLNLTRNRLRNVTALRFGGSGQEQNTNKCGSNLVILDLSNNSIDVVPPEALS 239

Query: 243  RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
             L +L++LYL GN ++ LAD AL+GL SLTVL+L+ N LVN+PPELF+  +DLKE+YLQN
Sbjct: 240  GLLKLKKLYLNGNGMSLLADRALEGLISLTVLSLNNNKLVNLPPELFSDKKDLKELYLQN 299

Query: 303  NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI 362
            NSINVLAPG+FN LTQLIVLDLS NELT EWVN+ATF+G+  LVVL+++YN+++KL+ S+
Sbjct: 300  NSINVLAPGLFNDLTQLIVLDLSRNELTSEWVNSATFTGMLHLVVLDVSYNRISKLEPSL 359

Query: 363  FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
            F+DLYRLQ+L LE N IESI  NTF+SL NLHTLI+SNN+L  IES +   L  LS+LSL
Sbjct: 360  FRDLYRLQILKLEGNVIESIPENTFSSLYNLHTLILSNNRLSVIESYTFSGLYVLSLLSL 419

Query: 423  DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482
            DNN++E I+  ALKNS+SLQD HLNGNKL E+P VL ++  LKTLDLG+N IT I N + 
Sbjct: 420  DNNDIESIDPQALKNSSSLQDLHLNGNKLLEVPLVLSDVPLLKTLDLGENHITNIANSTF 479

Query: 483  NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
              +  + GLRLTENNI NISKG+F+K+S L ILNL+ NKIQKVE G FDNN  L AIRLD
Sbjct: 480  GQMQHMYGLRLTENNIGNISKGIFDKMSSLKILNLSRNKIQKVEPGAFDNNVKLQAIRLD 539

Query: 543  GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
            GNYL+DIGGLF KLPNL+WLNIS+N LEWFDYALIP  LQWLDIH N+I+ELGNYFEIES
Sbjct: 540  GNYLSDIGGLFAKLPNLIWLNISDNRLEWFDYALIPTGLQWLDIHANRITELGNYFEIES 599

Query: 603  QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
             LRL+ FDAS+NKLTE+TG+AIP SVE LFL +NLISKVQ YTFF KPNLTRVDL GN++
Sbjct: 600  HLRLSTFDASANKLTEITGSAIPDSVELLFLNDNLISKVQSYTFFKKPNLTRVDLYGNKI 659

Query: 663  KNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ-SYSVNKERNKPNLVDLDTVT 721
             ++N  +LRIS +P+ K +P+FYIG NP++CDC M+WLQ S   N+ RN+P L+DL+++ 
Sbjct: 660  TSLNPNSLRISAVPADKLLPEFYIGGNPYECDCTMEWLQKSNQENRARNQPKLMDLESIY 719

Query: 722  CKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSW 781
            CKL+YNR    I L E  S++FLC+YE +C  LCHCCDFDACDC+MTCPNNCTCYHD SW
Sbjct: 720  CKLMYNRGRSYIPLVEVESSRFLCQYEFHCFALCHCCDFDACDCKMTCPNNCTCYHDQSW 779

Query: 782  EANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET 841
             ANV+DC+  GY N LP RIPMDAT+LYLDGN +  +GSH+FIGRKKL+IL++NSS++E 
Sbjct: 780  SANVVDCTAKGYVNALPERIPMDATQLYLDGNDLQAIGSHAFIGRKKLKILYMNSSNIEI 839

Query: 842  IHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHL 901
            IHN+TFNGLKEL +LRLD+N L E+ G EFE LENLR+LYLQ NKI+ I+N TFL L HL
Sbjct: 840  IHNRTFNGLKELELLRLDNNNLQELNGQEFEGLENLRQLYLQNNKIVSINNDTFLPLRHL 899

Query: 902  KVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIR 961
            ++L+LD+N+I  FAVWHLS  + S++L++N WSC+C++T++FR++++ SR ++ D+S I+
Sbjct: 900  EILRLDNNKIKYFAVWHLSPSLTSVSLSNNHWSCECEYTDRFREWIETSRKTITDLSSIK 959

Query: 962  CMTGS------EVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMN 1015
            CM  +      E+GF I+     SC +                      TI + +H    
Sbjct: 960  CMKPTNRTDVFEIGFFIVNDNSTSCEI----------------EPIIENTINMTDHI--- 1000

Query: 1016 GSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSE 1075
                       QDY+ LL+  ++A   +++++++I +YRQEMRVWF+SRFGVRLFYKS+E
Sbjct: 1001 -----------QDYLPLLVATMTAFLTIIVVILVIFLYRQEMRVWFYSRFGVRLFYKSTE 1049

Query: 1076 IEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQ 1135
            ++ DDRDKLFDAFVSYSSKDEA+VAEELAP+LE+GDP+YKLCLHYR+FPV  +I DTIVQ
Sbjct: 1050 LDRDDRDKLFDAFVSYSSKDEAWVAEELAPMLEHGDPSYKLCLHYRDFPVNAFIADTIVQ 1109

Query: 1136 AVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEVPQKDLDPDIRL 1194
            AVESSRRTIMVLSENFIKSEWCR+EFKSAHHQVLR  +KRLIV+LLGEVPQKDLDPDIRL
Sbjct: 1110 AVESSRRTIMVLSENFIKSEWCRFEFKSAHHQVLRDRRKRLIVVLLGEVPQKDLDPDIRL 1169

Query: 1195 YLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLN 1237
            YLK+NTYLQWGDKLFWEKL+FALPDVPNNQR    R+ +R+ N
Sbjct: 1170 YLKTNTYLQWGDKLFWEKLRFALPDVPNNQR---TRSSMRNSN 1209

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234217|ref|XP_972104.2| PREDICTED: similar to vasorin [Tribolium castaneum]

 Score = 1493 bits (3866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1225 (61%), Positives = 963/1225 (78%), Gaps = 41/1225 (3%)

Query: 7    SVFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCK 65
            +V   VL  A+ G++SAS+SKALRYQAPDECKW  V S G E           +VALVC+
Sbjct: 4    TVVCAVLFGAVFGVLSASLSKALRYQAPDECKWVVVDS-GTE----------DDVALVCR 52

Query: 66   LRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG 125
            L+TINSE+ENTNFS+IQ Q+TVRLR+EC D LFFQSSLS GSF+ L++L++LS+E+CKIG
Sbjct: 53   LQTINSELENTNFSVIQPQHTVRLRLECSDALFFQSSLSAGSFKPLVELRELSIEYCKIG 112

Query: 126  NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA 185
            NLS G+FRGL++L+ LT+RTHNTDWS M+L++S N FTDEL+ LE LDL  N++W+LPD 
Sbjct: 113  NLSDGAFRGLKELRNLTVRTHNTDWSAMTLEVSPNAFTDELRLLERLDLGENNMWSLPDG 172

Query: 186  IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245
            + CPL +L  LNLT+N+L  V++F F++  +  CG NLR+LDLS N+ D LP+  FS LS
Sbjct: 173  VLCPLYALEVLNLTRNRLREVSSFRFAHNPSESCGSNLRLLDLSRNNIDRLPSSQFSALS 232

Query: 246  RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
            RLQ+LYLQGN LT LAD AL+GL +L VL L+ N LV++PPELF+ ++D++E+YLQNNSI
Sbjct: 233  RLQKLYLQGNGLTHLADRALEGLVALNVLKLADNRLVSLPPELFSDTKDIREMYLQNNSI 292

Query: 306  NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
            NVLAPG+F+ LTQL+VLDLS+NELT +W+NAATF+GL RLVVL+I++N++ KL+ S+F+D
Sbjct: 293  NVLAPGLFSELTQLLVLDLSHNELTADWINAATFAGLVRLVVLDISHNRITKLEQSVFRD 352

Query: 366  LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            LY LQ+L L +N IE+I  NTF++L NLHTLI+SNNK+ +IES++ + L  LS+LSLDNN
Sbjct: 353  LYSLQILRLNDNFIENIPENTFSALYNLHTLIISNNKITKIESDTFNGLYVLSLLSLDNN 412

Query: 426  ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
             + +I + ALKN +SLQD HLNGNKL ++P+VL ++  LKTLDLG+N I  I N +   +
Sbjct: 413  RISWIHQEALKNCSSLQDLHLNGNKLVQVPEVLYSVPMLKTLDLGENHIDVITNETFRDM 472

Query: 486  HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
            +Q+ GLRLTENNI NISKGVF+K++ L ILNL+ NKIQKV AG FD N NL AIRLDGNY
Sbjct: 473  NQMYGLRLTENNIGNISKGVFDKMTALKILNLSRNKIQKVAAGAFDANVNLQAIRLDGNY 532

Query: 546  LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
            LTDI  LF KLP+LVWLNIS+N L+WFDYALIP  LQWLDIH NQI ELGN+FEIES L 
Sbjct: 533  LTDIQELFAKLPSLVWLNISDNQLKWFDYALIPTGLQWLDIHSNQIEELGNFFEIESSLS 592

Query: 606  LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
            L+ FDAS+NKLTE+TG+AIP+SVE LFL +NLISKVQ YTFF KPNLTRVDL GN++ ++
Sbjct: 593  LSTFDASANKLTEITGSAIPNSVEVLFLNDNLISKVQSYTFFKKPNLTRVDLFGNKITSL 652

Query: 666  NQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSV-NKERNKPNLVDLDTVTCKL 724
            +  ALRIS +P  K +P+FYIG NP+QCDC M+WLQ  +V N+ RN+P LVDL+++ C+L
Sbjct: 653  DPNALRISSVPPDKPLPEFYIGGNPYQCDCTMEWLQKVNVGNRNRNQPKLVDLESIYCQL 712

Query: 725  LYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN 784
            LYNR    + L EA   QFLC YET+C  LCHCCDFDACDCEMTCP NCTCYHD SW AN
Sbjct: 713  LYNRGRTYVPLVEAAPFQFLCTYETHCFALCHCCDFDACDCEMTCPTNCTCYHDQSWSAN 772

Query: 785  VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
            V+DCS+ GY ++LP +IPM AT+LYLDGN +  + SH+FIGRKKL+ILF+N+S++E I N
Sbjct: 773  VVDCSSAGYVSKLPEQIPMYATQLYLDGNDLRSLNSHAFIGRKKLKILFVNNSNIEVIQN 832

Query: 845  KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
            +TFNGLK+L IL LD+NR+ E+ GYEFE LE+LRE++LQ N+I +I+N TF+ L  L+++
Sbjct: 833  RTFNGLKDLEILHLDENRIAELHGYEFEGLESLREIFLQQNRITHINNTTFVGLRQLRIV 892

Query: 905  QLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +LDHNR+  + VW L + +  +TL  NPWSC+C+FTEK R+++ R   +V D + +RC  
Sbjct: 893  RLDHNRLHLYDVWQLPTTMIEVTLAYNPWSCECEFTEKLREWMVRG-DAVSDSAMVRCDV 951

Query: 965  GS---EVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILS 1021
             S   E GF + +    SC    T + +  N+ N   T T T                + 
Sbjct: 952  YSDNPETGFYVNQENGTSC----TGLPNIDNSVNGNLTATKT----------------II 991

Query: 1022 ELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDR 1081
            + Q  QDY+ LL+I ++    L+++++L+ I+RQE+RVW HS+FGVRLF +SS+++ DDR
Sbjct: 992  QRQIIQDYLPLLVITLAVFAFLIIVILLLFIFRQEVRVWLHSKFGVRLFQRSSDLDRDDR 1051

Query: 1082 DKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSR 1141
            DKLFDAFVSYSSKDEA+VAE LAP LE   P YKLCLHYR+FPVG ++ DTIVQAVESS+
Sbjct: 1052 DKLFDAFVSYSSKDEAWVAEVLAPALE---PNYKLCLHYRDFPVGAFLADTIVQAVESSK 1108

Query: 1142 RTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEVPQKDLDPDIRLYLKSNT 1200
            RTIM+LSENFIKSEWCR+EFKSAHHQVLR  ++RLIV+LLGEVPQKDLDPDIRLYLK+N 
Sbjct: 1109 RTIMILSENFIKSEWCRFEFKSAHHQVLRDRRRRLIVVLLGEVPQKDLDPDIRLYLKTNV 1168

Query: 1201 YLQWGDKLFWEKLKFALPDVPNNQR 1225
            YLQWGDKLFWEKLKFALPDVPNNQR
Sbjct: 1169 YLQWGDKLFWEKLKFALPDVPNNQR 1193

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107508|ref|XP_001649813.1| toll [Aedes aegypti] gi|108884099|gb|EAT48324.1| AAEL000633-PA [Aedes aegypti]

 Score = 1481 bits (3835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/1286 (56%), Positives = 956/1286 (74%), Gaps = 47/1286 (3%)

Query: 5    PGSVFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALV 63
            P    ++VL   + G+  AS+SK+L  QAPDEC+W              +   + ++ LV
Sbjct: 3    PSPALLSVLFGTIFGVFGASLSKSLLSQAPDECRW--------------SGYSEDDLTLV 48

Query: 64   CKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK 123
            C+LRTINSE+ENTNFS++  + TVRLR++C D LFFQSS+SPGSF+ L +L+ LS+E+CK
Sbjct: 49   CRLRTINSELENTNFSVLHPENTVRLRLQCNDGLFFQSSISPGSFRQLSELRSLSIEYCK 108

Query: 124  IGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLP 183
            I NLS GSFRGL++L  LTLRTHNTDWS++SL+I+ +VF  EL  LE LDLS N++W++P
Sbjct: 109  IANLSDGSFRGLKELMNLTLRTHNTDWSSVSLEIAPHVFNSELSKLEQLDLSQNNMWSIP 168

Query: 184  DAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR----CGINLRVLDLSNNSFDSLPAE 239
            D + CPL  L YLNLTQN+L +++ F FS   + R    CG ++ +LDLS+N+ D+LP  
Sbjct: 169  DGMICPLTKLQYLNLTQNRLRDLSVFHFSASLSTRLSKKCGGSITILDLSHNNIDNLPPA 228

Query: 240  GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299
             FS L +L EL LQ N L F+AD AL+GL SL+ L++S+N L N+PPELF++++ +KE+Y
Sbjct: 229  IFSGLGKLTELRLQNNGLNFIADRALEGLLSLSKLDISLNRLSNLPPELFSEAKHIKEIY 288

Query: 300  LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
            LQNNSINVLAPGIF+ L QL+VLD+SNNELT EW+N ATF GL RL++L++A NK++KL+
Sbjct: 289  LQNNSINVLAPGIFSELQQLLVLDISNNELTSEWINPATFKGLSRLILLDLANNKISKLE 348

Query: 360  SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
             SIF+DL+ LQ+L L++N IE+IH  TF+ L+ LHTL++SNN+L  IE  S   L+ L++
Sbjct: 349  PSIFRDLFSLQILRLQDNFIETIHEGTFSELTALHTLVISNNRLSNIEYFSFQGLSRLTL 408

Query: 420  LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
            LSLD N +  I+  A +N ++L D HLNGNKL ++P  L ++  L+TLDLG+N I+ I+N
Sbjct: 409  LSLDYNRISRIDRVAFRNLSTLHDLHLNGNKLLQVPDALYDVPLLRTLDLGENHISNIDN 468

Query: 480  LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
             S   +  + GLRLTENN+  I KG F+ +  L ILNL+ N+++KV+A  FDNN+NL AI
Sbjct: 469  ASFKEMFHMYGLRLTENNVETIRKGTFDAMKSLQILNLSKNRLKKVDAACFDNNTNLQAI 528

Query: 540  RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
            RLDGNYLTDI GLF KLPNLVWLNIS+N LE FDYALIP  LQWLDIH N+I+ELGNYFE
Sbjct: 529  RLDGNYLTDISGLFTKLPNLVWLNISDNHLEVFDYALIPTGLQWLDIHANKIAELGNYFE 588

Query: 600  IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG 659
            IESQL L+  DASSN+LTE+TG+AIP+SVE L+L +NLISKVQ YTFF KPNLTRVDL G
Sbjct: 589  IESQLALSTIDASSNQLTEITGSAIPNSVELLYLNDNLISKVQSYTFFKKPNLTRVDLFG 648

Query: 660  NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDT 719
            N++  ++  ALRIS +P  + +P+FYIG NP+QCDCN+ WLQ  +V+  R +P L+DLD+
Sbjct: 649  NKITTLDPNALRISAVPDDRALPEFYIGGNPYQCDCNLNWLQKNNVD-SRTQPKLMDLDS 707

Query: 720  VTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDV 779
            + CKLLYNR    + L EA  NQFLC+YET+C  LCHCCDF ACDC+M CP  CTCYHD 
Sbjct: 708  IYCKLLYNRGRTYVPLVEALPNQFLCKYETHCFALCHCCDFYACDCKMECPARCTCYHDQ 767

Query: 780  SWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV 839
            SW +NV+DCS  GY+ QLP +IPMD+T++YLDGN    + SH+F+GRKKL++LFLN+S+V
Sbjct: 768  SWTSNVVDCSRAGYEEQLPEQIPMDSTQIYLDGNNFRTLSSHAFLGRKKLKVLFLNNSNV 827

Query: 840  ETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLT 899
            E I N+TF GLKEL IL+LD N++T + G+EF  L+ L+EL LQ+NKI  I+N +F  L 
Sbjct: 828  EMISNRTFYGLKELEILQLDHNQITGLNGFEFVGLDRLKELLLQFNKISTIANHSFDHLP 887

Query: 900  HLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQ 959
            +L+VL+LDHNRI  F +WHL  Q+  + L SNPWSCDC++ EKFR+YL ++   V D  +
Sbjct: 888  NLRVLRLDHNRIVEFNMWHLPKQLTDLRLASNPWSCDCEYVEKFREYL-KTYDFVRDKVK 946

Query: 960  IRCM--------TGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTT---------TTT 1002
            +RC         T   VG  +  +   +  V+   V   S  +N             +TT
Sbjct: 947  VRCSATITSGNDTAMIVGGAVNGSATGASAVIPKGVPDGSGESNGVGVGGFLIYLDNSTT 1006

Query: 1003 TTTIFIPEHSPMNGSF-----ILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEM 1057
              +  +P  + +NG+      +LS   P + Y+ LL+  +    V++++ +++ ++RQEM
Sbjct: 1007 LCSGAVPLDNIINGNLTSRKTVLSP-PPIEGYIPLLVAALCGFTVIIIMTLIMFVFRQEM 1065

Query: 1058 RVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLC 1117
            RVWFHSRFGVRLFY++++++ ++RDKLFDAFVSYSSKDEAFVAEELAP+LENGDP+YKLC
Sbjct: 1066 RVWFHSRFGVRLFYRNADMDKNERDKLFDAFVSYSSKDEAFVAEELAPMLENGDPSYKLC 1125

Query: 1118 LHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLI 1176
            LHYR+FPVG YI DTIVQAVESSRRTIMVLSENFIKSEWCR+EFKSAHHQVLR  ++RLI
Sbjct: 1126 LHYRDFPVGAYIADTIVQAVESSRRTIMVLSENFIKSEWCRFEFKSAHHQVLRDRRRRLI 1185

Query: 1177 VILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHL 1236
            VILLGEVPQKDLDPDIRLYLK+NTYLQWGDKLFWEKL+FALPDVPNNQR    + Q  ++
Sbjct: 1186 VILLGEVPQKDLDPDIRLYLKTNTYLQWGDKLFWEKLRFALPDVPNNQR--RRQQQSINM 1243

Query: 1237 NHSAHHHNHNHRHHQHHHNNTSQEKI 1262
             HS   +N+      ++ NNTS + I
Sbjct: 1244 THSNFRNNYQLTRTPNNRNNTSNQLI 1269

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002906|gb|EEZ99353.1| tollo [Tribolium castaneum]

 Score = 1472 bits (3810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1222 (60%), Positives = 948/1222 (77%), Gaps = 60/1222 (4%)

Query: 7    SVFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCK 65
            +V   VL  A+ G++SAS+SKALRYQAPDECKW  V S G E           +VALVC+
Sbjct: 4    TVVCAVLFGAVFGVLSASLSKALRYQAPDECKWVVVDS-GTE----------DDVALVCR 52

Query: 66   LRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG 125
            L+TINSE+ENTNFS+IQ Q+TVRLR+EC D LFFQSSLS GSF+ L++L++LS+E+CKIG
Sbjct: 53   LQTINSELENTNFSVIQPQHTVRLRLECSDALFFQSSLSAGSFKPLVELRELSIEYCKIG 112

Query: 126  NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA 185
            NLS G+FRGL++L+ LT+RTHNTDWS M+L++S N FTDEL+ LE LDL  N++W+LPD 
Sbjct: 113  NLSDGAFRGLKELRNLTVRTHNTDWSAMTLEVSPNAFTDELRLLERLDLGENNMWSLPDG 172

Query: 186  IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245
            + CPL +L  LNLT+N+L  V++F F++  +  CG NLR+LDLS N+ D LP+  FS LS
Sbjct: 173  VLCPLYALEVLNLTRNRLREVSSFRFAHNPSESCGSNLRLLDLSRNNIDRLPSSQFSALS 232

Query: 246  RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
            RLQ+LYLQGN LT LAD AL+GL +L VL L+ N LV++PPELF+ ++D++E+YLQNNSI
Sbjct: 233  RLQKLYLQGNGLTHLADRALEGLVALNVLKLADNRLVSLPPELFSDTKDIREMYLQNNSI 292

Query: 306  NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
            NVLAPG+F+ LTQL+VLDLS+NELT +W+NAATF+GL RLVVL+I++N++ KL+ S+F+D
Sbjct: 293  NVLAPGLFSELTQLLVLDLSHNELTADWINAATFAGLVRLVVLDISHNRITKLEQSVFRD 352

Query: 366  LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            LY LQ+L L +N IE+I  NTF++L NLHTLI+SNNK+ +IES++ + L  LS+LSLDNN
Sbjct: 353  LYSLQILRLNDNFIENIPENTFSALYNLHTLIISNNKITKIESDTFNGLYVLSLLSLDNN 412

Query: 426  ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
             + +I + ALKN +SLQD HLNGNKL ++P+VL ++  LKTLDLG+N I  I N +   +
Sbjct: 413  RISWIHQEALKNCSSLQDLHLNGNKLVQVPEVLYSVPMLKTLDLGENHIDVITNETFRDM 472

Query: 486  HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
            +Q+ GLRLTENNI NISKGVF+K++ L ILNL+ NKIQKV AG FD N NL AIRLDGNY
Sbjct: 473  NQMYGLRLTENNIGNISKGVFDKMTALKILNLSRNKIQKVAAGAFDANVNLQAIRLDGNY 532

Query: 546  LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
            LTDI  LF KLP+LVWLNIS+N L+WFDYALIP  LQWLDIH NQI ELGN+FEIES L 
Sbjct: 533  LTDIQELFAKLPSLVWLNISDNQLKWFDYALIPTGLQWLDIHSNQIEELGNFFEIESSLS 592

Query: 606  LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
            L+ FDAS+NKLTE+TG+AIP+SVE LFL +NLISKVQ YTFF KPNLTRVDL GN++ ++
Sbjct: 593  LSTFDASANKLTEITGSAIPNSVEVLFLNDNLISKVQSYTFFKKPNLTRVDLFGNKITSL 652

Query: 666  NQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSV-NKERNKPNLVDLDTVTCKL 724
            +  ALRIS +P  K +P+FYIG NP+QCDC M+WLQ  +V N+ RN+P LVDL+++ C+L
Sbjct: 653  DPNALRISSVPPDKPLPEFYIGGNPYQCDCTMEWLQKVNVGNRNRNQPKLVDLESIYCQL 712

Query: 725  LYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN 784
            LYNR    + L EA   QFLC YET+C  LCHCCDFDACDCEMTCP NCTCYHD SW AN
Sbjct: 713  LYNRGRTYVPLVEAAPFQFLCTYETHCFALCHCCDFDACDCEMTCPTNCTCYHDQSWSAN 772

Query: 785  VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
            V+DCS+ GY ++LP +IPM AT+LYLDGN +  + SH+FIGRKKL+ILF+N+S++E I N
Sbjct: 773  VVDCSSAGYVSKLPEQIPMYATQLYLDGNDLRSLNSHAFIGRKKLKILFVNNSNIEVIQN 832

Query: 845  KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
            +TFNGLK+L IL LD+NR+ E+ GYEFE LE+LRE++LQ N+I +I+N TF+ L  L+++
Sbjct: 833  RTFNGLKDLEILHLDENRIAELHGYEFEGLESLREIFLQQNRITHINNTTFVGLRQLRIV 892

Query: 905  QLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +LDHNR+  + VW L + +  +TL  NPWSC+C+FTEK R+++ R   +V D + +RC+ 
Sbjct: 893  RLDHNRLHLYDVWQLPTTMIEVTLAYNPWSCECEFTEKLREWMVRG-DAVSDSAMVRCVF 951

Query: 965  GSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQ 1024
                               +T +  +S +              +   +P  G ++     
Sbjct: 952  N------------------TTEIDYYSED--------------VYSDNPETGFYV----- 974

Query: 1025 PQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKL 1084
              Q+ V  L +      V++    L+ I+RQE+RVW HS+FGVRLF +SS+++ DDRDKL
Sbjct: 975  -NQENVITLAVFAFLIIVIL----LLFIFRQEVRVWLHSKFGVRLFQRSSDLDRDDRDKL 1029

Query: 1085 FDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTI 1144
            FDAFVSYSSKDEA+VAE LAP LE   P YKLCLHYR+FPVG ++ DTIVQAVESS+RTI
Sbjct: 1030 FDAFVSYSSKDEAWVAEVLAPALE---PNYKLCLHYRDFPVGAFLADTIVQAVESSKRTI 1086

Query: 1145 MVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQ 1203
            M+LSENFIKSEWCR+EFKSAHHQVLR  ++RLIV+LLGEVPQKDLDPDIRLYLK+N YLQ
Sbjct: 1087 MILSENFIKSEWCRFEFKSAHHQVLRDRRRRLIVVLLGEVPQKDLDPDIRLYLKTNVYLQ 1146

Query: 1204 WGDKLFWEKLKFALPDVPNNQR 1225
            WGDKLFWEKLKFALPDVPNNQR
Sbjct: 1147 WGDKLFWEKLKFALPDVPNNQR 1168

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170072076|ref|XP_001870087.1| vasorin [Culex quinquefasciatus] gi|167868157|gb|EDS31540.1| vasorin [Culex quinquefasciatus]

 Score = 1471 bits (3808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1271 (57%), Positives = 947/1271 (74%), Gaps = 40/1271 (3%)

Query: 8    VFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
              ++VL   + G+  AS+SK+L  QAPDEC+W              +   + ++ LVC+L
Sbjct: 6    ALLSVLFGTIFGVFGASLSKSLLSQAPDECRW--------------SGYSEDDLTLVCRL 51

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
            RTINSE+ENTNFS++  + TVRLR++C D LFFQSS+SPGSF+ L +L+ LS+EFCKI N
Sbjct: 52   RTINSELENTNFSVLHPENTVRLRLQCNDGLFFQSSISPGSFRQLSELRSLSIEFCKIAN 111

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            LS GSFRGL KL  LTLRTHNTDWS++SL+++ +VF  EL  LE LDLS N++W+LPD +
Sbjct: 112  LSDGSFRGLGKLTNLTLRTHNTDWSSVSLEVAPHVFNAELSKLERLDLSQNNMWSLPDGM 171

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR----CGINLRVLDLSNNSFDSLPAEGFS 242
             CPL  L YLNLTQN+L +++ F FS   + R    CG  +  LDLS+N+ D+LP   FS
Sbjct: 172  ICPLTKLEYLNLTQNRLRDLSVFHFSASLSTRLSKKCGSTITTLDLSHNNIDNLPPAIFS 231

Query: 243  RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
             L +L EL LQ N L F+AD AL+GL SL+ L++S+N L N+PPELF++++ +KE+YLQN
Sbjct: 232  GLGKLTELRLQSNGLNFIADRALEGLISLSKLDISLNRLSNLPPELFSEAKHIKEIYLQN 291

Query: 303  NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI 362
            NSINVLAPGIF+ L QL+VLDLSNNELT EWVN+ATF GL RL++L++A NK++KL+ +I
Sbjct: 292  NSINVLAPGIFSELQQLLVLDLSNNELTSEWVNSATFKGLSRLILLDLANNKISKLEPAI 351

Query: 363  FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
            F+DLY LQ+L L++N IESI  NTF+ L+ L+TL++SNN+L  IE  +   L  L++LSL
Sbjct: 352  FRDLYSLQILRLQDNFIESIQENTFSELTALNTLVISNNRLSNIEYFTFQGLNRLALLSL 411

Query: 423  DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482
            D N +  I+  A KN ++LQD HLNGNKL ++P  L ++  L+TLDLG+N I+ I+N S 
Sbjct: 412  DYNRISRIDRVAFKNLSTLQDLHLNGNKLLQVPDALYDVPLLRTLDLGENHISNIDNASF 471

Query: 483  NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
              +  + GLRLTENNI  I KG F+ +  L ILNL+ N++++VE   FDNN+NL AIRLD
Sbjct: 472  KDMIHMYGLRLTENNIETIRKGTFDAMKSLQILNLSKNRLKRVEQACFDNNTNLQAIRLD 531

Query: 543  GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
            GNYLTDI GLF KLPNLVWLNIS+N LE FDYALIP  LQWLDIH N+I+ELGNYFEIES
Sbjct: 532  GNYLTDIAGLFTKLPNLVWLNISDNHLEVFDYALIPTGLQWLDIHANKIAELGNYFEIES 591

Query: 603  QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
            QL L+  DASSN+LTE+TG+AIP+SVE L+L +NLISKVQ YTFF KPNLTRVDL GN++
Sbjct: 592  QLALSTIDASSNQLTEITGSAIPNSVELLYLNDNLISKVQSYTFFKKPNLTRVDLFGNKI 651

Query: 663  KNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
              ++  ALRIS +P  K +P+FYIG NP+QCDCN+ WLQ  +V+  R +P L+DLD++ C
Sbjct: 652  TTLDPNALRISAVPDDKPLPEFYIGGNPYQCDCNLNWLQKNNVD-SRTQPKLMDLDSIYC 710

Query: 723  KLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWE 782
            KLLYNR    + L EA  NQFLC+YET+C  LCHCCDF ACDC+M CP  CTCYHD SW 
Sbjct: 711  KLLYNRGRTYVPLVEALPNQFLCKYETHCFALCHCCDFYACDCKMECPARCTCYHDQSWT 770

Query: 783  ANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI 842
            +NV+DCS  GYD +LP +IPMD+T++YLDGN    + SH+F+GRKKL+ILFLN+S+VE I
Sbjct: 771  SNVVDCSRAGYDEKLPDQIPMDSTQIYLDGNNFKTLASHAFLGRKKLKILFLNNSNVEVI 830

Query: 843  HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK 902
             N+TF GLKEL IL+L+ N++TE+ G+EF  L+ L+EL+LQYN+I  I+N++F  L +L+
Sbjct: 831  SNRTFYGLKELEILQLNHNQITELNGFEFVGLDRLKELFLQYNRIATIANQSFDHLHNLR 890

Query: 903  VLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
            +L+LDHNRI  F +WHL  Q+  + L +N WSCDC++ E+FR+YL ++   V D  +I+C
Sbjct: 891  ILRLDHNRIVEFNMWHLPKQLTDVRLAANSWSCDCEYVERFREYL-KTFEFVKDRMKIKC 949

Query: 963  MT----GSEVGFTIMRT-VIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGS 1017
             T    G+E    +  T V     VV           +N+T   +     IP  + +NG+
Sbjct: 950  ATITLPGNETALVVNGTSVTEPVRVVPEGAEGFLVYFDNSTNLCSGA---IPLDNVINGN 1006

Query: 1018 F-----ILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYK 1072
                  +LS   P + Y+ LL+  +    V++++ +++ ++RQEMRVWFHS+FGVRLFY+
Sbjct: 1007 LTSRKTVLSP-APIEGYIPLLVAALCGFSVIIIVTLIVFVFRQEMRVWFHSKFGVRLFYR 1065

Query: 1073 SSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDT 1132
            +S+++ ++RDKLFDAFVSYSSKDEAFVAEELAP+LENGDP+YKLCLHYR+FPVG YI DT
Sbjct: 1066 NSDMDKNERDKLFDAFVSYSSKDEAFVAEELAPLLENGDPSYKLCLHYRDFPVGAYIADT 1125

Query: 1133 IVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEVPQKDLDPD 1191
            IVQAVESSRRTIMVLSENFIKSEWCR+EFKSAHHQVLR  ++RLIVILLGEVPQKDLDPD
Sbjct: 1126 IVQAVESSRRTIMVLSENFIKSEWCRFEFKSAHHQVLRDRRRRLIVILLGEVPQKDLDPD 1185

Query: 1192 IRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRHHQ 1251
            IRLYLK+NTYLQWGDKLFWEKL+FALPDVPNNQR    R Q +   +  H +  N     
Sbjct: 1186 IRLYLKTNTYLQWGDKLFWEKLRFALPDVPNNQR----RRQQQPPINMTHSNIRNQYQLT 1241

Query: 1252 HHHNNTSQEKI 1262
               NN S  ++
Sbjct: 1242 RTPNNRSNNQM 1252

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066864|ref|XP_001868253.1| vasorin [Culex quinquefasciatus] gi|167863061|gb|EDS26444.1| vasorin [Culex quinquefasciatus]

 Score = 1470 bits (3806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/1248 (58%), Positives = 942/1248 (75%), Gaps = 37/1248 (2%)

Query: 8    VFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
              ++VL   + G+  AS+SK+L  QAPDEC+W              +   + ++ LVC+L
Sbjct: 6    ALLSVLFGTIFGVFGASLSKSLLSQAPDECRW--------------SGYSEDDLTLVCRL 51

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
            RTINSE+ENTNFS++  + TVRLR++C D LFFQSS+SPGSF+ L +L+ LS+EFCKI N
Sbjct: 52   RTINSELENTNFSVLHPENTVRLRLQCNDGLFFQSSISPGSFRQLSELRSLSIEFCKIAN 111

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            LS GSFRGL KL  LTLRTHNTDWS++SL+++ +VF  EL  LE LDLS N++W+LPD +
Sbjct: 112  LSDGSFRGLGKLTNLTLRTHNTDWSSVSLEVAPHVFNAELSKLERLDLSQNNMWSLPDGM 171

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR----CGINLRVLDLSNNSFDSLPAEGFS 242
             CPL  L YLNLTQN+L +++ F FS   + R    CG  +  LDLS+N+ D+LP   FS
Sbjct: 172  ICPLTKLEYLNLTQNRLRDLSVFHFSASLSTRLSKKCGSTITTLDLSHNNIDNLPPAIFS 231

Query: 243  RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
             L +L EL LQ N L F+AD AL+GL SL+ L++S+N L N+PPELF++++ +KE+YLQN
Sbjct: 232  GLGKLTELRLQSNGLNFIADRALEGLISLSKLDISLNRLSNLPPELFSEAKHIKEIYLQN 291

Query: 303  NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI 362
            NSINVLAPGIF+ L QL+VLDLSNNELT EWVN+ATF GL RL++L++A NK++KL+ +I
Sbjct: 292  NSINVLAPGIFSELQQLLVLDLSNNELTSEWVNSATFKGLSRLILLDLANNKISKLEPAI 351

Query: 363  FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
            F+DLY LQ+L L++N IESI  NTF+ L+ L+TL++SNN+L  IE  +   L  L++LSL
Sbjct: 352  FRDLYSLQILRLQDNFIESIQENTFSELTALNTLVISNNRLSNIEYFTFQGLNRLALLSL 411

Query: 423  DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482
            D N +  I+  A KN ++LQD HLNGNKL ++P  L ++  L+TLDLG+N I+ I+N S 
Sbjct: 412  DYNRISRIDRVAFKNLSTLQDLHLNGNKLLQVPDALYDVPLLRTLDLGENHISNIDNASF 471

Query: 483  NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
              +  + GLRLTENNI  I KG F+ +  L ILNL+ N++++VE   FDNN+NL AIRLD
Sbjct: 472  KDMIHMYGLRLTENNIETIRKGTFDAMKSLQILNLSKNRLKRVEQACFDNNTNLQAIRLD 531

Query: 543  GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
            GNYLTDI GLF KLPNLVWLNIS+N LE FDYALIP  LQWLDIH N+I+ELGNYFEIES
Sbjct: 532  GNYLTDIAGLFTKLPNLVWLNISDNHLEVFDYALIPTGLQWLDIHANKIAELGNYFEIES 591

Query: 603  QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
            QL L+  DASSN+LTE+TG+AIP+SVE L+L +NLISKVQ YTFF KPNLTRVDL GN++
Sbjct: 592  QLALSTIDASSNQLTEITGSAIPNSVELLYLNDNLISKVQSYTFFKKPNLTRVDLFGNKI 651

Query: 663  KNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
              ++  ALRIS +P  K +P+FYIG NP+QCDCN+ WLQ  +V+  R +P L+DLD++ C
Sbjct: 652  TTLDPNALRISAVPDDKPLPEFYIGGNPYQCDCNLNWLQKNNVD-SRTQPKLMDLDSIYC 710

Query: 723  KLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWE 782
            KLLYNR    + L EA  NQFLC+YET+C  LCHCCDF ACDC+M CP  CTCYHD SW 
Sbjct: 711  KLLYNRGRTYVPLVEALPNQFLCKYETHCFALCHCCDFYACDCKMECPARCTCYHDQSWT 770

Query: 783  ANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI 842
            +NV+DCS  GYD +LP +IPMD+T++YLDGN    + SH+F+GRKKL+ILFLN+S+VE I
Sbjct: 771  SNVVDCSRAGYDEKLPDQIPMDSTQIYLDGNNFKTLASHAFLGRKKLKILFLNNSNVEVI 830

Query: 843  HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK 902
             N+TF GLKEL IL+L+ N++TE+ G+EF  L+ L+EL+LQYN+I  I+N++F  L +L+
Sbjct: 831  SNRTFYGLKELEILQLNHNQITELNGFEFVGLDRLKELFLQYNRIATIANQSFDHLHNLR 890

Query: 903  VLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
            +L+LDHNRI  F +WHL  Q+  + L +N WSCDC++ E+FR+YL ++   V D  +I+C
Sbjct: 891  ILRLDHNRIVEFNMWHLPKQLTDVRLAANSWSCDCEYVERFREYL-KTFEFVKDRMKIKC 949

Query: 963  MT----GSEVGFTIMRT-VIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGS 1017
             T    G+E    +  T V     VV           +N+TT  +     IP  + +NG+
Sbjct: 950  ATITLPGNETALVVNGTSVTEPVRVVPEGAEGFLVYFDNSTTLCSGA---IPLDNVINGN 1006

Query: 1018 F-----ILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYK 1072
                  +LS   P + Y+ LL+  +    V++++ +++ ++RQEMRVWFHS+FGVRLFY+
Sbjct: 1007 LTSRKTVLSP-APIEGYIPLLVAALCGFSVIIIVTLIVFVFRQEMRVWFHSKFGVRLFYR 1065

Query: 1073 SSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDT 1132
            +S+++ ++RDKLFDAFVSYSSKDEAFVAEELAP+LENGDP+YKLCLHYR+FPVG YI DT
Sbjct: 1066 NSDMDKNERDKLFDAFVSYSSKDEAFVAEELAPLLENGDPSYKLCLHYRDFPVGAYIADT 1125

Query: 1133 IVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEVPQKDLDPD 1191
            IVQAVESSRRTIMVLSENFIKSEWCR+EFKSAHHQVLR  ++RLIVILLGEVPQKDLDPD
Sbjct: 1126 IVQAVESSRRTIMVLSENFIKSEWCRFEFKSAHHQVLRDRRRRLIVILLGEVPQKDLDPD 1185

Query: 1192 IRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHS 1239
            IRLYLK+NTYLQWGDKLFWEKL+FALPDVPNNQR    +  + ++ HS
Sbjct: 1186 IRLYLKTNTYLQWGDKLFWEKLRFALPDVPNNQRRRQQQPPI-NMTHS 1232

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193615415|ref|XP_001948566.1| PREDICTED: slit homolog 3 protein-like [Acyrthosiphon pisum]

 Score = 1455 bits (3767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1230 (58%), Positives = 938/1230 (76%), Gaps = 34/1230 (2%)

Query: 11   TVLISALGLV-SASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTI 69
             VL+S++ LV SAS+SK LR++ P+EC+W AVT+ G E         +QEVAL C++R++
Sbjct: 7    AVLVSSVLLVMSASLSKTLRHKPPNECEWLAVTAYGDETIASQTVSDEQEVALHCRVRSM 66

Query: 70   NSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSA 129
            NSE+E TNFSIIQ QYTV+L+IEC   L+  SSL  G+FQTLIDL++L+++ CK+ +L+ 
Sbjct: 67   NSELEKTNFSIIQPQYTVKLKIECNSQLYLLSSLGTGTFQTLIDLRELTIDSCKLNSLAQ 126

Query: 130  GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP 189
             SFRGLR+L+ LT+ THN DW++++L++  + F +EL  LE LDLS N+I  LP+ +FC 
Sbjct: 127  ESFRGLRQLRNLTIVTHNNDWTSVNLEVQPDTFLEELNMLERLDLSHNNIAKLPEGVFCS 186

Query: 190  LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
            LQ+L YLNLT+N+L ++  F F +    +CG NL+VLDLS N+FDS+ ++ FS L+ LQ+
Sbjct: 187  LQNLVYLNLTRNRLRHLELFHFGSSGQQKCGANLQVLDLSYNNFDSINSQVFSHLTNLQD 246

Query: 250  LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
            L+LQGN+++ + DH  DGL++L+VLN++ N LVN+ PELF  +RDL+E+YLQNN+INVLA
Sbjct: 247  LHLQGNVISVIGDHGFDGLSALSVLNVASNRLVNLAPELFADTRDLREMYLQNNTINVLA 306

Query: 310  PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
            PG+FN L++L+VLDLS N+LTEEWVNAATF+GL RLV L+++ N + KLD+ IF+DLYRL
Sbjct: 307  PGLFNELSRLLVLDLSENQLTEEWVNAATFTGLVRLVFLSMSNNNITKLDAMIFRDLYRL 366

Query: 370  QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
            + L L+NN ++ +  N F+SL ++ TL++S+NKL RI+  + D L +L+ LSLDNN+++Y
Sbjct: 367  RSLRLDNNGVQYLPENVFSSLIDMRTLVLSSNKLTRIDQFTFDGLPSLNQLSLDNNQIQY 426

Query: 430  IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
            I+  AL+NST L+  HLNGNKL +IP VL N+ +LKTLDLG N IT+I N S  ++ QL 
Sbjct: 427  IDPEALRNSTDLEYLHLNGNKLYDIPAVLNNIPNLKTLDLGYNQITDIFNTSFPAMSQLI 486

Query: 490  GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
            GL+L +N ISN+SKGVF++L  L ++NLA+NKIQK+EAGTFDNN+ LVA+R+DGNYL D+
Sbjct: 487  GLKLLKNQISNVSKGVFDRLPELHLINLANNKIQKIEAGTFDNNTRLVAVRVDGNYLRDV 546

Query: 550  GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYF 609
            GGLF KL NLVWLNISEN LEWFDYALIP  LQWLDIHGNQI+ELGN++E+E+Q  LT F
Sbjct: 547  GGLFSKLSNLVWLNISENFLEWFDYALIPTGLQWLDIHGNQITELGNHYELETQ--LTGF 604

Query: 610  DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
            DAS+NKLTE+TG++IP  V+NL+L+NN ISK+Q Y FF KPNLT+VDL GNRLK +N  +
Sbjct: 605  DASNNKLTEVTGSSIPDKVQNLYLSNNQISKIQSYAFFKKPNLTQVDLTGNRLKTLNPQS 664

Query: 670  LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRA 729
            LRIS +P+ + +P F +G NPF CDC+MQWLQ+YSV  +RNKP LVDL+T TC+++YNR 
Sbjct: 665  LRISTVPAGRTMPQFLVGNNPFVCDCSMQWLQAYSVEPDRNKPKLVDLETATCEVIYNRG 724

Query: 730  NPAILLKEAHSNQFLCEYETNCAPLC--HCCDFDACDCEMTCPNNCTCYHDVSWEANVID 787
               +LLKEA   QFLC+Y+  CA      CCDFDACDC+M CP NCTC+H VS  +NV+D
Sbjct: 725  ESRVLLKEASEEQFLCQYDMECAKRSTCDCCDFDACDCKMICPTNCTCFHSVSSTSNVVD 784

Query: 788  CSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTF 847
            CS+ GY N++P +IPM+ T LYLDGN I  + +H+F+GRK L++L+LNSS+VE + N+TF
Sbjct: 785  CSSAGYINRVPDKIPMNTTVLYLDGNTIKTLSTHTFLGRKILKVLYLNSSNVERVQNRTF 844

Query: 848  NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD 907
            +GLKEL +L LDDNR++ + G EF  L+ L+ELYL +N+I YI++ TF  L  L +L+LD
Sbjct: 845  HGLKELEVLHLDDNRISTLYGDEFYGLDKLKELYLNHNRITYINSTTFRFLQQLTILRLD 904

Query: 908  HNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCM---- 963
            HNRI  F VW LS  +  +TL  N WSC CDF ++ +++LQ +  +V D  Q+RC+    
Sbjct: 905  HNRIAQFPVWRLSPTLTHLTLAENQWSCACDFVQQMKEFLQYAADAVVDAEQVRCLDHSG 964

Query: 964  -------TGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNG 1016
                    G+  G T   +V    N  S  +    N  N   T  T T I  P+      
Sbjct: 965  GYNINSENGTVCGPTTPSSVEKPFNTSSNTIEGALNGGN--LTAPTKTIIQRPD------ 1016

Query: 1017 SFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEI 1076
                      QDY+ +LI+  SA F +++  +++ ++R EM+VW HSRFGVR+F KS+E 
Sbjct: 1017 ---------IQDYIPILIVSFSAVFFIIVAAMMVYVFRHEMKVWCHSRFGVRIFCKSTEF 1067

Query: 1077 EMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQA 1136
            EMD+RDKLFDAFVSYSSKDEAFV EELAPILENGDP+YKLCLHYREFP GGYI DTIVQA
Sbjct: 1068 EMDERDKLFDAFVSYSSKDEAFVIEELAPILENGDPSYKLCLHYREFPAGGYISDTIVQA 1127

Query: 1137 VESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDPDIRLY 1195
            VESS+RTIMVLSENFIKSEWCR+EFKSAHHQVLR K KRLIVILLGEVP KDLDPDIRLY
Sbjct: 1128 VESSKRTIMVLSENFIKSEWCRFEFKSAHHQVLRDKRKRLIVILLGEVPNKDLDPDIRLY 1187

Query: 1196 LKSNTYLQWGDKLFWEKLKFALPDVPNNQR 1225
            LK+N+YLQWGDK FWEKLKFALPDVPNNQR
Sbjct: 1188 LKTNSYLQWGDKHFWEKLKFALPDVPNNQR 1217

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787490|gb|EFZ13578.1| hypothetical protein SINV_12174 [Solenopsis invicta]

 Score = 1455 bits (3766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1231 (57%), Positives = 947/1231 (76%), Gaps = 22/1231 (1%)

Query: 8    VFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
             F+ +L+  + G++ AS+SKALRY+APDECKW  VT+  AE           +V+LVC+L
Sbjct: 3    AFLAILLGTIFGVLGASLSKALRYKAPDECKW--VTTGDAE----------DDVSLVCRL 50

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
            RTINSE+ENTNFS+IQ Q+TVRLR+EC D LF+QSSLS GSF+ L++L++L +E+CKIGN
Sbjct: 51   RTINSELENTNFSVIQPQHTVRLRLECSDALFYQSSLSAGSFRPLVELRELVIEYCKIGN 110

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            LS  +F+GL++L+ LT+RTHNTDWS M+LD+S   FTDEL+ LE LDL  N++W +P+  
Sbjct: 111  LSNDAFKGLKELRNLTVRTHNTDWSAMALDVSAGAFTDELRQLEKLDLGENNMWGIPEGA 170

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246
             CPL +L  LNLT+N+L ++  F F+    A+C  NLR LDLSNNS +SLP+  FS L+R
Sbjct: 171  LCPLVNLEVLNLTRNRLRDITGFRFNA--AAKCLTNLRELDLSNNSVESLPSAAFSGLTR 228

Query: 247  LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRD-LKEVYLQNNSI 305
            L  L LQ N ++F+AD A +GL SL +L L+ N L ++PPELF+ ++D +KE++L+NN++
Sbjct: 229  LHSLDLQCNAISFMADRAFEGLTSLAILRLADNRLASLPPELFSDAKDHIKEIHLRNNTL 288

Query: 306  NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
            +VL PG+F+ L+QL+VLDLS+NELT EWVNAATF+ L RLVVL++A N++ +LD ++F+D
Sbjct: 289  SVLPPGLFSELSQLLVLDLSHNELTAEWVNAATFTRLVRLVVLDLANNRIARLDPTVFRD 348

Query: 366  LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            LY LQ+L L+ N +ES+  NTF++L NLHTL++S+N+L  I++ +L  L  LS+LSLDNN
Sbjct: 349  LYSLQILRLQENLLESLPENTFSALYNLHTLLLSDNQLTVIDATTLSGLYVLSLLSLDNN 408

Query: 426  ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
             L  I   +L+N++SLQDFHLNGN+LT +P  L+    L+TLDLG+NLI+EI + + + +
Sbjct: 409  RLHTIHPGSLRNASSLQDFHLNGNRLTSVPDALKATPLLRTLDLGENLISEIPSGTFDHV 468

Query: 486  HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
             QL GLRLTEN+I N++KG+F+++  L ILNL+ N+IQ +E GTFD N NL AIRLDGN 
Sbjct: 469  EQLYGLRLTENHIGNLTKGIFDRIKELKILNLSRNRIQHIEPGTFDENLNLQAIRLDGNQ 528

Query: 546  LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
            LTDI GLF KLPNLVWLN+S+N L+WFDYA+IP  LQWLDIH N+I ELGNYFEIE+QL+
Sbjct: 529  LTDIAGLFNKLPNLVWLNVSDNKLKWFDYAMIPTGLQWLDIHSNEIRELGNYFEIETQLQ 588

Query: 606  LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
            L+ FDAS NKLTE+TGNAIP SVE LFL +NLISKVQ Y+FF KPNLTRVDL GN+++N+
Sbjct: 589  LSTFDASENKLTEITGNAIPMSVELLFLNDNLISKVQSYSFFKKPNLTRVDLKGNQIRNL 648

Query: 666  NQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYS-VNKERNKPNLVDLDTVTCKL 724
               ALRIS +PS +++P+FYIG+N + CDC M+WLQ  +  N+ R +P ++DL+++ CKL
Sbjct: 649  EPYALRISAVPSDRSLPEFYIGDNQYLCDCTMEWLQRVNRQNQTRVQPRVMDLESIYCKL 708

Query: 725  LYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN 784
            LY+R +  + L EA  +QFLC+Y+T+C  LCHCCDFDACDCEMTCP NCTCYHD SW AN
Sbjct: 709  LYDREHAFVPLVEASHSQFLCKYDTHCFALCHCCDFDACDCEMTCPQNCTCYHDQSWSAN 768

Query: 785  VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
            V+DCS GG+ N+LP +IPMDAT LYLDGN + VV SH+FIGRKKL++LFLNSS++E + N
Sbjct: 769  VVDCSNGGHVNRLPEQIPMDATRLYLDGNDLRVVSSHAFIGRKKLKVLFLNSSNIEIVQN 828

Query: 845  KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
            ++FNGL++L  L L DNR+ E+RG+EFE L+ LR+LYLQ N+I  I N TF  L  L++L
Sbjct: 829  RSFNGLRDLDDLHLQDNRIRELRGHEFEGLDALRQLYLQRNRIAAIGNDTFAPLRSLRIL 888

Query: 905  QLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +L +NR+T+ A+W L S I+ ++L  NPWSC+CD+ + +R++ +     V D + +RC+ 
Sbjct: 889  RLQNNRLTTLAIWTLPSSIE-VSLAGNPWSCECDYLQSYREWSRDPSIRVADAAALRCVY 947

Query: 965  GSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPM--NGSFILSE 1022
                 F      + + +    +VS+ S+    +   +   T  I   + M  N +  + E
Sbjct: 948  NV-TEFEAFGDEVFADDEFGFSVSTVSDARERSGNESAVCTGEISVDNDMYHNYTKTIIE 1006

Query: 1023 LQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRD 1082
             Q  QDY+ LL+   + S V++LL +L  ++R E+RVWFHSRFGVR+FY++ E++ DDRD
Sbjct: 1007 KQVLQDYLPLLVATSATSLVVILLCMLAFVFRHELRVWFHSRFGVRIFYRNHEVDRDDRD 1066

Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
            KLFDAFVSYSSKDEAFVAEELAP+LE G+P+YKLCLHYR+FPVG +I DTIVQAVESSRR
Sbjct: 1067 KLFDAFVSYSSKDEAFVAEELAPVLEMGNPSYKLCLHYRDFPVGSFIADTIVQAVESSRR 1126

Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQ-VLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTY 1201
            TIMVLSENFIKSEWCR++FKSAHHQ +   ++RLI++L+G+V Q+DLDPDIRLYLK+NTY
Sbjct: 1127 TIMVLSENFIKSEWCRFDFKSAHHQVLRDRRRRLILVLVGDVHQRDLDPDIRLYLKTNTY 1186

Query: 1202 LQWGDKLFWEKLKFALPDVPNNQRNNNNRNQ 1232
            LQWGDKLFWEKL+FALPDVPNNQR      Q
Sbjct: 1187 LQWGDKLFWEKLRFALPDVPNNQRATQRTRQ 1217

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215440|gb|EFN90107.1| Protein toll [Harpegnathos saltator]

 Score = 1443 bits (3736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/1242 (57%), Positives = 946/1242 (76%), Gaps = 38/1242 (3%)

Query: 7    SVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
            + F  +L +  G++ AS+SKALRY+APDECKW  VT+  AE           +V+LVC+L
Sbjct: 6    AFFAILLGTIFGVLGASLSKALRYKAPDECKW--VTTGDAE----------DDVSLVCRL 53

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
            RTINSE+ENTNFS+IQ Q+TVRLR+EC D LF+QSSLS GSF+ L++L++L +E+CKIGN
Sbjct: 54   RTINSELENTNFSVIQPQHTVRLRLECSDGLFYQSSLSAGSFRPLVELRELVIEYCKIGN 113

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            LS  +F+GLR+L+ LT+RTHNTDWS M+LD+S   FTDEL+ LE LDL  N++W++P+  
Sbjct: 114  LSDDAFKGLRELRNLTVRTHNTDWSAMALDLSAGAFTDELRQLEKLDLGENNMWSIPEGA 173

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246
             CPL +L  LNLT+N+L +V  F F+    ARC  +LR LDLSNNS +SLP+  FS L+R
Sbjct: 174  LCPLVNLEVLNLTRNRLRDVIGFRFNA--AARCLASLRELDLSNNSIESLPSAAFSGLTR 231

Query: 247  LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN 306
            L  L L+ N + F+AD A +GL+SL VL L+ N L ++PPELF  +RD++E++L+NN+++
Sbjct: 232  LHSLDLRCNAIGFMADRAFEGLSSLAVLRLADNRLASLPPELFADARDIQEIHLRNNTLS 291

Query: 307  VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL 366
            VL PG+F  LTQL+VLDLS NELT EWVNAATF+GL RLVVL+++ N++ +LD ++F+DL
Sbjct: 292  VLPPGLFGELTQLLVLDLSRNELTAEWVNAATFAGLVRLVVLDLSSNRIARLDPTVFRDL 351

Query: 367  YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426
            Y LQ+L L+ N +ES+  NTF++L NLHTL++S+N+L  +++ +L  L  LS+LSLDNN 
Sbjct: 352  YSLQILRLQENLLESLPENTFSALFNLHTLLLSDNQLTTVDATTLSGLYVLSLLSLDNNR 411

Query: 427  LEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
            L  I  +AL+N++SLQDFHLNGN+LT +P  L+    L+TLDLG+NLI  I N + + + 
Sbjct: 412  LHTIHPSALRNASSLQDFHLNGNRLTSVPDALKATPLLRTLDLGENLIPGIPNGTFDHVS 471

Query: 487  QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
            QL GLRLTEN+I N+SKGVF+++  L ILNL+ N+IQ +E GTFD N NL AIRLDGN L
Sbjct: 472  QLYGLRLTENHIGNLSKGVFDRVKELKILNLSRNRIQYIETGTFDENLNLQAIRLDGNQL 531

Query: 547  TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
            TDI GLF  LPNLVWLN+S+N L WFDYA+IP  LQWLDIH N+I ELGNY+EIE+QL+L
Sbjct: 532  TDIAGLFTHLPNLVWLNVSDNRLRWFDYAMIPTGLQWLDIHSNEIRELGNYYEIEAQLQL 591

Query: 607  TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
              FDAS N+LTE+TGN++P SVE LFL +NLISKVQ Y+FF KPNLTRVDL GN+++N+ 
Sbjct: 592  NTFDASENRLTEITGNSVPMSVELLFLNDNLISKVQSYSFFKKPNLTRVDLKGNQIRNLE 651

Query: 667  QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYS-VNKERNKPNLVDLDTVTCKLL 725
              ALRIS +P+ + +P+FYIG+N + CDC M+WLQ  +  N+ R +P ++DL+++ CKLL
Sbjct: 652  PYALRISAVPADRPLPEFYIGDNQYLCDCTMEWLQRVNRQNQTRVQPRVMDLESIYCKLL 711

Query: 726  YNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANV 785
            Y+R +  + L EA  +QFLC+Y+T+C  LCHCCDFDACDCEMTCP+NCTCYHD SW ANV
Sbjct: 712  YDREHAFVPLVEASHSQFLCKYDTHCFALCHCCDFDACDCEMTCPHNCTCYHDQSWSANV 771

Query: 786  IDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK 845
            +DCS  G+ ++LP +IPMDAT LYLDGN + VV SH+FIGRKKL++L+LNSS++E + N+
Sbjct: 772  VDCSNAGHASKLPEQIPMDATRLYLDGNDLRVVSSHAFIGRKKLKVLYLNSSNIEIVQNR 831

Query: 846  TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQ 905
            +FNGL+EL  L+L DNR+ E+RG+EFE L+ LR+L+LQ N+I  I+N TF  L  L+VL+
Sbjct: 832  SFNGLRELEDLQLQDNRIRELRGHEFEGLDALRQLHLQRNRIAAIANETFAPLRSLRVLR 891

Query: 906  LDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT- 964
            L +NR+TS A+W L + I+ ++L  NPWSC+CD+   +R++++ +  SV D   +RC+  
Sbjct: 892  LQNNRLTSPAIWTLPAAIE-VSLAGNPWSCECDYLRTYREWMRDASVSVADAPALRCVYN 950

Query: 965  -------GSEV------GFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEH 1011
                   G EV      GF I             +V + +N N++    T      +   
Sbjct: 951  VSEFEAFGDEVFADDEFGFAI-------AAANGRHVPAPANANDSAAVCTGGAAGSLDGD 1003

Query: 1012 SPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFY 1071
            +  N +  + E Q  QDY+ LL+  +++S +L+LL +L  ++R E+RVWFHSRFGVR+FY
Sbjct: 1004 ARRNYTKTIIEKQVLQDYLPLLVATLASSLLLMLLCMLAFVFRHELRVWFHSRFGVRIFY 1063

Query: 1072 KSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGD 1131
            ++ E++ DDRDKLFDAFVSYSSKDEAFVAEELAP+LE G+P+YKLCLHYR+FPVG +I D
Sbjct: 1064 RNHEVDRDDRDKLFDAFVSYSSKDEAFVAEELAPVLEMGNPSYKLCLHYRDFPVGSFIAD 1123

Query: 1132 TIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQ-VLRGKKRLIVILLGEVPQKDLDP 1190
            TIVQAVESSRRTIMVLSENFIKSEWCR++FKSAHHQ +   ++RLI++L+G+V Q+DLDP
Sbjct: 1124 TIVQAVESSRRTIMVLSENFIKSEWCRFDFKSAHHQVLRDRRRRLILVLVGDVHQRDLDP 1183

Query: 1191 DIRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQ 1232
            DIRLYLK+NTYLQWGDKLFWEKL+FALPDVPNNQR      Q
Sbjct: 1184 DIRLYLKTNTYLQWGDKLFWEKLRFALPDVPNNQRPTQRTRQ 1225

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028193|gb|EGI68244.1| Protein toll [Acromyrmex echinatior]

 Score = 1442 bits (3734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/1237 (57%), Positives = 943/1237 (76%), Gaps = 34/1237 (2%)

Query: 8    VFITVLISAL-GLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKL 66
             F+ +L+  + G++ AS+SKALRY+APDECKW  +T+  AE           +V+LVC+L
Sbjct: 6    AFLAILLGTIFGVLGASLSKALRYKAPDECKW--ITTGDAE----------DDVSLVCRL 53

Query: 67   RTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN 126
            RTINSE+ENTNFS+IQ Q+TVRLR+EC D LF+QSSLS GSF+ L++L++L +E+CKIGN
Sbjct: 54   RTINSELENTNFSVIQPQHTVRLRLECSDALFYQSSLSAGSFRPLVELRELVIEYCKIGN 113

Query: 127  LSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186
            LS  +F+GLR+L+ LT+RTHNTDWS M+LDIS   FTDEL+ LE LDL  N++W +P+  
Sbjct: 114  LSDDAFKGLRELRNLTVRTHNTDWSAMALDISAGAFTDELRQLEKLDLGENNMWGIPEGA 173

Query: 187  FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246
             CPL +L  LNLT+N+L ++  F F+     RC  NLR LDLSNNS +SLP+  FS L+R
Sbjct: 174  LCPLINLEILNLTRNRLRDIMGFRFNA--ATRCLTNLRELDLSNNSVESLPSAAFSGLTR 231

Query: 247  LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRD-LKEVYLQNNSI 305
            L  L L+ N ++F+AD A +GL SL +L L+ N L ++PPELF+ ++D ++E++L+NN++
Sbjct: 232  LHSLDLRCNAISFMADRAFEGLTSLAILRLADNRLASLPPELFSDAKDHIQEIHLRNNTL 291

Query: 306  NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
            +VL PG+F+ L++L+VLDLS+NELT EWVNAATF+ L RLVVL+++ N++ +LD ++F+D
Sbjct: 292  SVLPPGLFSELSRLLVLDLSHNELTAEWVNAATFTRLVRLVVLDLSSNRIARLDPTVFRD 351

Query: 366  LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            LY LQ+L L+ N +ES+  NTF++L NLHTL++S+N+L  I++ +L  L  LS+LSLDNN
Sbjct: 352  LYSLQILRLQENLLESLPENTFSALYNLHTLLLSDNQLTIIDATTLSGLYVLSLLSLDNN 411

Query: 426  ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
             L  I   +L+N++SLQDFHLNGN+LT +P  L+    L+TLDLG+NLI+EI + + + +
Sbjct: 412  RLHTIHPGSLRNASSLQDFHLNGNRLTSVPDALKATPLLRTLDLGENLISEIPSGTFDHV 471

Query: 486  HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
             QL GLRLTEN+I N++KGVF+++  L ILNL+ N+IQ +E GTFD N NL AIRLDGN 
Sbjct: 472  AQLYGLRLTENHIGNLTKGVFDRIKELKILNLSRNRIQYIEPGTFDENLNLQAIRLDGNQ 531

Query: 546  LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
            LTDI GLF KLPNLVWLN+S+N L+WFDYA+IP  LQWLDIH N+I ELGN FEIE+QL+
Sbjct: 532  LTDITGLFTKLPNLVWLNVSDNKLKWFDYAMIPTGLQWLDIHSNEIKELGNNFEIETQLQ 591

Query: 606  LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
            L+ FDAS NKLTE+TGNAIP SVE LFL +NLISKVQ Y+FF KPNLTRVDL GN+++N+
Sbjct: 592  LSTFDASENKLTEITGNAIPMSVELLFLNDNLISKVQSYSFFKKPNLTRVDLKGNQIRNL 651

Query: 666  NQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYS-VNKERNKPNLVDLDTVTCKL 724
               ALRIS +PS + +P+FYIG+N + CDC M+WLQ  +  N+ R +P ++DL+++ CKL
Sbjct: 652  EPYALRISAVPSDQPLPEFYIGDNQYLCDCTMEWLQRVNRQNQTRVQPRVMDLESIYCKL 711

Query: 725  LYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN 784
            LY+R +  + L EA  +QFLC+YET+C  LCHCCDFDACDCEMTCP NCTCYHD SW AN
Sbjct: 712  LYDREHVFVPLVEASHSQFLCKYETHCFALCHCCDFDACDCEMTCPQNCTCYHDQSWSAN 771

Query: 785  VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
            V+DCS GG+ N+LP +IPMDAT LYLDGN + +V SH+FIGRKKL++LFLNSS++E + N
Sbjct: 772  VVDCSNGGHVNKLPEQIPMDATRLYLDGNDLRIVSSHAFIGRKKLKVLFLNSSNIEIVQN 831

Query: 845  KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
            ++FNGL++L  L L DNR+ E+RG+EFE L+ LR+L+LQ N+I  I N TF  L  L++L
Sbjct: 832  RSFNGLRDLEDLHLQDNRIRELRGHEFEGLDALRQLHLQRNRIAAIGNDTFAPLRSLRIL 891

Query: 905  QLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +L +NR+T+  VW L S I+ I+L  NPWSC+CD+ + +R++ +     V D + +RC+ 
Sbjct: 892  RLQNNRLTTLVVWSLPSSIE-ISLAGNPWSCECDYLQSYREWSRDPSIRVTDAATLRCVY 950

Query: 965  --------GSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNG 1016
                    G EV F       P    +ST +       N +   T T ++    H     
Sbjct: 951  NVTEFEAFGDEV-FADDEFGFP----MSTTLGDSERAGNESAVCTGTISLDNDVHHNYTK 1005

Query: 1017 SFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEI 1076
            + I  E Q  QDY+ LL+   ++S V++LL +L  ++R E+RVWFHSRFGVR+FY++ E+
Sbjct: 1006 TII--EKQVLQDYLPLLVATSASSLVVILLCMLAFVFRHELRVWFHSRFGVRIFYRNHEV 1063

Query: 1077 EMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQA 1136
            + DDRDKLFDAFVSYSSKDEAFVAEELAP+LE G+P+YKLCLHYR+FPVG +I DTIVQA
Sbjct: 1064 DRDDRDKLFDAFVSYSSKDEAFVAEELAPVLEMGNPSYKLCLHYRDFPVGSFIADTIVQA 1123

Query: 1137 VESSRRTIMVLSENFIKSEWCRYEFKSAHHQ-VLRGKKRLIVILLGEVPQKDLDPDIRLY 1195
            VESSRRTIMVLSENFIKSEWCR++FKSAHHQ +   ++RLI++L+G+V Q+DLDPDIRLY
Sbjct: 1124 VESSRRTIMVLSENFIKSEWCRFDFKSAHHQVLRDRRRRLILVLVGDVHQRDLDPDIRLY 1183

Query: 1196 LKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQ 1232
            LK+NTYLQWGDKLFWEKL+FALPDVPNNQR      Q
Sbjct: 1184 LKTNTYLQWGDKLFWEKLRFALPDVPNNQRATQRTRQ 1220

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1269
FB|FBgn0029114	1346	Tollo "Tollo" [Drosophila mela	0.743	0.701	0.505	0.0
FB|FBgn0036494	1514	Toll-6 "Toll-6" [Drosophila me	0.591	0.496	0.480	2.9e-240
FB|FBgn0034476	1446	Toll-7 "Toll-7" [Drosophila me	0.707	0.621	0.413	1.3e-224
FB|FBgn0004364	1389	18w "18 wheeler" [Drosophila m	0.706	0.645	0.399	1e-215
WB|WBGene00006593	1221	tol-1 [Caenorhabditis elegans	0.490	0.510	0.300	2e-88
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.128	0.148	0.464	2.6e-65
RGD|1562655	987	Tlr13 "toll-like receptor 13"	0.289	0.372	0.280	2.6e-41
ZFIN|ZDB-GENE-040220-4	989	tlr21 "toll-like receptor 21"	0.327	0.420	0.276	4.7e-41
ZFIN|ZDB-GENE-040220-5	947	tlr22 "toll-like receptor 22"	0.491	0.658	0.241	6.8e-47
UNIPROTKB|F1ND28	972	TLR21 "Uncharacterized protein	0.107	0.140	0.401	2.7e-46

FB|FBgn0029114 Tollo "Tollo" [Drosophila melanogaster (taxid:7227)]

 Score = 2569 (909.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 489/968 (50%), Positives = 669/968 (69%)

Query:     1 MMVCPGSVFITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEV 60
             M+     +++ +    + +  A++SK + YQAPDEC+W    S G E           ++
Sbjct:     1 MLATTHMLYVLIATCVIPIFGAALSKTVLYQAPDECRW----SGGGE----------HDI 46

Query:    61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVE 120
              LVC LRTINSE+ENTNFS+IQ Q TVRLR+EC D LFFQSSLSP SF++L++L+DL++E
Sbjct:    47 TLVCHLRTINSELENTNFSVIQPQNTVRLRLECNDALFFQSSLSPDSFRSLVELRDLTIE 106

Query:   121 FCKIGNLSAGSFRGXXXXXXXXXXXHNTDWSTMSLDISHNVFTXXXXXXXXXXXXMNSIW 180
             +CK+GNL+ GSFRG           HN DWSTMSL+++ N F             +N+IW
Sbjct:   107 YCKLGNLTDGSFRGLQELRNLTIRTHNGDWSTMSLEMASNSFVEFRQLERLDLS-LNNIW 165

Query:   181 TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR----CGINLRVLDLSNNSFDSL 236
              +PD + CPL+SL +LN + NK+ +++ F FS   ++R    CG  L+ LDLS N   SL
Sbjct:   166 LIPDGMVCPLKSLQHLNASYNKIQDISNFYFSASLSSRKARVCGSTLQSLDLSANKMVSL 225

Query:   237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
             P    S L RL  L +  N ++FLAD A +G                +PPELF +++ L+
Sbjct:   226 PTAMLSALGRLTHLNMAKNSMSFLADRAFEGLLSLRVVDLSANRLTSLPPELFAETKQLQ 285

Query:   297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN 356
             E+YL+NNSINVLAPGIF  L +L+VLDL++NEL  +W+NAATF GL RL++L+++ NK++
Sbjct:   286 EIYLRNNSINVLAPGIFGELAELLVLDLASNELNSQWINAATFVGLKRLMMLDLSANKIS 345

Query:   357 KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
             +L++ IF+ L  LQ+L LE+N I+ +    FA L+NLHTLI+S N++  IE  +L  L  
Sbjct:   346 RLEAHIFRPLASLQILKLEDNYIDQLPGGIFADLTNLHTLILSRNRISVIEQRTLQGLKN 405

Query:   417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE 476
             L VLSLD N +  +++ +L N + LQD HLN NKL  +P+ L ++  LKTLD+G+N+I++
Sbjct:   406 LLVLSLDFNRISRMDQRSLVNCSQLQDLHLNDNKLQAVPEALAHVQLLKTLDVGENMISQ 465

Query:   477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
             I N S+  L  L GLR+TEN++++I +GVF+++S L ILNL+ NK++ +EAG+   NS L
Sbjct:   466 IENTSITQLESLYGLRMTENSLTHIRRGVFDRMSSLQILNLSQNKLKSIEAGSLQRNSQL 525

Query:   537 VAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN 596
              AIRLDGN L  I GLF +LPNLVWLNIS N LE FDY+ IP  LQWLD+  N+I++LGN
Sbjct:   526 QAIRLDGNQLKSIAGLFTELPNLVWLNISGNRLEKFDYSHIPIGLQWLDVRANRITQLGN 585

Query:   597 YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVD 656
             YFEIES+L L+ FDAS N LTE+T ++IP+SVE L+L +N ISK+QPYTFF KPNLTRVD
Sbjct:   586 YFEIESELSLSTFDASYNLLTEITASSIPNSVEVLYLNDNQISKIQPYTFFKKPNLTRVD 645

Query:   657 LVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKE-RNKPNLV 715
             LV NRL  +   ALR+SP+   + IP+FYIG N ++CDCN+ WLQ   VN+E R +P L+
Sbjct:   646 LVRNRLTTLEPNALRLSPIAEDREIPEFYIGHNAYECDCNLDWLQK--VNRESRTQPQLM 703

Query:   716 DLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTC 775
             DLD + C+L Y R +  + L EA S+ FLC+Y ++C  LCHCCDF ACDC+M CP+ C+C
Sbjct:   704 DLDQIHCRLAYARGSSHVSLIEAKSDDFLCKYASHCFALCHCCDFQACDCKMECPDRCSC 763

Query:   776 YHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLN 835
             YHD SW +NV+DCS   Y+  LP  IPMD+T+LYLDGN    + SH+FIGRK+L++L LN
Sbjct:   764 YHDQSWTSNVVDCSRASYEQTLPSHIPMDSTQLYLDGNNFRELQSHAFIGRKRLKVLHLN 823

Query:   836 SSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
              S +E +HN+TF GL EL +L+L  N+L  + G EF+ L+NL+ELYLQ+N I  I   TF
Sbjct:   824 HSRIEVLHNRTFYGLLELEVLQLQSNQLKALNGNEFQGLDNLQELYLQHNAIATIDTLTF 883

Query:   896 LSLTHLKVLQLDHNRITSFAVWH-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV 954
               L HLK+L+LDHN ITSFAVW+ L S +  + L SNPW+C C+F +K RDY+ R    V
Sbjct:   884 THLYHLKILRLDHNAITSFAVWNFLPSYLNELRLASNPWTCSCEFIDKLRDYINRHEYVV 943

Query:   955 HDISQIRC 962
              D  +++C
Sbjct:   944 -DKLKMKC 950

GO:0005886 "plasma membrane" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0008063 "Toll signaling pathway" evidence=IEA

GO:0009620 "response to fungus" evidence=IEA

GO:0060049 "regulation of protein glycosylation" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

GO:0002227 "innate immune response in mucosa" evidence=IMP

FB|FBgn0036494 Toll-6 "Toll-6" [Drosophila melanogaster (taxid:7227)]

 Score = 1919 (680.6 bits), Expect = 2.9e-240, Sum P(2) = 2.9e-240
 Identities = 363/755 (48%), Positives = 512/755 (67%)

Query:   212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXX 271
             S+  +  C ++L  LD+S+N F  LPA GF  L RL+ L +  N ++ +AD AL G    
Sbjct:   268 SSSSSTSCSLDLEYLDVSHNDFVVLPANGFGTLRRLRVLSVNNNGISMIADKALSGLKNL 327

Query:   272 XXXXXXXXXXXXIPPELF-NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
                         +P ELF  Q++ ++EVYLQNNSI+VL P +F+ L QL  LDLS N++T
Sbjct:   328 QILNLSSNKIVALPTELFAEQAKIIQEVYLQNNSISVLNPQLFSNLDQLQALDLSMNQIT 387

Query:   331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
               W++  TF GL RLV+LN+++NK+ KL+  IF DLY LQ+L+L +NQ+E+I  +TFA +
Sbjct:   388 STWIDKNTFVGLIRLVLLNLSHNKLTKLEPEIFSDLYTLQILNLRHNQLENIAADTFAPM 447

Query:   391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
             +NLHTL++S+NKLK +++ +L+ L  LS+LSLDNN L  +  +A +N ++LQD +LNGN+
Sbjct:   448 NNLHTLLLSHNKLKYLDAYALNGLYVLSLLSLDNNALIGVHPDAFRNCSALQDLNLNGNQ 507

Query:   451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
             L  +P  LRN+  L+T+DLG+N+IT + + +   L  L GLRL  N + NI+   F  L 
Sbjct:   508 LKTVPLALRNMRHLRTVDLGENMITVMEDSAFKGLGNLYGLRLIGNYLENITMHTFRDLP 567

Query:   511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
              L ILNLA N+I  VE G F+  S++ A+RLDGN L DI GLF  +P+L+WLNIS+N LE
Sbjct:   568 NLQILNLARNRIAVVEPGAFEMTSSIQAVRLDGNELNDINGLFSNMPSLLWLNISDNRLE 627

Query:   571 WFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVEN 630
              FDY  +P+ LQWLD+H N++S L N F ++S+L+L   D S N+L  +  ++IP+S+E 
Sbjct:   628 SFDYGHVPSTLQWLDLHKNRLSSLSNRFGLDSELKLQTLDVSFNQLQRIGPSSIPNSIEL 687

Query:   631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
             LFL +NLI+ V P TF  K NLTRVDL  N++  ++  +LRI P+  H+ +P+FYIG NP
Sbjct:   688 LFLNDNLITTVDPDTFMHKTNLTRVDLYANQITTLDIKSLRILPVWEHRALPEFYIGGNP 747

Query:   691 FQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETN 750
             F CDCN+ WLQ  +    R  P ++DL+T+ CKLL NR    I L EA    FLC Y+T+
Sbjct:   748 FTCDCNIDWLQKINHITSRQYPRIMDLETIYCKLLNNRERAYIPLIEAEPKHFLCTYKTH 807

Query:   751 CAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYL 810
             C  +CHCC+FDACDCEMTCP NCTC+HD +W  N+++CS   Y +++P R+PMD +ELY+
Sbjct:   808 CFAVCHCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECSGAAY-SEMPRRVPMDTSELYI 866

Query:   811 DGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYE 870
             DGN    +  HSF+GRK L +L+ N+S+V  I+N TF+GLK L+IL L+DN +  + G E
Sbjct:   867 DGNNFVELAGHSFLGRKNLAVLYANNSNVAHIYNTTFSGLKRLLILHLEDNHIISLEGNE 926

Query:   871 FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQ--IQSITL 928
             F  LENLRELYLQ NKI  I+N +F  L  L+VL+LD NR+  F VW LS+   +  I+L
Sbjct:   927 FHNLENLRELYLQSNKIASIANGSFQMLRKLEVLRLDGNRLMHFEVWQLSANPYLVEISL 986

Query:   929 TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCM 963
               N WSC+C +  +FR+YL +S   + D S++ C+
Sbjct:   987 ADNQWSCECGYLARFRNYLGQSSEKIIDASRVSCI 1021

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA;ISS

FB|FBgn0034476 Toll-7 "Toll-7" [Drosophila melanogaster (taxid:7227)]

 Score = 1910 (677.4 bits), Expect = 1.3e-224, Sum P(2) = 1.3e-224
 Identities = 378/914 (41%), Positives = 547/914 (59%)

Query:    64 CKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK 123
             C LR I  +       +  A  + +L I+C ++  F+S+L    F  L  L+ L ++ CK
Sbjct:    89 CALRLIERQ---PGLDLQGADGSSQLTIQCSELYLFESTLPVAVFARLQTLEALRLDSCK 145

Query:   124 IGNLSAGSFRGXXXXXXXXXXXHNTDWS-TMSLDISHNVFTXXXXXXXXXXXXMNSIWTL 182
             +  L   +F G           HN++W  T +L++  +                N++  L
Sbjct:   146 LLQLPNNAFEGLATLKSLRLSTHNSEWGPTRTLELFPDSLGGLKQLTDLDLGD-NNLRQL 204

Query:   183 PDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD----TARCGINLRVLDLSNNSFDSLPA 238
             P    CP+ +L  LNLT+N++       F++ +    +   G  L+VLD S+N   S+  
Sbjct:   205 PSGFLCPVGNLQVLNLTRNRIRTAEQMGFADMNCGAGSGSAGSELQVLDASHNELRSISE 264

Query:   239 E-GFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKE 297
               G SRL RLQ L L  N L+ L+  AL G                +P  LF  S++L+E
Sbjct:   265 SWGISRLRRLQHLNLAYNNLSELSGEALAGLASLRIVNLSNNHLETLPEGLFAGSKELRE 324

Query:   298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
             ++LQ N +  L  G+F+ L QL+V+DLS N+LT   V+  TF+GL RL+VLN+A+N + +
Sbjct:   325 IHLQQNELYELPKGLFHRLEQLLVVDLSGNQLTSNHVDNTTFAGLIRLIVLNLAHNALTR 384

Query:   358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
             +D   FK+LY LQ+L+L NN I  I  N F  L NLHTL ++ N+L  ++    + L  L
Sbjct:   385 IDYRTFKELYFLQILNLRNNSIGHIEDNAFLPLYNLHTLNLAENRLHTLDDKLFNGLYVL 444

Query:   418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
             S L+L+NN +  +E    KN + L++  L+ N+L E+P+ L++L  L+TLDLG+N I   
Sbjct:   445 SKLTLNNNLISVVEPAVFKNCSDLKELDLSSNQLNEVPRALQDLAMLRTLDLGENQIRTF 504

Query:   478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537
             +N S  +LHQL GLRL +N I NI+ G+F+ L  L++LNLA N+IQ +E G+FD N  L 
Sbjct:   505 DNQSFKNLHQLTGLRLIDNQIGNITVGMFQDLPRLSVLNLAKNRIQSIERGSFDKNFELE 564

Query:   538 AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNY 597
             AIRLD N+L DI G+F  L +L+WLN+SEN L WFDYA IP++L+WLDIHGN I  LGNY
Sbjct:   565 AIRLDRNFLADINGVFATLVSLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNY 624

Query:   598 FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
             ++++ ++R+   DAS N++TE+   +IP+++E LF+ NNLI  VQP  F  K NL RVDL
Sbjct:   625 YKLQEEIRVKTLDASHNRITEIGPMSIPNTIELLFINNNLIGNVQPNAFVDKANLARVDL 684

Query:   658 VGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL 717
               N+L  +    LR++P+ + K +P+FY+G NPF+CDC M WLQ  +    R  P ++D+
Sbjct:   685 YANQLSKLQLQQLRVAPVVAPKPLPEFYLGGNPFECDCTMDWLQRINNLTTRQHPRVMDM 744

Query:   718 DTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYH 777
               + C + + R      L       FLC YE++C  LCHCCDFDACDCEMTCP+NCTCYH
Sbjct:   745 ANIECVMPHARGAAVRPLSGLRPQDFLCRYESHCFALCHCCDFDACDCEMTCPSNCTCYH 804

Query:   778 DVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSS 837
             D  W  NV+DC  G    +LP R+PMD++ +YLDGN  PV+ +H+FIGRK L+ L++N S
Sbjct:   805 DQIWSTNVVDCG-GQQTTELPRRVPMDSSVVYLDGNNFPVLKNHAFIGRKNLRALYVNGS 863

Query:   838 HVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS 897
              V  I N+TF  L  L +L L DN+L  + GYEFE+L  LRELYLQ N++  I N T   
Sbjct:   864 QVAAIQNRTFASLASLQLLHLADNKLRTLHGYEFEQLSALRELYLQNNQLTTIENATLAP 923

Query:   898 LTHLKVLQLDHNRITSFAVW-----HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRS 952
             L  L+++++D NR+ +  +W     H  ++++SI+L  N WSC C F +    Y+  +  
Sbjct:   924 LAALELIRIDGNRLVTLPIWQMHATHFGTRLKSISLGRNQWSCRCQFLQALTSYVADNAL 983

Query:   953 SVHDISQIRCMTGS 966
              V D   I CM  S
Sbjct:   984 IVQDAQDIYCMAAS 997

GO:0005886 "plasma membrane" evidence=NAS

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0002752 "cell surface pattern recognition receptor signaling pathway" evidence=IC

GO:0008329 "pattern recognition receptor activity" evidence=IC

GO:0051607 "defense response to virus" evidence=IMP

GO:0046790 "virion binding" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010508 "positive regulation of autophagy" evidence=IMP

FB|FBgn0004364 18w "18 wheeler" [Drosophila melanogaster (taxid:7227)]

 Score = 1832 (650.0 bits), Expect = 1.0e-215, Sum P(2) = 1.0e-215
 Identities = 365/914 (39%), Positives = 551/914 (60%)

Query:    64 CKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK 123
             C +R + S    +   +  A+   RL ++C   L   S L+PG F+ L  L +L ++ CK
Sbjct:    43 CSVRALESGT-GSPLDLQVAEAAGRLDLQCSQELLHASELAPGLFRQLQKLSELRIDACK 101

Query:   124 IGNLSAGSFRGXXXXXXXXXXXHNTDWST-MSLDISHNVFTXXXXXXXXXXXXMNSIWTL 182
             +  +   +F G           HN  W    +L++    F              N+I  L
Sbjct:   102 LQRVPPNAFEGLMSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSELHLGD-NNIRQL 160

Query:   183 PDAIFCPLQSLSYLNLTQNKLSNVATFSFS----------NYDTARCG-INLRVLDLSNN 231
             P+ ++C + SL  LNLTQN++ +     FS          N + A  G   L+ LD+S N
Sbjct:   161 PEGVWCSMPSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQTLDVSFN 220

Query:   232 SFDSLP-AEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFN 290
                SLP A G SRL RLQ L LQ N ++ LA +AL G                +P E F 
Sbjct:   221 ELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFA 280

Query:   291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
              +++L+E++LQ N +  L  G+ + L QL+VLDLS N+LT   V+ +TF+GL RL+VLN+
Sbjct:   281 GNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIRLIVLNL 340

Query:   351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
             + N + ++ S  FK+LY LQ+L + NN I  I    F  L NLHTL ++ N+L  +++  
Sbjct:   341 SNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRI 400

Query:   411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG 470
              + L  L+ L+L+NN +  +E  A +N + L++  L+ N+LTE+P+ +++L  LKTLDLG
Sbjct:   401 FNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPEAVQDLSMLKTLDLG 460

Query:   471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF 530
             +N I+E  N +  +L+QL GLRL +N I NI+ G+F+ L  L++LNLA N+IQ +E G F
Sbjct:   461 ENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAF 520

Query:   531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
             D N+ + AIRLD N+LTDI G+F  L +L+WLN+SEN L WFDYA IP++L+WLDIHGN 
Sbjct:   521 DKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNY 580

Query:   591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKP 650
             I  LGNY++++ ++R+T  DAS N++TE+   ++P+S+E LF+ NN+I ++Q  TF  K 
Sbjct:   581 IEALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQANTFVDKT 640

Query:   651 NLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERN 710
              L RVDL  N L  I+  ALR++P+ + K +P+FY+G NPF+CDC+M+WLQ  +    R 
Sbjct:   641 RLARVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEWLQRINNLTTRQ 700

Query:   711 KPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCP 770
              P++VDL  + C + ++R+ P   L    ++ F+C+YE++C P CHCC+++ C+CE+ CP
Sbjct:   701 HPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICP 760

Query:   771 NNCTCYHDVSWEANVIDCSTGGYD-NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829
              NC+C+HD +W  N++DC  G  D   LP RIP D ++LYLDGN +P +      GR+ L
Sbjct:   761 GNCSCFHDATWATNIVDC--GRQDLAALPNRIPQDVSDLYLDGNNMPELEVGHLTGRRNL 818

Query:   830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889
             + L+LN+S++ T+ N +   L  L +L L++N+LT + G EF  L  LRELYL  N + +
Sbjct:   819 RALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTH 878

Query:   890 ISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR 949
             ISN TF  L  L+VL+LD+NR++S         +Q +TL  N WSC C    +   ++  
Sbjct:   879 ISNATFEPLVSLEVLRLDNNRLSSLPHLQYRHSLQGLTLGRNAWSCRCQQLRELAQFVSD 938

Query:   950 SRSSVHDISQIRCM 963
             +   V D   I C+
Sbjct:   939 NAMVVRDAHDIYCL 952

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0006955 "immune response" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0019731 "antibacterial humoral response" evidence=NAS;IMP;TAS

GO:0048598 "embryonic morphogenesis" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0019730 "antimicrobial humoral response" evidence=IMP

WB|WBGene00006593 tol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 758 (271.9 bits), Expect = 2.0e-88, Sum P(2) = 2.0e-88
 Identities = 195/648 (30%), Positives = 324/648 (50%)

Query:   298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
             V L  N++  + P     L  L+ L++S NE+  E  N++ FS    L +L+ +YNK++ 
Sbjct:   264 VNLAGNALKRV-PDAVAELASLVALNVSRNEI--EAGNSSVFSS-PELEMLDASYNKLDS 319

Query:   358 LDSS-IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
             L    + K   R+  LHLE+N IE +     A+ +NL TL +S+N+L+      L   + 
Sbjct:   320 LPVEWLQKCEKRIAHLHLEHNSIEQLTGGVLANATNLQTLDLSSNQLRVFRDEVLPENSK 379

Query:   417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE 476
             +  L L NN LE +E ++L +   L+   L+ NKLTE+P  +  +  LK +DL  N I +
Sbjct:   380 IGNLRLSNNSLELLEPSSL-SGLKLESLDLSHNKLTEVPAAIGKVEQLKKVDLSHNRIAK 438

Query:   477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
             +    LN + QL  + L+ N + +I   +F   S L  L++++N+I  +    F     L
Sbjct:   439 VYQYVLNKIKQLHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKDAFARCPKL 498

Query:   537 VAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN 596
               I +  N +  +     +   L  L++S N +    ++ +P +L+ L+   N I+ L  
Sbjct:   499 RKISMKMNKIKSLDEGLTEASGLRRLDVSHNEILVLKWSALPENLEILNADNNDINLLTA 558

Query:   597 YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVD 656
                  S   L     S+N +T +  + IP+S+E+L ++NN ++K+       K  L R++
Sbjct:   559 ASMSPSTANLKSVSLSNNGITIMNADQIPNSLESLDVSNNRLAKLGKTALAAKSQLRRLN 618

Query:   657 LVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVD 716
             L GN L  +   ++++        +    I ENP  CDC M W+    +   + K  + D
Sbjct:   619 LKGNLLTVVATESMKVVEAVHPLKVE---ISENPLICDCQMGWM----IGGAKPKVLIQD 671

Query:   717 LDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCY 776
              +T +C    +     I ++       LC Y++ C P C CC +  CDC+  CP NC C+
Sbjct:   672 SETASCSHAVD--GHQIQIQSLSKKDLLCPYKSVCEPECICCQYGNCDCKSVCPANCRCF 729

Query:   777 HDVSWEANVIDCSTGGYDNQLPPR------IPMDATELYLDGNRIPVVGSHSFIGRKKLQ 830
              D  +  N++ C   G  + +P R      +P+ ATE+ L G  +P + +HSFIGR +LQ
Sbjct:   730 RDDQFNINIVRCH--GNSSMVPKREFVVSELPVSATEIILSGVTLPQLRTHSFIGRLRLQ 787

Query:   831 ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI 890
              L +N + + +I  K F+ L  L  L L DN L  + G EF +   + +L+L  N+   +
Sbjct:   788 RLHINGTGLRSIQPKAFHTLPALKTLDLSDNSLISLSGEEFLKCGEVSQLFLNGNRFSTL 847

Query:   891 SNRTFLSLTHLKVLQLDHNRITSFA-VWHLSSQIQSITLTSNPWSCDC 937
             S   F  L +LK L L +N +     V H S+ +  I+L+SNP  CDC
Sbjct:   848 SRGIFEKLPNLKYLTLHNNSLEDIPQVLH-STALSKISLSSNPLRCDC 894

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0009790 "embryo development" evidence=IMP

GO:0006952 "defense response" evidence=IMP

GO:0005623 "cell" evidence=IDA

GO:0030424 "axon" evidence=ND

GO:0005057 "receptor signaling protein activity" evidence=ISS

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 2.6e-65, Sum P(3) = 2.6e-65
 Identities = 78/168 (46%), Positives = 124/168 (73%)

Query:  1053 YRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDP 1112
             ++ E+++W ++   + L++ + E ++D +DK FDAF+SYS KD++F+ + L P LE+G  
Sbjct:   830 FQTEIKIWLYAH-NLLLWFVTEE-DLD-KDKKFDAFISYSHKDQSFIEDYLVPQLEHGPQ 886

Query:  1113 AYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-G 1171
              ++LC+H R++ VGG+I + I+++V  SRRTI+VLS+NFIKSEW R EF++AH   L  G
Sbjct:   887 KFQLCVHERDWLVGGHIPENIMRSVADSRRTIIVLSQNFIKSEWARLEFRAAHRSALNEG 946

Query:  1172 KKRLIVILLGEVPQKD-LDPDIRLYLKSNTYLQWGDKLFWEKLKFALP 1218
             + R+IVI+  ++   + LD +++ YLK NTYL+WGD  FW+KL+FALP
Sbjct:   947 RSRIIVIIYSDIGDVEKLDEELKAYLKMNTYLKWGDPWFWDKLRFALP 994

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

RGD|1562655 Tlr13 "toll-like receptor 13" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
 Identities = 109/389 (28%), Positives = 175/389 (44%)

Query:   222 NLRVLDLSNNSFDSLPAEGFSRLSRLQEL-YL---QGNILTFLADHALDGXXXXXXXXXX 277
             NL +L++     ++  AEG  +L++   L +L   Q + L  L D   +           
Sbjct:   341 NLPMLEILFFHKNATNAEGIKQLAKCTRLLFLDLGQNSDLVHLNDSEFNALPSLQRLNLN 400

Query:   278 XXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
                   I  + ++  ++L  + L +N         F+ L +L  L LS N +TE  +N  
Sbjct:   401 KCQLSFISNKTWSSLQNLTILDLSHNKFKSFPDFAFSPLKRLEFLSLSRNPITE--LNNL 458

Query:   338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
              FSGL  L  LN+A   +  +D   F     L+VL L +N I +++  TF  L  LHTLI
Sbjct:   459 AFSGLFSLKELNLAACWIVTIDRYSFTQFPNLEVLDLGDNNIRTLNHGTFQPLKKLHTLI 518

Query:   398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPK 456
             +S+N+L+ +ESN+   LT L  L L  N L Y  ++       L    L  NK+T E  +
Sbjct:   519 LSHNRLEIMESNAFSGLTGLRYLDLMYNSLSYFHKHHFMGLEKLLVLKLGFNKITYETTR 578

Query:   457 VLR-----NLHSLKTLDL-GDNL-ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
              L+      L SLK L+L G    I  +       L  L  L L +N    +    F+ L
Sbjct:   579 TLQYPPFMKLKSLKQLNLEGQKHGIQVVPRNFFQGLSSLQELLLGKNPSVFLDHHQFDPL 638

Query:   510 SVLTILNLASNKIQK----VEAGTFDNNSNLVAIRLDGNYLTD-IGGLFPKLPNLVWLNI 564
               LT L+++  K       + +  F N   L  +RL+ N L   + G+F  L NL   ++
Sbjct:   639 INLTKLDISGTKDGDRSLYLNSSLFQNLKRLKVLRLENNNLESLVPGMFSSLQNLQVFSL 698

Query:   565 SENLLEWFDYALIP--ADLQWLDIHGNQI 591
               N L+  + + +     L + D++GN++
Sbjct:   699 RFNNLKVINQSHLENLKSLMFFDVYGNKL 727

GO:0002237 "response to molecule of bacterial origin" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA;ISO

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0009615 "response to virus" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA;ISO

GO:0034178 "toll-like receptor 13 signaling pathway" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043408 "regulation of MAPK cascade" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA;ISO

ZFIN|ZDB-GENE-040220-4 tlr21 "toll-like receptor 21" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
 Identities = 128/463 (27%), Positives = 205/463 (44%)

Query:   491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
             L ++ +NI  +    F+ L  LT L L +N I  ++   F+N  +L  + L  N ++ + 
Sbjct:    65 LTISHSNIEYVQSQSFDHLPNLTALILDANHITNIDKDAFNNLHHLQTLNLSCNNISFLH 124

Query:   551 -GLFPKLPNLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISELGNYFE-IESQLRL 606
               +F  L NL  L +  N L   D  L  +  +L+ LD+  N +    +  E I +   L
Sbjct:   125 RDVFSDLHNLTQLLLGSNKLTNPDKYLFSSLTNLKILDLRRNHLYNFSSVVESITNLTSL 184

Query:   607 TYFDASSNKLTELTGNA-IPHSVENLFLTNNLISKVQ-PYTFFMK---------PNLTRV 655
                D S NKLT L  +  +P S+  L+L +N +  +    +F M           NL   
Sbjct:   185 IKLDLSFNKLTTLQHSTHLPESLALLYLGDNKLKTLGCDKSFLMNVKKLDLSDNKNLASK 244

Query:   656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLV 715
               +G +L+NI    LR + +   K +   Y   +P+  D        +S  K +N   L 
Sbjct:   245 SFLGLKLENITYLRLRFTNISIFKLLT--YPNVHPWHID--------FSGLKLKNSHALS 294

Query:   716 DLDTVTCKLLYNRAN-----PAILLKE-----AHSNQF-LCEYETNCAPLCHCCDFDACD 764
              L    C L+ N ++     P +LL+        +N F  C   T    L    +  +  
Sbjct:   295 SL----CVLMRNHSHKHLQIPKMLLQSNSIGALKNNTFRYCPSITREMDLSRN-ELKSAG 349

Query:   765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI 824
             C +   +N T    +  E N +   T    N+    I    T L    NRI  +  ++F 
Sbjct:   350 C-LQFLHNQTQLKSLKMEHNHLTKLTSC--NKA--EIHNSLTNLSYRYNRILQISGYAFS 404

Query:   825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
                KL+IL LN + +  + +K  +GLK+L  LRLD+N L++I    FE L NL+ L L+ 
Sbjct:   405 NTPKLEILELNINIIAYMDHKALSGLKDLKTLRLDNNLLSDIYNDSFEDLTNLKTLNLRN 464

Query:   885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSIT 927
             N+I  I N TF +L+ L +L L  N+I+     H    + S+T
Sbjct:   465 NEIAVIFNYTFQNLSKLDILDLGGNKISQLKP-HAFDGLYSLT 506

GO:0007165 "signal transduction" evidence=IEA

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IDA

ZFIN|ZDB-GENE-040220-5 tlr22 "toll-like receptor 22" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
 Identities = 166/688 (24%), Positives = 286/688 (41%)

Query:   101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGXXXXXXXXXXXHNTDWSTMSLDISHN 160
             S +  G+F +L +L DL++   ++  +S G  RG              D + +S+ I  +
Sbjct:    95 SKIQDGAFGSLFNLTDLNLASNRLNAVSNGMLRGLTNLLVL-----RLDRNYISV-IKES 148

Query:   161 VFTXXXXXXXXXXXXMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
              F+             N +  + D    P+ +  YL       +    F+ S   T    
Sbjct:   149 AFSTLHSLQVLNLSK-NHLRHIDDVK--PVLASLYLEELYIGSNYFNVFNSSELSTKP-- 203

Query:   221 INLRVLDLSNNSFDSLPAEG--FSRLSRLQELYL--QGNILTFLADHALDGXXXXXXXXX 276
             ++L+ LDLSNN F +       F  L+ L   Y    G +   + + +            
Sbjct:   204 LSLKRLDLSNNRFAAFQLTNNIFPTLNHLDLSYCGHNGTMAWNVTEKSYLASVKTLYFMD 263

Query:   277 XXXXXXXIPPELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLI-VLDLSNNELTEEWV 334
                        L + +  L ++ L  N  +N  +  + +V + ++ VL L   ++    +
Sbjct:   264 VNMSIQTADNVLQSFNNTLNKIRLNGNVRLNKTSL-LLSVCSPMLRVLRLIATKIKH--L 320

Query:   335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH 394
                 F     L  L++  N+++ L  S+F+   +L+ L L+ N++  +  N+F  L++L 
Sbjct:   321 TNHMFDPCSELSELDLGGNEISNLSQSMFRGFKQLKKLQLQINKLTRV-TNSFQILTSLE 379

Query:   395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
              + +S N + ++  N   +LT +  L L +N++  I     K+  SL+   L  N L +I
Sbjct:   380 FIDLSRNHIHKLSCNDFANLTQVKTLYLYSNKISSIRSCLFKDLKSLEVLRLGTNNLLKI 439

Query:   455 PKVLRN-LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
               V  N  + LK L L  N ++ I + +  +L QL  L L +N IS I    F  L  LT
Sbjct:   440 DDVFSNGPYFLKELQLSYNKLSLIKSHTFGNLPQLNNLSLEDNQISEIEGYAFGGLENLT 499

Query:   514 ILNLASNKIQ----KVEAGTFDNNSNLVAIRLDGNYLTDIGG-----LFPKLPNLVWLNI 564
              L L+SNKI           F    NL  + L  N ++         LF  L NL  L++
Sbjct:   500 SLFLSSNKITGKTLTTHPNVFSGMPNLQNLDLFANSISFAYDKLKYPLFKDLKNLRELSL 559

Query:   565 -SENL-LEWFDYALIP--ADLQWLDIHGNQISELG-NYFEIESQLRLTYFDASSNKLTEL 619
              S+   +      L+   + LQ   I    +++L  N F    QL   + D S N L E 
Sbjct:   560 YSQRRGIGQLPSNLLEGLSSLQMFYIGNTNLNQLNPNLFNFTPQL--WFLDLSKNALRE- 616

Query:   620 TGNAIP----HSVENLFLTNNLISKVQ--PYTFFMKPNLTRVDLV---GNRLKNINQTAL 670
               +AIP    H + NL  T  +IS+ Q     F +  NL ++  +   GN + ++N+T +
Sbjct:   617 -DDAIPPELFHPIPNL--TKLIISRTQLRSLNFLLGANLNKLSTLRASGNEIDSVNETLI 673

Query:   671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRAN 730
             +  P  +   + D  +  N F CDCN  +   ++  K+     +  L   TC   Y R  
Sbjct:   674 KSLPRLA---VLD--LQNNTFTCDCNNAFFIDWA--KKNESTQVYYLSRYTCS--YPRTL 724

Query:   731 PAILLKEAHSNQFLCEYETNCAPLCHCC 758
                 L E +++   C +  N   +C  C
Sbjct:   725 RGTSLAEFNTDS--CTF--NWDYICFVC 748

GO:0007165 "signal transduction" evidence=IEA

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|F1ND28 TLR21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
 Identities = 59/147 (40%), Positives = 96/147 (65%)

Query:  1079 DDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVE 1138
             +++  L+D+FVSY+S DE++V ++L P LE+G  A++LCLH+R+F  G  I D IV AV 
Sbjct:   800 EEKCYLYDSFVSYNSADESWVLQKLVPELEHG--AFRLCLHHRDFQPGRSIIDNIVDAVY 857

Query:  1139 SSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIV-ILLGEVPQKDLDP--DIRLY 1195
             +SR+T+ V+S ++++SEWC  E + A +++L  ++ ++V +LL +V   +L     +R  
Sbjct:   858 NSRKTVCVVSRSYLRSEWCSLEVQLASYRLLDERRDILVLVLLEDVGDAELSAYHRMRRV 917

Query:  1196 LKSNTYLQW-----GDKLFWEKLKFAL 1217
             L   TYL+W        LFW +LK AL
Sbjct:   918 LLRRTYLRWPLDPAAQPLFWARLKRAL 944

GO:0016021 "integral to membrane" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0034178 "toll-like receptor 13 signaling pathway" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1269
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	5e-35
pfam01582	135	pfam01582, TIR, TIR domain	8e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-17
pfam13676	102	pfam13676, TIR_2, TIR domain	5e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-16
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PHA03420	137	PHA03420, PHA03420, E4 protein; Provisional	0.002
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  130 bits (328), Expect = 5e-35
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 1085 FDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTI 1144
            +D F+SYS K+   V  E    L      Y LC+   +F  GG   + I +A+E SR  I
Sbjct: 2    YDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAI 59

Query: 1145 MVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQ--KDLDPDIRLYLKSNTY 1201
            +VLS N+ +SEWC  E  +A    L  G  R+I I    +P   +      R   K N Y
Sbjct: 60   VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKN-Y 118

Query: 1202 LQWGDKL---FWEKLKFALPD 1219
            L+W +     FW+K  +A+P 
Sbjct: 119  LKWPEDEKEQFWKKALYAVPS 139

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  106 bits (267), Expect = 8e-27
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 1087 AFVSYSSKD-EAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIM 1145
             FVS+S KD        L   LE      KLC+  R+   G  I + + +A+E SRR I+
Sbjct: 1    VFVSFSGKDDRDTFVSHLLKELEEK--GIKLCIDDRDELPGESILENLFEAIEKSRRAIV 58

Query: 1146 VLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDPD-IRLYLKSNTYLQ 1203
            + S N+  SEWC  E        L  G K++I+ +  +V   D+ P   +        L+
Sbjct: 59   IFSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLK 118

Query: 1204 W-GDKL----FWEKL 1213
            W GDK     FW+K 
Sbjct: 119  WSGDKEDKIRFWKKA 133

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  107 bits (269), Expect = 2e-23
 Identities = 153/531 (28%), Positives = 231/531 (43%), Gaps = 73/531 (13%)

Query: 153 MSLDISHNVFTDELQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211
           +S  IS  +F   L  +++++LS N +   +PD IF    SL YLNL+ N  +       
Sbjct: 81  ISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS 138

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
                     NL  LDLSNN             S L+ L L GN+L     ++L  L SL
Sbjct: 139 IP--------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 272 TVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
             L L+ N LV  IP EL  Q + LK +YL  N+++   P     LT L  LDL  N LT
Sbjct: 191 EFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
                 ++   L  L  L +  NK++  +  SIF  L +L  L L +N +          
Sbjct: 250 GPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           L NL  L + +N        +L SL  L VL L +N+        L    +L    L+ N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 450 KLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
            LT EIP+ L +  +L  L L  N +      SL +   L  +RL +N+ S      F K
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 509 LSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
           L ++  L++++N +Q ++ +  +D                        +P+L  L+++ N
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWD------------------------MPSLQMLSLARN 462

Query: 568 -----LLEWFDYALIPADLQWLDIHGNQISE-----LGNYFEIESQLRLTYFDASSNKLT 617
                L + F        L+ LD+  NQ S      LG+  E+  QL+L     S NKL+
Sbjct: 463 KFFGGLPDSFG----SKRLENLDLSRNQFSGAVPRKLGSLSEL-MQLKL-----SENKLS 512

Query: 618 ELTGNAIPHSVE------NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
                 IP  +       +L L++N +S   P +F   P L+++DL  N+L
Sbjct: 513 ----GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 1e-17
 Identities = 116/411 (28%), Positives = 174/411 (42%), Gaps = 67/411 (16%)

Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
            L SL  LDL  N++     +    L++L YL L QNKLS     S  +         L 
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLI 287

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
            LDLS+NS      E   +L  L+ L+L  N  T     AL  L  L VL L  N     
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG-LH 343
            P      ++L +    NN               L VLDLS N LT E       SG L 
Sbjct: 348 IP------KNLGK---HNN---------------LTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 344 RLVVLNIAYNKMNKLDSSIFKDL---YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
           +L++ +      N L+  I K L     L+ + L++N       + F  L  ++ L +SN
Sbjct: 384 KLILFS------NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Query: 401 NKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVL 458
           N L+ RI S   D + +L +LSL  N+  +        S  L++  L+ N+ +  +P+ L
Sbjct: 438 NNLQGRINSRKWD-MPSLQMLSLARNKF-FGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA 518
            +L  L  L L +N ++      L+S  +L  L L+ N +S      F ++ VL+ L+L+
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 519 SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
            N                   +L G    ++G     + +LV +NIS N L
Sbjct: 556 QN-------------------QLSGEIPKNLG----NVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 81/310 (26%), Positives = 130/310 (41%), Gaps = 9/310 (2%)

Query: 365 DLYRLQVLHLENNQIESIH--RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
            L RL  L L +    S         +L  L +L ++ N+L R   + L  LT L+ L L
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL-RSNISELLELTNLTSLDL 123

Query: 423 DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482
           DNN +  I        ++L++  L+ NK+  +P  LRNL +LK LDL  N ++++  L  
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
           N L  L  L L+ N IS++     E LS L  L+L++N I ++   +  N  NL  + L 
Sbjct: 184 N-LSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELS 240

Query: 543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
            N L D+      L NL  L++S N +          +L+ LD+ GN +S       +  
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
            L     +                   N  + +N  +   P    +  +L  +  + N L
Sbjct: 301 LLLELLLNLLLTLKALELKLNSILL--NNNILSNGET-SSPEALSILESLNNLWTLDNAL 357

Query: 663 KNINQTALRI 672
              N     +
Sbjct: 358 DESNLNRYIV 367

Length = 394

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 1088 FVSYSSKDEAFVAEELAPILE-NGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMV 1146
            F+SY+S D  + AE LA  LE  G    +      + P G    D I +A+ S+   +++
Sbjct: 2    FISYASADREW-AEWLADALEAAG---IR-VWLDWDIPPGEDWRDEIEEALRSADVVLVL 56

Query: 1147 LSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVP 1184
            LS  ++ S WCR E+ +A        KRLI + L +  
Sbjct: 57   LSPAYLASPWCRAEWGAAL----ERGKRLIPVRLEDCE 90

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 80.8 bits (199), Expect = 7e-16
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 13/286 (4%)

Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
              L  L  L L  N L       L  L +LT L+L  NN+ +IPP +     +LKE+ L
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
            +N I  L   + N L  L  LDLS N+L++        S L  L  L+++ NK++ L  
Sbjct: 148 SDNKIESLPSPLRN-LPNLKNLDLSFNDLSD---LPKLLSNLSNLNNLDLSGNKISDLPP 203

Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
            I + L  L+ L L NN I  +  ++ ++L NL  L +SNNKL+ +   S+ +L+ L  L
Sbjct: 204 EI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETL 260

Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG---DNLITEI 477
            L NN++  I  ++L + T+L++  L+GN L+    ++  L  L  L L         E+
Sbjct: 261 DLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318

Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
              S+   + +     T +  +         L  L      SN  +
Sbjct: 319 KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNR 364

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 91/340 (26%), Positives = 128/340 (37%), Gaps = 69/340 (20%)

Query: 164 DELQSLESLDLSMNSIWT-----LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
            +L  L+ L L  N++       L  A+  P  SL  L L+ N+   +     S      
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSR---LQELYLQGN-----ILTFLADHALDGLNS 270
            G  L+ LDLS+N+           L R   LQEL L  N      L  LA    D   +
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 271 LTVLNLSVNNLVNIPPE----LFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLIV 321
           L  L L  N L     E        +RDLKE+ L NN I       LA G       L V
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEV 197

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           LDL+NN LT+E   A+  +                         L  L+VL+L +N +  
Sbjct: 198 LDLNNNGLTDE--GASALAE--------------------TLASLKSLEVLNLGDNNL-- 233

Query: 382 IHRNTFASLSNLHT-LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
               T A  + L + L+  N  L  + S S + +T      L     E + E       S
Sbjct: 234 ----TDAGAAALASALLSPNISLLTL-SLSCNDITDDGAKDL----AEVLAEKE-----S 279

Query: 441 LQDFHLNGNKLTE-----IPKVLR-NLHSLKTLDLGDNLI 474
           L +  L GNK  E     + + L    + L++L + D+  
Sbjct: 280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 29/60 (48%), Positives = 35/60 (58%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           NL+ LDLSNN    +P   F  L  L+ L L GN LT ++  A  GL SL  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
            L+ L L NN++  I    F  L NL  L +S N L  I   +   L +L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 853 LIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
           L  L L +NRLT I    F+ L NL+ L L  N +  IS   F  L  L+ L L  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
            L+ L L  N LT + D A  GL +L VL+LS NNL +I PE F+    L+ + L  N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
            L  L+++ N++  +    FK L  L+VL L  N + SI    F+ L +L +L +S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
           LK + L NN + V+  G F  L  L VLDLS N LT   ++   FSGL  L  L+++ N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS--ISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
           NL +L +SNN+L  I   +   L  L VL L  N L  I   A     SL+   L+GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 318 QLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377
            L  LDLSNN LT   +    F GL  L VL+++ N +  +    F  L  L+ L L  N
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 378 QI 379
            +
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
           +LK+LDL +N +T I + +   L  L  L L+ NN+++IS   F  L  L  L+L+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           +L  L+LS N L  IP   F    +LK + L  N++  ++P  F+ L  L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLI 474
           L  L L NN L  I + A K   +L+   L+GN LT I P+    L SL++LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L+ L L+++ +  I +  F GL  L +L L  N LT I    F  L +LR L L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 81/300 (27%), Positives = 111/300 (37%), Gaps = 64/300 (21%)

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHTLIMSNNKLKRIESN------ 409
           + +   L  LQVL LE N +        AS      +L  L +S N+  RI         
Sbjct: 16  TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75

Query: 410 SLDSLTALSVLSLDNNELEY----IEENALKNSTSLQDFHLNGNKLTE-----IPKVLRN 460
            L     L  L L +N L      + E+ L++S+ LQ+  LN N L +     + K L++
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS-LQELKLNNNGLGDRGLRLLAKGLKD 134

Query: 461 L-HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
           L  +L+ L LG N       L   S   LA                      L  LNLA+
Sbjct: 135 LPPALEKLVLGRN------RLEGASCEALAK--------------ALRANRDLKELNLAN 174

Query: 520 NKIQKVEAGT------FDNNSNLVAIRLDGNYLTDIG-----GLFPKLPNLVWLNISENL 568
           N I   +AG          N NL  + L+ N LTD G          L +L  LN+ +N 
Sbjct: 175 NGIG--DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

Query: 569 L-EWFDYALIPA------DLQWLDIHGNQISELGNYFEIESQ---LRLTYFDASSNKLTE 618
           L +    AL  A       L  L +  N I++ G     E       L   D   NK  E
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
           L L+ N ++ I  G F+ L  L +L+L+ N +  +    F    +L ++ L GN L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 80/318 (25%), Positives = 121/318 (38%), Gaps = 67/318 (21%)

Query: 248 QELYLQGNIL-TFLADHALDGLNSLTVLNLSVNNLVN-----IPPELFNQSRDLKEVYLQ 301
            +L L+G +L T  A   L  L  L VL L  N L       +   L  Q   LKE+ L 
Sbjct: 1   LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLS 59

Query: 302 NN------SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
            N                     L  LDLS+N L  +         L R           
Sbjct: 60  LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--GCGVLESLLRS---------- 107

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA-----SLSNLHTLIMSNNKLK----RI 406
                        LQ L L NN +        A         L  L++  N+L+      
Sbjct: 108 -----------SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156

Query: 407 ESNSLDSLTALSVLSLDNNEL-----EYIEENALKNSTSLQDFHLNGNKLTE-----IPK 456
            + +L +   L  L+L NN +       + E  LK + +L+   LN N LT+     + +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAE 215

Query: 457 VLRNLHSLKTLDLGDNLIT-----EINNLSLNSLHQLAGLRLTENNISN-----ISKGVF 506
            L +L SL+ L+LGDN +T      + +  L+    L  L L+ N+I++     +++ + 
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275

Query: 507 EKLSVLTILNLASNKIQK 524
           EK S L  L+L  NK  +
Sbjct: 276 EKES-LLELDLRGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
           +L+   L+ N+LT IP    + L +LK LDL  N +T I+  + + L  L  L L+ NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNP 932
           NL+ L L  N++  I +  F  L +LKVL L  N +TS    A   L S ++S+ L+ N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS-LRSLDLSGNN 59

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 50.1 bits (119), Expect = 7e-06
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 22/225 (9%)

Query: 417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE 476
           ++ L LDNNEL+ + EN   N   ++  + N N+LT IP  L +  +++ ++L  N ITE
Sbjct: 201 ITTLILDNNELKSLPENLQGN---IKTLYANSNQLTSIPATLPD--TIQEMELSINRITE 255

Query: 477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
           +     ++L  L    L  N IS + + + E+L  L++ +   N I+ + A      S +
Sbjct: 256 LPERLPSALQSLD---LFHNKISCLPENLPEELRYLSVYD---NSIRTLPAHL---PSGI 306

Query: 537 VAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN 596
             + +  N LT +    P  P L  L   EN L     +L P  LQ LD+  NQI+ L  
Sbjct: 307 THLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPPE-LQVLDVSKNQITVLPE 363

Query: 597 YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV 641
                    +T  D S N LT L  N +P +++ +  + N + ++
Sbjct: 364 TLPPT----ITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRL 403

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 34/192 (17%)

Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
           FT +L  +  LD+S N++    ++    + SL  L+L +NK       SF +        
Sbjct: 424 FT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK------- 475

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
            L  LDLS N F          LS L +L L  N L+      L     L  L+LS N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
               P  F++                       VL+Q   LDLS N+L+ E         
Sbjct: 536 SGQIPASFSE---------------------MPVLSQ---LDLSQNQLSGEI--PKNLGN 569

Query: 342 LHRLVVLNIAYN 353
           +  LV +NI++N
Sbjct: 570 VESLVQVNISHN 581

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           +L+SLDLS N +  +PD  F  L +L  L+L+ N L++++  +FS         +LR LD
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL------PSLRSLD 54

Query: 228 LSNNSF 233
           LS N+ 
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
             L L  NR+ V+   +F G   L++L L+ +++ +I  + F+GL  L  L L  N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 35/198 (17%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           +++ ++LS+N I  LP+ +   LQS   L+L  NK+S +        +       LR L 
Sbjct: 242 TIQEMELSINRITELPERLPSALQS---LDLFHNKISCLP-------ENLPEE--LRYLS 289

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL-VNIPP 286
           + +NS  +LPA      S +  L +Q N LT L +    GL +L     ++ +L  ++PP
Sbjct: 290 VYDNSIRTLPAH---LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPP 346

Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE--EWVNAATFSGLHR 344
           EL           +  N I VL   +   +T    LD+S N LT   E + AA       
Sbjct: 347 ELQVLD-------VSKNQITVLPETLPPTITT---LDVSRNALTNLPENLPAA------- 389

Query: 345 LVVLNIAYNKMNKLDSSI 362
           L ++  + N + +L  S+
Sbjct: 390 LQIMQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
           L  L+L++N++  +  G F    NL  + L GN LT I    F  LP+L  L++S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
           T+L+   L+ N++T++P  L NL +L+TLDL  N IT+++ LS
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           L L+N  +     N  + L +L ++ +S N ++     SL S+T+L VL L  N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 432 ENALKNSTSLQDFHLNGNKLT-EIPKVL--RNLH 462
             +L   TSL+  +LNGN L+  +P  L  R LH
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 26/163 (15%)

Query: 113 DLKDLSVEFCKIGNLS----AGSFRGLRKLKTLTLRTHN-TDWSTMSL--DISHNVFTDE 165
            L+ L +   ++   S    A + R  R LK L L  +   D    +L   +  N     
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN----- 192

Query: 166 LQSLESLDLSMNSIWTLPDAIFC----PLQSLSYLNLTQNKLSNV--ATFSFSNYDTARC 219
             +LE LDL+ N +     +        L+SL  LNL  N L++   A  + +       
Sbjct: 193 -CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRL----SRLQELYLQGNILT 258
              L  L LS N      A+  + +      L EL L+GN   
Sbjct: 252 ---LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 156 DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
            I    F   L +L+ LDLS N++ ++    F  L SL  L+L+ N L
Sbjct: 14  VIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
           + + SI    F+  ++L ++ + ++ L  I S +  + ++L+ +++ ++ L  I E A  
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77

Query: 437 NSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINN 479
           N +SL    +  + LT I      N  SLK++ +  + +T I +
Sbjct: 78  NCSSLTSITIP-SNLTTIGSYAFSNC-SLKSITIPSS-VTTIGD 118

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408
            L+ L L NNQI  +     ++L NL TL +S NK+  +  
Sbjct: 2   NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 1192 IRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRH-- 1249
            + LYL    +  W D  ++ +L     +  + QR   N       ++    H+H HRH  
Sbjct: 3    VHLYLAPPLHHPW-DTPYYRRLLDGRAENQHIQREGGNHRTWDPADYLDRPHHHPHRHQQ 61

Query: 1250 ----HQHHHNNTSQEK 1261
                 Q   +   Q  
Sbjct: 62   DDHHLQDRQHLPQQHL 77

Length = 137

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.1 bits (98), Expect = 0.002
 Identities = 83/310 (26%), Positives = 132/310 (42%), Gaps = 61/310 (19%)

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           L++  + + TLPD   C    ++ L +  N L+++                LR L++S N
Sbjct: 206 LNVGESGLTTLPD---CLPAHITTLVIPDNNLTSLPALP----------PELRTLEVSGN 252

Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL-DGLNSLTVLNLSVNNLVNIPPELFN 290
              SLP         L EL +  N LT L   AL  GL  L +    + +L  +PP    
Sbjct: 253 QLTSLPVLP----PGLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTSLPVLPP---- 302

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
               L+E+ + +N +  L P + + L +L      NN+LT         SGL  L V + 
Sbjct: 303 ---GLQELSVSDNQLASL-PALPSELCKLWAY---NNQLTSL---PTLPSGLQELSVSDN 352

Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
               +  L S ++K       L   NN++ S+     A  S L  LI+S N+L       
Sbjct: 353 QLASLPTLPSELYK-------LWAYNNRLTSLP----ALPSGLKELIVSGNRL------- 394

Query: 411 LDSLTALSVLSLDNNELEYIEENALKN----STSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
               T+L VL  +  EL  +  N L +     + L    +  N+LT +P+ L +L S  T
Sbjct: 395 ----TSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449

Query: 467 LDLGDNLITE 476
           ++L  N ++E
Sbjct: 450 VNLEGNPLSE 459

Length = 788

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 0.003
 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 31/226 (13%)

Query: 294 DLKEVY--LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351
           D K++   L++N+      G   VL   I LD+  +E+ E  ++   F G+  L+ L   
Sbjct: 517 DAKDICDVLEDNT------GTKKVLG--ITLDI--DEIDELHIHENAFKGMRNLLFLKFY 566

Query: 352 YNKMNKLD------SSIFKDL-YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
             K ++           F  L  +L++L  +   +  +  N      NL  L M  +KL+
Sbjct: 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRP--ENLVKLQMQGSKLE 624

Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG-NKLTEIPKVLRNLHS 463
           ++  + + SLT L  + L  ++    E   L  +T+L+   L+  + L E+P  ++ L+ 
Sbjct: 625 KL-WDGVHSLTGLRNIDLRGSK-NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682

Query: 464 LKTLDLG--DNLITEINNLSLNSLHQL-----AGLRLTENNISNIS 502
           L+ LD+   +NL      ++L SL++L     + L+   +  +NIS
Sbjct: 683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 182 LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGF 241
           +P+ I   L+ L  +NL+ N +      S  +  +      L VLDLS NSF+    E  
Sbjct: 434 IPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITS------LEVLDLSYNSFNGSIPESL 486

Query: 242 SRLSRLQELYLQGNILTFLADHALDGL 268
            +L+ L+ L L GN L+     AL G 
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1269
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
KOG0472|consensus	565		99.98
KOG4237|consensus	498		99.97
KOG0472|consensus	565		99.97
KOG0618|consensus	1081		99.96
KOG0618|consensus	1081		99.96
KOG0444|consensus	1255		99.94
KOG0444|consensus	1255		99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
PLN03194	187	putative disease resistance protein; Provisional	99.47
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.35
KOG0617|consensus	264		99.29
KOG0617|consensus	264		99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG3207|consensus	505		99.05
KOG1909|consensus	382		99.04
KOG1259|consensus	490		99.04
KOG3207|consensus	505		98.97
KOG0531|consensus	414		98.97
KOG0531|consensus	414		98.95
PLN03150	623	hypothetical protein; Provisional	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG1259|consensus	490		98.93
KOG1909|consensus	382		98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
KOG0532|consensus	722		98.76
KOG0532|consensus	722		98.73
KOG4658|consensus	889		98.64
KOG4658|consensus	889		98.33
KOG1859|consensus	1096		98.3
PLN03150	623	hypothetical protein; Provisional	98.22
KOG1644|consensus	233		98.12
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.1
KOG1859|consensus	1096		98.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.08
KOG1644|consensus	233		98.07
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.06
KOG4579|consensus	177		98.05
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.05
KOG2982|consensus	418		98.04
KOG3678|consensus	832		97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.9
KOG2120|consensus	419		97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG2982|consensus	418		97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
KOG2120|consensus	419		97.71
KOG4579|consensus	177		97.7
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.6
KOG4341|consensus	483		97.59
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.35
KOG4341|consensus	483		97.25
KOG3665|consensus	699		97.07
KOG3665|consensus	699		96.83
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.82
KOG2123|consensus	388		96.39
KOG2123|consensus	388		96.26
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.05
KOG1947|consensus	482		95.88
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.73
KOG2739|consensus	260		95.57
KOG2739|consensus	260		95.41
KOG1947|consensus	482		95.19
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	94.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.59
smart00370	26	LRR Leucine-rich repeats, outliers.	93.59
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	93.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.11
smart00370	26	LRR Leucine-rich repeats, outliers.	92.19
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.19
KOG4308|consensus	478		90.5
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.29
KOG0473|consensus	326		90.27
KOG4308|consensus	478		88.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-47  Score=509.91  Aligned_cols=535  Identities=25%  Similarity=0.267  Sum_probs=304.8

Q ss_pred             ceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCC-CCChhhccCCccCceeecccccCCCCccceeccchhhh
Q psy5670          85 YTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT  163 (1269)
Q Consensus        85 ~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~-~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~  163 (1269)
                      +++.|+|+++.+    +...+.+|..+++|++|+|++|++. .+|...|.++++|++|+|++|+..     ..+ |.   
T Consensus        70 ~v~~L~L~~~~i----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-----~~~-p~---  136 (968)
T PLN00113         70 RVVSIDLSGKNI----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-----GSI-PR---  136 (968)
T ss_pred             cEEEEEecCCCc----cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-----ccc-Cc---
Confidence            477888888873    3333558889999999999999885 576666667777777777654431     011 11   


Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      +.+++|++|+|++|.+....+..++.+++|++|+|++|.+.+..+..+..      +++|++|+|++|.+....+..+++
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~~p~~l~~  210 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN------LTSLEFLTLASNQLVGQIPRELGQ  210 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh------CcCCCeeeccCCCCcCcCChHHcC
Confidence            34566777777777666433334566666666666666665444433322      456666666666665554455666


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +++|++|++++|.+.+..+..++++++|++|++++|.+....+..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus       211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  290 (968)
T PLN00113        211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD  290 (968)
T ss_pred             cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence            66666666666666655555566666666666666655544444455555666666665555554455555555555555


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL  403 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  403 (1269)
                      +++|.+.+  ..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+                        
T Consensus       291 Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l------------------------  344 (968)
T PLN00113        291 LSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF------------------------  344 (968)
T ss_pred             CcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC------------------------
Confidence            55555543  1233444455555555555555444444444444444444444444                        


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-CchhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSL  482 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~  482 (1269)
                      .+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+
T Consensus       345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~  424 (968)
T PLN00113        345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF  424 (968)
T ss_pred             cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence            4444444444444444444444444444444444445555555555443 344444555555555555555555444455


Q ss_pred             hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccc-cCCcCCCCCCCcE
Q psy5670         483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD-IGGLFPKLPNLVW  561 (1269)
Q Consensus       483 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-l~~~~~~l~~L~~  561 (1269)
                      ..++.|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+ ..++|+.|++++|+++. +|..+..+++|+.
T Consensus       425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCE
Confidence            555555555555555533333334455555555665555555444333 23556666666665552 3444555555555


Q ss_pred             EEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccc
Q psy5670         562 LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLIS  639 (1269)
Q Consensus       562 L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~  639 (1269)
                      |++++|++..    .+|.                   .+..+++|++|+|++|.+++..+..+.  ++|+.|+|++|+++
T Consensus       504 L~Ls~N~l~~----~~p~-------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        504 LKLSENKLSG----EIPD-------------------ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             EECcCCccee----eCCh-------------------HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence            5555554441    1111                   123345667777777777665554443  47888888888888


Q ss_pred             cccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccc
Q psy5670         640 KVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD  694 (1269)
Q Consensus       640 ~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  694 (1269)
                      +..|..+.++++|+.|++++|++.+.-+..-      ....+....+.+||..|.
T Consensus       561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~------~~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTG------AFLAINASAVAGNIDLCG  609 (968)
T ss_pred             ccCChhHhcCcccCEEeccCCcceeeCCCcc------hhcccChhhhcCCccccC
Confidence            8888888888999999999999886333211      111233345678887774

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.3e-47  Score=502.42  Aligned_cols=321  Identities=26%  Similarity=0.281  Sum_probs=172.8

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcc-cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF-LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY  299 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  299 (1269)
                      .+++.|+|++|.++...+..|..+++|+.|+|++|.+.+ ++...+.++++|++|++++|++++..+.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            367777777777776666667777777777777777664 3333444677777777777766542221  3356666666


Q ss_pred             eeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcc
Q psy5670         300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI  379 (1269)
Q Consensus       300 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  379 (1269)
                      |++|.+.+..+..++++++|++|++++|.+.+  ..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            66666665555556666666666666666544  2244555566666666666655555555555555555555555555


Q ss_pred             cccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-Cchhhh
Q psy5670         380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVL  458 (1269)
Q Consensus       380 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l  458 (1269)
                      ....+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+.++++|++|++++|.+. .+|..+
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence            5444444555555555555555555544545555555555555555555444444445555555555555443 334444


Q ss_pred             cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccE
Q psy5670         459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA  538 (1269)
Q Consensus       459 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~  538 (1269)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|+.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            44455555555555444444444444444444444444442222223344444444444444444433333333333444


Q ss_pred             EEccccc
Q psy5670         539 IRLDGNY  545 (1269)
Q Consensus       539 L~L~~n~  545 (1269)
                      |++++|.
T Consensus       385 L~l~~n~  391 (968)
T PLN00113        385 LILFSNS  391 (968)
T ss_pred             EECcCCE
Confidence            4443333

>KOG4194|consensus

Probab=100.00  E-value=4.6e-45  Score=403.16  Aligned_cols=425  Identities=28%  Similarity=0.398  Sum_probs=346.2

Q ss_pred             EEEccCCcccccCcccccCC--CCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCC
Q psy5670         395 TLIMSNNKLKRIESNSLDSL--TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN  472 (1269)
Q Consensus       395 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n  472 (1269)
                      .|+.+++.+..+....+.+.  +.-+.|++++|++..+....|.++++|+++++.+|.++.+|.......+|+.|+|.+|
T Consensus        56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N  135 (873)
T KOG4194|consen   56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN  135 (873)
T ss_pred             eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc
Confidence            44555555544332222222  2346799999999999999999999999999999999999987666677999999999


Q ss_pred             CCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-C
Q psy5670         473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-G  551 (1269)
Q Consensus       473 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~  551 (1269)
                      .|+.+....++.++.|+.||||.|.|.+|+...|..-.++++|+|++|.|+.+..+.|.++.+|..|.|+.|+++.+| .
T Consensus       136 ~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r  215 (873)
T KOG4194|consen  136 LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR  215 (873)
T ss_pred             ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence            999999999999999999999999999999888888889999999999999999999999999999999999999998 6


Q ss_pred             cCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCcc
Q psy5670         552 LFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVE  629 (1269)
Q Consensus       552 ~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~  629 (1269)
                      .|..++.|+.|+|..|+|+....                       ..+.++.+|+.|.|..|.|..+....+-  +.++
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~-----------------------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEG-----------------------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             Hhhhcchhhhhhccccceeeehh-----------------------hhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            78889999999999988763321                       1233444555555555555554433332  4667


Q ss_pred             EEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccccc
Q psy5670         630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER  709 (1269)
Q Consensus       630 ~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~  709 (1269)
                      .|+|+.|+++.+..+.+.+++.|+.|+||+|.|+.|...++.                                      
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--------------------------------------  314 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--------------------------------------  314 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--------------------------------------
Confidence            777777777777777777888888888888887765443220                                      


Q ss_pred             CCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecC
Q psy5670         710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCS  789 (1269)
Q Consensus       710 ~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~  789 (1269)
                                                       |                         |                    
T Consensus       315 ---------------------------------f-------------------------t--------------------  316 (873)
T KOG4194|consen  315 ---------------------------------F-------------------------T--------------------  316 (873)
T ss_pred             ---------------------------------h-------------------------c--------------------
Confidence                                             0                         0                    


Q ss_pred             CCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCc-
Q psy5670         790 TGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRG-  868 (1269)
Q Consensus       790 ~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~-  868 (1269)
                                   ..+++|+|++|+|+.++++.|..+..|++|.|++|.|..+..++|.++++|++|||++|.|+.... 
T Consensus       317 -------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  317 -------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             -------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence                         124789999999999999999999999999999999999999999999999999999999987643 


Q ss_pred             --ccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHH
Q psy5670         869 --YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRD  945 (1269)
Q Consensus       869 --~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~  945 (1269)
                        .+|.+|++|+.|.|.+|+|.+|+..+|.+++.|+.|||.+|.|.+|.+. |....|+.|-+..-.|.|||++ .||.+
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql-~Wl~q  462 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL-KWLAQ  462 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH-HHHHH
Confidence              4699999999999999999999999999999999999999999999999 8444999999999999999996 79999


Q ss_pred             HHHhccCCcCccCcceeccCCccceeeee
Q psy5670         946 YLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       946 w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      |+....-+  ..-...|++|+...+....
T Consensus       463 Wl~~~~lq--~sv~a~CayPe~Lad~~i~  489 (873)
T KOG4194|consen  463 WLYRRKLQ--SSVIAKCAYPEPLADQSIV  489 (873)
T ss_pred             HHHhcccc--cceeeeccCCcccccceeE
Confidence            99775322  3345699999988664433

>KOG4194|consensus

Probab=100.00  E-value=6.6e-42  Score=378.24  Aligned_cols=423  Identities=26%  Similarity=0.390  Sum_probs=346.5

Q ss_pred             CchhhhHHHHHHHhhhhhhhccc--cCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccc
Q psy5670           6 GSVFITVLISALGLVSASISKAL--RYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQA   83 (1269)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~   83 (1269)
                      -+.+.+.+++.+-+++.....++  ...||..|.|.++                   .+.|....+... +.....-+-|
T Consensus        18 s~s~~~l~~g~~~~~g~vvd~ga~~~~~cpa~c~c~~~-------------------lldcs~~~lea~-~~~~l~g~lp   77 (873)
T KOG4194|consen   18 SRSFDTLLIGLCHCVGNVVDAGAGDLSECPATCPCNTR-------------------LLDCSDRELEAI-DKSRLKGFLP   77 (873)
T ss_pred             ccchhhHHHHHHHhcCcccccCCCccccCCCcCCCCce-------------------eeecCccccccc-cccccCCcCc
Confidence            34556666666655443322333  3589999999875                   566776666553 2233334558


Q ss_pred             cceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCC-ccCceeecccccCCCCccceeccchhh
Q psy5670          84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGL-RKLKTLTLRTHNTDWSTMSLDISHNVF  162 (1269)
Q Consensus        84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l-~~L~~L~L~~~~~~~~~~~~~i~~~~f  162 (1269)
                      ..++.|++++|.    .+.+....|.++++|+.+++.+|.++.||.  |++. .+|+.|+|.+|.+      -.+..+.+
T Consensus        78 ~~t~~LdlsnNk----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I------~sv~se~L  145 (873)
T KOG4194|consen   78 SQTQTLDLSNNK----LSHIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLI------SSVTSEEL  145 (873)
T ss_pred             cceeeeeccccc----cccCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeecccc------ccccHHHH
Confidence            889999999999    678889899999999999999999999986  5544 5599999986644      35566677


Q ss_pred             hhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCC
Q psy5670         163 TDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS  242 (1269)
Q Consensus       163 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  242 (1269)
                       ..++.||.||||.|.|++++...|..-.++++|+|++|.|+++....|.+      +.+|..|.|+.|+++.+|...|.
T Consensus       146 -~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~------lnsL~tlkLsrNrittLp~r~Fk  218 (873)
T KOG4194|consen  146 -SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS------LNSLLTLKLSRNRITTLPQRSFK  218 (873)
T ss_pred             -HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc------cchheeeecccCcccccCHHHhh
Confidence             88999999999999999999988988899999999999999999888876      46899999999999999999999


Q ss_pred             CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670         243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  322 (1269)
                      ++++|+.|+|..|.|.....-.|.++++|+.|.|..|++..+..++|..+.++++|+|..|+++.+..+++.++++|+.|
T Consensus       219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL  298 (873)
T ss_pred             hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence            99999999999999988877789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCc
Q psy5670         323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK  402 (1269)
Q Consensus       323 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~  402 (1269)
                      +++.|.|..  +......-+++|++|+|++|.++.+++..|..+..|++|.|++|.+..+..++|..+.+|++|+|+.|.
T Consensus       299 ~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  299 DLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             ccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            999999987  667888888999999999999999999999999999999999999999988899999999999999998


Q ss_pred             ccccC---cccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhcCCCCCcEEECC
Q psy5670         403 LKRIE---SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLG  470 (1269)
Q Consensus       403 l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls  470 (1269)
                      ++...   ...|.++++|+.|++.+|++..+...+|.++.+|++|+|.+|.+..+ |.+|..+ .|++|-+.
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            87653   33466667777777777777777666666666666666666666554 3445554 55555544

>KOG4237|consensus

Probab=100.00  E-value=1.2e-38  Score=338.91  Aligned_cols=444  Identities=28%  Similarity=0.434  Sum_probs=299.9

Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC-
Q psy5670         274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY-  352 (1269)
Q Consensus       274 L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-  352 (1269)
                      .+.++-.++++|.++   .+.-.+|+|..|.|+.+++++|+.+++|+.|||++|.|+.  +.+.+|.++.+|..|.+.+ 
T Consensus        51 VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--IAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhh--cChHhhhhhHhhhHHHhhcC
Confidence            445555677777654   5667788888888888888888888888888888888877  7788888888888877766 


Q ss_pred             CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccCh
Q psy5670         353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE  432 (1269)
Q Consensus       353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  432 (1269)
                      |+|+.++...|.++.+|+.|.+.-|++..+...+|..+++|..|.+.+|.+..+...+|..+.+++.+.+..|.+...  
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd--  203 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD--  203 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc--
Confidence            888888888888888888888888888888888888888888888888888877777788888888887777653211  


Q ss_pred             hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc-ccCC-eeeccCCcCCCCChhhhcCCC
Q psy5670         433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL-HQLA-GLRLTENNISNISKGVFEKLS  510 (1269)
Q Consensus       433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~-~L~Ls~n~l~~i~~~~f~~l~  510 (1269)
                         .+++.+.....      ..|..+++........+.+.++..+....|... .++. .+....+.....|...|..++
T Consensus       204 ---CnL~wla~~~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  204 ---CNLPWLADDLA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP  274 (498)
T ss_pred             ---cccchhhhHHh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence               11121111100      112222333333334444455555554444322 1221 222233344667777899999


Q ss_pred             CCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCC
Q psy5670         511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGN  589 (1269)
Q Consensus       511 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n  589 (1269)
                      +|++|+|++|+|+++..++|.+...+++|.|..|++..+. +.|.++..                               
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~-------------------------------  323 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG-------------------------------  323 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc-------------------------------
Confidence            9999999999999999989888888887777777766543 22222222                               


Q ss_pred             CcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccc
Q psy5670         590 QISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA  669 (1269)
Q Consensus       590 ~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~  669 (1269)
                                                            |+.|+|.+|+|+.+.|.+|..+                    
T Consensus       324 --------------------------------------L~tL~L~~N~it~~~~~aF~~~--------------------  345 (498)
T KOG4237|consen  324 --------------------------------------LKTLSLYDNQITTVAPGAFQTL--------------------  345 (498)
T ss_pred             --------------------------------------ceeeeecCCeeEEEeccccccc--------------------
Confidence                                                  2222223333333334444333                    


Q ss_pred             cccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccccccc
Q psy5670         670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYET  749 (1269)
Q Consensus       670 ~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~  749 (1269)
                               .+|.++.+-.|||.|+|.+.||..|-..    .-   ..+...|+.+.  ....+++.++...+|.|..+.
T Consensus       346 ---------~~l~~l~l~~Np~~CnC~l~wl~~Wlr~----~~---~~~~~~Cq~p~--~~~~~~~~dv~~~~~~c~~~e  407 (498)
T KOG4237|consen  346 ---------FSLSTLNLLSNPFNCNCRLAWLGEWLRK----KS---VVGNPRCQSPG--FVRQIPISDVAFGDFRCGGPE  407 (498)
T ss_pred             ---------ceeeeeehccCcccCccchHHHHHHHhh----CC---CCCCCCCCCCc--hhccccchhccccccccCCcc
Confidence                     3455667778999999999999987541    11   33556787554  356788999999999988432


Q ss_pred             CcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCc
Q psy5670         750 NCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKL  829 (1269)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L  829 (1269)
                      +          ..|.-...||..|+|.      ..+|.||+.+++.+ |+++|.+++++|+++|.++.++...   +.+|
T Consensus       408 e----------~~~~~s~~cP~~c~c~------~tVvRcSnk~lk~l-p~~iP~d~telyl~gn~~~~vp~~~---~~~l  467 (498)
T KOG4237|consen  408 E----------LGCLTSSPCPPPCTCL------DTVVRCSNKLLKLL-PRGIPVDVTELYLDGNAITSVPDEL---LRSL  467 (498)
T ss_pred             c----------cCCCCCCCCCCCcchh------hhhHhhcccchhhc-CCCCCchhHHHhcccchhcccCHHH---Hhhh
Confidence            2          2345567899999995      57899999999988 9999999999999999999998652   3334


Q ss_pred             cEEEccCcCccccccccccCCCCCCEEeCCCC
Q psy5670         830 QILFLNSSHVETIHNKTFNGLKELIILRLDDN  861 (1269)
Q Consensus       830 ~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N  861 (1269)
                       .+++++|+|..+...+|.++++|.+|.|++|
T Consensus       468 -~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  468 -LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -hcccccCceehhhcccccchhhhheeEEecC
Confidence             4555555555555555555555555544443

>KOG0472|consensus

Probab=99.98  E-value=2.8e-36  Score=320.58  Aligned_cols=475  Identities=26%  Similarity=0.375  Sum_probs=273.8

Q ss_pred             CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670         191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS  270 (1269)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  270 (1269)
                      .-|+.|.+++|.+..+.+.       ...+..|.+|++++|++..+|+ +++.+..++.|+.++|.+..+++ .+..+.+
T Consensus        45 v~l~~lils~N~l~~l~~d-------l~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~  115 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRED-------LKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLIS  115 (565)
T ss_pred             cchhhhhhccCchhhccHh-------hhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhh
Confidence            3455555555554443221       2234455555555555555554 25555555555555555555532 3455555


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670         271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI  350 (1269)
Q Consensus       271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  350 (1269)
                      |+.|++++|.+..++++. +.+..|+.++..+|+++..+++ +.++.+|..+++.+|.+..  .++..+. ++.|++|+.
T Consensus       116 l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~--l~~~~i~-m~~L~~ld~  190 (565)
T KOG0472|consen  116 LVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKA--LPENHIA-MKRLKHLDC  190 (565)
T ss_pred             hhhhhccccceeecCchH-HHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhh--CCHHHHH-HHHHHhccc
Confidence            555555555555555443 3345555555555555555433 3445555555555555544  2222222 555555555


Q ss_pred             CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCcc
Q psy5670         351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI  430 (1269)
Q Consensus       351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  430 (1269)
                      ..|.+..++++ ++.+.+|..|++..|++..+|  .|.++..|++|+++.|++..++.....++++|..|||.+|++...
T Consensus       191 ~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~  267 (565)
T KOG0472|consen  191 NSNLLETLPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV  267 (565)
T ss_pred             chhhhhcCChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence            55555555443 455555555555555555554  255555555555555555555544445555555555555555554


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc-----cccCCe----eeccCCcC---
Q psy5670         431 EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS-----LHQLAG----LRLTENNI---  498 (1269)
Q Consensus       431 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~----L~Ls~n~l---  498 (1269)
                      +.+ +.-+.+|+.||+++|.++.+|..++++ .|+.|-+.+|.+..+...-+..     ++.|+.    =.++...-   
T Consensus       268 Pde-~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  268 PDE-ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             chH-HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            432 333455555555555555555555555 5555555555544332211110     001110    00000000   


Q ss_pred             --CCCChhhhc---CCCCCCEEEcCCCccccccccccCCC--CCccEEEcccccccccCCcCCCCCCC-cEEEccCCcCc
Q psy5670         499 --SNISKGVFE---KLSVLTILNLASNKIQKVEAGTFDNN--SNLVAIRLDGNYLTDIGGLFPKLPNL-VWLNISENLLE  570 (1269)
Q Consensus       499 --~~i~~~~f~---~l~~L~~L~Ls~n~i~~~~~~~~~~~--~~L~~L~L~~n~l~~l~~~~~~l~~L-~~L~Ls~n~l~  570 (1269)
                        .+.+...|.   ...+.+.|++++-+++.++.+.|..-  .-...++++.|++.++|..+..+..+ ..+.+++|.++
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is  425 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS  425 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence              000111111   23467788888888888877766542  23677888888888888766655444 34566677666


Q ss_pred             cccccc-cCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCC-cccCCccEEEccCcccccccCCccCC
Q psy5670         571 WFDYAL-IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN-AIPHSVENLFLTNNLISKVQPYTFFM  648 (1269)
Q Consensus       571 ~~~~~~-lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~-~~~~~L~~L~Ls~N~i~~~~~~~f~~  648 (1269)
                      +.+... .-+.|..|++++|-+.++|.  .++.+..|++||+|.|++..++.. ..+..++.+-.++|++..+.+..+.+
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~--e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLNDLPE--EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             cchHHHHhhhcceeeecccchhhhcch--hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            544321 22478889999999988886  344566799999999988766542 22346777777889999999988999


Q ss_pred             CCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccc
Q psy5670         649 KPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQ  692 (1269)
Q Consensus       649 ~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~  692 (1269)
                      +.+|+.|||.+|.|..+|+.      +..+.+++.+.+.||||.
T Consensus       504 m~nL~tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCCchhhCChh------hccccceeEEEecCCccC
Confidence            99999999999999999884      357788999999999974

>KOG4237|consensus

Probab=99.97  E-value=5.4e-33  Score=295.93  Aligned_cols=318  Identities=29%  Similarity=0.493  Sum_probs=206.3

Q ss_pred             CCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc-ccccccC-CcCCCCCCCcEEEcc
Q psy5670         488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLTDIG-GLFPKLPNLVWLNIS  565 (1269)
Q Consensus       488 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~-n~l~~l~-~~~~~l~~L~~L~Ls  565 (1269)
                      -.+++|..|+|+.||+++|+.+++|+.|||++|+|+.|.+.+|.++.+|.+|.+.+ |+|+++| +.|.++.+|+     
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq-----  143 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ-----  143 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH-----
Confidence            45666666666667777777777777777777777777777776666665555444 5555554 3343333332     


Q ss_pred             CCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCc
Q psy5670         566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYT  645 (1269)
Q Consensus       566 ~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~  645 (1269)
                                                                                      .|.+.-|++..+....
T Consensus       144 ----------------------------------------------------------------rLllNan~i~Cir~~a  159 (498)
T KOG4237|consen  144 ----------------------------------------------------------------RLLLNANHINCIRQDA  159 (498)
T ss_pred             ----------------------------------------------------------------HHhcChhhhcchhHHH
Confidence                                                                            2333334444444556


Q ss_pred             cCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccc
Q psy5670         646 FFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLL  725 (1269)
Q Consensus       646 f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~  725 (1269)
                      |..+++|..|.+..|.++.+...+|+     ....++.+.+..|||.|||++.|+.++...      .....+...|..+
T Consensus       160 l~dL~~l~lLslyDn~~q~i~~~tf~-----~l~~i~tlhlA~np~icdCnL~wla~~~a~------~~ietsgarc~~p  228 (498)
T KOG4237|consen  160 LRDLPSLSLLSLYDNKIQSICKGTFQ-----GLAAIKTLHLAQNPFICDCNLPWLADDLAM------NPIETSGARCVSP  228 (498)
T ss_pred             HHHhhhcchhcccchhhhhhcccccc-----chhccchHhhhcCccccccccchhhhHHhh------chhhcccceecch
Confidence            66677777777777777777666553     455677788999999999999999875430      0111223334332


Q ss_pred             cccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCC
Q psy5670         726 YNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDA  805 (1269)
Q Consensus       726 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~  805 (1269)
                      +.  .....+..++...|.|..+.                                              + |..     
T Consensus       229 ~r--l~~~Ri~q~~a~kf~c~~es----------------------------------------------l-~s~-----  254 (498)
T KOG4237|consen  229 YR--LYYKRINQEDARKFLCSLES----------------------------------------------L-PSR-----  254 (498)
T ss_pred             HH--HHHHHhcccchhhhhhhHHh----------------------------------------------H-HHh-----
Confidence            21  11122222333333332110                                              0 000     


Q ss_pred             cEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccc
Q psy5670         806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN  885 (1269)
Q Consensus       806 ~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N  885 (1269)
                                                +....+....-+..+|.+|++|++|+|++|+|+.|...+|.++..+++|+|..|
T Consensus       255 --------------------------~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  255 --------------------------LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             --------------------------hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                                      000111111223345777888888888888888888888888888888888888


Q ss_pred             cCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceec
Q psy5670         886 KIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCM  963 (1269)
Q Consensus       886 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~  963 (1269)
                      +|..+...+|.++..|++|+|.+|+|+.+.+. | ...+|.+|.|-+|||.|+|.+ .|+..|++.+. .   .++.+|.
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l-~wl~~Wlr~~~-~---~~~~~Cq  383 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL-AWLGEWLRKKS-V---VGNPRCQ  383 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch-HHHHHHHhhCC-C---CCCCCCC
Confidence            88888888888888888888888888888887 6 677889999999999999997 79999999875 2   3568999


Q ss_pred             cCCccce
Q psy5670         964 TGSEVGF  970 (1269)
Q Consensus       964 ~p~~~~~  970 (1269)
                      .|..+++
T Consensus       384 ~p~~~~~  390 (498)
T KOG4237|consen  384 SPGFVRQ  390 (498)
T ss_pred             CCchhcc
Confidence            9988754

>KOG0472|consensus

Probab=99.97  E-value=7.5e-35  Score=309.75  Aligned_cols=454  Identities=25%  Similarity=0.371  Sum_probs=232.2

Q ss_pred             cceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhh
Q psy5670          84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT  163 (1269)
Q Consensus        84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~  163 (1269)
                      ..+++|++.+|.    ...+|+ +++.+..++.|+.+.|++..+|+ .++.+.+|+.|+++++..      .++ ++.+ 
T Consensus        68 ~~l~vl~~~~n~----l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~------~el-~~~i-  133 (565)
T KOG0472|consen   68 ACLTVLNVHDNK----LSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNEL------KEL-PDSI-  133 (565)
T ss_pred             cceeEEEeccch----hhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccce------eec-CchH-
Confidence            334555555555    344444 45555555555555555555544 344555555555543321      111 2334 


Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      +.+..|+.|+..+|++.++|+++ ..+.+|..|++.+|+++..++....       +..|++||...|.++.+|++ ++.
T Consensus       134 ~~~~~l~dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-------m~~L~~ld~~~N~L~tlP~~-lg~  204 (565)
T KOG0472|consen  134 GRLLDLEDLDATNNQISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-------MKRLKHLDCNSNLLETLPPE-LGG  204 (565)
T ss_pred             HHHhhhhhhhccccccccCchHH-HHHHHHHHhhccccchhhCCHHHHH-------HHHHHhcccchhhhhcCChh-hcc
Confidence            45555555555555555555542 4455555555555555555443332       24555555555555555543 555


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +.+|.-|++..|.+...+  .|.++..|++|.++.|+|..+|......+++|..|+|..|+++..+.+ +.-+.+|+.||
T Consensus       205 l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLD  281 (565)
T KOG0472|consen  205 LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLD  281 (565)
T ss_pred             hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhc
Confidence            555555555555555554  355555555555555555555555555555555555555555554432 23445555555


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCC-----CCCcE----EEccCCc---cc--ccccccc--
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQV----LHLENNQ---IE--SIHRNTF--  387 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~----L~Ls~n~---l~--~i~~~~f--  387 (1269)
                      +++|.++.  + +..++++ +|+.|-+.+|.+..+..+.+..-     +.|+.    =.++...   -+  ..+.+.|  
T Consensus       282 lSNN~is~--L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~  357 (565)
T KOG0472|consen  282 LSNNDISS--L-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD  357 (565)
T ss_pred             ccCCcccc--C-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence            55555554  1 4445555 55555555554443322221110     00100    0000000   00  0001111  


Q ss_pred             -cCCCCCcEEEccCCcccccCcccccCCC--CCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchhhhcCCCC
Q psy5670         388 -ASLSNLHTLIMSNNKLKRIESNSLDSLT--ALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPKVLRNLHS  463 (1269)
Q Consensus       388 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~l~~l~~  463 (1269)
                       ....+.+.|++++-+++.++...|..-.  -....+++.|++.+++.. +..+.. ++.+.+++|.+.-+|..+..+++
T Consensus       358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lkelvT~l~lsnn~isfv~~~l~~l~k  436 (565)
T KOG0472|consen  358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELKELVTDLVLSNNKISFVPLELSQLQK  436 (565)
T ss_pred             hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence             1223344555555555555444443221  244555555555544332 111111 22344455555555555666666


Q ss_pred             CcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc
Q psy5670         464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG  543 (1269)
Q Consensus       464 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~  543 (1269)
                      |..|++++|.+.+++. .++.+..|+.|+++.|++..+|.. ...+..|+.+-.++|++..+++..+.++.+|..|||.+
T Consensus       437 Lt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhhhcch-hhhhhhhhheecccccccccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            7777777666665543 345556677777777766666643 23344455555666777777766677777777777777


Q ss_pred             ccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         544 NYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       544 n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      |.+..+|+.++++++|++|++++|.++
T Consensus       515 Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CchhhCChhhccccceeEEEecCCccC
Confidence            777777777777777777777777665

>KOG0618|consensus

Probab=99.96  E-value=6.3e-32  Score=315.96  Aligned_cols=461  Identities=28%  Similarity=0.305  Sum_probs=232.3

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      .-+|+.||+++|.+...|..+ ..+.+|+.|+++.|.+...+..       ...+.+|++|.|..|.+..+|. .+..++
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s-------~~~~~~l~~lnL~~n~l~~lP~-~~~~lk  114 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSS-------CSNMRNLQYLNLKNNRLQSLPA-SISELK  114 (1081)
T ss_pred             eeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchh-------hhhhhcchhheeccchhhcCch-hHHhhh
Confidence            334666666666665555543 5555566666666655555411       1224555666666555555543 355556


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCC-CCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVN-NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL  324 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  324 (1269)
                      +|+.|+++.|.+..++ ..+..++.++.++.++| ++..++.     .. ++.+++..|.+.+........++.  .|+|
T Consensus       115 nl~~LdlS~N~f~~~P-l~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL  185 (1081)
T KOG0618|consen  115 NLQYLDLSFNHFGPIP-LVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL  185 (1081)
T ss_pred             cccccccchhccCCCc-hhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence            6666666665555543 23445555555555555 1212211     11 444555544444433333333333  3555


Q ss_pred             cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670         325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      .+|.+.     ...+..+.+|+.|....|++..+..    .-++|+.|+.+.|.++.+...  ..-.+|++++++.|+++
T Consensus       186 r~N~~~-----~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  186 RYNEME-----VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             ccchhh-----hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence            555543     1223444555555555555444322    124555555555555433221  12234555555555555


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc
Q psy5670         405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS  484 (1269)
Q Consensus       405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  484 (1269)
                      .+. .++..+.+|+.+...+|.+..++. .+...++|+.|.+..|.+..+|.....++.|++|+|..|++...++..+.-
T Consensus       255 ~lp-~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v  332 (1081)
T KOG0618|consen  255 NLP-EWIGACANLEALNANHNRLVALPL-RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV  332 (1081)
T ss_pred             cch-HHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence            554 455555555555555555543332 233445555555555555555555555555555555555555555544433


Q ss_pred             ccc-CCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-CcCCCCCCCcEE
Q psy5670         485 LHQ-LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWL  562 (1269)
Q Consensus       485 l~~-L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L  562 (1269)
                      ... |..|..+.|.+...+...=...+.|+.|.+.+|.++.-....+.+...|+.|+|++|++.++| ..+.++..|+.|
T Consensus       333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL  412 (1081)
T KOG0618|consen  333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL  412 (1081)
T ss_pred             hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence            332 455555555554444322223344555555555555544444555555555555555555555 334555555555


Q ss_pred             EccCCcCcccccccc-CCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc-CCccc-CCccEEEccCcccc
Q psy5670         563 NISENLLEWFDYALI-PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT-GNAIP-HSVENLFLTNNLIS  639 (1269)
Q Consensus       563 ~Ls~n~l~~~~~~~l-p~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~-~~~~~-~~L~~L~Ls~N~i~  639 (1269)
                      ++|+|+++.++.... -..|++|...+|++..+|.   +..++.|+.+|+|.|+++.+. +...| ++|++|||++|.-.
T Consensus       413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  413 NLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hcccchhhhhhHHHHhhhhhHHHhhcCCceeechh---hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            555555554432111 1245555556666655553   334556777777777776543 34455 57777777777543


Q ss_pred             cccCCccCCCCCccEEEcCCC
Q psy5670         640 KVQPYTFFMKPNLTRVDLVGN  660 (1269)
Q Consensus       640 ~~~~~~f~~~~~L~~LdLs~N  660 (1269)
                      ...-..|..+.++...++.-|
T Consensus       490 ~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  490 VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhHHhhhhhheecccC
Confidence            333344555555555555544

>KOG0618|consensus

Probab=99.96  E-value=1.2e-31  Score=313.75  Aligned_cols=467  Identities=27%  Similarity=0.337  Sum_probs=369.4

Q ss_pred             CCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCC
Q psy5670         169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ  248 (1269)
Q Consensus       169 L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  248 (1269)
                      +..|+++.|.+...|-....+.-+|+.|++++|++...+..       +..+.+|+.|+++.|.+..++ .+..++.+|+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-------it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~   94 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-------ITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQ   94 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-------hhhHHHHhhcccchhhHhhCc-hhhhhhhcch
Confidence            66777777777666654445566699999999998876532       223578999999999999988 4588899999


Q ss_pred             EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670         249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE  328 (1269)
Q Consensus       249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  328 (1269)
                      +|.|.+|.+... |..+..+.+|+.|++++|.+..+|.-+ ..+..+..+..++|.....    ++... ++.+++..|.
T Consensus        95 ~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~  167 (1081)
T KOG0618|consen   95 YLNLKNNRLQSL-PASISELKNLQYLDLSFNHFGPIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNV  167 (1081)
T ss_pred             hheeccchhhcC-chhHHhhhcccccccchhccCCCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhh
Confidence            999999888766 457889999999999999999888654 5577888888888822221    22222 7778888877


Q ss_pred             CCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCc
Q psy5670         329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES  408 (1269)
Q Consensus       329 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~  408 (1269)
                      +.+..  ......+..  .|+|.+|.+...   .+..+.+|+.|....|++..+..    .-++|+.|+.+.|.++....
T Consensus       168 l~~~~--~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~  236 (1081)
T KOG0618|consen  168 LGGSF--LIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV  236 (1081)
T ss_pred             cccch--hcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc
Confidence            76532  333444444  599999988732   35678899999999999887753    34789999999999885433


Q ss_pred             ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccC
Q psy5670         409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL  488 (1269)
Q Consensus       409 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  488 (1269)
                      .  ....+|++++++.|+++.++ .++..+.+|+.++..+|.++.+|..+...++|+.|.+..|.+..+++ ....++.|
T Consensus       237 ~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL  312 (1081)
T KOG0618|consen  237 H--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSL  312 (1081)
T ss_pred             c--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-ccccccee
Confidence            2  23358999999999999988 89999999999999999999999999999999999999999998876 35678999


Q ss_pred             CeeeccCCcCCCCChhhhcCCCC-CCEEEcCCCccccccccccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccC
Q psy5670         489 AGLRLTENNISNISKGVFEKLSV-LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISE  566 (1269)
Q Consensus       489 ~~L~Ls~n~l~~i~~~~f~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~  566 (1269)
                      ++|+|..|.+..+|...|.-... |..|+.+.|++...+...=.....|+.|.+.+|.+++- -+.+.+..+|+.|+|++
T Consensus       313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence            99999999999999877776665 88899999998877643334567899999999999963 25677889999999999


Q ss_pred             CcCccccccccC--CCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCC
Q psy5670         567 NLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPY  644 (1269)
Q Consensus       567 n~l~~~~~~~lp--~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~  644 (1269)
                      |++..|+...+-  +.|+.|+||||+++.++.  .+..+..|++|..-+|+|..++.....+.|+.+|++.|+++.+.-.
T Consensus       393 NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~--tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  393 NRLNSFPASKLRKLEELEELNLSGNKLTTLPD--TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             cccccCCHHHHhchHHhHHHhcccchhhhhhH--HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhh
Confidence            999988775544  478999999999999885  5567889999999999999888666667999999999999865432


Q ss_pred             ccCCCCCccEEEcCCCCcccccc
Q psy5670         645 TFFMKPNLTRVDLVGNRLKNINQ  667 (1269)
Q Consensus       645 ~f~~~~~L~~LdLs~N~l~~l~~  667 (1269)
                      .-..-++|++||++||.=..++.
T Consensus       471 ~~~p~p~LkyLdlSGN~~l~~d~  493 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTRLVFDH  493 (1081)
T ss_pred             hhCCCcccceeeccCCcccccch
Confidence            22223899999999997443433

>KOG0444|consensus

Probab=99.94  E-value=1.2e-28  Score=274.23  Aligned_cols=337  Identities=28%  Similarity=0.406  Sum_probs=208.1

Q ss_pred             CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCC--CCCcccccCCCCCcE
Q psy5670         220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV--NIPPELFNQSRDLKE  297 (1269)
Q Consensus       220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~f~~l~~L~~  297 (1269)
                      +++++.|.|...++..+|. .++.+.+|++|.+++|++..+. +.+..++.|+.+.+..|++.  ++|+++|. +..|+.
T Consensus        31 Mt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~  107 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTI  107 (1255)
T ss_pred             hhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcc-ccccee
Confidence            3455555555555555543 3555666666666666655543 34555666666666666543  45555543 556666


Q ss_pred             EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCC
Q psy5670         298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN  377 (1269)
Q Consensus       298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  377 (1269)
                      |+|++|++...+. .+..-.++-+|+|++|+|..  ++...|.+++.|-.||||+|++..++|. ...+..|+.|+|++|
T Consensus       108 lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  108 LDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eecchhhhhhcch-hhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCC
Confidence            6666666655532 23455556666666666554  4455555666666666666666666554 455666666666666


Q ss_pred             cccccccccccCCCCCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh
Q psy5670         378 QIESIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK  456 (1269)
Q Consensus       378 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~  456 (1269)
                      .+....-..+..+++|+.|.+++.+-+ .-.|.++..+.+|..++++.|++..+ |+.+.++.+|+.|+|++|+++++..
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec
Confidence            655443333445566666666665432 22344556666777777777666543 4456667777777777777776665


Q ss_pred             hhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC--CCCChhhhcCCCCCCEEEcCCCccccccccccCCCC
Q psy5670         457 VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS  534 (1269)
Q Consensus       457 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~  534 (1269)
                      ......+|++|++|.|+++..+ .++..++.|+.|.+.+|++  ..||.+ .+.+.+|+++..++|.+.- .|+.+..|.
T Consensus       263 ~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LEl-VPEglcRC~  339 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLEL-VPEGLCRCV  339 (1255)
T ss_pred             cHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhcccccc-CchhhhhhH
Confidence            5555667777777777776554 3566677777777777776  566654 4677777777777776643 355677777


Q ss_pred             CccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670         535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       535 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  567 (1269)
                      .|+.|.|+.|++..+|..+.-++.|+.||+..|
T Consensus       340 kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLITLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHHhcccccceeechhhhhhcCCcceeeccCC
Confidence            777777777777777777777777777777777

>KOG0444|consensus

Probab=99.93  E-value=3.8e-28  Score=270.31  Aligned_cols=369  Identities=26%  Similarity=0.347  Sum_probs=219.4

Q ss_pred             ccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhh
Q psy5670          83 AQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVF  162 (1269)
Q Consensus        83 ~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f  162 (1269)
                      .+.++-.++++|+   |.+.--|+....++.++.|.|...++..+|. .++.|.+|+.|.+++|+.       ....+.+
T Consensus         6 LpFVrGvDfsgND---Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L-------~~vhGEL   74 (1255)
T KOG0444|consen    6 LPFVRGVDFSGND---FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQL-------ISVHGEL   74 (1255)
T ss_pred             cceeecccccCCc---CCCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhh-------Hhhhhhh
Confidence            3556777777777   2323333466777777777777777777755 567777777777755432       1112233


Q ss_pred             hhcCCCCCEEEccCCCCc--cCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCccc
Q psy5670         163 TDELQSLESLDLSMNSIW--TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG  240 (1269)
Q Consensus       163 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  240 (1269)
                       +.++.|+.+++..|++.  +||+.+ ..+..|+.||||.|+++..+.. +      ..-.++-.|+||+|+|..||...
T Consensus        75 -s~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~-L------E~AKn~iVLNLS~N~IetIPn~l  145 (1255)
T KOG0444|consen   75 -SDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTN-L------EYAKNSIVLNLSYNNIETIPNSL  145 (1255)
T ss_pred             -ccchhhHHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchh-h------hhhcCcEEEEcccCccccCCchH
Confidence             56667777777777665  566665 3566777777777777665432 1      11245666777777777777666


Q ss_pred             CCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc-ccCcccccCCCCC
Q psy5670         241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN-VLAPGIFNVLTQL  319 (1269)
Q Consensus       241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  319 (1269)
                      |-++..|-.|+|++|.+..++| .+..+..|++|+|++|.+....-.-+..+++|+.|.+++.+-+ .-.|..+..+.+|
T Consensus       146 finLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL  224 (1255)
T KOG0444|consen  146 FINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL  224 (1255)
T ss_pred             HHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence            6666667777777777666655 3556666777777766543221111223556666666655322 1223345566666


Q ss_pred             CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q psy5670         320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS  399 (1269)
Q Consensus       320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  399 (1269)
                      ..+|++.|.+..   .+..+.++++|+.|+||+|+++.+... .....+|+.|+++.|+++.++. ++..++.|+.|.+.
T Consensus       225 ~dvDlS~N~Lp~---vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  225 RDVDLSENNLPI---VPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYAN  299 (1255)
T ss_pred             hhccccccCCCc---chHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhc
Confidence            666666666653   255566666666666666666655432 2334466666666666666653 34566666666666


Q ss_pred             CCccccc-CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC
Q psy5670         400 NNKLKRI-ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN  478 (1269)
Q Consensus       400 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~  478 (1269)
                      +|+++-. .|..++.+.+|+.+..++|.+. +.|..+..|..|+.|.|+.|.+..+|+++.-++.|+.||+..|.-...+
T Consensus       300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCC
Confidence            6665432 2445566666666666665554 3344566666666666666666666666666666666666666544333

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.93  E-value=9.1e-26  Score=225.17  Aligned_cols=130  Identities=41%  Similarity=0.764  Sum_probs=120.0

Q ss_pred             EEEEccc-CCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHH
Q psy5670        1087 AFVSYSS-KDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAH 1165 (1269)
Q Consensus      1087 afvsy~~-~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~ 1165 (1269)
                      |||||++ +|++||.++|.|.||+.++||++|+++||+.||..+.++|.++|++||++|+|+|++|++|+||.+|++.|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999 899999999999999866899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC-CeEEEEEeCCCCCCCCC--HHHHHHHhcCceEEcCCc-------chHHHHHHh
Q psy5670        1166 HQVLRGK-KRLIVILLGEVPQKDLD--PDIRLYLKSNTYLQWGDK-------LFWEKLKFA 1216 (1269)
Q Consensus      1166 ~~~~~~~-~~~i~i~~~~~~~~~~~--~~l~~~l~~~~~l~w~~~-------~Fw~~l~~~ 1216 (1269)
                      +.+.+++ .++|+|+++++++.+++  ..++..++..+|++|+++       +||++||||
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            9999977 89999999999988886  578899999999999775       599999986

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6e-21  Score=233.83  Aligned_cols=154  Identities=25%  Similarity=0.369  Sum_probs=83.3

Q ss_pred             CeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCc
Q psy5670         489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL  568 (1269)
Q Consensus       489 ~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~  568 (1269)
                      ..|++++|.++.+|....   ++|+.|++++|+++.++.    .+++|++|++++|+++.+|..   .++|+.|++++|.
T Consensus       204 ~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             cEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            345555555555544321   245555555555554432    135566666666666555532   2355566666665


Q ss_pred             CccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCC
Q psy5670         569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFM  648 (1269)
Q Consensus       569 l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~  648 (1269)
                      +..++.  +|.+|+.|++++|+++.++.     ..++|+.|++++|+|++++.  +|.+|+.|++++|+++++..    .
T Consensus       274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~LP~----l  340 (788)
T PRK15387        274 LTHLPA--LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPT----L  340 (788)
T ss_pred             hhhhhh--chhhcCEEECcCCccccccc-----cccccceeECCCCccccCCC--CcccccccccccCccccccc----c
Confidence            554432  44556666666666665543     12456666666666666543  45566666666666665432    1


Q ss_pred             CCCccEEEcCCCCcccc
Q psy5670         649 KPNLTRVDLVGNRLKNI  665 (1269)
Q Consensus       649 ~~~L~~LdLs~N~l~~l  665 (1269)
                      ..+|+.|+|++|+|+.+
T Consensus       341 p~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        341 PSGLQELSVSDNQLASL  357 (788)
T ss_pred             ccccceEecCCCccCCC
Confidence            13566666666666543

>PLN03210 Resistant to P

Probab=99.85  E-value=1.1e-19  Score=241.49  Aligned_cols=321  Identities=21%  Similarity=0.238  Sum_probs=196.1

Q ss_pred             CCChhhccCCccCceeecccccCCCC-ccceeccchhhhhcC-CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCC
Q psy5670         126 NLSAGSFRGLRKLKTLTLRTHNTDWS-TMSLDISHNVFTDEL-QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL  203 (1269)
Q Consensus       126 ~i~~~~f~~l~~L~~L~L~~~~~~~~-~~~~~i~~~~f~~~l-~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l  203 (1269)
                      .+...+|.++++|+.|.+..+..+.. ..... .|..| ..+ .+|+.|++.++.+..+|...  ...+|++|+|++|++
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~-~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGF-DYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKL  623 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceee-cCcch-hhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccc
Confidence            45667889999999998854332111 11122 24455 444 46999999999998888753  568999999999988


Q ss_pred             CCCCccccCCCCcccCCCcccEEEcCCCC-CCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCC-CC
Q psy5670         204 SNVATFSFSNYDTARCGINLRVLDLSNNS-FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN-NL  281 (1269)
Q Consensus       204 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l  281 (1269)
                      ..+...       ...+++|+.|+|+++. +..++  .++.+++|++|++++|......|..+.++++|+.|++++| .+
T Consensus       624 ~~L~~~-------~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        624 EKLWDG-------VHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             cccccc-------cccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            765421       2346889999998764 55555  3788899999999988755555677888999999999886 46


Q ss_pred             CCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCccc---
Q psy5670         282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL---  358 (1269)
Q Consensus       282 ~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---  358 (1269)
                      ..+|...  ++++|+.|++++|......|.   ..++|+.|++++|.+..  + +.. ..+++|+.|.+.++....+   
T Consensus       695 ~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~--l-P~~-~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        695 EILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE--F-PSN-LRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc--c-ccc-ccccccccccccccchhhcccc
Confidence            6777643  678888999888854433332   24578888888887754  2 222 2466777777765432211   


Q ss_pred             ----CchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhh
Q psy5670         359 ----DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENA  434 (1269)
Q Consensus       359 ----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  434 (1269)
                          .+..+...++|+.|++++|......+..+.++++|+.|++++|...+..|... ++++|+.|++++|......+. 
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-  843 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-  843 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-
Confidence                11112223456666666654322222345566666666666553222222222 455566666655533222111 


Q ss_pred             hcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCC
Q psy5670         435 LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN  472 (1269)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n  472 (1269)
                        ..++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus       844 --~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        844 --ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence              123555555555555555555555555555555553

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.84  E-value=5.7e-21  Score=191.48  Aligned_cols=133  Identities=36%  Similarity=0.608  Sum_probs=117.5

Q ss_pred             ceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHH
Q psy5670        1084 LFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKS 1163 (1269)
Q Consensus      1084 ~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~ 1163 (1269)
                      +|||||||+++  +|+.+++++.|++...++++|+..+|+.+|....++|.++|++||++|+|+|++|++|+||..|++.
T Consensus         1 ~~dvFISys~~--~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGK--EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCC--HHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            59999999997  6666778888887556778888888999999888899999999999999999999999999999999


Q ss_pred             HHHHHhcCC-CeEEEEEeCCCCC--CCCCHHHHHHHhcCceEEcCCcc---hHHHHHHhCCC
Q psy5670        1164 AHHQVLRGK-KRLIVILLGEVPQ--KDLDPDIRLYLKSNTYLQWGDKL---FWEKLKFALPD 1219 (1269)
Q Consensus      1164 a~~~~~~~~-~~~i~i~~~~~~~--~~~~~~l~~~l~~~~~l~w~~~~---Fw~~l~~~l~~ 1219 (1269)
                      |.+...+.+ .++|||+++++++  ..++..++.+++++ |++|++..   ||++++++||.
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~-~~~w~~~~~~~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKN-YLKWPEDEKERFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHH-HhhcCCchhHHHHHHHHHHhcc
Confidence            999988756 9999999999963  34567899999888 99998765   99999999995

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.9e-20  Score=229.37  Aligned_cols=262  Identities=24%  Similarity=0.304  Sum_probs=144.3

Q ss_pred             CccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q psy5670         344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLD  423 (1269)
Q Consensus       344 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  423 (1269)
                      .-..|+++.+.++.+++.. .  ++|+.|++++|+++.++.    ..++|++|++++|+++.+..    ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence            3456677777666655432 2  256666666666666553    13556666666665554421    12345555555


Q ss_pred             CCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh
Q psy5670         424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK  503 (1269)
Q Consensus       424 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~  503 (1269)
                      +|.+..++.    ..++|+.|++++|+++.+|..   .++|+.|++++|                        ++..++.
T Consensus       271 ~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N------------------------~L~~Lp~  319 (788)
T PRK15387        271 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN------------------------QLASLPA  319 (788)
T ss_pred             CCchhhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCC------------------------ccccCCC
Confidence            555443322    113444455555554444431   234444444444                        4444332


Q ss_pred             hhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccE
Q psy5670         504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQW  583 (1269)
Q Consensus       504 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~  583 (1269)
                          ...+|+.|++++|++++++.    ...+|+.|+|++|+++.+|...   .+|+.|++++|+|+.++.  +|.+|+.
T Consensus       320 ----lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~--l~~~L~~  386 (788)
T PRK15387        320 ----LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPA--LPSGLKE  386 (788)
T ss_pred             ----CcccccccccccCccccccc----cccccceEecCCCccCCCCCCC---cccceehhhccccccCcc--cccccce
Confidence                11234444555555544331    1234555555555555554322   345555555565554432  3445666


Q ss_pred             EECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcc
Q psy5670         584 LDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK  663 (1269)
Q Consensus       584 L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~  663 (1269)
                      |++++|+|+.++..     ..+|+.|++++|+|++++.  ++.+|+.|++++|+|+.+ |..+.++++|+.|+|++|+|+
T Consensus       387 LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        387 LIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             EEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCC
Confidence            66666666665542     2467778888888777653  456778888888888765 566778888888888888887


Q ss_pred             ccccc
Q psy5670         664 NINQT  668 (1269)
Q Consensus       664 ~l~~~  668 (1269)
                      +..+.
T Consensus       459 ~~~~~  463 (788)
T PRK15387        459 ERTLQ  463 (788)
T ss_pred             chHHH
Confidence            65443

>PLN03210 Resistant to P

Probab=99.81  E-value=2.4e-18  Score=228.78  Aligned_cols=345  Identities=24%  Similarity=0.306  Sum_probs=195.6

Q ss_pred             CCcccCCCCCCCcEEECCCCCCCC------CCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCC
Q psy5670         182 LPDAIFCPLQSLSYLNLTQNKLSN------VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN  255 (1269)
Q Consensus       182 l~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  255 (1269)
                      +...+|.++++|+.|.+..+....      ..+.+|..+     ..+|+.|++.++.++.+|.. | ...+|+.|++.++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l-----p~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s  621 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL-----PPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGS  621 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhc-----CcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCc
Confidence            445567777777777776553221      111122211     24678888888877777653 4 4577888888888


Q ss_pred             CCcccchhhhcCCCCCcEEEccCCC-CCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCcccc
Q psy5670         256 ILTFLADHALDGLNSLTVLNLSVNN-LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV  334 (1269)
Q Consensus       256 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  334 (1269)
                      .+..+. ..+..+++|+.|+|+++. +..+|.  +..+++|+.|+|++|......|..+.++++|+.|++++|..... +
T Consensus       622 ~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-L  697 (1153)
T PLN03210        622 KLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-L  697 (1153)
T ss_pred             cccccc-cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-c
Confidence            777654 346677888888887764 555653  56677888888887754444455677788888888887643321 2


Q ss_pred             CcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCC
Q psy5670         335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL  414 (1269)
Q Consensus       335 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l  414 (1269)
                       +..+ ++++|+.|++++|......+.   ...+|+.|++++|.+..++...  .+++|+.|.+.++....+..      
T Consensus       698 -p~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~------  764 (1153)
T PLN03210        698 -PTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWE------  764 (1153)
T ss_pred             -CCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc--cccccccccccccchhhccc------
Confidence             2222 567777777777643322221   2346777777777777665431  45666666665543211100      


Q ss_pred             CCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCC-CCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeec
Q psy5670         415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK-LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL  493 (1269)
Q Consensus       415 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  493 (1269)
                                 .+..+.+..+...++|+.|++++|. +..+|..++++++|+.|++++|...+..|... ++++|+.|++
T Consensus       765 -----------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L  832 (1153)
T PLN03210        765 -----------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL  832 (1153)
T ss_pred             -----------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence                       0001111112223455555555553 33455555555555555555543222222222 4555566666


Q ss_pred             cCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc-ccccccCCcCCCCCCCcEEEccCC
Q psy5670         494 TENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLTDIGGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       494 s~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~-n~l~~l~~~~~~l~~L~~L~Ls~n  567 (1269)
                      ++|.. ..++.    ..++|+.|+|++|.++.++ ..+..+++|+.|++++ +.+..+|..+..+++|+.+++++|
T Consensus       833 s~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        833 SGCSRLRTFPD----ISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCccccccc----cccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            55543 33321    1245666666666666543 3455666677777766 356666666666777777777777

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=3.7e-18  Score=211.27  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEecc
Q psy5670         828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD  907 (1269)
Q Consensus       828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~  907 (1269)
                      +|+.|++++|.++.++...   .++|+.|+|++|+|+.++.. +  .++|++|+|++|+|+.+|+...   ..|+.|+++
T Consensus       326 sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs  396 (754)
T PRK15370        326 GLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPENLP---AALQIMQAS  396 (754)
T ss_pred             cceeccccCCccccCChhh---cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH---HHHHHHhhc
Confidence            4455555555555543321   25677788888877776652 2  2578888888888888877643   368888888


Q ss_pred             Cccceeeeccc-----ccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670         908 HNRITSFAVWH-----LSSQIQSITLTSNPWSCDCDFTEKFRDYLQ  948 (1269)
Q Consensus       908 ~N~l~~~~~~~-----~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~  948 (1269)
                      +|+|+.+|..+     ..+.+..+++.+||+...  ....++.++.
T Consensus       397 ~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~--tl~~L~~Ll~  440 (754)
T PRK15370        397 RNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSER--TIQNMQRLMS  440 (754)
T ss_pred             cCCcccCchhHHHHhhcCCCccEEEeeCCCccHH--HHHHHHHhhh
Confidence            88888877652     347788999999999853  2344545543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=9.5e-18  Score=207.68  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=25.7

Q ss_pred             cccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670         605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN  666 (1269)
Q Consensus       605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~  666 (1269)
                      +|+.|++++|+|+.++. .++++|+.|+|++|+++.+++. +.  ..|+.|++++|+|+.++
T Consensus       347 sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        347 ELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLP  404 (754)
T ss_pred             cccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCc
Confidence            34444444444443322 2334455555555555443321 11  23555555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.61  E-value=1.5e-16  Score=184.24  Aligned_cols=278  Identities=24%  Similarity=0.267  Sum_probs=151.3

Q ss_pred             EEEccCCccccc-CcccccCCCCCCEEEccCCCCCcc----ChhhhcCCCCCcEEEccCCCCCC-------chhhhcCCC
Q psy5670         395 TLIMSNNKLKRI-ESNSLDSLTALSVLSLDNNELEYI----EENALKNSTSLQDFHLNGNKLTE-------IPKVLRNLH  462 (1269)
Q Consensus       395 ~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~-------lp~~l~~l~  462 (1269)
                      .|+|..+.+++. ....+..+..|+.|+++++.++..    .+..+...++|++++++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            356666666532 233445556677777777776432    22334556667777777766552       223455566


Q ss_pred             CCcEEECCCCCCCccChhhhhcccc---CCeeeccCCcCCCCCh----hhhcCC-CCCCEEEcCCCccccc----ccccc
Q psy5670         463 SLKTLDLGDNLITEINNLSLNSLHQ---LAGLRLTENNISNISK----GVFEKL-SVLTILNLASNKIQKV----EAGTF  530 (1269)
Q Consensus       463 ~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~i~~----~~f~~l-~~L~~L~Ls~n~i~~~----~~~~~  530 (1269)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|.++....    ..+..+ ++|+.|++++|.+++.    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777766544444444444   6667776666642111    123344 5666666666665521    11233


Q ss_pred             CCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccccccccc
Q psy5670         531 DNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR  605 (1269)
Q Consensus       531 ~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~  605 (1269)
                      ..+.+|+.|++++|.+++     ++..+..+++|+.|++++|.++......+                   ...+..+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------------~~~~~~~~~  222 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-------------------AETLASLKS  222 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-------------------HHHhcccCC
Confidence            444555666665555542     12222333445555555444432211100                   012334566


Q ss_pred             ccEEEcCCCccccccCC----cc---cCCccEEEccCcccccc----cCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670         606 LTYFDASSNKLTELTGN----AI---PHSVENLFLTNNLISKV----QPYTFFMKPNLTRVDLVGNRLKNINQTALRISP  674 (1269)
Q Consensus       606 L~~LdLs~N~l~~~~~~----~~---~~~L~~L~Ls~N~i~~~----~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~  674 (1269)
                      |+.|++++|.+++....    .+   ...|+.|++++|.+++.    ....+..+++|+.+|+++|.++.-+...+...-
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            77777777777643211    11   24788888888887622    122355568899999999999865433332111


Q ss_pred             CCCCCCCCceEecCCcc
Q psy5670         675 LPSHKNIPDFYIGENPF  691 (1269)
Q Consensus       675 ~~~~~~l~~l~l~~Np~  691 (1269)
                      ......+.++++++|||
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            11224677888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=1.5e-15  Score=175.80  Aligned_cols=133  Identities=26%  Similarity=0.375  Sum_probs=63.7

Q ss_pred             CCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCCCCCccCh----hhhhccccCCeeeccCCcCCCCCh----hh
Q psy5670         439 TSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRLTENNISNISK----GV  505 (1269)
Q Consensus       439 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~----~~  505 (1269)
                      ++|++|++++|.++     .++..+..+++|++|++++|.+++...    ..+..+++|+.|++++|.++....    ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            45555555555554     222334444555566665555553211    122333455555555555532221    22


Q ss_pred             hcCCCCCCEEEcCCCccccccccccC-----CCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCcc
Q psy5670         506 FEKLSVLTILNLASNKIQKVEAGTFD-----NNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEW  571 (1269)
Q Consensus       506 f~~l~~L~~L~Ls~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~  571 (1269)
                      +..+++|++|++++|++++.....+.     ..+.|+.|++++|.+++     +...+..+++|+++++++|.++.
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            44556666666666665542221111     23556666666665541     22233344555555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03194 putative disease resistance protein; Provisional

Probab=99.47  E-value=1.7e-13  Score=135.81  Aligned_cols=94  Identities=22%  Similarity=0.298  Sum_probs=85.4

Q ss_pred             CCCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhH
Q psy5670        1081 RDKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCR 1158 (1269)
Q Consensus      1081 ~~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~ 1158 (1269)
                      -.+.|||||||..+|.  .||. .|...|++  .|+++|++++++.+|+.+.+.|.+||+.||..|+|+|++|..|.||.
T Consensus        23 ~~~~yDVFISFrG~DtR~~Fvs-hL~~aL~~--~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL   99 (187)
T PLN03194         23 SAKPCDVFINHRGIDTKRTIAT-LLYDHLSR--LNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL   99 (187)
T ss_pred             CCCCCcEEEeCCCccccccHHH-HHHHHHHH--CCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence            4688999999999996  6884 59999995  69999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEeC
Q psy5670        1159 YEFKSAHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus      1159 ~e~~~a~~~~~~~~~~~i~i~~~ 1181 (1269)
                      .|+..++..    +.+||||+++
T Consensus       100 dEL~~I~e~----~~~ViPIFY~  118 (187)
T PLN03194        100 HELALIMES----KKRVIPIFCD  118 (187)
T ss_pred             HHHHHHHHc----CCEEEEEEec
Confidence            999999752    4679999984

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.35  E-value=1.8e-13  Score=128.48  Aligned_cols=89  Identities=36%  Similarity=0.615  Sum_probs=76.2

Q ss_pred             EEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHHH
Q psy5670        1087 AFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHH 1166 (1269)
Q Consensus      1087 afvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~ 1166 (1269)
                      +||||+++|++||.+ |...|++  .||++|++. |+.+|+.+.+.|.++|++|+.+|+++|++|++|+||..|+..|..
T Consensus         1 VFIS~~~~D~~~a~~-l~~~L~~--~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~   76 (102)
T PF13676_consen    1 VFISYSSEDREFAER-LAERLES--AGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK   76 (102)
T ss_dssp             EEEEEEGGGCCCHHH-HHHHHHH--TT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred             eEEEecCCcHHHHHH-HHHHHhh--cCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence            699999999999966 9999996  599999986 999999999999999999999999999999999999999999932


Q ss_pred             HHhcCCCeEEEEEeCCC
Q psy5670        1167 QVLRGKKRLIVILLGEV 1183 (1269)
Q Consensus      1167 ~~~~~~~~~i~i~~~~~ 1183 (1269)
                          .++++|+|.+++.
T Consensus        77 ----~~~~iipv~~~~~   89 (102)
T PF13676_consen   77 ----RGKPIIPVRLDPC   89 (102)
T ss_dssp             ----TSESEEEEECSGG
T ss_pred             ----CCCEEEEEEECCc
Confidence                3367999998876

>KOG0617|consensus

Probab=99.29  E-value=8.2e-14  Score=133.03  Aligned_cols=156  Identities=28%  Similarity=0.430  Sum_probs=69.1

Q ss_pred             CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670         220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY  299 (1269)
Q Consensus       220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  299 (1269)
                      +++++.|.||+|+++.+++. +..+.+|+.|++.+|++.+.+. .++.+++|+.|+++-|++..+|.+ |+.++.|+.|+
T Consensus        32 ~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lprg-fgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCccc-cCCCchhhhhh
Confidence            34455555555555555543 4555555555555555555432 345555555555555544444332 34444444444


Q ss_pred             eeCCcccc-cCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCc
Q psy5670         300 LQNNSINV-LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQ  378 (1269)
Q Consensus       300 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  378 (1269)
                      |.+|.+.. ..|+-|-.++.|+.|+|++|.+.   +.+..++++++|+.|.+..|.+-.++.+ ++.+..|++|.+.+|.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNR  184 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccce
Confidence            44444332 22333333444444444444433   1233334444444444444444333222 3334444444444444


Q ss_pred             cccc
Q psy5670         379 IESI  382 (1269)
Q Consensus       379 l~~i  382 (1269)
                      ++-+
T Consensus       185 l~vl  188 (264)
T KOG0617|consen  185 LTVL  188 (264)
T ss_pred             eeec
Confidence            4333

>KOG0617|consensus

Probab=99.27  E-value=5.3e-14  Score=134.28  Aligned_cols=40  Identities=28%  Similarity=0.243  Sum_probs=17.6

Q ss_pred             CCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       531 ~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      +.+++|+.|.+..|.+-++|..+..++.|++|.+.+|+++
T Consensus       147 g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            3344444444444444444444444444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=7.3e-12  Score=127.09  Aligned_cols=122  Identities=27%  Similarity=0.374  Sum_probs=48.0

Q ss_pred             CCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccC
Q psy5670         812 GNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS  891 (1269)
Q Consensus       812 ~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~  891 (1269)
                      .+.|..++  .+.+..++++|+|++|.|+.|+.-. ..+.+|+.|+|++|.|+.+..  |..+++|++|+|++|+|+++.
T Consensus         6 ~~~i~~~~--~~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    6 ANMIEQIA--QYNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             --------------------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-C
T ss_pred             cccccccc--ccccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccc
Confidence            34444444  2455667899999999999986422 367899999999999999975  888999999999999999998


Q ss_pred             hhhhhcCcccceEeccCccceeeecc--c-ccCCccEEEeeCCcccccCC
Q psy5670         892 NRTFLSLTHLKVLQLDHNRITSFAVW--H-LSSQIQSITLTSNPWSCDCD  938 (1269)
Q Consensus       892 ~~~f~~l~~L~~L~L~~N~l~~~~~~--~-~~~~l~~l~l~~Np~~C~C~  938 (1269)
                      +.....+|+|+.|+|++|+|..+..-  + .+++|+.|+|.|||+.-..+
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence            76556789999999999999988775  3 78999999999999965544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.1e-11  Score=123.72  Aligned_cols=123  Identities=28%  Similarity=0.407  Sum_probs=56.1

Q ss_pred             CCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeec
Q psy5670         803 MDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL  882 (1269)
Q Consensus       803 ~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L  882 (1269)
                      ...++|+|++|.|+.|+.-. ..+.+|+.|++++|.|+.++  .|..++.|++|++++|+|+++.+.....+++|++|+|
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccchh-hhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            45689999999999998422 25789999999999999997  4888999999999999999997644457899999999


Q ss_pred             ccccCcccCh-hhhhcCcccceEeccCccceeeecc--c---ccCCccEEEe
Q psy5670         883 QYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW--H---LSSQIQSITL  928 (1269)
Q Consensus       883 ~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~--~---~~~~l~~l~l  928 (1269)
                      ++|+|..+.. ..+..+++|++|+|.+|.++.-+..  +   .+++|+.||-
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999998766 5677899999999999999876554  2   6788887754

>KOG3207|consensus

Probab=99.05  E-value=3.9e-11  Score=131.82  Aligned_cols=204  Identities=24%  Similarity=0.247  Sum_probs=123.3

Q ss_pred             CCCCCCEEEccCCCCCccCh-hhhcCCCCCcEEEccCCCCCCch---hhhcCCCCCcEEECCCCCCCccChhhh-hcccc
Q psy5670         413 SLTALSVLSLDNNELEYIEE-NALKNSTSLQDFHLNGNKLTEIP---KVLRNLHSLKTLDLGDNLITEINNLSL-NSLHQ  487 (1269)
Q Consensus       413 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~  487 (1269)
                      ++.+|+++.|.++.+..... .....|++++.|+|++|-+..+-   .....+|+|+.|+++.|.+........ ..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45566777777666554432 34566777788888877666442   334677888888888887654332211 24567


Q ss_pred             CCeeeccCCcCCCCC-hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC--CcCCCCCCCcEEEc
Q psy5670         488 LAGLRLTENNISNIS-KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI  564 (1269)
Q Consensus       488 L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L  564 (1269)
                      |+.|.|+.|.++.-. ......+|+|+.|+|.+|....+.......+..|++|+|++|.+-+.+  .....++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            788888888874211 123567788888888888644444445556778888888888887765  45566788888888


Q ss_pred             cCCcCccccccc--------cCCCccEEECCCCCcccccccccccccccccEEEcCCCcc
Q psy5670         565 SENLLEWFDYAL--------IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKL  616 (1269)
Q Consensus       565 s~n~l~~~~~~~--------lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l  616 (1269)
                      +.+.+.++....        .-++|+.|+++.|+|.+.+....+..+.+|+.|.+-.|.+
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            888777553211        1124555555555544433332333333444444434433

>KOG1909|consensus

Probab=99.04  E-value=6.5e-11  Score=126.93  Aligned_cols=190  Identities=24%  Similarity=0.299  Sum_probs=94.2

Q ss_pred             cccCCCCccEEEcCCCCCcccCc----hhhcCCCCCcEEEccCCcccccccccc-------------cCCCCCcEEEccC
Q psy5670         338 TFSGLHRLVVLNIAYNKMNKLDS----SIFKDLYRLQVLHLENNQIESIHRNTF-------------ASLSNLHTLIMSN  400 (1269)
Q Consensus       338 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f-------------~~l~~L~~L~Ls~  400 (1269)
                      ++.++++|+.|+||+|-+..-..    ..+.++..|++|.|.+|.+.......+             +.-+.|+.+...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            34455666666666665543222    234456677777777777654332221             2334556666665


Q ss_pred             CcccccCc----ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc
Q psy5670         401 NKLKRIES----NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       401 n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      |++...+.    ..|...+.|+.+.++.|.|..-..                   +.+...+..+++|+.|||.+|.++.
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------------------~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------------------TALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchh-------------------HHHHHHHHhCCcceeeecccchhhh
Confidence            55544321    223334445555555444432111                   0112234444555555555554443


Q ss_pred             cCh----hhhhccccCCeeeccCCcCCCCChh-----hhcCCCCCCEEEcCCCcccccc----ccccCCCCCccEEEccc
Q psy5670         477 INN----LSLNSLHQLAGLRLTENNISNISKG-----VFEKLSVLTILNLASNKIQKVE----AGTFDNNSNLVAIRLDG  543 (1269)
Q Consensus       477 ~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~-----~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~L~~  543 (1269)
                      ...    ..+..++.|++|++++|.+..-...     .-...++|++|.+.+|.|+.-.    ..++...+.|..|+|++
T Consensus       228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            221    2233444555555555554322211     1134567777777777765321    12333467777888888


Q ss_pred             ccc
Q psy5670         544 NYL  546 (1269)
Q Consensus       544 n~l  546 (1269)
                      |.+
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            877

>KOG1259|consensus

Probab=99.04  E-value=4.7e-11  Score=124.19  Aligned_cols=134  Identities=27%  Similarity=0.307  Sum_probs=97.0

Q ss_pred             hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEE
Q psy5670         483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL  562 (1269)
Q Consensus       483 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L  562 (1269)
                      .....|+++|||+|.|+.+... ..-.|.++.|++|+|.|..+..  +..+++|+.|||++|.++++.+.-..+-+++.|
T Consensus       281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            3446688899999998888764 4677889999999999887754  667888999999999888887766677788888


Q ss_pred             EccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc
Q psy5670         563 NISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL  619 (1269)
Q Consensus       563 ~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~  619 (1269)
                      .+++|.|+++....-.-+|..||+++|+|..+.....+++++.|+.+.|.+|.+..+
T Consensus       358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            888887776543322335666777777766665555555666666666666665543

>KOG3207|consensus

Probab=98.97  E-value=1.5e-10  Score=127.31  Aligned_cols=132  Identities=27%  Similarity=0.318  Sum_probs=67.1

Q ss_pred             CCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh-hhhcCCCCCCE
Q psy5670         438 STSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTI  514 (1269)
Q Consensus       438 l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~  514 (1269)
                      ++.|+.|.|++|.++  ++-..+..+|+|+.|++..|....+.......+..|++|+|++|++...+. .....++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            345566666666655  222334455666666666665333333344455566666666666644332 12355666666


Q ss_pred             EEcCCCcccccccccc------CCCCCccEEEcccccccccC--CcCCCCCCCcEEEccCCcC
Q psy5670         515 LNLASNKIQKVEAGTF------DNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISENLL  569 (1269)
Q Consensus       515 L~Ls~n~i~~~~~~~~------~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l  569 (1269)
                      |+++.+.+..+.....      ...++|+.|+++.|++.+.+  ..+..+++|+.|.+..|.+
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            6666666655432211      23455555555555554433  1223334444444444433

>KOG0531|consensus

Probab=98.97  E-value=7.6e-11  Score=140.47  Aligned_cols=220  Identities=32%  Similarity=0.397  Sum_probs=122.6

Q ss_pred             CCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECC
Q psy5670         391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG  470 (1269)
Q Consensus       391 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls  470 (1269)
                      +.++.++...+........ ...+..++.+.+..|.+..+. ..+..+++|+.|++.+|.+..+...+..+++|++|+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS  126 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence            3444455544433332222 134556666667777766522 23566677778888888777776556667777777777


Q ss_pred             CCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEccccccccc
Q psy5670         471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       471 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      +|.|+.+.+  +..++.|+.|++++|.+..+..  |..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+..+
T Consensus       127 ~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  127 FNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccccccccc--hhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            777777654  4456667777777777766654  5557777777777777776655 2 34556666677777766654


Q ss_pred             CCcCCCCCCCcEEEccCCcCccccccccCCC--ccEEECCCCCcccccccccccccccccEEEcCCCcccccc
Q psy5670         550 GGLFPKLPNLVWLNISENLLEWFDYALIPAD--LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT  620 (1269)
Q Consensus       550 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~--L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~  620 (1269)
                      .+ +..+..+..+++..|.++.+........  |+.+++++|.+..++  ..+..+..+..|++++|++..+.
T Consensus       202 ~~-~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  202 EG-LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             cc-hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccccc
Confidence            31 1222233333555555543322111111  445555555544432  11223334444444444444433

>KOG0531|consensus

Probab=98.95  E-value=8e-11  Score=140.31  Aligned_cols=246  Identities=27%  Similarity=0.311  Sum_probs=123.4

Q ss_pred             CCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEE
Q psy5670         437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN  516 (1269)
Q Consensus       437 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~  516 (1269)
                      .+..++.+.+..|.+..+-..+..+++|..|++.+|.|..+... +..+++|+.|+|++|.|+.+..  +..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhhe
Confidence            34455555555555555333345556666666666666655431 3455666666666666655543  44555566666


Q ss_pred             cCCCccccccccccCCCCCccEEEcccccccccCCc-CCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccc
Q psy5670         517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELG  595 (1269)
Q Consensus       517 Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~  595 (1269)
                      +++|.|..+.  .+..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+........+..+++..|.++.+.
T Consensus       147 l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  147 LSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             eccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence            6666665553  233355666666666666655432 3455566666666665554433222233344455566555544


Q ss_pred             ccccccccccccEEEcCCCccccc-cCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670         596 NYFEIESQLRLTYFDASSNKLTEL-TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP  674 (1269)
Q Consensus       596 ~~~~l~~~~~L~~LdLs~N~l~~~-~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~  674 (1269)
                      .......+ .|+.+++++|.+..+ ........+..|++++|++....  .+...+.+..+..+.|.+... ........
T Consensus       225 ~l~~~~~~-~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  300 (414)
T KOG0531|consen  225 GLNELVML-HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALS-EAISQEYI  300 (414)
T ss_pred             CcccchhH-HHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcch-hhhhcccc
Confidence            32111100 256666666666554 22222345556666666655443  233444555555555555432 11111111


Q ss_pred             CCCCCCCCceEecCCcc
Q psy5670         675 LPSHKNIPDFYIGENPF  691 (1269)
Q Consensus       675 ~~~~~~l~~l~l~~Np~  691 (1269)
                      .+....++.+++.+||.
T Consensus       301 ~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPI  317 (414)
T ss_pred             ccccccccccccccCcc
Confidence            23334455555555553

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=8.9e-10  Score=137.08  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=90.4

Q ss_pred             ccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccC
Q psy5670         829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH  908 (1269)
Q Consensus       829 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~  908 (1269)
                      ++.|+|++|.+....+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55677777777766677788888999999999999877777888999999999999999988888888999999999999


Q ss_pred             ccceeeecc-c--ccCCccEEEeeCCcccccCC
Q psy5670         909 NRITSFAVW-H--LSSQIQSITLTSNPWSCDCD  938 (1269)
Q Consensus       909 N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~C~  938 (1269)
                      |++++..|. +  ...++..+++.+|+..|.++
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            998866555 4  33566789999999999765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=5.9e-10  Score=93.18  Aligned_cols=60  Identities=37%  Similarity=0.514  Sum_probs=35.7

Q ss_pred             CCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccc
Q psy5670         852 ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI  911 (1269)
Q Consensus       852 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l  911 (1269)
                      +|++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555666666666555666666666666666666666666666666666666665543

...

>KOG1259|consensus

Probab=98.93  E-value=2.4e-10  Score=118.99  Aligned_cols=131  Identities=26%  Similarity=0.290  Sum_probs=76.5

Q ss_pred             CCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCC
Q psy5670         534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS  613 (1269)
Q Consensus       534 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~  613 (1269)
                      ..|+++||++|.|+.+.....-.|.++.|++|+|.|..++......+|+.||||+|.++++..+-  ..+.+++.|.|+.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh--~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWH--LKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhH--hhhcCEeeeehhh
Confidence            45666677777666666555556666666666666665544333445666666666666554321  1234566666666


Q ss_pred             CccccccCCcccCCccEEEccCcccccccC-CccCCCCCccEEEcCCCCccccc
Q psy5670         614 NKLTELTGNAIPHSVENLFLTNNLISKVQP-YTFFMKPNLTRVDLVGNRLKNIN  666 (1269)
Q Consensus       614 N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~-~~f~~~~~L~~LdLs~N~l~~l~  666 (1269)
                      |.|.+++...-.-+|..||+++|+|..+.. ..++++|-|+.+.|.+|.++.+.
T Consensus       362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            666655543333356666666666654432 24566666666666666666543

>KOG1909|consensus

Probab=98.90  E-value=3.9e-10  Score=121.03  Aligned_cols=219  Identities=23%  Similarity=0.223  Sum_probs=111.1

Q ss_pred             hcCCCCCcEEEccCCcccc----cccccccCCCCCcEEEccCCccc---ccC-------cccccCCCCCCEEEccCCCCC
Q psy5670         363 FKDLYRLQVLHLENNQIES----IHRNTFASLSNLHTLIMSNNKLK---RIE-------SNSLDSLTALSVLSLDNNELE  428 (1269)
Q Consensus       363 ~~~l~~L~~L~Ls~n~l~~----i~~~~f~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~Ls~n~i~  428 (1269)
                      .....+++.++|++|.+..    .....+.+.++|+..++++--..   ...       ..++.+++.|++|+||+|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4456788888888887752    22334566677777777653111   111       123345556666666666655


Q ss_pred             ccChh----hhcCCCCCcEEEccCCCCCCchhh-hcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh
Q psy5670         429 YIEEN----ALKNSTSLQDFHLNGNKLTEIPKV-LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK  503 (1269)
Q Consensus       429 ~~~~~----~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~  503 (1269)
                      .-.+.    .+..++.|++|.|.+|.+...... ++.  .|..|.  .       ......-+.|+.+...+|++..-+.
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccH
Confidence            43322    234456666666666655522110 000  000000  0       0001122345555555555533222


Q ss_pred             ----hhhcCCCCCCEEEcCCCccccc----cccccCCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCc
Q psy5670         504 ----GVFEKLSVLTILNLASNKIQKV----EAGTFDNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       504 ----~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                          ..|+..+.|+.+.++.|.|..-    ...+|..|++|+.|||..|.++.     +...++.+++|+.|++++|.++
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence                2355556666666666655321    22445566677777777776652     2345666777778888777776


Q ss_pred             cccccc-------cCCCccEEECCCCCcc
Q psy5670         571 WFDYAL-------IPADLQWLDIHGNQIS  592 (1269)
Q Consensus       571 ~~~~~~-------lp~~L~~L~Ls~n~l~  592 (1269)
                      .-+...       ..++|+.|.+.+|.|+
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhH
Confidence            432211       1234555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.89  E-value=2.3e-09  Score=127.79  Aligned_cols=178  Identities=31%  Similarity=0.352  Sum_probs=105.5

Q ss_pred             ccCCeeeccCCcCCCCChhhhcCC-CCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEc
Q psy5670         486 HQLAGLRLTENNISNISKGVFEKL-SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNI  564 (1269)
Q Consensus       486 ~~L~~L~Ls~n~l~~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L  564 (1269)
                      +.++.|++.+|.+..++.. ...+ ++|+.|++++|++..+. ..+..+++|+.|++++|++.+++......+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            3444444444444444432 1122 14555555555554442 2334455555555555555555544445555666666


Q ss_pred             cCCcCcccccc-ccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc-ccCCcccCCccEEEccCccccccc
Q psy5670         565 SENLLEWFDYA-LIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE-LTGNAIPHSVENLFLTNNLISKVQ  642 (1269)
Q Consensus       565 s~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~-~~~~~~~~~L~~L~Ls~N~i~~~~  642 (1269)
                      ++|+++.++.. ..+..|++|.+++|.+.....  .+..+.++..+.+++|++.. ......+.+++.|++++|.++.+.
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            66666555543 245556666777664322221  23445667777788888876 333444567899999999998887


Q ss_pred             CCccCCCCCccEEEcCCCCcccccccc
Q psy5670         643 PYTFFMKPNLTRVDLVGNRLKNINQTA  669 (1269)
Q Consensus       643 ~~~f~~~~~L~~LdLs~N~l~~l~~~~  669 (1269)
                      +  +....+|+.|++++|.+..+.+..
T Consensus       272 ~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         272 S--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             c--ccccCccCEEeccCccccccchhh
Confidence            6  788899999999999888765543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.1e-09  Score=91.44  Aligned_cols=61  Identities=34%  Similarity=0.449  Sum_probs=51.6

Q ss_pred             CCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccC
Q psy5670         827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI  887 (1269)
Q Consensus       827 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l  887 (1269)
                      ++|+.|++++|+|+.|++++|.++++|++|+|++|.++.+++++|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3677888888888888888888888888888888888888888888888888888888875

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=6.9e-09  Score=123.71  Aligned_cols=175  Identities=33%  Similarity=0.431  Sum_probs=74.7

Q ss_pred             CCCcEEEccCCCCCCchhhhcCCC-CCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEc
Q psy5670         439 TSLQDFHLNGNKLTEIPKVLRNLH-SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL  517 (1269)
Q Consensus       439 ~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L  517 (1269)
                      +.++.|++.+|.++++|....... +|+.|++++|.+..+. ..+..+++|+.|++++|++..++.. ....+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhheec
Confidence            344444444444444444333332 4444444444444332 1233444444444444444444432 113444445555


Q ss_pred             CCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccc-cccccCCCccEEECCCCCcccccc
Q psy5670         518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF-DYALIPADLQWLDIHGNQISELGN  596 (1269)
Q Consensus       518 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~lp~~L~~L~Ls~n~l~~~~~  596 (1269)
                      ++|++..++... ..+..|++|.+++|.+..++..+..+.++..+.+.+|++..+ .....+.++++|++++|.+++++.
T Consensus       194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         194 SGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             cCCccccCchhh-hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            555444443321 123335555555554444444444555555555555544431 111222234444444444444332


Q ss_pred             cccccccccccEEEcCCCccccc
Q psy5670         597 YFEIESQLRLTYFDASSNKLTEL  619 (1269)
Q Consensus       597 ~~~l~~~~~L~~LdLs~N~l~~~  619 (1269)
                         +....+++.|++++|.+...
T Consensus       273 ---~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         273 ---LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ---ccccCccCEEeccCcccccc
Confidence               23334455555555555443

>KOG0532|consensus

Probab=98.76  E-value=3.6e-10  Score=127.91  Aligned_cols=171  Identities=23%  Similarity=0.315  Sum_probs=111.0

Q ss_pred             cEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCC
Q psy5670         394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL  473 (1269)
Q Consensus       394 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  473 (1269)
                      ...+++.|++..++. .+..+-.|+.+.|..|.+..+. .++.++..|..|+|+.|++..+|..+..++ |+.|-+++|+
T Consensus        78 ~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccccCch-HHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            345566666555432 2333445566666666665554 346666777777777777777777666665 7777777777


Q ss_pred             CCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcC
Q psy5670         474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLF  553 (1269)
Q Consensus       474 i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~  553 (1269)
                      ++.++. .++....|..|+.+.|.+..++.. +.++.+|+.|++..|++..++.+..  .-.|..||++.|++..||-.|
T Consensus       155 l~~lp~-~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  155 LTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             cccCCc-ccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecchhh
Confidence            766554 344666677777777777666654 4667777777777777766655432  345777777777777777777


Q ss_pred             CCCCCCcEEEccCCcCcc
Q psy5670         554 PKLPNLVWLNISENLLEW  571 (1269)
Q Consensus       554 ~~l~~L~~L~Ls~n~l~~  571 (1269)
                      ..+..|++|.|.+|.+++
T Consensus       231 r~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhheeeeeccCCCCC
Confidence            777777777777776664

>KOG0532|consensus

Probab=98.73  E-value=6.2e-10  Score=126.04  Aligned_cols=192  Identities=23%  Similarity=0.250  Sum_probs=143.5

Q ss_pred             CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670         440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS  519 (1269)
Q Consensus       440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  519 (1269)
                      --...+++.|++.++|..+..+..|+.+.+..|.+..++. ++.++..|+.|+|+.|++..+|...+ .+ -|+.|-+++
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sN  152 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSN  152 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCChhhh-cC-cceeEEEec
Confidence            3445677778888888777777778888888887776544 66778888888888888888877543 33 388888888


Q ss_pred             CccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670         520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE  599 (1269)
Q Consensus       520 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~  599 (1269)
                      |+++.++. .++...+|..||.+.|.+..+|..+.++.+|+.|++..|++..++....--.|..||+|.|+++.+|-.  
T Consensus       153 Nkl~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~--  229 (722)
T KOG0532|consen  153 NKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVD--  229 (722)
T ss_pred             CccccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchh--
Confidence            88877654 445778888899999999998888888899999999999888776655544688899999999988863  


Q ss_pred             ccccccccEEEcCCCccccccCCcc----cCCccEEEccCcc
Q psy5670         600 IESQLRLTYFDASSNKLTELTGNAI----PHSVENLFLTNNL  637 (1269)
Q Consensus       600 l~~~~~L~~LdLs~N~l~~~~~~~~----~~~L~~L~Ls~N~  637 (1269)
                      +..+..|++|-|.+|.+.+-+..-.    -+-.|+|+..-++
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            4577889999999998887443211    1234666666653

>KOG4658|consensus

Probab=98.64  E-value=2e-08  Score=127.29  Aligned_cols=104  Identities=29%  Similarity=0.316  Sum_probs=48.6

Q ss_pred             cccEEEcCCCC--CCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670         222 NLRVLDLSNNS--FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY  299 (1269)
Q Consensus       222 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  299 (1269)
                      +|++|-+.+|.  +..++.+.|..++.|+.|+|++|.--...|..++++-+|++|+++++.+..+|.+ +.+++.|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheec
Confidence            45555444443  3444444444555555555554443333344455555555555555555555443 24455555555


Q ss_pred             eeCCcccccCcccccCCCCCCEEECcC
Q psy5670         300 LQNNSINVLAPGIFNVLTQLIVLDLSN  326 (1269)
Q Consensus       300 L~~n~l~~~~~~~~~~l~~L~~L~L~~  326 (1269)
                      +..+.-....++....+++|++|.+..
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            544433222234444455555555443

>KOG4658|consensus

Probab=98.33  E-value=4.1e-07  Score=115.69  Aligned_cols=278  Identities=21%  Similarity=0.164  Sum_probs=151.8

Q ss_pred             CCCcEEEccCCcccccccccccCCCCCcEEEccCCc--ccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670         367 YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK--LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF  444 (1269)
Q Consensus       367 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  444 (1269)
                      ...+.+.+-+|.+..+...  ..++.|++|-+..|.  +..+....|..++.|+.|||++|.-.+..|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4566666666666555432  244577777777775  555555667778888888888776666666777778888888


Q ss_pred             EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC--CCCChhhhcCCCCCCEEEcCCCcc
Q psy5670         445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNKI  522 (1269)
Q Consensus       445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~f~~l~~L~~L~Ls~n~i  522 (1269)
                      ++++..+..+|..+.+++.|.+|++..+.-....+.....+.+|+.|.+..-..  +...-.....+.+|+.+.......
T Consensus       601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            888888888888888888888888887765555455556677788777765442  222222234555555555533322


Q ss_pred             ccccccccCCCCCcc----EEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccc
Q psy5670         523 QKVEAGTFDNNSNLV----AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYF  598 (1269)
Q Consensus       523 ~~~~~~~~~~~~~L~----~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~  598 (1269)
                       . ....+.....|.    .+.+.++........+..+.+|+.|.+.++.+......... +.+.++             
T Consensus       681 -~-~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~-~~~~~~-------------  744 (889)
T KOG4658|consen  681 -L-LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE-SLIVLL-------------  744 (889)
T ss_pred             -H-hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccc-ccchhh-------------
Confidence             0 011112222222    22222333333444455566666666666655422110000 000000             


Q ss_pred             cccccccccEEEcCCC-ccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccc
Q psy5670         599 EIESQLRLTYFDASSN-KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI  665 (1269)
Q Consensus       599 ~l~~~~~L~~LdLs~N-~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l  665 (1269)
                         .++++..+.+.++ .........++++|+.|.+..+.....+......+..++.+-+..+.+.+.
T Consensus       745 ---~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  745 ---CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             ---hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence               0112222222222 233334445677888888887755444333444445555555555555443

>KOG1859|consensus

Probab=98.30  E-value=2.5e-08  Score=115.92  Aligned_cols=135  Identities=21%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             EEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccC
Q psy5670         808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI  887 (1269)
Q Consensus       808 l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l  887 (1269)
                      .+.+.|.+..++. ++.-++.|+.|+|++|+++.++  .+..|+.|++|||+.|.++.++.-.-.++. |+.|.|++|.+
T Consensus       169 a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             hhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence            3444555555442 4445778999999999999987  788899999999999999999886666665 99999999999


Q ss_pred             cccChhhhhcCcccceEeccCccceeeecc-c--ccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670         888 IYISNRTFLSLTHLKVLQLDHNRITSFAVW-H--LSSQIQSITLTSNPWSCDCDFTEKFRDYLQ  948 (1269)
Q Consensus       888 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~  948 (1269)
                      +++.  ...++.+|+-|||+.|-|.....- +  .+..|..|.|.|||+-|.-...+...+|+.
T Consensus       245 ~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~  306 (1096)
T KOG1859|consen  245 TTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLH  306 (1096)
T ss_pred             Hhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhc
Confidence            9885  357899999999999999988776 3  788999999999999987664444445554

>PLN03150 hypothetical protein; Provisional

Probab=98.22  E-value=1.8e-06  Score=107.81  Aligned_cols=107  Identities=18%  Similarity=0.138  Sum_probs=94.3

Q ss_pred             CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccc
Q psy5670         805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY  884 (1269)
Q Consensus       805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~  884 (1269)
                      ++.|+|++|.++..-+..+..+++|+.|+|++|++....+..|..+++|+.|+|++|+++...+..|.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            47899999999876667888999999999999999988888899999999999999999988888999999999999999


Q ss_pred             ccCcccChhhhhc-CcccceEeccCccc
Q psy5670         885 NKIIYISNRTFLS-LTHLKVLQLDHNRI  911 (1269)
Q Consensus       885 N~l~~i~~~~f~~-l~~L~~L~L~~N~l  911 (1269)
                      |++++..|..+.. ..++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            9999777766665 35677889998853

>KOG1644|consensus

Probab=98.12  E-value=3.5e-06  Score=84.41  Aligned_cols=122  Identities=23%  Similarity=0.290  Sum_probs=78.4

Q ss_pred             cEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccc
Q psy5670         806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN  885 (1269)
Q Consensus       806 ~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N  885 (1269)
                      ++++|.+.++..+..-. ....+...+||++|.|..++  .|..++.|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|
T Consensus        22 ~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhcc-ccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            45677777777666411 11345667777777766654  4666777777777777777777765556667777777777


Q ss_pred             cCcccCh-hhhhcCcccceEeccCccceeeecc--c---ccCCccEEEeeC
Q psy5670         886 KIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW--H---LSSQIQSITLTS  930 (1269)
Q Consensus       886 ~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~--~---~~~~l~~l~l~~  930 (1269)
                      +|..+.+ .-+..+|+|++|.+-+|.++.-...  +   .+++++.||+++
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7666543 3345567777777777777665544  2   566777776654

>TIGR00864 PCC polycystin cation channel protein

Probab=98.10  E-value=1.8e-06  Score=116.00  Aligned_cols=68  Identities=16%  Similarity=0.370  Sum_probs=50.2

Q ss_pred             ccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670         906 LDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       906 L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      |++|+|+.+++. | .+++|+.|+|++|||+|||++ .||++|++.....+.....+.|..|...++..+.
T Consensus         2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L-~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~   71 (2740)
T TIGR00864         2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL-ARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLL   71 (2740)
T ss_pred             CCCCcCCccChHHhccCCCceEEEeeCCcccccccc-HHHHHHHHhcCccccCCcccCCCCChHHCCCCcc
Confidence            344444444444 3 345667899999999999997 7999999988766666678999999987664444

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1859|consensus

Probab=98.10  E-value=6.6e-08  Score=112.52  Aligned_cols=175  Identities=25%  Similarity=0.291  Sum_probs=106.7

Q ss_pred             cccCCCCCCEEEccCCCCCccChhhhcC-CCCCcEEEccCCCCCCchhhhcC----------CCCCcEEECCCCCCCccC
Q psy5670         410 SLDSLTALSVLSLDNNELEYIEENALKN-STSLQDFHLNGNKLTEIPKVLRN----------LHSLKTLDLGDNLITEIN  478 (1269)
Q Consensus       410 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~lp~~l~~----------l~~L~~L~Ls~n~i~~~~  478 (1269)
                      .+..+.+|+.|.|.++++....  .+.. -..|++|-. .|.+..+-..|..          .-.|.+.+++.|.+....
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD  180 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD  180 (1096)
T ss_pred             eeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence            3445678888888888776421  1111 123444422 2333322211110          134677777777776553


Q ss_pred             hhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670         479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN  558 (1269)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~  558 (1269)
                       .++.-++.|+.|+|+.|++..+.  .+..++.|+.|||++|.+..++.-...+|. |+.|.+++|.++.+- .+.++.+
T Consensus       181 -~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~Lks  255 (1096)
T KOG1859|consen  181 -ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKS  255 (1096)
T ss_pred             -HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhh
Confidence             35667778888888888887665  367788888888888888777665555665 888888888877663 2456777


Q ss_pred             CcEEEccCCcCccccccc---cCCCccEEECCCCCcc
Q psy5670         559 LVWLNISENLLEWFDYAL---IPADLQWLDIHGNQIS  592 (1269)
Q Consensus       559 L~~L~Ls~n~l~~~~~~~---lp~~L~~L~Ls~n~l~  592 (1269)
                      |+.||+++|-|..+..-.   .-..|+.|.|.||.+-
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777788877665432111   1134566666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.08  E-value=6.2e-06  Score=81.06  Aligned_cols=108  Identities=19%  Similarity=0.367  Sum_probs=52.9

Q ss_pred             cCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhc
Q psy5670         818 VGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS  897 (1269)
Q Consensus       818 l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~  897 (1269)
                      |+..+|.++.+|+.+.+.+ .+..|...+|.++++|+.+++.++ +..+...+|.++.+|+.+.+.+ .+..++...|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4555666666666666653 466666666666666666666653 6666666666666666666654 566666666666


Q ss_pred             CcccceEeccCccceeeecc-cccCCccEEEee
Q psy5670         898 LTHLKVLQLDHNRITSFAVW-HLSSQIQSITLT  929 (1269)
Q Consensus       898 l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~  929 (1269)
                      +++|+.+++..| ++.++.. |....++.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNCNLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred             cccccccccCcc-ccEEchhhhcCCCceEEEEC
Confidence            666666666554 5555555 422255555543

>KOG1644|consensus

Probab=98.07  E-value=4.2e-06  Score=83.79  Aligned_cols=102  Identities=26%  Similarity=0.300  Sum_probs=87.1

Q ss_pred             ccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccC
Q psy5670         829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH  908 (1269)
Q Consensus       829 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~  908 (1269)
                      =+.++|++.+|..+.. .=.-+.+...+||++|.+..+..  |..+++|.+|.|++|+|+.|++..-.-++.|+.|.|.+
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4578888888888765 11234578899999999999874  89999999999999999999998877789999999999


Q ss_pred             ccceeeecc--c-ccCCccEEEeeCCcc
Q psy5670         909 NRITSFAVW--H-LSSQIQSITLTSNPW  933 (1269)
Q Consensus       909 N~l~~~~~~--~-~~~~l~~l~l~~Np~  933 (1269)
                      |.|..+..-  + ..++|++|.+-+||.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCch
Confidence            999988765  3 788999999999994

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.06  E-value=1.1e-05  Score=79.37  Aligned_cols=120  Identities=23%  Similarity=0.393  Sum_probs=43.8

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      .++++|+.+.+.. .+..++...|..+++|+.+.+..+ +..+....|.+      +.+|+.+.+.+ .+..+....|..
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~------~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSN------CKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-------TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeec------ccccccccccc-cccccccccccc
Confidence            4444455544442 344444444555545555554442 44443333332      23444444433 344444445555


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCC
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDL  295 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L  295 (1269)
                      +++|+.+.+..+ +..+....|.++ +|+.+.+.. .+..++...|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555665555443 444555555554 555555544 3455555555555544

>KOG4579|consensus

Probab=98.05  E-value=3e-07  Score=85.76  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEecc
Q psy5670         828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD  907 (1269)
Q Consensus       828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~  907 (1269)
                      .|+..+|++|.+...++..-...+.+++|+|++|+|+.++.. |..++.|+.|+++.|.+...+.-.+. +.+|-.|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCC
Confidence            455566666666666555444556778888888888888876 88888888888888888888765554 8888888888


Q ss_pred             Cccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHHH
Q psy5670         908 HNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRDY  946 (1269)
Q Consensus       908 ~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~w  946 (1269)
                      +|.+..++.+ |..+....+++.++||.-.|.-  .++.|
T Consensus       132 ~na~~eid~dl~~s~~~al~~lgnepl~~~~~~--klqa~  169 (177)
T KOG4579|consen  132 ENARAEIDVDLFYSSLPALIKLGNEPLGDETKK--KLQAL  169 (177)
T ss_pred             CCccccCcHHHhccccHHHHHhcCCcccccCcc--ccccc
Confidence            8888888888 5444555677899999999983  35555

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.05  E-value=5.6e-06  Score=81.03  Aligned_cols=99  Identities=26%  Similarity=0.462  Sum_probs=53.7

Q ss_pred             eeEEEEcccCCHHHHHHHHHHhhhcC-----CCCceE--E--------EecccCCCCCchhHHHHHHHHhcceEEEEecc
Q psy5670        1085 FDAFVSYSSKDEAFVAEELAPILENG-----DPAYKL--C--------LHYREFPVGGYIGDTIVQAVESSRRTIMVLSE 1149 (1269)
Q Consensus      1085 yDafvsy~~~d~~~v~~~l~~~Le~~-----~~~~~l--~--------~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~ 1149 (1269)
                      |.|||||+++|..+..+.|...++..     +..+.+  .        -...|....+.+-..|.+.|+.|..+||++++
T Consensus         1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~   80 (130)
T PF08937_consen    1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP   80 (130)
T ss_dssp             ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred             CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            68999999999996556688777762     111211  0        11222234557889999999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q psy5670        1150 NFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKD 1187 (1269)
Q Consensus      1150 ~~~~s~w~~~e~~~a~~~~~~~~~~~i~i~~~~~~~~~ 1187 (1269)
                      +.-.+.|..+|++.|+.    .+..||.|.+.+.....
T Consensus        81 ~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~~~~~~~  114 (130)
T PF08937_consen   81 NTAKSKWVNWEIEYALK----KGKPIIGVYLPGLKDRD  114 (130)
T ss_dssp             T----HHHHHHHHHHTT----T---EEEEETT--SGGG
T ss_pred             CcccCcHHHHHHHHHHH----CCCCEEEEECCCCCCCc
Confidence            99999999999998877    44889999988875443

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>KOG2982|consensus

Probab=98.04  E-value=1.1e-06  Score=92.46  Aligned_cols=202  Identities=19%  Similarity=0.251  Sum_probs=108.7

Q ss_pred             CCCEEEccCCCCCccChh-hh-cCCCCCcEEEccCCCCCCc---hhhhcCCCCCcEEECCCCCCCccChhhhhccccCCe
Q psy5670         416 ALSVLSLDNNELEYIEEN-AL-KNSTSLQDFHLNGNKLTEI---PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAG  490 (1269)
Q Consensus       416 ~L~~L~Ls~n~i~~~~~~-~~-~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  490 (1269)
                      .++-|.+.++.|..+... .| ..++.++++||.+|.++..   ...+.++|.|++|+++.|.+...+...-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            444555666665544331 12 3467788888888888754   345678888888888888877654322134567888


Q ss_pred             eeccCCcCCC-CChhhhcCCCCCCEEEcCCCccccccc--cccCC-CCCccEEEccccccc---ccCCcCCCCCCCcEEE
Q psy5670         491 LRLTENNISN-ISKGVFEKLSVLTILNLASNKIQKVEA--GTFDN-NSNLVAIRLDGNYLT---DIGGLFPKLPNLVWLN  563 (1269)
Q Consensus       491 L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~-~~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~  563 (1269)
                      |.|.+..+.- -....+..+|.++.|.++.|.+..+..  ..... .+.+++|.+.+|...   ++...-.-.|++..+-
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            8888877721 112345677888888888875433211  11111 224444444444221   1111111134455555


Q ss_pred             ccCCcCccccc----cccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc
Q psy5670         564 ISENLLEWFDY----ALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE  618 (1269)
Q Consensus       564 Ls~n~l~~~~~----~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~  618 (1269)
                      +..|.+.+...    ..+ +.+..|+|+.|+|.+......+..++.|..|.+++|.+.+
T Consensus       206 v~e~PlK~~s~ek~se~~-p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPF-PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eecCcccchhhcccCCCC-CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            55555543321    111 2344556666666555444445555555666565555543

>KOG3678|consensus

Probab=97.98  E-value=3.6e-05  Score=85.23  Aligned_cols=119  Identities=23%  Similarity=0.432  Sum_probs=91.8

Q ss_pred             cCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccch------
Q psy5670        1079 DDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFI------ 1152 (1269)
Q Consensus      1079 ~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~------ 1152 (1269)
                      ..-++..|+||||....-.-... |+.++-+ -.||++|++-.-+..|. +-+.+...|..+|..|+|+||+.+      
T Consensus       607 a~~skq~DVFISYRRstGnQLAS-LiKV~LQ-L~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD  683 (832)
T KOG3678|consen  607 AMLSKQIDVFISYRRSTGNQLAS-LIKVLLQ-LRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLND  683 (832)
T ss_pred             ccccCCcceEEEeeccccHHHHH-HHHHHHH-hcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcc
Confidence            34468899999997665554444 4444444 57999999999999886 467888999999999999999998      


Q ss_pred             --hhhhhHHHHHHHHHHHhcCCCeEEEEEeCCC----CCCCCCHHHHHHHhcCceEEcC
Q psy5670        1153 --KSEWCRYEFKSAHHQVLRGKKRLIVILLGEV----PQKDLDPDIRLYLKSNTYLQWG 1205 (1269)
Q Consensus      1153 --~s~w~~~e~~~a~~~~~~~~~~~i~i~~~~~----~~~~~~~~l~~~l~~~~~l~w~ 1205 (1269)
                        ..+|...|+..|+..    ++.+|+|+-.-.    +.+++|..++.+.+-+. ++|-
T Consensus       684 ~nCeDWVHKEl~~Afe~----~KNIiPI~D~aFE~Pt~ed~iPnDirmi~kyNG-vKWv  737 (832)
T KOG3678|consen  684 DNCEDWVHKELKCAFEH----QKNIIPIFDTAFEFPTKEDQIPNDIRMITKYNG-VKWV  737 (832)
T ss_pred             ccHHHHHHHHHHHHHHh----cCCeeeeecccccCCCchhcCcHHHHHHHhccC-eeee
Confidence              357999999988863    477899886632    45678999987776544 7884

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=2.1e-06  Score=89.18  Aligned_cols=69  Identities=20%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             ccccCCCCccEEEcCCCCCcccCc----hhhcCCCCCcEEEccCCcccccccccc-------------cCCCCCcEEEcc
Q psy5670         337 ATFSGLHRLVVLNIAYNKMNKLDS----SIFKDLYRLQVLHLENNQIESIHRNTF-------------ASLSNLHTLIMS  399 (1269)
Q Consensus       337 ~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f-------------~~l~~L~~L~Ls  399 (1269)
                      .++.+|++|+.++||.|.+..-.+    ..++....|.+|.+++|.+..+..+.+             .+-|.|+++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            345566677777777666554332    234455677777777777654433222             234556666666


Q ss_pred             CCcccc
Q psy5670         400 NNKLKR  405 (1269)
Q Consensus       400 ~n~l~~  405 (1269)
                      .|++..
T Consensus       166 rNRlen  171 (388)
T COG5238         166 RNRLEN  171 (388)
T ss_pred             cchhcc
Confidence            665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=3.4e-05  Score=88.08  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=18.4

Q ss_pred             cccEEEcCCCccccccCCcccCCccEEEccCcc
Q psy5670         605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNL  637 (1269)
Q Consensus       605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~  637 (1269)
                      +|++|++++|....++ ..+|.+|+.|++++|.
T Consensus       157 SLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~n~  188 (426)
T PRK15386        157 SLKTLSLTGCSNIILP-EKLPESLQSITLHIEQ  188 (426)
T ss_pred             cccEEEecCCCcccCc-ccccccCcEEEecccc
Confidence            5666666665544322 3466677777776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.90  E-value=4.3e-06  Score=86.93  Aligned_cols=241  Identities=20%  Similarity=0.156  Sum_probs=117.0

Q ss_pred             CCCCCCEEEccCCCCCccChhh----hcCCCCCcEEEccCCCCC----Cchh-------hhcCCCCCcEEECCCCCCCcc
Q psy5670         413 SLTALSVLSLDNNELEYIEENA----LKNSTSLQDFHLNGNKLT----EIPK-------VLRNLHSLKTLDLGDNLITEI  477 (1269)
Q Consensus       413 ~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~----~lp~-------~l~~l~~L~~L~Ls~n~i~~~  477 (1269)
                      .+..+..++|++|-|......+    +.+-.+|+..+++.-...    .++.       ++-.||.|+.++||+|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3566777778877776544333    333456666666553322    2222       344566677777777666543


Q ss_pred             Chhh----hhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC---
Q psy5670         478 NNLS----LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG---  550 (1269)
Q Consensus       478 ~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~---  550 (1269)
                      .+..    ++.-+.|+.|.+++|.++.+..+-++.  .|.  .|..|+       ...+-+.|+.+....|++..-+   
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~--~la~nK-------Kaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALF--HLAYNK-------KAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHH--HHHHHh-------hhccCCCceEEEeccchhccCcHHH
Confidence            3322    233455666666666665443221110  000  000110       0112345555555555555332   


Q ss_pred             --CcCCCCCCCcEEEccCCcCcccccc-------ccCCCccEEECCCCCccccccc---ccccccccccEEEcCCCcccc
Q psy5670         551 --GLFPKLPNLVWLNISENLLEWFDYA-------LIPADLQWLDIHGNQISELGNY---FEIESQLRLTYFDASSNKLTE  618 (1269)
Q Consensus       551 --~~~~~l~~L~~L~Ls~n~l~~~~~~-------~lp~~L~~L~Ls~n~l~~~~~~---~~l~~~~~L~~LdLs~N~l~~  618 (1269)
                        ..+..-.+|+.+.+..|.|..-+..       ....+|+.|||.+|.++..+..   ..+..++.|+.|.+..|-++.
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence              1222334566666666665532111       1234666777777766644431   233445567777777776654


Q ss_pred             ccCCc--------ccCCccEEEccCcccccccC-Cc------cCCCCCccEEEcCCCCccc
Q psy5670         619 LTGNA--------IPHSVENLFLTNNLISKVQP-YT------FFMKPNLTRVDLVGNRLKN  664 (1269)
Q Consensus       619 ~~~~~--------~~~~L~~L~Ls~N~i~~~~~-~~------f~~~~~L~~LdLs~N~l~~  664 (1269)
                      -....        ..++|..|-..+|.+.+-.- ..      =..+|-|..|.+.+|+|+.
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            33221        12356666666665533211 10      1134555555555565553

>KOG2120|consensus

Probab=97.78  E-value=5.1e-07  Score=94.92  Aligned_cols=108  Identities=20%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CCCcEEEccCCCCCC-CCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC-CCccccCcccccCCCCcc
Q psy5670         269 NSLTVLNLSVNNLVN-IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE-LTEEWVNAATFSGLHRLV  346 (1269)
Q Consensus       269 ~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~  346 (1269)
                      +.|++|||+...|+. -...++..|.+|+.|.|.++.+.+-....++...+|+.|+|+.+. ++.. -....+.+|+.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHh
Confidence            357777777665552 112334567777777777777766555556667777777777653 2221 1122345667777


Q ss_pred             EEEcCCCCCcccCc-hhhcC-CCCCcEEEccCC
Q psy5670         347 VLNIAYNKMNKLDS-SIFKD-LYRLQVLHLENN  377 (1269)
Q Consensus       347 ~L~Ls~n~l~~~~~-~~~~~-l~~L~~L~Ls~n  377 (1269)
                      +|++++|.+..... ..... -++|..|+++++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            77777765543211 11111 135555666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.1e-05  Score=60.07  Aligned_cols=38  Identities=37%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             CCCEEeCCCCCCcccCcccccCCcccCeeecccccCccc
Q psy5670         852 ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI  890 (1269)
Q Consensus       852 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i  890 (1269)
                      +|++|+|++|+|+.+++ .|.+|++|++|+|++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555543 344555555555555555444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00012  Score=83.64  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=14.4

Q ss_pred             CCcEEEccCCcCccccccccCCCccEEECCCC
Q psy5670         558 NLVWLNISENLLEWFDYALIPADLQWLDIHGN  589 (1269)
Q Consensus       558 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n  589 (1269)
                      +|+.|++++|....++ ..+|.+|+.|+++.+
T Consensus       157 SLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNIILP-EKLPESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcccCc-ccccccCcEEEeccc
Confidence            4455555544433222 234555555555544

>KOG2982|consensus

Probab=97.77  E-value=9.9e-06  Score=85.44  Aligned_cols=85  Identities=24%  Similarity=0.344  Sum_probs=37.7

Q ss_pred             CCCccEEEcCCCCCccc--CchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCC
Q psy5670         342 LHRLVVLNIAYNKMNKL--DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALS  418 (1269)
Q Consensus       342 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  418 (1269)
                      ++.++++||.+|.+++-  ....+.++|.|+.|+++.|.+.......-....+|+.|-|.+..+.-.. ...+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34455555555554431  1223445555555555555544322111023445555555554443211 12234455555


Q ss_pred             EEEccCCC
Q psy5670         419 VLSLDNNE  426 (1269)
Q Consensus       419 ~L~Ls~n~  426 (1269)
                      +|.++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            55555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=2.4e-05  Score=59.74  Aligned_cols=39  Identities=33%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             ccCeeecccccCcccChhhhhcCcccceEeccCccceeee
Q psy5670         876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA  915 (1269)
Q Consensus       876 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  915 (1269)
                      +|++|+|++|+|+.+++ .+.++++|++|++++|+|+.++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            56666666666666654 3556666666666666666554

...

>KOG2120|consensus

Probab=97.71  E-value=1.5e-06  Score=91.54  Aligned_cols=83  Identities=25%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             CCCEEEccCCCCCcc-ChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEECCCCC-CCccCh-hhhhccccCCee
Q psy5670         416 ALSVLSLDNNELEYI-EENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLDLGDNL-ITEINN-LSLNSLHQLAGL  491 (1269)
Q Consensus       416 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L  491 (1269)
                      .|+.|||++..|+.- ....+..|.+|+.|.|.++++.+ +...+....+|+.|+++.+. ++.... ..+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555431 12334556666666666666552 33344555566666666542 222111 123445555555


Q ss_pred             eccCCcC
Q psy5670         492 RLTENNI  498 (1269)
Q Consensus       492 ~Ls~n~l  498 (1269)
                      +|+.|.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            5555544

>KOG4579|consensus

Probab=97.70  E-value=4.1e-06  Score=78.34  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             ccEEEccCcCcccccc--ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEec
Q psy5670         829 LQILFLNSSHVETIHN--KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL  906 (1269)
Q Consensus       829 L~~L~l~~n~i~~i~~--~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L  906 (1269)
                      +..++|+++.+-.|..  ..+.....|+..+|++|.+..+++..-...+.++.|+|++|+|+.+|.+ |..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            4456677776665543  2344566788889999999999885445556889999999999999988 899999999999


Q ss_pred             cCccceeeecc-cccCCccEEEeeCCc
Q psy5670         907 DHNRITSFAVW-HLSSQIQSITLTSNP  932 (1269)
Q Consensus       907 ~~N~l~~~~~~-~~~~~l~~l~l~~Np  932 (1269)
                      +.|.|...+.- +.+.++.+|+..+|.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCc
Confidence            99999888877 567777778777775

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.60  E-value=0.00054  Score=69.18  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=82.7

Q ss_pred             EEEEcccCCH---HHHHHHHHHhhhcCCCCceEEEecccCC--CCCchhHHHHHHHHhcceEEEEecccchh--hhh---
Q psy5670        1087 AFVSYSSKDE---AFVAEELAPILENGDPAYKLCLHYREFP--VGGYIGDTIVQAVESSRRTIMVLSENFIK--SEW--- 1156 (1269)
Q Consensus      1087 afvsy~~~d~---~~v~~~l~~~Le~~~~~~~l~~~~rd~~--~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~--s~w--- 1156 (1269)
                      |||+||++++   +||.. |...|++ ..|+.+.++..|..  ++.....-+.+.++++.++|+|.||.+..  ..|   
T Consensus         3 VfI~Ys~d~~~h~~~V~~-la~~L~~-~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~~~~~~~~~~   80 (150)
T PF08357_consen    3 VFISYSHDSEEHKEWVLA-LAEFLRQ-NCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYKERYDKKADE   80 (150)
T ss_pred             EEEEeCCCCHHHHHHHHH-HHHHHHh-ccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchhHHHHHhhcc
Confidence            8999999777   56866 9999996 55999999999994  48889999999999999999999965541  111   


Q ss_pred             --------hHHH-HHHHHHHH----hcCC--CeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCc
Q psy5670        1157 --------CRYE-FKSAHHQV----LRGK--KRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDK 1207 (1269)
Q Consensus      1157 --------~~~e-~~~a~~~~----~~~~--~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~ 1207 (1269)
                              +..+ +..++...    .++.  .|.|+|.++..++..+|+.++.    .+.-+|++.
T Consensus        81 ~~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f~~~~~~~iP~~l~~----~~~y~lp~d  142 (150)
T PF08357_consen   81 REGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYFDYSDEEDIPEPLRG----LPRYRLPKD  142 (150)
T ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEeCCCCcccCCHHHhc----CCcccChHh
Confidence                    1101 22333322    2223  7899999988888888886554    455566543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>KOG4341|consensus

Probab=97.59  E-value=4e-06  Score=92.72  Aligned_cols=16  Identities=19%  Similarity=0.133  Sum_probs=9.9

Q ss_pred             CchhhhHHHHHHHhhh
Q psy5670           6 GSVFITVLISALGLVS   21 (1269)
Q Consensus         6 ~~~~~~~~~~~~~~~~   21 (1269)
                      |....+-+++++...+
T Consensus        76 PpEl~lkvFS~LDtks   91 (483)
T KOG4341|consen   76 PPELLLKVFSMLDTKS   91 (483)
T ss_pred             CHHHHHHHHHHHhHHH
Confidence            4556666777776544

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.35  E-value=0.00013  Score=58.33  Aligned_cols=37  Identities=30%  Similarity=0.705  Sum_probs=30.7

Q ss_pred             CcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccc
Q psy5670         931 NPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVG  969 (1269)
Q Consensus       931 Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~  969 (1269)
                      |||.|||++ .||+.|++. ...+.+...++|.+|+..+
T Consensus         1 NP~~CdC~l-~~~~~w~~~-~~~~~~~~~~~C~~P~~~~   37 (51)
T smart00082        1 NPFICDCEL-RWLLRWLQA-NEHLQDPVSLRCASPSSLR   37 (51)
T ss_pred             CCccCcCCc-hHHHHHHHh-CCccCCCCCCEeCCcHHHH
Confidence            899999997 799999988 3455566789999999874

>KOG4341|consensus

Probab=97.25  E-value=2.3e-05  Score=86.80  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             CCCCCcEEEccCCCCC-Cc-----hhhhcCCCCCcEEECCCCCCC-ccChhhhhccccCCeeeccCCcC
Q psy5670         437 NSTSLQDFHLNGNKLT-EI-----PKVLRNLHSLKTLDLGDNLIT-EINNLSLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       437 ~l~~L~~L~Ls~n~l~-~l-----p~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l  498 (1269)
                      +++.|+.|.+++|.+. +.     ...-..+..|..+.++++... +.....+..+++|+.+++-+++-
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            4555666666655322 11     112234456777777777543 33334456667777777776654

>KOG3665|consensus

Probab=97.07  E-value=0.00023  Score=88.63  Aligned_cols=141  Identities=29%  Similarity=0.286  Sum_probs=93.6

Q ss_pred             CCCCEEEccCCCCc--cCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670         167 QSLESLDLSMNSIW--TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL  244 (1269)
Q Consensus       167 ~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  244 (1269)
                      .+|++||+++...-  .-+...-..+|+|+.|.+++-.+.......+     ...+++|..||+|+.+++.+  ..++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l-----c~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL-----CASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH-----hhccCccceeecCCCCccCc--HHHhcc
Confidence            67999999886532  2333444568999999998876654432121     23478999999999999888  468899


Q ss_pred             CCCCEEEccCCCCcc-cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         245 SRLQELYLQGNILTF-LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       245 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      ++|+.|.+.+=.+.. ..-..+-+|++|+.||+|.......+.                  +....-..-..+|+|+.||
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~------------------ii~qYlec~~~LpeLrfLD  256 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK------------------IIEQYLECGMVLPELRFLD  256 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH------------------HHHHHHHhcccCccccEEe
Confidence            999999888766654 222346678999999998875443321                  0000011223477888888


Q ss_pred             CcCCCCCcc
Q psy5670         324 LSNNELTEE  332 (1269)
Q Consensus       324 L~~n~l~~~  332 (1269)
                      .+++.+...
T Consensus       257 cSgTdi~~~  265 (699)
T KOG3665|consen  257 CSGTDINEE  265 (699)
T ss_pred             cCCcchhHH
Confidence            888776653

>KOG3665|consensus

Probab=96.83  E-value=0.00056  Score=85.34  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=35.3

Q ss_pred             CCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCch--hhhcCCCCCc
Q psy5670         389 SLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLK  465 (1269)
Q Consensus       389 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~  465 (1269)
                      .+|+|++|.+++-.+.... .....++++|..||+++++++.+  ..++++++|+.|.+.+=.+..-.  ..+.++++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            3455555555544332221 11223444555555555444444  23444444444444443333221  1234455555


Q ss_pred             EEECCCC
Q psy5670         466 TLDLGDN  472 (1269)
Q Consensus       466 ~L~Ls~n  472 (1269)
                      .||+|..
T Consensus       224 vLDIS~~  230 (699)
T KOG3665|consen  224 VLDISRD  230 (699)
T ss_pred             eeecccc
Confidence            5555544

>TIGR00864 PCC polycystin cation channel protein

Probab=96.82  E-value=0.0008  Score=91.69  Aligned_cols=83  Identities=19%  Similarity=0.328  Sum_probs=57.3

Q ss_pred             EcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccc
Q psy5670         656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILL  735 (1269)
Q Consensus       656 dLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l  735 (1269)
                      ||++|+|+.|+...|.     ...+|..|+|++|||.|||++.||..|-..   +...+.....+.|..+.  ...+.++
T Consensus         1 DLSnN~LstLp~g~F~-----~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~---~~v~v~~~~~i~CasP~--~LrG~~L   70 (2740)
T TIGR00864         1 DISNNKISTIEEGICA-----NLCNLSEIDLSGNPFECDCGLARLPRWAEE---KGVKVRQPEAALCAGPG--ALAGQPL   70 (2740)
T ss_pred             CCCCCcCCccChHHhc-----cCCCceEEEeeCCccccccccHHHHHHHHh---cCccccCCcccCCCCCh--HHCCCCc
Confidence            4667777777766553     345677788889999999999999877441   11223344567897664  3566778


Q ss_pred             cccCCCccccccc
Q psy5670         736 KEAHSNQFLCEYE  748 (1269)
Q Consensus       736 ~~~~~~~~~~~~~  748 (1269)
                      .++...+|.|..+
T Consensus        71 ~~l~~~d~~C~~~   83 (2740)
T TIGR00864        71 LGIPLLDSGCDEE   83 (2740)
T ss_pred             ccCCcccCCCCCc
Confidence            8888888888743

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2123|consensus

Probab=96.39  E-value=0.0003  Score=73.91  Aligned_cols=84  Identities=29%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             CCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh--hhcCCCCCcEEEC
Q psy5670         392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDL  469 (1269)
Q Consensus       392 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L  469 (1269)
                      +.++|++.++.+.++.  ....++.|+.|.|+-|+|+.+.+  |..|++|++|+|..|.|.++.+  .+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444555555554442  23445556666666666665543  5667777777777777666653  4567777777777


Q ss_pred             CCCCCCccCh
Q psy5670         470 GDNLITEINN  479 (1269)
Q Consensus       470 s~n~i~~~~~  479 (1269)
                      ..|.-.+..+
T Consensus        96 ~ENPCc~~ag  105 (388)
T KOG2123|consen   96 DENPCCGEAG  105 (388)
T ss_pred             ccCCcccccc
Confidence            7776555433

>KOG2123|consensus

Probab=96.26  E-value=0.00045  Score=72.68  Aligned_cols=82  Identities=24%  Similarity=0.338  Sum_probs=53.8

Q ss_pred             CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhh-hhcCcccceEec
Q psy5670         828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRT-FLSLTHLKVLQL  906 (1269)
Q Consensus       828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~-f~~l~~L~~L~L  906 (1269)
                      +.+.|+.-++.|+.|.  ....++.|++|.|+-|+|+++.+  |..+++|++|||..|.|.++++-. +.++|+|++|-|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444555555555553  33456777777777777777765  667777777777777777776643 356777777777


Q ss_pred             cCcccee
Q psy5670         907 DHNRITS  913 (1269)
Q Consensus       907 ~~N~l~~  913 (1269)
                      ..|.=..
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            7765443

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.05  E-value=0.027  Score=53.92  Aligned_cols=111  Identities=22%  Similarity=0.359  Sum_probs=76.9

Q ss_pred             EEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhh----hh------
Q psy5670        1087 AFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKS----EW------ 1156 (1269)
Q Consensus      1087 afvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s----~w------ 1156 (1269)
                      +||.|+ +|..+... +...|++  .|+..-+-.....+|.++.|.+.+.++++.-.|+|+||+-+..    .+      
T Consensus         2 VFIvhg-~~~~~~~~-v~~~L~~--~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    2 VFIVHG-RDLAAAEA-VERFLEK--LGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             EEEEeC-CCHHHHHH-HHHHHHh--CCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            799999 88888754 8888884  5787777777779999999999999999999999999975522    11      


Q ss_pred             ---hHHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCcchH
Q psy5670        1157 ---CRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFW 1210 (1269)
Q Consensus      1157 ---~~~e~~~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~Fw 1210 (1269)
                         .-+|+-.++-++  .+.|++++.-+++   ++|..    +...+|++.++..=|
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v---~~PSD----l~Gi~~~~~~~~~~w  125 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGV---ELPSD----LSGITYIRFDDNRSW  125 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCc---cCCcc----cCCeEEEEcCCCCCC
Confidence               123444433322  3467777775544   33433    455567776655433

Their exact function has not, as yet, been defined.

>KOG1947|consensus

Probab=95.88  E-value=0.0019  Score=79.35  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=17.0

Q ss_pred             CCCCCEEEccCCC-Cccc-chhhhcCCCCCcEEEccC
Q psy5670         244 LSRLQELYLQGNI-LTFL-ADHALDGLNSLTVLNLSV  278 (1269)
Q Consensus       244 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~  278 (1269)
                      ++.|+.|.+.++. +... .......++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            4556666555543 2221 112344556666666655

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.73  E-value=0.011  Score=42.02  Aligned_cols=31  Identities=39%  Similarity=0.933  Sum_probs=27.0

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCc
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT  806 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~  806 (1269)
                      ||..|.|.      ...|+|++.+++.+ |.+||.+++
T Consensus         2 CP~~C~C~------~~~V~C~~~~L~~v-P~~iP~~t~   32 (33)
T smart00013        2 CPAPCNCS------GTAVDCSGRGLTEV-PLDLPPDTT   32 (33)
T ss_pred             cCCCCEEC------CCEeEeCCCCcCcc-CCCCCcccc
Confidence            89999996      56899999999988 999987754

>KOG2739|consensus

Probab=95.57  E-value=0.0088  Score=63.39  Aligned_cols=39  Identities=33%  Similarity=0.599  Sum_probs=18.3

Q ss_pred             CCCCcEEEccCCCCCCch--hhhcCCCCCcEEECCCCCCCc
Q psy5670         438 STSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       438 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      +++|++|++++|++..+.  ..+..+.+|.+|++.+|..+.
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            355555555555544321  123344455555555554443

>KOG2739|consensus

Probab=95.41  E-value=0.0084  Score=63.56  Aligned_cols=103  Identities=25%  Similarity=0.329  Sum_probs=60.0

Q ss_pred             CCCCcEEEccCCcccccccccccCCCCCcEEEccCC--cccccCcccccCCCCCCEEEccCCCCCccC-hhhhcCCCCCc
Q psy5670         366 LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN--KLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQ  442 (1269)
Q Consensus       366 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~  442 (1269)
                      +..|+.|.+.+..++.+..  |..+++|++|.++.|  ++.+-.......+++|++|++++|++..+. -..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3455555555555555432  556677777777777  444333333445577788888877776422 12345566777


Q ss_pred             EEEccCCCCCCchh----hhcCCCCCcEEECC
Q psy5670         443 DFHLNGNKLTEIPK----VLRNLHSLKTLDLG  470 (1269)
Q Consensus       443 ~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls  470 (1269)
                      .|++..|..+.+-.    .|.-+++|++|+-.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            88888777665432    34445566655543

>KOG1947|consensus

Probab=95.19  E-value=0.0045  Score=76.07  Aligned_cols=35  Identities=14%  Similarity=0.032  Sum_probs=17.3

Q ss_pred             CCCccEEEcCCCC-Cccc-CchhhcCCCCCcEEEccC
Q psy5670         342 LHRLVVLNIAYNK-MNKL-DSSIFKDLYRLQVLHLEN  376 (1269)
Q Consensus       342 l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~  376 (1269)
                      ++.|+.+.+..+. +... .......++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            5666666665542 2221 112234456666666655

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.47  E-value=0.028  Score=38.11  Aligned_cols=27  Identities=41%  Similarity=1.010  Sum_probs=21.1

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCC
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP  802 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p  802 (1269)
                      ||..|.|.      ...|+|++.+|+++ |..||
T Consensus         2 CP~~C~C~------~~~V~C~~~~L~~v-P~~lP   28 (28)
T PF01462_consen    2 CPRPCTCS------GLTVDCSGRGLTAV-PSDLP   28 (28)
T ss_dssp             SETTSEEE------TTEEEETTSS-SSS--STS-
T ss_pred             cCCCCEec------CCEeECCCCCCCcc-CCCCc
Confidence            89999996      67899999999988 88775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.93  E-value=0.026  Score=35.90  Aligned_cols=17  Identities=29%  Similarity=0.258  Sum_probs=8.1

Q ss_pred             cCeeecccccCcccChh
Q psy5670         877 LRELYLQYNKIIYISNR  893 (1269)
Q Consensus       877 L~~L~L~~N~l~~i~~~  893 (1269)
                      |++|+|++|+|+.||+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44445555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.59  E-value=0.046  Score=36.37  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=15.9

Q ss_pred             CcccCeeecccccCcccChhhhh
Q psy5670         874 LENLRELYLQYNKIIYISNRTFL  896 (1269)
Q Consensus       874 l~~L~~L~L~~N~l~~i~~~~f~  896 (1269)
                      |++|+.|+|++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35667777777777777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.59  E-value=0.046  Score=36.37  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=15.9

Q ss_pred             CcccCeeecccccCcccChhhhh
Q psy5670         874 LENLRELYLQYNKIIYISNRTFL  896 (1269)
Q Consensus       874 l~~L~~L~L~~N~l~~i~~~~f~  896 (1269)
                      |++|+.|+|++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35667777777777777777664

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=93.58  E-value=0.033  Score=44.24  Aligned_cols=50  Identities=30%  Similarity=0.600  Sum_probs=31.4

Q ss_pred             CccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccc
Q psy5670         689 NPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC  745 (1269)
Q Consensus       689 Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~  745 (1269)
                      |||.|||.+.|+..+...    ...+.+.+.+.|..+....   .++.++...+|.|
T Consensus         1 NP~~CdC~l~~~~~w~~~----~~~~~~~~~~~C~~P~~~~---~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQA----NEHLQDPVSLRCASPSSLR---GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHh----CCccCCCCCCEeCCcHHHH---hHHHcCCHhhCCC
Confidence            899999999999876431    2233455678897765422   2355555444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.11  E-value=0.038  Score=35.12  Aligned_cols=20  Identities=40%  Similarity=0.481  Sum_probs=11.5

Q ss_pred             CCEEeCCCCCCcccCcccccC
Q psy5670         853 LIILRLDDNRLTEIRGYEFER  873 (1269)
Q Consensus       853 L~~L~L~~N~l~~i~~~~f~~  873 (1269)
                      |++|||++|+|+.|++. |.+
T Consensus         2 L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TTT
T ss_pred             ccEEECCCCcCEeCChh-hcC
Confidence            55666666666655554 543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.19  E-value=0.099  Score=34.75  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=18.1

Q ss_pred             CCCCCEEeCCCCCCcccCccccc
Q psy5670         850 LKELIILRLDDNRLTEIRGYEFE  872 (1269)
Q Consensus       850 l~~L~~L~L~~N~l~~i~~~~f~  872 (1269)
                      |++|+.|+|++|+|+.+++.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45778888888888888887775

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.19  E-value=0.099  Score=34.75  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=18.1

Q ss_pred             CCCCCEEeCCCCCCcccCccccc
Q psy5670         850 LKELIILRLDDNRLTEIRGYEFE  872 (1269)
Q Consensus       850 l~~L~~L~L~~N~l~~i~~~~f~  872 (1269)
                      |++|+.|+|++|+|+.+++.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45778888888888888887775

>KOG4308|consensus

Probab=90.50  E-value=0.0051  Score=73.56  Aligned_cols=14  Identities=36%  Similarity=0.555  Sum_probs=7.6

Q ss_pred             CccEEEccCccccc
Q psy5670         627 SVENLFLTNNLISK  640 (1269)
Q Consensus       627 ~L~~L~Ls~N~i~~  640 (1269)
                      .++++.+++|.+..
T Consensus       291 ~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  291 QLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhcccCcccc
Confidence            45555555555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.40  E-value=0.15  Score=30.01  Aligned_cols=11  Identities=45%  Similarity=0.664  Sum_probs=3.0

Q ss_pred             cCeeecccccC
Q psy5670         877 LRELYLQYNKI  887 (1269)
Q Consensus       877 L~~L~L~~N~l  887 (1269)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.29  E-value=0.17  Score=29.88  Aligned_cols=17  Identities=41%  Similarity=0.724  Sum_probs=11.1

Q ss_pred             cccceEeccCccceeee
Q psy5670         899 THLKVLQLDHNRITSFA  915 (1269)
Q Consensus       899 ~~L~~L~L~~N~l~~~~  915 (1269)
                      ++|++|+|++|+|+.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47899999999988775

...

>KOG0473|consensus

Probab=90.27  E-value=0.015  Score=60.06  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeeccc-ccCCccE
Q psy5670         847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH-LSSQIQS  925 (1269)
Q Consensus       847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~  925 (1269)
                      .......+.||++.|++..+.. -|+-++.|..|+|+.|+|..++.+ |..+..+..+++.+|.++..|.++ ..+.+++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            3445566777777777777655 467777788888888888777654 456677777778888888777775 6777788


Q ss_pred             EEeeCCccc
Q psy5670         926 ITLTSNPWS  934 (1269)
Q Consensus       926 l~l~~Np~~  934 (1269)
                      +++-+|||.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            888888753

>KOG4308|consensus

Probab=88.85  E-value=0.013  Score=70.26  Aligned_cols=64  Identities=30%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             CCCCcEEECCCCCCCccCh----hhhhcccc-CCeeeccCCcCCCCCh----hhhcCC-CCCCEEEcCCCcccc
Q psy5670         461 LHSLKTLDLGDNLITEINN----LSLNSLHQ-LAGLRLTENNISNISK----GVFEKL-SVLTILNLASNKIQK  524 (1269)
Q Consensus       461 l~~L~~L~Ls~n~i~~~~~----~~~~~l~~-L~~L~Ls~n~l~~i~~----~~f~~l-~~L~~L~Ls~n~i~~  524 (1269)
                      ..++++|++++|.++...-    ..+...+. +.+|++..|.+.+...    ..+..+ ..++.++++.|.|+.
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            4556666666666553221    12223333 4445666665543311    112222 344555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1269
1o77_A	146	Crystal Structure Of The C713s Mutant Of The Tir Do		1e-20
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-20
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-12
1fyv_A	161	Crystal Structure Of The Tir Domain Of Human Tlr1 L		3e-20
1fyx_A	149	Crystal Structure Of P681h Mutant Of Tir Domain Of		1e-19
1fyw_A	149	Crystal Structure Of The Tir Domain Of Human Tlr2 L		1e-18
2j67_A	178	The Tir Domain Of Human Toll-Like Receptor 10 (Tlr1		5e-18
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-18
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-16
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-12
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-17
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-12
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-16
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		6e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-16
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-10
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-16
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-09
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-08
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-15
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-14
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-15
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-14
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-15
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-14
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-14
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-14
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-10
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		5e-14
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-13
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-13
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-13
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		6e-13
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-12
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-06
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-12
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-12
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-11
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		9e-12
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-12
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-11
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-11
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		9e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		1e-11
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		8e-06
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		1e-11
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-05
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-11
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-05
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-11
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		3e-11
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		6e-10
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-09
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-11
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		8e-11
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-10
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		9e-11
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		1e-10
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-10
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-07
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-10
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-07
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-10
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-10
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-07
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-10
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-10
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-10
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-09
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		6e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-06
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-08
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		7e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-08
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		3e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		6e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-08
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-08
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-08
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-08
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		9e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-08
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		9e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		4e-08
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		7e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		4e-08
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		9e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-07
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		2e-07
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		4e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		4e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		2e-07
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		4e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		6e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		7e-07
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		8e-07
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		7e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-06
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-06
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-06
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-06
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-04
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		3e-06
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		6e-05
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		4e-05
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		8e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-04
3ub4_A	146	S180l Variant Of Tir Domain Of MalTIRAP Length = 14		1e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		2e-04
3ub2_A	146	Tir Domain Of MalTIRAP Length = 146		2e-04
2y92_A	145	Crystal Structure Of Mal Adaptor Protein Length = 1		2e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		3e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		8e-04
3ub3_A	146	D96n Variant Of Tir Domain Of MalTIRAP Length = 146		7e-04

>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of Human Tlr2 Length = 146

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 1085 FDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTI 1144
            +DAFVSYS +D  +V   +   LEN +P +KLCLH R+F  G +I D I+ ++E S +T+
Sbjct: 3    YDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTV 62
Query: 1145 MVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYLKSNT 1200
             VLSENF+KSEW +YE   +H ++        +++L E  +K   P     +R  + + T
Sbjct: 63   FVLSENFVKSEWSKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKT 122
Query: 1201 YLQW 1204
            YL+W
Sbjct: 123  YLEW 126

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 26/202 (12%)
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXX 283
           + LDL +N   SLP++ F RL++L+ LYL  N L  L                       
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL----------------------- 76
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
            P  +F + ++L+ +++ +N +  L  G+F+ L  L  L L  N+L    +    F  L 
Sbjct: 77  -PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSLT 133
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
           +L  L++ YN++  L   +F  L  L+ L L NNQ++ +    F  L+ L TL + NN+L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 404 KRIESNSLDSLTALSVLSLDNN 425
           KR+   + DSL  L +L L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           LDL +N+L+   + +  F  L +L +L +  NK+  L + IFK+L  L+ L + +N++++
Sbjct: 42  LDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
           +    F  L NL  L +  N+LK +     DSLT L+ LSL  NEL+ + +      TSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 442 QDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
           ++  L  N+L  +P+     L  LKTL L +N +  +   + +SL +L  L+L EN
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
           C+C ++     N +DCS+      +P  IP D  +L L  N++  + S +F    KL++L
Sbjct: 12  CSCNNN----KNSVDCSSKKL-TAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
           +LN + ++T+    F  LK L  L + DN+L  +    F++L NL EL L  N++  +  
Sbjct: 67  YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126
Query: 893 RTFLSLTHLKVLQLDHNRITSF 914
           R F SLT L  L L +N + S 
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSL 148

>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1 Length = 161

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 13/152 (8%)
Query: 1076 IEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQ 1135
            +E   R+  F AF+SYS  D  +V  EL P LE      ++CLH R F  G  I + I+ 
Sbjct: 4    LEELQRNLQFHAFISYSGHDSFWVKNELLPNLE--KEGXQICLHERNFVPGKSIVENIIT 61
Query: 1136 AVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDPDIRL 1194
             +E S ++I VLS NF++SEWC YE   AHH +   G   LI+ILL  +PQ  + P    
Sbjct: 62   CIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSI-PSSYH 120
Query: 1195 YLKS----NTYLQWGDK-----LFWEKLKFAL 1217
             LKS     TYL+W  +     LFW  L+ A+
Sbjct: 121  KLKSLXARRTYLEWPKEKSKRGLFWANLRAAI 152

>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human Tlr2 Length = 149

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
            R+  +DAFVSYS +D  +V   +   LEN +P +KL LH R+F  G +I D I+ ++E S
Sbjct: 2    RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKS 61
Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYL 1196
             +T+ VLSENF+KSEW +YE   +H ++        +++L E  +K   P     +R  +
Sbjct: 62   HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIM 121
Query: 1197 KSNTYLQW 1204
             + TYL+W
Sbjct: 122  NTKTYLEW 129

>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2 Length = 149

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
            R+  +DAFVSYS +D  +V       LEN +P +KL LH R+F  G +I D I+ ++E S
Sbjct: 2    RNIXYDAFVSYSERDAYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIEKS 61
Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYL 1196
             +T+ VLSENF+KSEW +YE   +H ++        +++L E  +K   P     +R   
Sbjct: 62   HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIX 121
Query: 1197 KSNTYLQW 1204
             + TYL+W
Sbjct: 122  NTKTYLEW 129

>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10) Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 1077 EMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQA 1136
            E   R+  F AF+SYS  D  +V  EL P LE  D +  +CL+   F  G  I + IV  
Sbjct: 28   EQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSF 87
Query: 1137 VESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDP---DI 1192
            +E S ++I VLS NF+++EWC YEF  AHH +       +I+ILL  +P   +      +
Sbjct: 88   IEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKL 147
Query: 1193 RLYLKSNTYLQWGDK-----LFWEKLKFAL 1217
            +  L+   YL+W        LFW  L+ A+
Sbjct: 148  KALLEKKAYLEWPKDRRKCGLFWANLRAAI 177

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 33/281 (11%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
           L+E+ L  N ++ + PG FN L  L  L L +N L  + +    F+GL  L  L+I+ NK
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENK 115
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
           +  L   +F+DLY L+ L + +N +  I    F+ L++L  L +    L  I + +L  L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 415 TALSVLSLDNNELEYIEENALK---------------------------NSTSLQDFHLN 447
             L VL L +  +  I + + K                           N TSL   H N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 448 GNKLTEIPKV-LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
              LT +P + +R+L  L+ L+L  N I+ I    L+ L +L  ++L    ++ +    F
Sbjct: 236 ---LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
             L+ L +LN++ N++  +E   F +  NL  + LD N L 
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/410 (20%), Positives = 180/410 (43%), Gaps = 55/410 (13%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           ++L L  N+I++++++ FAS  +L  L ++ N +  +E  + ++L  L  L L +N L+ 
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 430 IEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
           I        ++L    ++ NK+   +  + ++L++LK+L++GDN +  I++ + + L+ L
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLT 547
             L L + N+++I       L  L +L L    I  +   +F     L  + +    YL 
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 548 DIGGLFPKLPNLVW-LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
            +       PN ++ LN++   +   +   +P                  Y  +   + L
Sbjct: 215 TMT------PNCLYGLNLTSLSITHCNLTAVP------------------YLAVRHLVYL 250
Query: 607 TYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
            + + S N ++ + G+ +     ++ + L    ++ V+PY F     L  +++ GN+L  
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWL--QSYSVNKERNKPNLVDLDTV-- 720
           + ++        S  N+    +  NP  CDC + W+  + + +N  R +P     + V  
Sbjct: 311 LEESVFH-----SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQG 365
Query: 721 ---------------TCK--LLYNRANPAILLKEAHSNQFLCEYETNCAP 753
                          TC+   + +R    + + E H+ QF+C  + +  P
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP 415

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C    S +   + C    +   +P  IP +   L L  NRI  +    F     
Sbjct: 3   CPPRCEC----SAQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 829 LQILFLNSSHVETIHNKTFN------------------------GLKELIILRLDDNRLT 864
           L+ L LN + V  +    FN                        GL  L  L + +N++ 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS 920
            +  Y F+ L NL+ L +  N ++YIS+R F  L  L+ L L+   +TS     LS
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           KEV  Q  S++ +  GI     +L   DL +  L    ++ ATF GL +L  LN+ YN++
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLAT--LSDATFRGLTKLTWLNLDYNQL 71
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L + +F DL  L  L L NNQ+ S+    F  L+ L  L +  N+LK + S   D LT
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL 469
            L  L L+ N+L+ I   A    T+LQ   L+ N+L  +P      L  L+T+ L
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           L L++  + ++   TF  L+ L  L +  N+L+ + +   D LT L  L L NN+L  + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGL 491
                + T L   +L GN+L  +P  +                        + L +L  L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGV-----------------------FDRLTKLKEL 136
Query: 492 RLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           RL  N + +I  G F+KL+ L  L+L++N++Q V  G FD    L  I L GN
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI 824
           CE      CTC          +DC     D+ +P  IP D  +L L    +  +   +F 
Sbjct: 4   CETV--TGCTCNEG----KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFR 56
Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
           G  KL  L L+ + ++T+    F+ L EL  L L +N+L  +    F+ L  L +LYL  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
           N++  + +  F  LT LK L+L+ N++ S         + +Q+++L++N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           KEV  Q  S++ +  GI     +L   DL +  L    ++ ATF GL +L  LN+ YN++
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLAT--LSDATFRGLTKLTWLNLDYNQL 71
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L + +F DL  L  L L NNQ+ S+    F  L+ L  L +  N+LK + S   D LT
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL 469
            L  L L+ N+L+ I   A    T+LQ   L+ N+L  +P      L  L+T+ L
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           L L++  + ++   TF  L+ L  L +  N+L+ + +   D LT L  L L NN+L  + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGL 491
                + T L   +L GN+L  +P  +                        + L +L  L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGV-----------------------FDRLTKLKEL 136
Query: 492 RLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           RL  N + +I  G F+KL+ L  L+L++N++Q V  G FD    L  I L GN
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 772 NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQI 831
            CTC          +DC     D+ +P  IP D  +L L    +  +   +F G  KL  
Sbjct: 9   GCTCNEG----KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 832 LFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS 891
           L L+ + ++T+    F+ L EL  L L +N+L  +    F+ L  L +LYL  N++  + 
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 892 NRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
           +  F  LT LK L+L+ N++ S         + +Q+++L++N
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSN 392
           V AA+F     L +L +  N + ++D++ F  L  L+ L L +N Q+ S+   TF  L  
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
           LHTL +    L+ +       L AL  L L +N L+ + ++  ++  +L    L+GN+++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 453 EIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
            +P +  R LHSL  L L  N +  ++  +   L +L  L L  NN+S +       L  
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 512 LTILNLASN 520
           L  L L  N
Sbjct: 227 LQYLRLNDN 235

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELE 428
           Q + L  N+I  +   +F +  NL  L + +N L RI++ +   L  L  L L DN +L 
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
            ++         L   HL+   L E+ P + R L +L+ L L DN +  + + +   L  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
           L  L L  N IS++ +  F  L  L  L L  N++  V    F +   L+ + L  N L+
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 548 DI--GGLFPKLPNLVWLNISEN 567
            +    L P L  L +L +++N
Sbjct: 215 ALPTEALAP-LRALQYLRLNDN 235

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
           L+LD   +  +G   F G   LQ L+L  + ++ + + TF  L  L  L L  NR++ + 
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
              F  L +L  L L  N++ ++    F  L  L  L L  N +++     L+    +Q 
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
           + L  NPW CDC        +LQ+ R S  ++
Sbjct: 230 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 260

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSN 392
           V AA+F     L +L +  N + ++D++ F  L  L+ L L +N Q+ S+   TF  L  
Sbjct: 46  VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
           LHTL +    L+ +       L AL  L L +N L+ + ++  ++  +L    L+GN+++
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 453 EIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
            +P +  R LHSL  L L  N +  ++  +   L +L  L L  NN+S +       L  
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 512 LTILNLASN 520
           L  L L  N
Sbjct: 226 LQYLRLNDN 234

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELE 428
           Q + L  N+I  +   +F +  NL  L + +N L RI++ +   L  L  L L DN +L 
Sbjct: 34  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
            ++         L   HL+   L E+ P + R L +L+ L L DN +  + + +   L  
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
           L  L L  N IS++ +  F  L  L  L L  N++  V    F +   L+ + L  N L+
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 548 DI--GGLFPKLPNLVWLNISEN 567
            +    L P L  L +L +++N
Sbjct: 214 ALPTEALAP-LRALQYLRLNDN 234

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
           L+LD   +  +G   F G   LQ L+L  + ++ + + TF  L  L  L L  NR++ + 
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
              F  L +L  L L  N++ ++    F  L  L  L L  N +++     L+    +Q 
Sbjct: 169 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 228
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
           + L  NPW CDC        +LQ+ R S  ++
Sbjct: 229 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 259

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLS 391
           +V AA+F     L +L +  N +  +D++ F  L  L+ L L +N Q+  +   TF  L 
Sbjct: 45  YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
           +LHTL +    L+ +       L AL  L L +N L+ + +N  ++  +L    L+GN++
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 452 TEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
             +P+   R LHSL  L L  N +  ++  +   L +L  L L  NN+S +   V   L 
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 511 VLTILNLASN 520
            L  L L  N
Sbjct: 225 SLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C CY++     +   C   G    +P  IP  +  ++L GNRI  V + SF   + 
Sbjct: 1   CPGACVCYNEPKVTTS---CPQQGL-QAVPTGIPASSQRIFLHGNRISYVPAASFQSCRN 56
Query: 829 LQILFLNS-------------------------SHVETIHNKTFNGLKELIILRLDDNRL 863
           L IL+L+S                         + +  +   TF GL  L  L LD   L
Sbjct: 57  LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
            E+    F  L  L+ LYLQ N +  + + TF  L +L  L L  NRI S
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
           L+LD   +  +G   F G   LQ L+L  ++++ + + TF  L  L  L L  NR+  + 
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
            + F  L +L  L L  N +  +    F  L  L  L L  N ++      L     +Q 
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
           + L  NPW CDC        +LQ+ R S  ++
Sbjct: 229 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 259

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 60/284 (21%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
           + L+L  NK++ +    F N        NL  L L NN    +    F+ L +L+ LYL 
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
            N L  L +                              + L+E+ +  N I  +   +F
Sbjct: 109 KNQLKELPE---------------------------KMPKTLQELRVHENEITKVRKSVF 141
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
           N L Q+IV++L  N L    +    F G+ +L  + IA                      
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA---------------------- 179
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
             +  I +I +    SL+ LH   +  NK+ ++++ SL  L  L+ L L  N +  ++  
Sbjct: 180 --DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
           +L N+  L++ HLN NKL ++P  L +   ++ + L +N I+ I
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
           +LDL NN++TE  +    F  L  L  L +  NK++K+    F  L +L+ L+L  NQ++
Sbjct: 56  LLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNS 438
            +      +L  L    +  N++ ++  +  + L  + V+ L  N L+   IE  A +  
Sbjct: 114 ELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
             L    +    +T IP+ L    SL  L L  N IT+++  SL  L+ LA L L+ N+I
Sbjct: 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           S +  G       L  L+L +NK+ KV  G  D+   +  + L  N ++ IG
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIG 279

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
            CP  C C+        V+ CS  G + ++P  +P D   L L  N+I  +    F   K
Sbjct: 24  VCPFRCQCH------LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 76
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELYLQYNK 886
            L  L L ++ +  I    F  L +L  L L  N+L E+     E++ + L+EL +  N+
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENE 132
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
           I  +    F  L  + V++L  N + S  +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 60/284 (21%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
           + L+L  NK++ +    F N        NL  L L NN    +    F+ L +L+ LYL 
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
            N L  L +                              + L+E+ +  N I  +   +F
Sbjct: 109 KNQLKELPE---------------------------KMPKTLQELRVHENEITKVRKSVF 141
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
           N L Q+IV++L  N L    +    F G+ +L  + IA                      
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA---------------------- 179
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
             +  I +I +    SL+ LH   +  NK+ ++++ SL  L  L+ L L  N +  ++  
Sbjct: 180 --DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
           +L N+  L++ HLN NKL ++P  L +   ++ + L +N I+ I
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
           +LDL NN++TE  +    F  L  L  L +  NK++K+    F  L +L+ L+L  NQ++
Sbjct: 56  LLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNS 438
            +      +L  L    +  N++ ++  +  + L  + V+ L  N L+   IE  A +  
Sbjct: 114 ELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
             L    +    +T IP+ L    SL  L L  N IT+++  SL  L+ LA L L+ N+I
Sbjct: 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           S +  G       L  L+L +NK+ KV  G  D+   +  + L  N ++ IG
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIG 279

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
            CP  C C+        V+ CS  G + ++P  +P D   L L  N+I  +    F   K
Sbjct: 24  VCPFRCQCH------LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 76
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELYLQYNK 886
            L  L L ++ +  I    F  L +L  L L  N+L E+     E++ + L+EL +  N+
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENE 132
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
           I  +    F  L  + V++L  N + S  +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          +DC +  + + +P  IP +A  LYL  N+I  +    F     
Sbjct: 13  CPSQCSC------SGTTVDCRSKRHAS-VPAGIPTNAQILYLHDNQITKLEPGVFDSLIN 65
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L+ L+L S+ +  +    F+ L +L +L L  N+LT +    F+RL +L+EL++  NK+ 
Sbjct: 66  LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
            +  R    LTHL  L LD N++ S     +   S +    L  NPW C+C      R++
Sbjct: 126 ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184
Query: 947 L 947
           +
Sbjct: 185 V 185

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          ++C + G  + +P  IP   T L L+ N +  + +  F     
Sbjct: 1   CPSRCSC------SGTTVECYSQGRTS-VPTGIPAQTTYLDLETNSLKSLPNGVFDELTS 53
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L  L+L  + ++++ N  FN L  L  L L  N+L  +    F++L  L+EL L  N++ 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
            + +  F  LT LK L+L  N++ S    V+   + +Q I L  NPW C C       ++
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 173
Query: 947 LQRSRSSVHD 956
           + +    V +
Sbjct: 174 INKHSGVVRN 183

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C      E   +DC+  G   ++P  IP+  TEL L+ N +  + S    GR  
Sbjct: 2   CPAMCHC------EGTTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGR-- 52
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
                                L  L+ L L  N+LT I    FE   +++EL L  NKI 
Sbjct: 53  ---------------------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKFRD 945
            ISN+ FL L  LK L L  N+I+     +  HL+S + S+ L SNP++C+C     F +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFNCNCHLA-WFAE 149
Query: 946 YLQRSRSSVHDISQIRCMTGSEV 968
           +L   R    +    RC   S+V
Sbjct: 150 WL---RKKSLNGGAARCGAPSKV 169

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 4/203 (1%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
           +LN+  N++  +  + FK L  L++L L  N I +I    F  L+NL+TL + +N+L  I
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG-NKLTEIPK-VLRNLHSL 464
            + +   L+ L  L L NN +E I   A     SL+   L    +L+ I +     L +L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
           + L+L    + EI NL+   L +L  L L+ N++S I  G F+ L  L  L +  ++IQ 
Sbjct: 188 RYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 525 VEAGTFDNNSNLVAIRLDGNYLT 547
           +E   FDN  +LV I L  N LT
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT 268

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           TCP+ C+C +  S     + C       ++P  I  +   L L  N+I ++  +SF   +
Sbjct: 34  TCPSVCSCSNQFS----KVICVRKNL-REVPDGISTNTRLLNLHENQIQIIKVNSFKHLR 88
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L+IL L+ +H+ TI    FNGL  L  L L DNRLT I    F  L  L+EL+L+ N I
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF 914
             I +  F  +  L+ L L   +  S+
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSY 175

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
           KL  L L+ +H+  I   +F GL  L  L +  +++  I    F+ L++L E+ L +N +
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDF 939
             + +  F  L HL+ + L H                      NPW+C+CD 
Sbjct: 268 TLLPHDLFTPLHHLERIHLHH----------------------NPWNCNCDI 297

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
           + CP  C C      E   +DCS     N++P  IP    EL L+ N   V+ +     +
Sbjct: 3   LACPEKCRC------EGTTVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKK 55
Query: 827 -KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
             +L+ +  +++ +  I    F G   +  + L  NRL  ++   F+ LE+L+ L L+ N
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKF 943
           +I  + N +F+ L+ +++L L  N+IT+ A     +   + ++ L +NP++C+C +    
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC-YLAWL 174
Query: 944 RDYLQRSR 951
            ++L++ R
Sbjct: 175 GEWLRKKR 182

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
           + CP  CTC +      N++DC   G   ++P  +P   TE+ L+ N I V+   +F   
Sbjct: 3   LHCPAACTCSN------NIVDCRGKGL-TEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
           KKL+ + L+++ +  +    F GL+ L  L L  N++TE+    FE L +L+ L L  NK
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFR 944
           I  +    F  L +L +L L  N++ + A    S    IQ++ L  NP+ CDC   +   
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-KWLA 174
Query: 945 DYLQRSRSSVHDISQIRCMT 964
           DYL    ++  + S  RC +
Sbjct: 175 DYLH---TNPIETSGARCTS 191

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 18/278 (6%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           LDLS+  +    +N+  F  L  L VLN+AYNK+NK+    F  L  LQVL+L  N +  
Sbjct: 271 LDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
           ++ + F  L  +  + +  N +  I+  +   L  L  L L +N L  I         S+
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSI 383
Query: 442 QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISN 500
            D  L+GNKL  +PK+  NL +   + L +N +  ++ L  L  +  L  L L +N  S+
Sbjct: 384 PDIFLSGNKLVTLPKI--NL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 501 ISKG-VFEKLSVLTILNLASNKIQ-----KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLF 553
            S      +   L  L L  N +Q     ++    F+  S+L  + L+ NYL  +  G+F
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500
Query: 554 PKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQI 591
             L  L  L+++ N L    +  +PA+L+ LDI  NQ+
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1068 RLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILE---NGDPAYKLCLHYREFP 1124
            RL +K      +     +DA++ +SSKD  +V   L   L+   +    + LC   R+F 
Sbjct: 654  RLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFV 713
Query: 1125 VGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEV 1183
             G      I  A+ +SR+ + ++S +F++  WC   F  A  + L      LI++++G +
Sbjct: 714  PGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSL 773
Query: 1184 PQKDL--DPDIRLYLKSNTYLQW 1204
             Q  L     IR +++   YL+W
Sbjct: 774  SQYQLMKHQSIRGFVQKQQYLRW 796

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
           + CP  CTC +      N++DC   G   ++P  +P   TE+ L+ N I V+   +F   
Sbjct: 3   LHCPAACTCSN------NIVDCRGKGL-TEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
           KKL+ + L+++ +  +    F GL+ L  L L  N++TE+    FE L +L+ L L  NK
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFR 944
           I  +    F  L +L +L L  N++ + A    S    IQ++ L  NP+ CDC   +   
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-KWLA 174
Query: 945 DYLQRSRSSVHDISQIRCMT 964
           DYL    ++  + S  RC +
Sbjct: 175 DYLH---TNPIETSGARCTS 191

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 40/262 (15%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
           + L+L  N +S +    F          +L  L L NN    +  + FS L +LQ+LY+ 
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQ------HLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
            N L                          IPP L      L E+ + +N I  +  G+F
Sbjct: 111 KNHLV------------------------EIPPNL---PSSLVELRIHDNRIRKVPKGVF 143
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR-LQVL 372
           + L  +  +++  N L         F GL +L  L I+  K+    + I KDL   L  L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL----TGIPKDLPETLNEL 198
Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432
           HL++N+I++I        S L+ L + +N+++ IE+ SL  L  L  L LDNN+L  +  
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 433 NALKNSTSLQDFHLNGNKLTEI 454
             L +   LQ  +L+ N +T++
Sbjct: 259 -GLPDLKLLQVVYLHTNNITKV 279

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 18/251 (7%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
           +P E+   S D   + LQNN I+ L    F  L  L  L L NN++++  ++   FS L 
Sbjct: 48  VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPLR 102
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
           +L  L I+ N + ++  ++   L  L++    +N+I  + +  F+ L N++ + M  N L
Sbjct: 103 KLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Query: 404 KR--IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLR 459
           +    E  + D L  L+ L +   +L  I ++      +L + HL+ NK+   E+  +LR
Sbjct: 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLR 215
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
               L  L LG N I  I N SL+ L  L  L L  N +S +  G+ + L +L ++ L +
Sbjct: 216 -YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHT 273
Query: 520 NKIQKVEAGTF 530
           N I KV    F
Sbjct: 274 NNITKVGVNDF 284

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 28/218 (12%)
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
           +L L+NN I  + ++ F  L +L+ L++ NNK+ +I   +   L  L  L +  N L  I
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 431 EENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLI-------TEINNLSL 482
             N     +SL +  ++ N++ ++PK V   L ++  +++G N +          + L L
Sbjct: 118 PPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 483 NSLH----QLAG-----------LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527
           N L     +L G           L L  N I  I      + S L  L L  N+I+ +E 
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 528 GTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLN 563
           G+      L  + LD N L+ +    P  KL  +V+L+
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           L L  N+IS + K  F+ L  L  L L +NKI K+    F     L  + +  N+L +I 
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 551 GLFPKLP-NLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLT 607
              P LP +LV L I +N +      +     ++  +++ GN +   G        L+L 
Sbjct: 119 ---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
           Y   S  KLT +  + +P ++  L L +N I  ++         L R+ L  N+++ I  
Sbjct: 176 YLRISEAKLTGIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 668 TALRISP 674
            +L   P
Sbjct: 235 GSLSFLP 241

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C+        V+ CS  G    +P  I  D T L L  N I  +    F G + 
Sbjct: 27  CPFGCHCH------LRVVQCSDLGL-KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 79
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L  L L ++ +  IH K F+ L++L  L +  N L EI         +L EL +  N+I 
Sbjct: 80  LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI---PPNLPSSLVELRIHDNRIR 136
Query: 889 YISNRTFLSLTHLKVLQLDHN 909
            +    F  L ++  +++  N
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGN 157

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  CTC         V+ CS  G    LP  IP D TELYLDGN+              
Sbjct: 4   CPTECTCLD------TVVRCSNKGL-KVLPKGIPRDVTELYLDGNQF------------- 43
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
                       T+  K  +  K L ++ L +NR++ +    F  +  L  L L YN++ 
Sbjct: 44  ------------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
            I  RTF  L  L++L L  N I+      ++  S +  + + +NP  CDC+  +   D+
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM-QWLSDW 150
Query: 947 LQRSRSSVHDISQIRCMTGSEVGFTIMRTV 976
           +   +S   +    RC    E+   ++ T 
Sbjct: 151 V---KSEYKEPGIARCAGPGEMADKLLLTT 177

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 5/223 (2%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           LN+  N +  + +  FK L  L++L L  N +  I    F  L +L+TL + +N+L  + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLK 465
           + + + L+ L  L L NN +E I   A     SL+   L   K  E         L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
            L+LG   + +I NL+  +L +L  L L+ N +  I  G F+ L+ L  L L   ++  +
Sbjct: 160 YLNLGMCNLKDIPNLT--ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISEN 567
           E   FD+  +L  + L  N L  +   LF  L  L  ++++ N
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           +CP  C+C    S +A+ + C+      ++P  IP++   L L  N I V+ + +F   +
Sbjct: 5   SCPAACSC----SNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTDTFKHLR 59
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L+IL L+ + V  I    FNGL  L  L L DNRLT +    FE L  LREL+L+ N I
Sbjct: 60  HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 888 IYISNRTFLSLTHLKVLQL 906
             I +  F  +  L+ L L
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          I C++ G  + +P  IP  AT L L+ N++             
Sbjct: 1   CPSRCSC------SGTEIRCNSKGLTS-VPTGIPSSATRLELESNKL------------- 40
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
                      +++ +  F+ L +L  L L  N++  +    F++L  L  LYL  NK+ 
Sbjct: 41  -----------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
            + N  F  LT LK L LD N++ S    ++   + +Q I L +NPW C C       DY
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DY 145
Query: 947 LQR--SRSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
           L R  +++S  +    +C   S  G  +   + P+
Sbjct: 146 LSRWLNKNSQKEQGSAKC---SGSGKPVRSIICPT 177

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 14/245 (5%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           LN+  N +  + +  FK L  L++L L  N +  I    F  L +L+TL + +N+L  + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLK 465
           + + + L+ L  L L NN +E I   A     SL+   L   K  E         L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
            L+LG   + +I NL+  +L +L  L L+ N +  I  G F+ L+ L  L L   ++  +
Sbjct: 160 YLNLGMCNLKDIPNLT--ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISEN---------LLEWFDYA 575
           E   FD+  +L  + L  N L  +   LF  L  L  ++++ N          L W+   
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 576 LIPAD 580
            +P++
Sbjct: 278 TVPSN 282

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           +CP  C+C    S +A+ + C+      ++P  IP++   L L  N I V+ + +F   +
Sbjct: 5   SCPAACSC----SNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTDTFKHLR 59
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L+IL L+ + V  I    FNGL  L  L L DNRLT +    FE L  LREL+L+ N I
Sbjct: 60  HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 888 IYISNRTFLSLTHLKVLQL 906
             I +  F  +  L+ L L
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ + 
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
             +   L++L  L      L  +E   + +  +L++ ++  N +   ++P+   NL +L+
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
            LDL  N I  I    L  LHQ+  L L+ +     ++ I  G F+++  L  L L +N+
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 212
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
           ++ V  G FD  ++L  I L  N
Sbjct: 213 LKSVPDGIFDRLTSLQKIWLHTN 235

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 22  KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 81
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 82  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 916 V 916
           +
Sbjct: 142 L 142

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ + 
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
             +   L++L  L      L  +E   + +  +L++ ++  N +   ++P+   NL +L+
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
            LDL  N I  I    L  LHQ+  L L+ +     ++ I  G F+++  L  L L +N+
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 213
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
           ++ V  G FD  ++L  I L  N
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN 236

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 23  KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 83  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 916 V 916
           +
Sbjct: 143 L 143

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
             +   L++L  L      L  +E   + +  +L++ ++  N +   ++P+   NL +L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
            LDL  N I  I    L  LHQ+  L L+ +     ++ I  G F+++  L  L L +N+
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 211
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
           ++ V  G FD  ++L  I L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 916 V 916
           +
Sbjct: 141 L 141

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ + 
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
             +   L++L  L      L  +E   + +  +L++ ++  N +   ++P+   NL +L+
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
            LDL  N I  I    L  LHQ+  L L+ +     ++ I  G F+++  L  L L +N+
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 212
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
           ++ V  G FD  ++L  I L  N
Sbjct: 213 LKSVPDGIFDRLTSLQKIWLHTN 235

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 22  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 81
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 82  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 916 V 916
           +
Sbjct: 142 L 142

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ + 
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
             +   L++L  L      L  +E   + +  +L++ ++  N +   ++P+   NL +L+
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
            LDL  N I  I    L  LHQ+  L L+ +     ++ I  G F+++  L  L L +N+
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 213
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
           ++ V  G FD  ++L  I L  N
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN 236

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 23  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 83  LILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 916 V 916
           +
Sbjct: 143 L 143

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 6/223 (2%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           L  N+I ++    F  L  L VL L  N + +  +    F+GL  L  L +  N +  + 
Sbjct: 82  LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALS 418
           S  F+ L +L+ L L NN IESI    F  + +L  L +    KL+ I   + + L  L 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEI 477
            L+L    ++ +    L     L++  ++GN   EI P     L SLK L + ++ ++ I
Sbjct: 200 YLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
              + + L  L  L L  NN+S++   +F  L  L  L+L  N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 124/259 (47%), Gaps = 16/259 (6%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
           L+E+P+ + +  + + L+L +N I  I   +   LH L  L+L  N+I  I  G F  L+
Sbjct: 66  LSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISE-NL 568
            L  L L  N +  + +G F+  S L  + L  N +  I    F ++P+L+ L++ E   
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 569 LEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP- 625
           LE+          +L++L++    I ++ N   +   + L   + S N   E+   +   
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 626 -HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDF 684
             S++ L++ N+ +S ++   F    +L  ++L  N L ++       +PL   + + + 
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--TPL---RYLVEL 295
Query: 685 YIGENPFQCDCNMQWLQSY 703
           ++  NP+ CDC++ WL  +
Sbjct: 296 HLHHNPWNCDCDILWLAWW 314

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C +  S     + C+  G  +++P  IP +   L L  N I ++ + +F     
Sbjct: 46  CPSVCSCSNQFS----KVVCTRRGL-SEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHH 100
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L++L L  + +  I    FNGL  L  L L DN LT I    FE L  LREL+L+ N I 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 889 YISNRTFLSLTHLKVLQL 906
            I +  F  +  L  L L
Sbjct: 161 SIPSYAFNRVPSLMRLDL 178

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           L+++  +I +N+ +K ++   +  L  +  L+L  N+L  I  +ALK  T+L    L GN
Sbjct: 40  LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95
Query: 450 KLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
           +L  +P  V   L +LK L L +N +  + +   + L  L  L L  N + ++ KGVF+K
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDK 155
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWL 562
           L+ LT L+L +N++Q +  G FD  + L  + L+ N L  +  G+F +L +L  +WL
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 34/159 (21%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQ---ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
           L L GN++     H     K+L     L L  + ++++ N  F+ L  L  L L +N+L 
Sbjct: 68  LALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQ 922
            +    F++L NL  LYL +N++  +    F  LT+L  L LD+N++ S    V+   +Q
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 923 IQSITLT------------------------SNPWSCDC 937
           ++ ++L                         +NPW C C
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCAC 221

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 155/362 (42%), Gaps = 68/362 (18%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           K V  +N+++  L   + +   Q+ +L+L  N+L  E ++   F+  H +  L + +N +
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L   +F+++  L VL LE N + S+ R  F +   L TL MSNN L+RIE ++  + T
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
           +L  L L +N L +++                   L+ IP +    H+            
Sbjct: 172 SLQNLQLSSNRLTHVD-------------------LSLIPSL---FHA------------ 197
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
              N+S N L  LA           I   V E       L+ + N I  V       N  
Sbjct: 198 ---NVSYNLLSTLA-----------IPIAVEE-------LDASHNSINVVRGPV---NVE 233
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA--LIPADLQWLDIHGNQISE 593
           L  ++L  N LTD   L    P LV +++S N LE   Y   +    L+ L I  N++  
Sbjct: 234 LTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPN 651
           L  Y +    L++   D S N L  +  N  P    +ENL+L +N I  ++  T     N
Sbjct: 293 LNLYGQPIPTLKV--LDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKN 349
Query: 652 LT 653
           LT
Sbjct: 350 LT 351

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 35/291 (12%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
           +L+N   +   N+ ++++ +  LDS   + +L+L++ ++E I+  A   + ++Q  ++  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
           N +  +P      H  + + L                  L  L L  N++S++ +G+F  
Sbjct: 109 NAIRYLPP-----HVFQNVPL------------------LTVLVLERNDLSSLPRGIFHN 145
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
              LT L++++N ++++E  TF   ++L  ++L  N LT +      +P+L   N+S NL
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV 628
           L       IP  ++ LD   N I+ +     +E    LT      N LT+         +
Sbjct: 204 LSTL---AIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWLLNYPGL 256
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
             + L+ N + K+  + F     L R+ +  NRL  +N   L   P+P+ K
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLK 304

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 68/362 (18%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           K V  +N+++  L   + +   Q+ +L+L  N+L  E ++   F+  H +  L + +N +
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L   +F+++  L VL LE N + S+ R  F +   L TL MSNN L+RIE ++  + T
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
           +L  L L +N L +++                   L+ IP +                  
Sbjct: 166 SLQNLQLSSNRLTHVD-------------------LSLIPSLFH---------------- 190
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
              N+S N L  LA           I   V E       L+ + N I  V       N  
Sbjct: 191 --ANVSYNLLSTLA-----------IPIAVEE-------LDASHNSINVVRGPV---NVE 227
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA--LIPADLQWLDIHGNQISE 593
           L  ++L  N LTD   L    P LV +++S N LE   Y   +    L+ L I  N++  
Sbjct: 228 LTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPN 651
           L  Y +    L++   D S N L  +  N  P    +ENL+L +N I  ++  T     N
Sbjct: 287 LNLYGQPIPTLKV--LDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKN 343
Query: 652 LT 653
           LT
Sbjct: 344 LT 345

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 35/291 (12%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
           +L+N   +   N+ ++++ +  LDS   + +L+L++ ++E I+  A   + ++Q  ++  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
           N +  +P      H  + + L                  L  L L  N++S++ +G+F  
Sbjct: 103 NAIRYLPP-----HVFQNVPL------------------LTVLVLERNDLSSLPRGIFHN 139
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
              LT L++++N ++++E  TF   ++L  ++L  N LT +      +P+L   N+S NL
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV 628
           L       IP  ++ LD   N I+ +     +E    LT      N LT+         +
Sbjct: 198 LSTL---AIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWLLNYPGL 250
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
             + L+ N + K+  + F     L R+ +  NRL  +N   L   P+P+ K
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLK 298

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 186/441 (42%), Gaps = 48/441 (10%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
           S+  L+L+ ++LS  +  +F          NL +LDLS N+ + +  + F+ L +L+  +
Sbjct: 233 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
           L+ N +  L  H+L G                         I    F   + L+ + +++
Sbjct: 289 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 348
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDS 360
           N I  +   +F  L  L  L LSN+  +   +   TF  L    L +LN+  NK++K++S
Sbjct: 349 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 408
Query: 361 SIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
             F  L  L+VL L  N+I + +    +  L N+  + +S NK  ++  NS   + +L  
Sbjct: 409 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 468
Query: 420 LSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
           L L    L+ ++ +      L+N T L D   N         +L  L  L+ LDL  N +
Sbjct: 469 LMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQHNNL 526
Query: 475 TEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
             +   +        L  L  L  L L  N    I   VF+ L  L I++L  N +  + 
Sbjct: 527 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 586
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDYALI 577
           A  F+N  +L ++ L  N +T +      P   NL  L++  N  +       WF     
Sbjct: 587 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF----- 641
Query: 578 PADLQWLDIHGNQISELGNYF 598
              + W++     I EL +++
Sbjct: 642 ---VNWINETHTNIPELSSHY 659

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 150/640 (23%), Positives = 250/640 (39%), Gaps = 139/640 (21%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSFD 234
           ++ LNLT N+L  +   +F+ Y    +   G N               L+VL+L +N   
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 235 SLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXXX 273
            L  + F+  + L EL+L               Q N++T       L+   L        
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 274 XXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
                     I        ++F  S  LK++ L +N I   +PG F+ + +L  L L+N 
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 215
Query: 328 EL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLDS 360
           +L    TE    E  N +                 TF GL    L +L+++YN +N + +
Sbjct: 216 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNSL 411
             F  L +L+   LE N I+ +  ++   L N+  L +  +          L +I+  S 
Sbjct: 276 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 335
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
             L  L  L++++N++  I+ N      +L+   L  N  T          SL+TL   +
Sbjct: 336 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-NE 383
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGTF 530
             ++    L+ + LH L    LT+N IS I    F  L  L +L+L  N+I Q++    +
Sbjct: 384 TFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 531 DNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWLD 585
               N+  I L  N YL      F  +P+L  L +    L+  D +  P     +L  LD
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 586 IHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLTN 635
           +  N I+ + +   +E   +L   D   N L  L  +A P            +  L L +
Sbjct: 497 LSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL-------------- 675
           N   ++    F     L  +DL  N L  +      NQ +L+   L              
Sbjct: 556 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 615
Query: 676 PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
           P+ +N+ +  +  NPF C C ++ W  ++      N P L
Sbjct: 616 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 655

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
           CT  H+V+      DCS      Q+P  +P + T L L  N++  + + +F    +L  L
Sbjct: 12  CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 64
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
            +  + +  +  +    L  L +L L  N L+++    F    NL EL+L  N I  I N
Sbjct: 65  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 124
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
             F+   +L  L L HN ++S
Sbjct: 125 NPFVKQKNLITLDLSHNGLSS 145

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 186/441 (42%), Gaps = 48/441 (10%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
           S+  L+L+ ++LS  +  +F          NL +LDLS N+ + +  + F+ L +L+  +
Sbjct: 228 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
           L+ N +  L  H+L G                         I    F   + L+ + +++
Sbjct: 284 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 343
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDS 360
           N I  +   +F  L  L  L LSN+  +   +   TF  L    L +LN+  NK++K++S
Sbjct: 344 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 403
Query: 361 SIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
             F  L  L+VL L  N+I + +    +  L N+  + +S NK  ++  NS   + +L  
Sbjct: 404 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 463
Query: 420 LSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
           L L    L+ ++ +      L+N T L D   N         +L  L  L+ LDL  N +
Sbjct: 464 LMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQHNNL 521
Query: 475 TEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
             +   +        L  L  L  L L  N    I   VF+ L  L I++L  N +  + 
Sbjct: 522 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 581
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDYALI 577
           A  F+N  +L ++ L  N +T +      P   NL  L++  N  +       WF     
Sbjct: 582 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF----- 636
Query: 578 PADLQWLDIHGNQISELGNYF 598
              + W++     I EL +++
Sbjct: 637 ---VNWINETHTNIPELSSHY 654

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 150/640 (23%), Positives = 250/640 (39%), Gaps = 139/640 (21%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSFD 234
           ++ LNLT N+L  +   +F+ Y    +   G N               L+VL+L +N   
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 235 SLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXXX 273
            L  + F+  + L EL+L               Q N++T       L+   L        
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 274 XXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
                     I        ++F  S  LK++ L +N I   +PG F+ + +L  L L+N 
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 210
Query: 328 EL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLDS 360
           +L    TE    E  N +                 TF GL    L +L+++YN +N + +
Sbjct: 211 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNSL 411
             F  L +L+   LE N I+ +  ++   L N+  L +  +          L +I+  S 
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 330
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
             L  L  L++++N++  I+ N      +L+   L  N  T          SL+TL   +
Sbjct: 331 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-NE 378
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGTF 530
             ++    L+ + LH L    LT+N IS I    F  L  L +L+L  N+I Q++    +
Sbjct: 379 TFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 531 DNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWLD 585
               N+  I L  N YL      F  +P+L  L +    L+  D +  P     +L  LD
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 586 IHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLTN 635
           +  N I+ + +   +E   +L   D   N L  L  +A P            +  L L +
Sbjct: 492 LSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL-------------- 675
           N   ++    F     L  +DL  N L  +      NQ +L+   L              
Sbjct: 551 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 610
Query: 676 PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
           P+ +N+ +  +  NPF C C ++ W  ++      N P L
Sbjct: 611 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 650

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
           CT  H+V+      DCS      Q+P  +P + T L L  N++  + + +F    +L  L
Sbjct: 7   CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 59
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
            +  + +  +  +    L  L +L L  N L+++    F    NL EL+L  N I  I N
Sbjct: 60  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 119
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
             F+   +L  L L HN ++S
Sbjct: 120 NPFVKQKNLITLDLSHNGLSS 140

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L+ L L  + +  I +  F GL  L+ L L  N L  I    FE L+ L  L L YN I 
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
            + +++FL L +LK L LD N++ S    ++   + +Q I L +NPW C C       DY
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DY 416
Query: 947 LQR--SRSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
           L R  +++S  +    +C   S  G  +   + P+
Sbjct: 417 LSRWLNKNSQKEQGSAKC---SGSGKPVRSIICPT 448

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 187/444 (42%), Gaps = 54/444 (12%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
           S+  L+L+ ++LS  +  +F          NL +LDLS N+ + +  + F+ L +L+  +
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
           L+ N +  L  H+L G                         I    F   + L+ + +++
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNN-----ELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
           N I  +   +F  L  L  L LSN+      LT E   +   S LH   +LN+  NK++K
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH---ILNLTKNKISK 395
Query: 358 LDSSIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
           ++S  F  L  L+VL L  N+I + +    +  L N+  + +S NK  ++  NS   + +
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455
Query: 417 LSVLSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
           L  L L    L+ ++ +      L+N T L D   N         +L  L  L+ LDL  
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQH 513
Query: 472 NLITEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
           N +  +   +        L  L  L  L L  N    I   VF+ L  L I++L  N + 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDY 574
            + A  F+N  +L ++ L  N +T +      P   NL  L++  N  +       WF  
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF-- 631
Query: 575 ALIPADLQWLDIHGNQISELGNYF 598
                 + W++     I EL +++
Sbjct: 632 ------VNWINETHTNIPELSSHY 649

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 150/641 (23%), Positives = 251/641 (39%), Gaps = 139/641 (21%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSF 233
           +++ LNLT N+L  +   +F+ Y    +   G N               L+VL+L +N  
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 234 DSLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXX 272
             L  + F+  + L EL+L               Q N++T       L+   L       
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 273 XXXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
                      I        ++F  S  LK++ L +N I   +PG F+ + +L  L L+N
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 327 NEL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLD 359
            +L    TE    E  N +                 TF GL    L +L+++YN +N + 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNS 410
           +  F  L +L+   LE N I+ +  ++   L N+  L +  +          L +I+  S
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG 470
              L  L  L++++N++  I+ N      +L+   L  N  T          SL+TL   
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-N 372
Query: 471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGT 529
           +  ++    L+ + LH L    LT+N IS I    F  L  L +L+L  N+I Q++    
Sbjct: 373 ETFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 530 FDNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWL 584
           +    N+  I L  N YL      F  +P+L  L +    L+  D +  P     +L  L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 585 DIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLT 634
           D+  N I+ + +   +E   +L   D   N L  L  +A P            +  L L 
Sbjct: 486 DLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL------------- 675
           +N   ++    F     L  +DL  N L  +      NQ +L+   L             
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 676 -PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
            P+ +N+ +  +  NPF C C ++ W  ++      N P L
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
           CT  H+V+      DCS      Q+P  +P + T L L  N++  + + +F    +L  L
Sbjct: 2   CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 54
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
            +  + +  +  +    L  L +L L  N L+++    F    NL EL+L  N I  I N
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
             F+   +L  L L HN ++S
Sbjct: 115 NPFVKQKNLITLDLSHNGLSS 135

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
           E NS+D + A      +N++++ ++   ++   +++   L GNKL +I   L+ L +L  
Sbjct: 39  ELNSIDQIIA------NNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI-SALKELTNLTY 89
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
           L L  N +  + N   + L  L  L L EN + ++  GVF+KL+ LT LNLA N++Q + 
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIP--ADLQW 583
            G FD  +NL  + L  N L  +  G+F KL  L  L + +N L+     +      LQ+
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 584 LDIHGN 589
           + +H N
Sbjct: 210 IWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L L GN++  + +  F     L+ L L  + ++++ +  F+ L  L  L L  N+L  
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQI 923
           +    F++L NL EL L YN++  +    F  LT LK L+L  N++ S    V+   + +
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHD 956
           Q I L  NPW C C       +++ +    V +
Sbjct: 208 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 240

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 21/301 (6%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L+ L  +N + N++   D +  K+L +L  + + NNQI  I     A+L+NL  L + NN
Sbjct: 62  LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
           ++  I+   L +LT L+ L L +N +  I   AL   TSLQ    + N++T++ K L NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANL 172
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
            +L+ LD+  N +++I+ L+   L  L  L  T N IS+I+  G+   L  L++     N
Sbjct: 173 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 225
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
             Q  + GT  + +NL  + L  N ++++  L   L  L  L +  N +           
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 284
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
           L  L+++ NQ+ ++     I +   LTY     N +++++  +    ++ LF +NN +S 
Sbjct: 285 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 641 V 641
           V
Sbjct: 342 V 342

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L    NQ+++L     + +  
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 129/527 (24%), Positives = 206/527 (39%), Gaps = 100/527 (18%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYL 252
           ++ LNLT N+L  +   +F+ Y        L +LD   NS   L  E    L  L+ L L
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYS------QLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 253 QGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
           Q N L+ ++D                          F    +L E+ L +NSI+ +    
Sbjct: 81  QHNELSQISDQT------------------------FVFCTNLTELDLMSNSIHKIKSNP 116
Query: 313 FNVLTQLIVLDLSNNELTEEWVNAAT------------------------FSGLHRLVVL 348
           F     LI LDLS+N L+   +                            F G   L  L
Sbjct: 117 FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSN--LHTLIMSNNKLKR 405
           +++ N + +     F+ + +L  L L N Q+   +       LSN  +  L ++NN+L  
Sbjct: 177 DLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLA 236
Query: 406 IESNSLDSL--TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLH 462
              ++   L  T L+ L L  N L  +   +     SL+   L  N +  + P+    L 
Sbjct: 237 TSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLS 296
Query: 463 SLKTLDLGDNLITE---------INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
           +L+ L L      +         I++ S   L  L  L + +NNI +     F  L  L 
Sbjct: 297 NLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLK 356
Query: 514 ILNLAS--NKIQKVEAGTFDN--NSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENL 568
            L+L+     +Q +   TF +  +S L+ + L  N+++ I  G F  L  L  L++  N 
Sbjct: 357 YLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNE 416
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN--AIPH 626
           +E               + G +   L N FEI     L+Y     NK  +L+ +  A+  
Sbjct: 417 IEQ-------------KLSGQEWRGLRNIFEI----YLSY-----NKYLQLSTSSFALVP 454
Query: 627 SVENLFLTNNLISKV--QPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
           S++ L L    +  V   P  F    NLT +DL  N + NIN+  L 
Sbjct: 455 SLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 29/128 (22%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSS----------------------------HV 839
           L +D N IP   S++F G   L+ L L+ +                            H+
Sbjct: 334 LNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI 393
Query: 840 ETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELYLQYNKIIYISNRTFLSL 898
             I N TF+ L +L IL L  N + + + G E+  L N+ E+YL YNK + +S  +F  +
Sbjct: 394 SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALV 453
Query: 899 THLKVLQL 906
             L+ L L
Sbjct: 454 PSLQRLML 461

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L+ L  +N + N++   D +  K+L +L  + + NNQI  I     A+L+NL  L + NN
Sbjct: 62  LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
           ++  I+   L +LT L+ L L +N +  I   AL   TSLQ  +  GN++T++ K L NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNF-GNQVTDL-KPLANL 171
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
            +L+ LD+  N +++I+ L+   L  L  L  T N IS+I+  G+   L  L++     N
Sbjct: 172 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 224
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
             Q  + GT  + +NL  + L  N ++++  L   L  L  L +  N +           
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 283
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
           L  L+++ NQ+ ++     I +   LTY     N +++++  +    ++ LF +NN +S 
Sbjct: 284 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 641 V 641
           V
Sbjct: 341 V 341

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L+  GNQ+++L     + +  
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLE 175
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 176 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 230
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 231 -------IGTLASLTNLTDLDLANN 248

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L+ L  +N + N++   D +  K+L +L  + + NNQI  I     A+L+NL  L + NN
Sbjct: 66  LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
           ++  I+   L +LT L+ L L +N +  I   AL   TSLQ     GN++T++ K L NL
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-GNQVTDL-KPLANL 175
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
            +L+ LD+  N +++I+ L+   L  L  L  T N IS+I+  G+   L  L++     N
Sbjct: 176 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 228
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
             Q  + GT  + +NL  + L  N ++++  L   L  L  L +  N +           
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 287
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
           L  L+++ NQ+ ++     I +   LTY     N +++++  +    ++ LF  NN +S 
Sbjct: 288 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 344
Query: 641 V 641
           V
Sbjct: 345 V 345

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L   GNQ+++L     + +  
Sbjct: 122 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLE 179
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 180 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 234
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 235 -------IGTLASLTNLTDLDLANN 252

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 52/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L  + L NN I  + P     LT L  L+LS+N +++     +  SGL  L  LN + N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFSSN 161
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  L      +L  L+ L + +N++  I     A L+NL +LI +NN++  I       
Sbjct: 162 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 210
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
            T L +L                  T+L +  LNGN+L +I   L +L +L  LDL +N 
Sbjct: 211 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 249
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
             +I+NL+ L+ L +L  L+L  N ISNIS      L+ LT L L  N+++ +      N
Sbjct: 250 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
             NL  + L  N ++DI  +    KL  L + N   N +          ++ WL    NQ
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 360
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
           IS+L     +    +L   D + +N       N +IP++V+N+
Sbjct: 361 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
           L  L+ ++  NN+L  I    LKN T L D  +N N++ +I   L NL +L  L L +N 
Sbjct: 62  LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
           IT+I+   L +L  L  L L+ N IS+IS      L+ L  LN +SN++  ++     N 
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
           + L  + +  N ++DI  +  KL NL  L  + N +       I  +L  L ++GNQ+ +
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
           +G    + S   LT  D ++N+++ L   +    +  L L  N IS + P        LT
Sbjct: 232 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 286
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
            ++L  N+L++       ISP+ + KN+
Sbjct: 287 NLELNENQLED-------ISPISNLKNL 307

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L+   NQ+++L     + +  
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 52/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L  + L NN I  + P     LT L  L+LS+N +++     +  SGL  L  L+ + N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFSSN 161
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  L      +L  L+ L + +N++  I     A L+NL +LI +NN++  I       
Sbjct: 162 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 210
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
            T L +L                  T+L +  LNGN+L +I   L +L +L  LDL +N 
Sbjct: 211 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 249
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
             +I+NL+ L+ L +L  L+L  N ISNIS      L+ LT L L  N+++ +      N
Sbjct: 250 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
             NL  + L  N ++DI  +    KL  L + N   N +          ++ WL    NQ
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 360
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
           IS+L     +    +L   D + +N       N +IP++V+N+
Sbjct: 361 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 22/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
           L  L+ ++  NN+L  I    LKN T L D  +N N++ +I   L NL +L  L L +N 
Sbjct: 62  LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
           IT+I+   L +L  L  L L+ N IS+IS      L+ L  L+ +SN++  ++     N 
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
           + L  + +  N ++DI  +  KL NL  L  + N +       I  +L  L ++GNQ+ +
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
           +G    + S   LT  D ++N+++ L   +    +  L L  N IS + P        LT
Sbjct: 232 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 286
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
            ++L  N+L++       ISP+ + KN+
Sbjct: 287 NLELNENQLED-------ISPISNLKNL 307

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L    NQ+++L     + +  
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 48/239 (20%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP-----MDATE-------------- 807
           ++CP NC C       +N++ CS     N +P  +P     +D +               
Sbjct: 10  VSCPANCLC------ASNILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTR 62
Query: 808 ------LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
                 L L  N +  + S +F+    L+ L L+S+H+ T+    F+ L+ L +L L +N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 862 RLTEIRGYEFERLENLRELYLQYNKI-------IYISNRTFLSLTHLKVLQLDHNRITSF 914
            +  +    FE +  L++LYL  N+I       I   N+    L  L +L L  N++   
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK----LPKLMLLDLSSNKLKKL 178
Query: 915 AVWHLSS----QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQ-IRCMTGSEV 968
            +  L          + L +NP  CDC   + F  +  R  SSV D  + + CM   ++
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           HLE N    Q+ ++  +     + LH   +S N L      +L   T L+ L+LD  EL 
Sbjct: 12  HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            ++ +       L    L+ N+L  +P + + L +L  LD+  N +T +   +L  L +L
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N +  +  G+      L  L+LA+N++ ++ AG  +   NL  + L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
           I
Sbjct: 187 I 187

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N+LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 203/505 (40%), Gaps = 109/505 (21%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
            + +PD +  P  S   L+L+ N L ++ ++SF ++        L+VLDLS     ++  
Sbjct: 19  FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 69
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
             +  LS L  L L GN +  LA  A  G                +        + LKE+
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
            + +N I     P  F+ LT L  LDLS+N++  + +       LH++    + L+++ N
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
            MN +    FK++ RL  L L NN    ++ +     L+ L  H L++        L++ 
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
           + ++L+ L  L++       L+Y  +      N L N +S          ++DF  N   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEIN------------------- 478
                   K  + P +   L SLK L      G N  +E++                   
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 479 --------------NLSLN----------SLHQLAGLRLTENNISNISK-GVFEKLSVLT 513
                         +LS N           L QL  L    +N+  +S+  VF  L  L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDG-----NYLTDIGGLFPKLPNLVWLNISENL 568
            L+++    +    G F+  S+L  +++ G     N+L DI   F +L NL +L++S+  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ 481
Query: 569 LEWFDYALIP--ADLQWLDIHGNQI 591
           LE          + LQ L++  NQ+
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQL 506

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
           F+  + L  L ++ +H     N  FNGL  L +L++  N   E      F  L NL  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDF 939
           L   ++  +S   F SL+ L+VL +  N++ S    ++   + +Q I L +NPW C C  
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Query: 940 TEKFRDYLQR--SRSSVHDISQIRC 962
                DYL R  +++S  +    +C
Sbjct: 537 I----DYLSRWLNKNSQKEQGSAKC 557

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           HLE N    Q+ ++  +     + LH   +S N L      +L   T L+ L+LD  EL 
Sbjct: 12  HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            ++ +       L    L+ N+L  +P + + L +L  LD+  N +T +   +L  L +L
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N +  +  G+      L  L+LA+N++ ++ AG  +   NL  + L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
           I
Sbjct: 187 I 187

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N+LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 159/343 (46%), Gaps = 53/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L  + L NN I  + P     LT L  L+LS+N +++     +  SGL  L  LN   N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFG-N 160
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  L      +L  L+ L + +N++  I     A L+NL +LI +NN++  I       
Sbjct: 161 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 209
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
            T L +L                  T+L +  LNGN+L +I   L +L +L  LDL +N 
Sbjct: 210 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 248
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
             +I+NL+ L+ L +L  L+L  N ISNIS      L+ LT L L  N+++ +      N
Sbjct: 249 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 302
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
             NL  + L  N ++DI  +    KL  L + N   N +          ++ WL    NQ
Sbjct: 303 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 359
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
           IS+L     +    +L   D + +N       N +IP++V+N+
Sbjct: 360 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
           L  L+ ++  NN+L  I    LKN T L D  +N N++ +I   L NL +L  L L +N 
Sbjct: 62  LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
           IT+I+   L +L  L  L L+ N IS+IS      L+ L  LN  +   Q  +     N 
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN---QVTDLKPLANL 171
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
           + L  + +  N ++DI  +  KL NL  L  + N +       I  +L  L ++GNQ+ +
Sbjct: 172 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
           +G    + S   LT  D ++N+++ L   +    +  L L  N IS + P        LT
Sbjct: 231 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 285
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
            ++L  N+L++       ISP+ + KN+
Sbjct: 286 NLELNENQLED-------ISPISNLKNL 306

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L+  GNQ+++L     + +  
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLE 175
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 176 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 230
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 231 -------IGTLASLTNLTDLDLANN 248

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           HLE N    Q+ ++  +     + LH   +S N L      +L   T L+ L+LD  EL 
Sbjct: 12  HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            ++ +       L    L+ N+L  +P + + L +L  LD+  N +T +   +L  L +L
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N +  +  G+      L  L+LA+N++ ++ AG  +   NL  + L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
           I
Sbjct: 187 I 187

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N+LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVH 955
           W C+C+    FR +LQ +  +V+
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVY 228

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 176/447 (39%), Gaps = 77/447 (17%)
Query: 181 TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240
           TLP++  C       L  + N L  +   +FS        INL  LDL+      +  + 
Sbjct: 30  TLPNSTEC-------LEFSFNVLPTIQNTTFSRL------INLTFLDLTRCQIYWIHEDT 76
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYL 300
           F    RL  L L  N L F+A+ AL G                I     +  + L+ +YL
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 301 QNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN------ 353
            +N I+ +  P  F    +L VLD  NN +   +++    S L +   L++  N      
Sbjct: 137 GSNHISSIKLPKGFPT-EKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 354 -KMNKLDSSIFKDL---------------------------------------------- 366
            +    DS++F+ L                                              
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 367 YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426
             ++ ++L+ +   +I  NTF   S L  L ++   L  + S  L  L+ L  L L  N+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANK 312
Query: 427 LEYIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKTLDLGDNLI--TEINNLSL 482
            E + + +  N  SL    + GN  +L      L NL +L+ LDL  + I  ++  NL L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
            +L  L  L L+ N   ++    F++   L +L+LA  +++  +A +   N +L+ +   
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 543 GNYLTDIGG--LFPKLPNLVWLNISEN 567
            + L DI    LF  LP L  LN+  N
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGN 459

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 161/379 (42%), Gaps = 25/379 (6%)
Query: 304 SINVLAPGI----FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           S NVL P I    F+ L  L  LDL+  ++   W++  TF   HRL  L +  N +  + 
Sbjct: 41  SFNVL-PTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
            +       L+ L      I SI      +   L +L + +N +  I+         L V
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 420 LSLDNNELEYIEE---NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG--DNLI 474
           L   NN + Y+ +   ++L+ +T+L   +LNGN +  I     +    ++L+ G   NL+
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI--LNLASNKIQKVEAGTFDN 532
                L  +++  L      + +  +IS  VFE L  +++  +NL  +    + + TF  
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 533 NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE---WFDYALIPADLQWLDIHGN 589
            S L  + L   +L+++      L  L  L +S N  E       +  P+ L  L I GN
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGN 335
Query: 590 QIS-ELGNY----FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPY 644
               ELG       E   +L L++ D  ++    L    + H +++L L+ N    ++  
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTE 394
Query: 645 TFFMKPNLTRVDLVGNRLK 663
            F   P L  +DL   RLK
Sbjct: 395 AFKECPQLELLDLAFTRLK 413

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           HLE N    Q+ ++  +     + LH   +S N L      +L   T L+ L+LD  EL 
Sbjct: 12  HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            ++ +       L    L+ N+L  +P + + L +L  LD+  N +T +   +L  L +L
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N +  +  G+      L  L+LA+N++ ++ AG  +   NL  + L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
           I
Sbjct: 187 I 187

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N+LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 136/579 (23%), Positives = 244/579 (42%), Gaps = 84/579 (14%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
            + +PD +  P  S   L+L+ N L ++ ++SF ++        L+VLDLS     ++  
Sbjct: 43  FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 93
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
             +  LS L  L L GN +  LA  A  G                +        + LKE+
Sbjct: 94  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
            + +N I     P  F+ LT L  LDLS+N++  + +       LH++    + L+++ N
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 211
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
            MN +    FK++ RL  L L NN    ++ +     L+ L  H L++        L++ 
Sbjct: 212 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
           + ++L+ L  L++       L+Y  +      N L N +S          ++DF  N   
Sbjct: 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 330
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEINNLSLNSLHQLAGLRLTENN 497
                   K  + P +   L SLK L      G N  +E++      L  L  L L+ N 
Sbjct: 331 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNG 382
Query: 498 IS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GL 552
           +S     S+  F  +S L  L+L+ N +  + +  F     L  +    + L  +    +
Sbjct: 383 LSFKGCCSQSDFGTIS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYF-EIESQLR-LTY 608
           F  L NL++L+IS          +    + L+ L + GN   E  N+  +I ++LR LT+
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTF 498
Query: 609 FDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
            D S  +L +L+  A     S++ L +++N    +  + +    +L  +D   N +    
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCN----MQWLQ 701
           +  L+  P     ++    + +N F C C     +QW++
Sbjct: 559 KQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIK 593

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 45  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164
Query: 916 V 916
           +
Sbjct: 165 L 165

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
           F+  + L  L ++ +H     N  FNGL  L +L++  N   E      F  L NL  L 
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
           L   ++  +S   F SL+ L+VL + HN   S   +                        
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
              H  S +  + LT N ++C C+  + F  +++  R  + ++ ++ C T S+
Sbjct: 561 ELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMECATPSD 612

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
           L +S N L      +L   T L+ L+LD  EL  ++ +       L    L+ N+L  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
            + + L +L  LD+  N +T +   +L  L +L  L L  N +  +  G+      L  L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
           +LA+N + ++ AG  +   NL  + L  N L  I
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 136/579 (23%), Positives = 243/579 (41%), Gaps = 84/579 (14%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
            + +PD +  P  S   L+L+ N L ++ ++SF ++        L+VLDLS     ++  
Sbjct: 19  FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 69
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
             +  LS L  L L GN +  LA  A  G                +        + LKE+
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
            + +N I     P  F+ LT L  LDLS+N++  + +       LH++    + L+++ N
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
            MN +    FK++ RL  L L NN    ++ +     L+ L  H L++        L++ 
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
           + ++L+ L  L++       L+Y  +      N L N +S          ++DF  N   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEINNLSLNSLHQLAGLRLTENN 497
                   K  + P +   L SLK L      G N  +E++      L  L  L L+ N 
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNG 358
Query: 498 IS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GL 552
           +S     S+  F   S L  L+L+ N +  + +  F     L  +    + L  +    +
Sbjct: 359 LSFKGCCSQSDFGTTS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYF-EIESQLR-LTY 608
           F  L NL++L+IS          +    + L+ L + GN   E  N+  +I ++LR LT+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTF 474
Query: 609 FDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
            D S  +L +L+  A     S++ L +++N    +  + +    +L  +D   N +    
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCN----MQWLQ 701
           +  L+  P     ++    + +N F C C     +QW++
Sbjct: 535 KQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIK 569

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
           ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +  +  L  L  
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           L L  N +  +    F  L +L++L      +  + N     L  LK L + HN I SF 
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 916 V 916
           +
Sbjct: 141 L 141

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
           F+  + L  L ++ +H     N  FNGL  L +L++  N   E      F  L NL  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
           L   ++  +S   F SL+ L+VL + HN   S   +                        
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
              H  S +  + LT N ++C C+  + F  +++  R  + ++ ++ C T S+
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMECATPSD 588

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 35  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 92
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 93  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 171 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 207
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 208 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 241

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +L+++ N +     +      RL  L+L+  ++  +  +   +L  L TL +S+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           +      +L AL+VL +  N L  +   AL+    LQ+ +L GN+L  +P  +L     L
Sbjct: 92  LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + L L +N +TE+    LN L  L  L L EN++  I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           NR+  +   +  G  +LQ L+L  + ++T+         +L  L L +N LTE+      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
            LENL  L LQ N +  I    F S             +  FA  H            NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
           W C+C+    FR +LQ +  +V+   Q   ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 159/343 (46%), Gaps = 53/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L  + L NN I  + P     LT L  L+LS+N +++     +  SGL  L  L+   N
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFG-N 165
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  L      +L  L+ L + +N++  I     A L+NL +LI +NN++  I       
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 214
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
            T L +L                  T+L +  LNGN+L +I   L +L +L  LDL +N 
Sbjct: 215 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 253
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
             +I+NL+ L+ L +L  L+L  N ISNIS      L+ LT L L  N+++ +      N
Sbjct: 254 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
             NL  + L  N ++DI  +    KL  L + N   N +          ++ WL    NQ
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 364
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
           IS+L     +    +L   D + +N       N +IP++V+N+
Sbjct: 365 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
           L  L+ ++  NN+L  I    LKN T L D  +N N++ +I   L NL +L  L L +N 
Sbjct: 67  LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
           IT+I+   L +L  L  L L+ N IS+IS      LS LT L   S   Q  +     N 
Sbjct: 124 ITDID--PLKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
           + L  + +  N ++DI  +  KL NL  L  + N +       I  +L  L ++GNQ+ +
Sbjct: 177 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
           +G    + S   LT  D ++N+++ L   +    +  L L  N IS + P        LT
Sbjct: 236 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 290
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
            ++L  N+L++       ISP+ + KN+
Sbjct: 291 NLELNENQLED-------ISPISNLKNL 311

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ L  +  + N +++I+    + L+ L  + + +N+I  +      N +NL  + L  N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
            +TDI  L   L NL  L +S N +           LQ L   GNQ+++L     + +  
Sbjct: 123 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLE 180
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           RL   D SSNK+++++  A   ++E+L  TNN IS + P       NL  + L GN+LK+
Sbjct: 181 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
                  I  L S  N+ D  +  N
Sbjct: 236 -------IGTLASLTNLTDLDLANN 253

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 58/283 (20%)
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES--IHRNTFASLSNLHT 395
           TF GL  L++L + YN+  +L++  F  L  L+VL L    ++   +  N F  L++L  
Sbjct: 74  TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 396 LIMSNNKLKRIESNSLD-SLTALSVLSLDNNELEYIEENALKN------------STSLQ 442
           L++ +N +K+I+  S   ++    VL L  N+++ I E  L N            S +LQ
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI--------------TEINNLSLNSLHQL 488
           D +       +     +N  S+ TLDL  N                T+I +L L++ + +
Sbjct: 194 DMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 489 A-----------------GLR--------LTENNISNISKGVFEKLSVLTILNLASNKIQ 523
                             GL         L+++ I  + K VF   + L  L LA N+I 
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLN 563
           K++   F   ++L  + LD N L  +  G+F +L +L  +WL+
Sbjct: 313 KIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 355

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 26/207 (12%)
Query: 792 GYDNQLPPRIPMDATELYLDGNRIPVVGSHSF---IGRKKLQILFLNSSH---------- 838
           G++    P      T L L GN      +  F   I   K+Q L L++S+          
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 839 VETIHNKTFNGLKELIILRLD--DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL 896
            +   N TF GL+   +   D   +++  +    F    +L +L L  N+I  I +  F 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 897 SLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRS 952
            LTHLK L LD N++ S    ++   + +Q I L +NPW C C       DYL R  +++
Sbjct: 321 GLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKN 376
Query: 953 SVHDISQIRCMTGSEVGFTIMRTVIPS 979
           S  +    +C   S  G  +   + P+
Sbjct: 377 SQKEQGSAKC---SGSGKPVRSIICPT 400

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
           L SLSYL+L++N LS     S+S+  T     +LR LDLS N    + A  F  L  LQ 
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSA-NFMGLEELQH 398
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
           L  Q + L  + + +                   +     N   D   ++L   S+N L 
Sbjct: 399 LDFQHSTLKRVTEFS---------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
Query: 310 -----------PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
                        +F   T L  LDLS  +L  E ++   F  LHRL +LN+++N +  L
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLFL 507
Query: 359 DSSIFKDLYRLQVLHLENNQIES 381
           DSS +  LY L  L    N+IE+
Sbjct: 508 DSSHYNQLYSLSTLDCSFNRIET 530

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
           +++P  IP     + L  N + ++ S+SF    +LQ L L+   +ETI +K ++GL  L 
Sbjct: 19  SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
            L L  N +       F  L +L  L     K+  + +     L  LK L + HN I S
Sbjct: 79  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 36/345 (10%)
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
           +NL  LDL+    + +  + F    +L  L L GN L F+A+ +L+G             
Sbjct: 54  MNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTG 113
Query: 281 XXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
              +     +   +L+ +YL +N I+ +  P  F     L VLD  NN +   +++    
Sbjct: 114 ISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPA-RNLKVLDFQNNAI--HYISREDM 170
Query: 340 SGLHRLVVLNIAYN-------KMNKLDSSIFKDLY-----RLQVLH--LENNQIESIHRN 385
             L + + L++ +N       ++   DS+IF+ L       L V+   L+N+  +S+   
Sbjct: 171 RSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLG 230
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNSTSLQD 443
           TF  + +           + I S  L  L  +SV SL+  E  +  I     +  T LQ+
Sbjct: 231 TFEDIDD-----------EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQE 279
Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
             L    L  +P  ++ L+ LK L L  N   ++  +S  +   L  L +   N+  +  
Sbjct: 280 LDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI-RGNVKKLHL 338
Query: 504 GV--FEKLSVLTILNLASNKIQKVEAGTFD--NNSNLVAIRLDGN 544
           GV   EKL  L  L+L+ N I+  +  +    N S+L  + L  N
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L  ++N +  + +  F  L  L  L L   QI  IH +TF S   L TL+++ N L  + 
Sbjct: 35  LEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVL--RNLHS 463
             SL+   +L  L L    +  +E   + N  +L+  +L  N ++ I  PK    RN   
Sbjct: 95  ETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARN--- 151
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRL--TENNISNISKGVFE 507
           LK LD  +N I  I+   + SL Q   L L    NN+  I  G F+
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFD 197

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
           L SLSYL+L++N LS     S+S+  T     +LR LDLS N    + A  F  L  LQ 
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSA-NFMGLEELQH 403
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
           L  Q + L  + + +                   +     N   D   ++L   S+N L 
Sbjct: 404 LDFQHSTLKRVTEFS---------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 310 -----------PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
                        +F   T L  LDLS  +L  E ++   F  LHRL +LN+++N +  L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 359 DSSIFKDLYRLQVLHLENNQIES 381
           DSS +  LY L  L    N+IE+
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIET 535

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
           +++P  IP     + L  N + ++ S+SF    +LQ L L+   +ETI +K ++GL  L 
Sbjct: 24  SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
            L L  N +       F  L +L  L     K+  + +     L  LK L + HN I S
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           L++N +  L  G+F+ LTQL  L LS+N L+ +   + +  G   L  L++++N +  + 
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM- 93
Query: 360 SSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
           SS F  L +L+ L  +++ ++ +   + F SL NL  L +S+   +   +   + L++L 
Sbjct: 94  SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
           VL +  N     +EN L                   P +   L +L  LDL    + +++
Sbjct: 154 VLKMAGNS---FQENFL-------------------PDIFTELRNLTFLDLSQCQLEQLS 191
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
             + NSL  L  L ++ NN  ++    ++ L+ L +L+ + N I
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
           F+  + L  L ++ +H     N  FNGL  L +L++  N   E      F  L NL  L 
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
           L   ++  +S   F SL+ L+VL + HN   S   +                        
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
              H  S +  + LT N ++C C+  + F  +++  R  + ++ ++ C T S+
Sbjct: 242 ELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERMECATPSD 293

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 138/310 (44%), Gaps = 29/310 (9%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
           VL  ++N +  + ++ F  L  L  L L   QI  +H +TF S   L+T++++ N L  +
Sbjct: 36  VLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFM 95
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSL 464
              SL     L  L L    +  +E   + N  +L+  HL  N ++ I  P+      +L
Sbjct: 96  AETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNL 154
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL--TENNISNISKG-----VFEKLSVLTILN- 516
           K LD  +N I  I+    NSL Q   L L    N+I  I  G     +F+ L     LN 
Sbjct: 155 KVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNL 214
Query: 517 ------LASNKIQKVEAGTFDNNSN--LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
                 L ++ +Q +  GTF++  +  L +   +G  L D+      L    + ++S + 
Sbjct: 215 FIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEG--LCDMSVESINLQKHRFSDLSSST 272
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS-NKLTELTGNAIPHS 627
              F        +Q LD+    ++ L +  E  + L+    +A+S ++L ++   + P S
Sbjct: 273 FRCF------TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFP-S 325
Query: 628 VENLFLTNNL 637
           + +L++  N+
Sbjct: 326 LRDLYIKGNM 335

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 14/261 (5%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
           +K + L NN I  ++         L  L L++N +    +   +FS L  L  L+++YN 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 111
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNT-FASLSNLHTLIMSN-NKLKRIESNSLD 412
           ++ L SS FK L  L  L+L  N  +++   + F+ L+ L  L + N +   +I+     
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS------LKT 466
            LT L  L +D ++L+  E  +LK+  ++    L+  +   + ++  ++ S      L+ 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 467 LDLGDNLITEINNLSLNSLHQ---LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
            DL     +E++    NSL +      +++T+ ++  + K +  ++S L  L  + N+++
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK 290
Query: 524 KVEAGTFDNNSNLVAIRLDGN 544
            V  G FD  ++L  I L  N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
           L  IP  L    ++K+LDL +N IT I+N  L     L  L LT N I+ I +  F  L 
Sbjct: 43  LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI 564
            L  L+L+ N +  + +  F   S+L  + L GN    +G   LF  L  L  L +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C      +  +++C      + +P  IP D   L+L+ N+I  +    F     
Sbjct: 6   CPSQCSC------DQTLVNCQNIRLAS-VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVN 58
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK-- 886
           LQ L+ NS+ +  I    F+ L +L  L L+DN L  I    F+ L++L  +YL  N   
Sbjct: 59  LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118
Query: 887 -----IIYISN 892
                I+Y+ N
Sbjct: 119 CECRDIMYLRN 129

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
           L L++N++T++    F+ L NL++LY   NK+  I    F  LT L  L L+ N + S  
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 915 --AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV 954
             A  +L S +  I L +NPW C+C      R+++    S V
Sbjct: 98  RGAFDNLKS-LTHIYLYNNPWDCECRDIMYLRNWVADHTSIV 138

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
           T A L  + TL   N  +  IE   +  L  L  L L +N++  +    LKN T + +  
Sbjct: 42  TQADLDGIATLSAFNTGVTTIEG--IQYLNNLIGLELKDNQITDLTP--LKNLTKITELE 97
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
           L+GN L  +   +  L S+KTLDL    IT++  L+   L  L  L L  N I+NIS   
Sbjct: 98  LSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP-- 152
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
              L+ L  L++ +N++  +      N S L  +R D N ++DI  L   LPNL+ +++ 
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLA-SLPNLIEVHLK 209
Query: 566 EN 567
           +N
Sbjct: 210 DN 211

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
           +YL +N I  L PG+F+ LTQL  LDL NN+LT                           
Sbjct: 43  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------------- 76
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L + +F  L +L  L L +NQ++SI R  F +L +L  + + NN
Sbjct: 77  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           QVL+L +NQI  +    F  L+ L  L + NN+L  + +   D LT L+ LSL++N+L+ 
Sbjct: 41  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 430 IEENALKNSTSLQDFHL 446
           I   A  N  SL    L
Sbjct: 101 IPRGAFDNLKSLTHIWL 117

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S S      +G  L  +P  +    + + L L DN IT++     + L QL  L L  N 
Sbjct: 16  SCSGTTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 73
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
           ++ +  GVF+KL+ LT L+L  N+++ +  G FDN  +L  I L
Sbjct: 74  LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           L L +N I+ +  GVF++L+ LT L+L +N++  + AG FD  + L  + L+ N L  I 
Sbjct: 43  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 551 -GLFPKLPNL--VWL 562
            G F  L +L  +WL
Sbjct: 103 RGAFDNLKSLTHIWL 117

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 63/172 (36%), Gaps = 59/172 (34%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          +DCS G     +P  IP                          
Sbjct: 11  CPSQCSC------SGTTVDCS-GKSLASVPTGIPTTT----------------------- 40
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
            Q+L+L  + +  +    F+ L +L  L LD+N+LT +    F++L  L +L L  N++ 
Sbjct: 41  -QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 99
Query: 889 YISNRTF---LSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDC 937
            I    F    SLTH               +W          L +NPW C C
Sbjct: 100 SIPRGAFDNLKSLTH---------------IW----------LLNNPWDCAC 126

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
           +YL +N I  L PG+F+ LTQL  LDL NN+LT                           
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------------- 68
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L + +F  L +L  L L +NQ++SI R  F +L +L  + + NN
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           QVL+L +NQI  +    F  L+ L  L + NN+L  + +   D LT L+ LSL++N+L+ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 430 IEENALKNSTSLQDFHLNGN 449
           I   A  N  SL    L  N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S S      +G  L  +P  +    + + L L DN IT++     + L QL  L L  N 
Sbjct: 8   SCSGTTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
           ++ +  GVF+KL+ LT L+L  N+++ +  G FDN  +L  I L
Sbjct: 66  LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 59/174 (33%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
           M CP+ C+C          +DCS G     +P  IP                        
Sbjct: 1   MACPSQCSC------SGTTVDCS-GKSLASVPTGIPTTT--------------------- 32
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
              Q+L+L  + +  +    F+ L +L  L LD+N+LT +    F++L  L +L L  N+
Sbjct: 33  ---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 887 IIYISNRTF---LSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDC 937
           +  I    F    SLTH               +W          L +NPW C C
Sbjct: 90  LKSIPRGAFDNLKSLTH---------------IW----------LLNNPWDCAC 118

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
           M CP+ C+C          +DCS G     +P  IP     LYL  NRI  +    F   
Sbjct: 1   MACPSQCSC------SGTTVDCS-GKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL 53
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            +L  L L+++ +  +    F+ L +L  L L+DN+L  I    F+ L +L  ++L  N 
Sbjct: 54  TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
Query: 887 -------IIYIS 891
                  I+Y+S
Sbjct: 114 WDCACSDILYLS 125

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
            L+ F     +LT IP  +L ++ +L  L+L  N I E+ +   + L  L  +    N +
Sbjct: 124 GLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL 182
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             + +G+F K+  L  LNLASN+++ V  G FD  ++L  I L  N
Sbjct: 183 RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           L++N I  LAP     LT++  L+LS N L     N +  +GL  +  L++   ++   D
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQIT--D 121
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
            +    L  LQVL+L+ NQI +I     A L+NL  L + N ++  +    L +L+ L+ 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
           L  D+N++  I    L +  +L + HL  N+++++   L N  +L  + L +  IT
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTIT 230

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 12/206 (5%)
Query: 362 IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLS 421
           IF D      + +   +       T A L  + TL      +  IE   +  L  L  L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69
Query: 422 LDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
           L +N++  +    LKN T + +  L+GN L  +   +  L S+KTLDL    IT++  L+
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 482 LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
              L  L  L L  N I+NIS      L+ L  L++ + ++  +      N S L  ++ 
Sbjct: 127 --GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180
Query: 542 DGNYLTDIGGLFPKLPNLVWLNISEN 567
           D N ++DI  L   LPNL+ +++  N
Sbjct: 181 DDNKISDISPLA-SLPNLIEVHLKNN 205

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF--ASLSNLHT 395
            F    +L  LN+AYN++ ++ ++      +++ L   +N+++ I  N F   S+S    
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVXSA 406
Query: 396 LIMSNNKLKRIESNSLDSLTA-------LSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
           +  S N++  ++  + D L         +S ++L NN++    +      + L   +L G
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXG 466
Query: 449 NKLTEIPK--------VLRNLHSLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNIS 499
           N LTEIPK          +N + L ++DL  N +T++ ++    +L  L G+ L+ N+ S
Sbjct: 467 NXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 54/275 (19%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
           LT L  L+L+ N++T+     +  S L +L  L I  NK+   D S  ++L  L+ L+L 
Sbjct: 65  LTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118
Query: 376 NNQIESI------------------HRNTFASLSN---LHTLIMSNNKLKRIESNSLDSL 414
            + I  I                  + +  + LSN   L+ L ++ +K+K +    + +L
Sbjct: 119 EDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANL 176
Query: 415 TALSVLSLDNNELEYIEENA--------------------LKNSTSLQDFHLNGNKLTEI 454
           T L  LSL+ N++E I   A                    + N T L    +  NK+T++
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDL 236
Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI 514
              L NL  L  L++G N I++IN  ++  L +L  L +  N IS+IS  V   LS L  
Sbjct: 237 SP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKXLNVGSNQISDIS--VLNNLSQLNS 291
Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
           L L +N++   +       +NL  + L  N++TDI
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 172/424 (40%), Gaps = 60/424 (14%)
Query: 180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPA 238
           W L D        L +L ++ NK+S        + D +RC +NL  LD+S+N+F + +P 
Sbjct: 171 WVLSDGC----GELKHLAISGNKIS-------GDVDVSRC-VNLEFLDVSSNNFSTGIPF 218
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
            G    S LQ L + GN L+     A+                        +   +LK +
Sbjct: 219 LG--DCSALQHLDISGNKLSGDFSRAI------------------------STCTELKLL 252
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
            + +N      P +   L  L  L L+ N+ T E  +  +      L  L+++ N     
Sbjct: 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGA 309
Query: 359 DSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
               F     L+ L L +N     +  +T   +  L  L +S N+       SL +L+A 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA- 368
Query: 418 SVLSLD---NNELEYIEENALKN-STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
           S+L+LD   NN    I  N  +N   +LQ+ +L  N  T +IP  L N   L +L L  N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
            ++     SL SL +L  L+L  N +          +  L  L L  N +         N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 533 NSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQ------WLD 585
            +NL  I L  N LT +I     +L NL  L +S N         IPA+L       WLD
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLD 544
Query: 586 IHGN 589
           ++ N
Sbjct: 545 LNTN 548

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 172/424 (40%), Gaps = 60/424 (14%)
Query: 180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPA 238
           W L D        L +L ++ NK+S        + D +RC +NL  LD+S+N+F + +P 
Sbjct: 168 WVLSDGC----GELKHLAISGNKIS-------GDVDVSRC-VNLEFLDVSSNNFSTGIPF 215
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
            G    S LQ L + GN L+     A+                        +   +LK +
Sbjct: 216 LG--DCSALQHLDISGNKLSGDFSRAI------------------------STCTELKLL 249
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
            + +N      P +   L  L  L L+ N+ T E  +  +      L  L+++ N     
Sbjct: 250 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGA 306
Query: 359 DSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
               F     L+ L L +N     +  +T   +  L  L +S N+       SL +L+A 
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA- 365
Query: 418 SVLSLD---NNELEYIEENALKN-STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
           S+L+LD   NN    I  N  +N   +LQ+ +L  N  T +IP  L N   L +L L  N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
            ++     SL SL +L  L+L  N +          +  L  L L  N +         N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 533 NSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQ------WLD 585
            +NL  I L  N LT +I     +L NL  L +S N         IPA+L       WLD
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLD 541
Query: 586 IHGN 589
           ++ N
Sbjct: 542 LNTN 545

>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP Length = 146

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
            K +D  V +S +D    A++L   LE    + +  L  R+   GG I   + QA+ SS  
Sbjct: 9    KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
             +++++  F++  WC+Y+   A  +    +   I +LLG + +    P++R 
Sbjct: 68   RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLLG-LSRAAYPPELRF 118

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L+ + L+++ IN +    F  L  L  LDLS+N L+   ++++ F  L  L  LN+  N
Sbjct: 77  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGN 134
Query: 354 KMNKLD-SSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
               L  +S+F +L  LQ L + N +  S I R  FA L++L+ L +    L+  +S SL
Sbjct: 135 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 194
Query: 412 DSLTALSVLSLDNNELEYIEE 432
            S+  +  L+L  +E  ++ E
Sbjct: 195 KSIRDIHHLTLHLSESAFLLE 215

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L++++NK+  +     +    LQVL L++++I +I  + F SL +L  L +S+N L  + 
Sbjct: 57  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHL-NGNKLTEIPKV-LRNLHSL 464
           S+    L++L  L+L  N  + +   +L  N T+LQ   + N    +EI ++    L SL
Sbjct: 117 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 176
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL 493
             L++    +    + SL S+  +  L L
Sbjct: 177 NELEIKALSLRNYQSQSLKSIRDIHHLTL 205

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           +L+ + L+++ IN +    F  L  L  LDLS+N L+   ++++ F  L  L  LN+  N
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGN 108
Query: 354 KMNKLD-SSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
               L  +S+F +L  LQ L + N +  S I R  FA L++L+ L +    L+  +S SL
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 412 DSLTALSVLSLDNNELEYIEE 432
            S+  +  L+L  +E  ++ E
Sbjct: 169 KSIRDIHHLTLHLSESAFLLE 189

>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP Length = 146

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
            K +D  V +S +D    A++L   LE    + +  L  R+   GG I   + QA+ SS  
Sbjct: 9    KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
             +++++  F++  WC+Y+   A  +   G +   + LL  + +    P++R 
Sbjct: 68   RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 118

>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein Length = 145

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
            K +D  V +S +D    A++L   LE    + +  L  R+   GG I   + QA+ SS  
Sbjct: 8    KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 66
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
             +++++  F++  WC+Y+   A  +   G +   + LL  + +    P++R 
Sbjct: 67   RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 117

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
           +K + L NN I  ++         L  L L++N +    +   +FS L  L  L+++YN 
Sbjct: 28  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 85
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNT-FASLSNLHTLIMSN-NKLKRIESNSLD 412
           ++ L SS FK L  L  L+L  N  +++   + F+ L+ L  L + N +   +I+     
Sbjct: 86  LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 413 SLTALSVLSLDNNELEYIEENALKN 437
            LT L  L +D ++L+  E  +LK+
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKS 170

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
           L  IP  L    ++K+LDL +N IT I+N  L     L  L LT N I+ I +  F  L 
Sbjct: 17  LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI 564
            L  L+L+ N +  + +  F   S+L  + L GN    +G   LF  L  L  L +
Sbjct: 75  SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
           + L L  N IT++     +SL QL  L L  N ++ +  GVF+KL+ LT L L  N+++ 
Sbjct: 43  QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 525 VEAGTFDNNSNLVAIRLDGN 544
           +  G FDN  +L  I L  N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           L L  N I+ +  GVF+ L+ LT LNLA N++  +  G FD  + L  + L  N L  I 
Sbjct: 45  LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 551 -GLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGN 596
            G+F  L +L  + +  N   W  + + I     W+  H + ++ LGN
Sbjct: 105 MGVFDNLKSLTHIYLFNN--PWDCECSDILYLKNWIVQHASIVNPLGN 150

>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP Length = 146

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
            K +D  V +S ++    A++L   LE    + +  L  R+   GG I   + QA+ SS  
Sbjct: 9    KDYDVCVCHS-EENLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
             +++++  F++  WC+Y+   A  +   G +   + LL  + +    P++R 
Sbjct: 68   RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1269
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-147
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-80
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-117
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-113
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-80
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-89
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-72
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-70
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-57
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-62
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-51
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-60
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-40
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-40
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-38
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-47
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-43
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-14
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2js7_A	160	Myeloid differentiation primary response protein M	6e-52
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	9e-52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-40
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-31
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	7e-50
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-30
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	8e-42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-40
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-34
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-30
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-36
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-32
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-30
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-32
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-29
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-24
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-20
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-20
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-21
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	9e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	8e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-06
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-04

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  464 bits (1196), Expect = e-147
 Identities = 163/931 (17%), Positives = 325/931 (34%), Gaps = 126/931 (13%)

Query: 349  NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR-IE 407
             IA+ +   L + + + L   + L L  N I ++  ++F  L  L  L + +      I+
Sbjct: 7    RIAFYRFCNL-TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 408  SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI---PKVLRNLHSL 464
              +  +L  L +L L ++++ ++  +A +    L +  L    L++        RNL +L
Sbjct: 66   KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 465  KTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASNK 521
              LDL  N I  +  + S   L+ L  +  + N I  + +   E L    L+  +LA+N 
Sbjct: 126  TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 522  IQKVEAGTFDNNSN-LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
            +    +  +    N    + L+   ++  G     +       IS++             
Sbjct: 186  LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLIL---AHH 241

Query: 581  LQWLDIHGNQISELG-NYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNL 637
            +       + I +   N F   ++  + + D S   +  L          ++ L L  N 
Sbjct: 242  IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 638  ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNM 697
            I+K+    F+   NL  ++L  N L  +  +            +    + +N        
Sbjct: 302  INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-----GLPKVAYIDLQKNH------- 349

Query: 698  QWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHC 757
              +        +    L  LD     L  N                          L   
Sbjct: 350  --IAIIQDQTFKFLEKLQTLD-----LRDNA-------------------------LTTI 377

Query: 758  CDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDA---TELYLDGNR 814
                +        N       ++  AN+I  S    +N       +       L L+ NR
Sbjct: 378  HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 815  IPVV-GSHSFIGRKKLQILFLNSSHVE-----TIHNKTFNGLKELIILRLDDNRLTEIRG 868
                 G  +      L+ LFL  + ++      +    F GL  L +L L+ N L  +  
Sbjct: 438  FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

Query: 869  YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITL 928
              F  L  LR L L  N++  +S+    +  +L++L +  N++ +       S +  + +
Sbjct: 498  GVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS-LSVLDI 554

Query: 929  TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV-GFTIMRTVIPSCNVVSTNV 987
            T N + C+C+ +         + +     + I C+      G ++       C+      
Sbjct: 555  THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD------ 608

Query: 988  SSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLL 1047
                                                +     +   + +V    + + L+
Sbjct: 609  -----------------------------------EEEVLKSLKFSLFIVCTVTLTLFLM 633

Query: 1048 ILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPIL 1107
             ++ + +     +   +   RL +K      +     +DA++ +SSKD  +V   L   L
Sbjct: 634  TILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHL 693

Query: 1108 EN---GDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSA 1164
            +        + LC   R+F  G      I  A+ +SR+ + ++S +F++  WC   F  A
Sbjct: 694  DTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYA 753

Query: 1165 HHQVLRGKK-RLIVILLGEVPQKDL--DPDIRLYLKSNTYLQWGDK-----LFWEKLKFA 1216
              + L      LI++++G + Q  L     IR +++   YL+W +       F  KL   
Sbjct: 754  QGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQ 813

Query: 1217 LPDVPNNQRNNNNRN-QVRHLNHSAHHHNHN 1246
            +      ++ +NN   Q       +HHH+H+
Sbjct: 814  ILKKEKEKKKDNNIPLQTVATISGSHHHHHH 844

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  313 bits (804), Expect = 2e-91
 Identities = 136/589 (23%), Positives = 232/589 (39%), Gaps = 60/589 (10%)

Query: 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQ 167
            Q L   + L + F  I  ++A SF  L +L+ L L +         L I    F + L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRN-LP 73

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTARCGINLRV 225
           +L  LDL  + I+ L    F  L  L  L L    LS+       F N         L  
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------ALTR 127

Query: 226 LDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGL--NSLTVLNLSVNNLV 282
           LDLS N   SL     F +L+ L+ +    N +  + +H L+ L   +L+  +L+ N+L 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 283 NIPPELFNQS------RDLKEVYLQNNSINVLAPGIFN------------VLTQLIVLDL 324
           +     + +         L+ + +  N   V   G F+            +   ++    
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 325 SNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
             + + +   +  TF+GL R  +  L++++  +  L+S +F+ L  L+VL+L  N+I  I
Sbjct: 248 GFHNIKD--PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442
               F  L NL  L +S N L  + S++   L  ++ + L  N +  I++   K    LQ
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
              L  N LT I      + S+  + L  N +  +  ++L +      + L+EN + N+ 
Sbjct: 366 TLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLD 417

Query: 503 KGVF-EKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI------GGLFP 554
              F  ++  L IL L  N+        T   N +L  + L  N L           +F 
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 555 KLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDAS 612
            L +L  L ++ N L      +      L+ L ++ N+++ L +         L   D S
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND---LPANLEILDIS 534

Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNR 661
            N+L     +            N  I + +  TF    N T V + G  
Sbjct: 535 RNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  281 bits (720), Expect = 4e-80
 Identities = 126/595 (21%), Positives = 220/595 (36%), Gaps = 63/595 (10%)

Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTARCGIN 222
             L + E L LS N I T+  + F  L+ L  L L        +   +F N        N
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP------N 74

Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNN 280
           LR+LDL ++    L  + F  L  L EL L    L+   L D     L +LT L+LS N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 281 LVNIPPE-LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ--LIVLDLSNNELTE----EW 333
           + ++     F +   LK +   +N I ++       L    L    L+ N L      +W
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIF------------KDLYRLQVLHLENNQIES 381
                      L +L+++ N      +  F               + +       + I+ 
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 382 IHRNTFASL--SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
             +NTFA L  S++  L +S+  +  + S   ++L  L VL+L  N++  I + A     
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
           +LQ  +L+ N L E+       L  +  +DL  N I  I + +   L +L  L L +N +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL--FPKL 556
           + I       +  +  + L+ NK+  +       N     I L  N L ++  L    ++
Sbjct: 375 TTIH-----FIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRV 425

Query: 557 PNLVWLNISENLLEWFDYALIPAD---LQWLDIHGNQISELGNYFEIESQL----RLTYF 609
           P+L  L +++N          P++   L+ L +  N +                  L   
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 610 DASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
             + N L  L      H  ++  L L +N ++ +         NL  +D+  N+L   N 
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543

Query: 668 TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
                       ++    I  N F C+C +    ++  +             + C
Sbjct: 544 DVF--------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAG--PPADIYC 588

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  221 bits (566), Expect = 4e-60
 Identities = 103/433 (23%), Positives = 173/433 (39%), Gaps = 38/433 (8%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR-THNTDWSTMSLDISHNVFT 163
             SF  L  LK +     +I  +       L+           N+ +S +S+D    +  
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 164 DELQSLESLDLSMNSIWTLPDAIFC------------PLQSLSYLNLTQNKLSNVATFSF 211
                LE LD+S N         F                 +       + + +    +F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
           +         ++R LDLS+    SL +  F  L  L+ L L  N +  +AD A  GL++L
Sbjct: 261 AGL----ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
            VLNLS N L  +    F     +  + LQ N I ++    F  L +L  LDL +N LT 
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375

Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASL 390
                 T   +  +  + ++ NK+  L            ++HL  N++E++    F   +
Sbjct: 376 ------TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRV 425

Query: 391 SNLHTLIMSNNKLKRIESNSLDS-LTALSVLSLDNNELEY-----IEENALKNSTSLQDF 444
            +L  LI++ N+      +   S   +L  L L  N L+      +  +  +  + LQ  
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 445 HLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
           +LN N L  +P  V  +L +L+ L L  N +T +++  L     L  L ++ N +   + 
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNP 543

Query: 504 GVFEKLSVLTILN 516
            VF  LSVL I +
Sbjct: 544 DVFVSLSVLDITH 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  379 bits (976), Expect = e-117
 Identities = 142/687 (20%), Positives = 258/687 (37%), Gaps = 83/687 (12%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
             L   +F     L  L V F  I  L     + L  LK                     
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV-------------------- 77

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
                      L+L  N +  L D  F    +L+ L+L  N +  +    F         
Sbjct: 78  -----------LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK------Q 120

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN--SLTVLNLSV 278
            NL  LDLS+N   S       +L  LQEL L  N +  L    LD     SL  L LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV---LTQLIVLDLSNNELTEEWVN 335
           N +    P  F+    L  ++L N  +         +    T +  L LSN++L+    +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TS 238

Query: 336 AATFSGLH--RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL 393
             TF GL    L +L+++YN +N + +  F  L +L+   LE N I+ +  ++   L N+
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 394 HTLIMSNN---------KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
             L +  +          L +I+  S   L  L  L++++N++  I+ N      +L+  
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 445 HLNGNKL---TEIPKVLRNL--HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
            L+ +     T   +   +L    L  L+L  N I++I + + + L  L  L L  N I 
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 500 -NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG---GLFPK 555
             ++   +  L  +  + L+ NK  ++   +F    +L  + L    L ++      F  
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 556 LPNLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISEL-------GNYFEIESQLRL 606
           L NL  L++S N +   +  ++     L+ LD+  N ++ L       G  + ++    L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 607 TYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
              +  SN   E+          ++ + L  N ++ +    F  + +L  ++L  N + +
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNLVDLDTVTCK 723
           + +        P+ +N+ +  +  NPF C C ++ W  ++    E +           C 
Sbjct: 599 VEKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNW--INETHTNIPELSSHYLCN 652

Query: 724 LLYNRANPAIL-LKEAHSNQFLCEYET 749
              +     +     +        +  
Sbjct: 653 TPPHYHGFPVRLFDTSSCKDSAHHHHH 679

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  279 bits (717), Expect = 4e-81
 Identities = 129/507 (25%), Positives = 206/507 (40%), Gaps = 39/507 (7%)

Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
           S    + +  KL+ V     +N         + VL+L++N    LPA  F+R S+L  L 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTN---------ITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 252 LQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPG 311
           +  N ++ L       L  L VLNL  N L  +  + F    +L E++L +NSI  +   
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 312 IFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL--YRL 369
            F     LI LDLS+N L+       T   L  L  L ++ NK+  L S          L
Sbjct: 116 PFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL---DSLTALSVLSLDNNE 426
           + L L +NQI+      F ++  L  L ++N +L    +  L    + T++  LSL N++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 427 LEYIEENALKN--STSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLN 483
           L             T+L    L+ N L  +       L  L+   L  N I  + + SL+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 484 SLHQLAGLRLTEN---------NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
            L  +  L L  +         ++  I    F+ L  L  LN+  N I  +++  F    
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 535 NLVAIRLDGNYL---TDIGGLFPKLPN--LVWLNISENLLEWFDYALIP--ADLQWLDIH 587
           NL  + L  ++    T     F  L +  L  LN+++N +   +         L+ LD+ 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 588 GNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYT 645
            N+I +     E      +     S NK  +LT N+     S++ L L    +  V    
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 646 FFMK--PNLTRVDLVGNRLKNINQTAL 670
              +   NLT +DL  N + NIN   L
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (690), Expect = 2e-77
 Identities = 112/487 (22%), Positives = 208/487 (42%), Gaps = 33/487 (6%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
           +C ++  V D S+     +P +     + +  L L  N L  L        + LT L++ 
Sbjct: 1   KCTVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N +  + PEL  +   LK + LQ+N ++ L+   F   T L  L L +N + +  +   
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNN 115

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSN--LHT 395
            F     L+ L++++N ++         L  LQ L L NN+I+++        +N  L  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK---NSTSLQDFHLNGNKLT 452
           L +S+N++K        ++  L  L L+N +L       L     +TS+++  L+ ++L+
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 453 EI-PKVLRNLH--SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
                    L   +L  LDL  N +  + N S   L QL    L  NNI ++       L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 510 SVLTILNLASN---------KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL 559
             +  LNL  +          + K++  +F     L  + ++ N +  I   +F  L NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 560 VWLNISENLLEWFD------YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
            +L++S +             +L  + L  L++  N+IS++ +         L   D   
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHLEVLDLGL 414

Query: 614 NKLT-ELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
           N++  ELTG       ++  ++L+ N   ++   +F + P+L R+ L    LKN++ +  
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 671 RISPLPS 677
              PL +
Sbjct: 475 PFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  130 bits (329), Expect = 4e-31
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 8/210 (3%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
               L+   ++ L ++ ++ + + K   L+  SF  +  L+ L LR      +  ++D S
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR-RV---ALKNVDSS 472

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
            + F   L++L  LDLS N+I  + D +   L+ L  L+L  N L+ +   +        
Sbjct: 473 PSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 219 CGI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
                +L +L+L +N FD +P E F  L  L+ + L  N L  L     +   SL  LNL
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 277 SVNNLVNIPPELFNQS-RDLKEVYLQNNSI 305
             N + ++  ++F  + R+L E+ ++ N  
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 2e-21
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 773 CTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829
           CT  H+V       DCS      +L   P  +P + T L L  N++  + + +F    +L
Sbjct: 2   CTVSHEV------ADCS----HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQL 51

Query: 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889
             L +  + +  +  +    L  L +L L  N L+++    F    NL EL+L  N I  
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 890 ISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSN 931
           I N  F+   +L  L L HN ++S        L + +Q + L++N
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 2e-19
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT--------FNGLKELIILR 857
           T L L  N I  +      G +KL+IL L  +++  +              GL  L IL 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--- 914
           L+ N   EI    F+ L  L+ + L  N +  +    F +   LK L L  N ITS    
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 915 AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI-SQIRCMT 964
                   +  + +  NP+ C C+    F +++  + +++ ++ S   C T
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 8e-17
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N +  +   +F     L  L L S+ ++ I N  F   K LI L L  N L+ 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTF--LSLTHLKVLQLDHNRITSF--AVWHLSS 921
            +     +LENL+EL L  NKI  + +      + + LK L+L  N+I  F    +H   
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 922 QIQSITLTSNPWSCD 936
           ++  + L +      
Sbjct: 196 RLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 1e-15
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           TEL+L  N I  + ++ F+ +K L  L L+ + + +    T   L+ L  L L +N++  
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 866 IRGYEFERLEN--LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--- 920
           ++  E +   N  L++L L  N+I   S   F ++  L  L L++ ++       L    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 921 --SQIQSITLTSN 931
             + I++++L+++
Sbjct: 220 ANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 1e-14
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 806 TELYLDGNRI-PVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
             L L  N I   +    + G + +  ++L+ +    +   +F  +  L  L L    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 865 EIRGY--EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
            +      F+ L NL  L L  N I  I++     L  L++L L HN +   
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 2e-14
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 806 TELYLDGNR--IPVVGSHSFIG--RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
             L L  +   +  + + +F+      L IL L  + +  I +  F+ L  L +L L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 862 RLT-EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
            +  E+ G E+  LEN+ E+YL YNK + ++  +F  +  L+ L L    + + 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 1e-13
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN---- 861
           T L L  N + VVG+ SF    +L+  FL  ++++ + + + +GL  +  L L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 862 -----RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
                 L +I  + F+ L+ L  L ++ N I  I +  F  L +LK L L ++  +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 3e-13
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 806 TELYLDGNRIPVVGSHSF---IGRKKLQILFLNSSHVETIHNKTFNGLK--ELIILRLDD 860
             L+L+  ++    +      +    ++ L L++S + T  N TF GLK   L +L L  
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
           N L  +    F  L  L   +L+YN I ++ + +   L +++ L L  +   
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  367 bits (944), Expect = e-113
 Identities = 124/591 (20%), Positives = 213/591 (36%), Gaps = 56/591 (9%)

Query: 151 STMSLDISHNVFTD-------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           ST  L+ S NV           L +L  LDL+   I+ + +  F     L  L LT N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH 263
             +A  + S          L+ L        S+          L+ LYL  N ++ +   
Sbjct: 94  IFMAETALSGP------KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL--QNNSINVLAPGIFNVLTQLIV 321
                  L VL+   N +  +  E  +  +    + L    N I  + PG F+       
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQS 206

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR--LQVLHLENNQI 379
           L+    +           S +  L +          +  ++F+ L    ++ ++L+ +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
            +I  NTF   S L  L ++   L  +  + L  L+ L  L L  N+ E + + +  N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 440 SLQDFHLNGNKL--TEIPKVLRNLHSLKTLDLGDNLIT--EINNLSLNSLHQLAGLRLTE 495
           SL    + GN          L NL +L+ LDL  + I   +  NL L +L  L  L L+ 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 496 NNISNISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIG-GLF 553
           N   ++    F++   L +L+LA  +++  +A   F N   L  + L  + L      LF
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 554 PKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
             LP L  LN+  N     +       LQ L                    RL     S 
Sbjct: 446 DGLPALQHLNLQGNHFPKGNI-QKTNSLQTLG-------------------RLEILVLSF 485

Query: 614 NKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
             L+ +  +A      + ++ L++N ++            +  ++L  N +  I  + L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 672 ISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
           I             + +NP  C C+  +   +    + N   L D +   C
Sbjct: 545 ILS-----QQRTINLRQNPLDCTCSNIYFLEWY---KENMQKLEDTEDTLC 587

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  276 bits (707), Expect = 2e-80
 Identities = 99/518 (19%), Positives = 194/518 (37%), Gaps = 71/518 (13%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           SS+          L+ L +    I ++         KLK                     
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV-------------------- 157

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLS--YLNLTQNKLSNVATFSFSNYDTAR 218
                      LD   N+I  L       LQ  +   LNL  N ++ +   +F +     
Sbjct: 158 -----------LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS----- 201

Query: 219 CGINLRVLDLSNNSF--DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL--NSLTVL 274
                + L+                S +  L     +      ++    +GL   S+  +
Sbjct: 202 --AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
           NL  +   NI    F+    L+E+ L    ++ L  G+   L+ L  L LS N+     +
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFEN--L 316

Query: 335 NAATFSGLHRLVVLNIAYN-KMNKLDSSIFKDLYRLQVLHLENNQIESIH--RNTFASLS 391
              + S    L  L+I  N K  +L +   ++L  L+ L L ++ IE+         +LS
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNK 450
           +L +L +S N+   +++ +      L +L L    L+  + ++  +N   L+  +L+ + 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR---LTENNISNISKGVF 506
           L    + +   L +L+ L+L  N   + N    NSL  L  L    L+  ++S+I +  F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNIS 565
             L ++  ++L+ N++         +   +  + L  N+++ I   L P L     +N+ 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555

Query: 566 ENLLE------WFDYALIPADLQWLDIHGNQISELGNY 597
           +N L+      +F        L+W   +  ++ +  + 
Sbjct: 556 QNPLDCTCSNIYF--------LEWYKENMQKLEDTEDT 585

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  235 bits (601), Expect = 3e-66
 Identities = 94/449 (20%), Positives = 167/449 (37%), Gaps = 60/449 (13%)

Query: 101 SSLSPGSFQTLIDLK--DLSVEFCKIGNLSAGSFRGLRKLKTLTLR------------TH 146
             LS     +L       L++    I  +  G+F      ++L                +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKN 224

Query: 147 NTDWSTMSLDISHNVFTD---------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLN 197
           +T  S            D            S+ES++L  +  + +    F     L  L+
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 198 LTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-I 256
           LT   LS + +              L+ L LS N F++L     S    L  L ++GN  
Sbjct: 285 LTATHLSELPSGLVGLS-------TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 257 LTFLADHALDGLNSLTVLNLSVNNLVNIP--PELFNQSRDLKEVYLQNNSINVLAPGIFN 314
              L    L+ L +L  L+LS +++               L+ + L  N    L    F 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL 374
              QL +LDL+   L  +   +  F  LH L VLN++++ ++     +F  L  LQ L+L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 375 ENNQIESIHR---NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           + N     +    N+  +L  L  L++S   L  I+ ++  SL  ++ + L +N L    
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 432 ENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDN------------------ 472
             AL +   +   +L  N ++ I P +L  L   +T++L  N                  
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575

Query: 473 --LITEINNLSLNSLHQLAGLRLTENNIS 499
              + +  +    +   L G+RL++  +S
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 1e-36
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 13/282 (4%)

Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
           T    N  L  I     +S      L    N L  I+        +L    L   ++  I
Sbjct: 16  TYNCENLGLNEIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 455 -PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
                ++ H L TL L  N +  +   +L+    L  L   +  IS+I          L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLNISENLLE 570
            L L SN I  ++         L  +    N +  +       L     + LN++ N + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 571 WFDYALIPAD-LQWLDIHGNQIS-ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH-- 626
             +     +   Q L+  G Q    +    +  +   L           +++        
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 627 --SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
             SVE++ L  +    +   TF     L  +DL    L  + 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (314), Expect = 2e-29
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 10/207 (4%)

Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
            S       + L  L+ L++ + +  +L   +F+   +L+ L L         + +  + 
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA-FT----RLKVKDAQ 418

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
           + F + L  L+ L+LS + +    + +F  L +L +LNL  N          ++  T   
Sbjct: 419 SPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG- 476

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
              L +L LS     S+    F+ L  +  + L  N LT  +  AL  L  +  LNL+ N
Sbjct: 477 --RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSIN 306
           ++  I P L       + + L+ N ++
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 1e-25
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 5/166 (3%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           T  ++  C           +C   G  N++P  +P     L    N +P + + +F    
Sbjct: 1   TTSSDQKCIEKE--VNKTYNCENLGL-NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI 57

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L  L L    +  IH  TF     L  L L  N L  +        + L+ L+     I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
             I      +   L+ L L  N I+S  +       +++ +   +N
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 3e-22
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS---SHVETIHNKTFNGLKELIILRLDDNR 862
             L L  + + +     F G   LQ L L              +   L  L IL L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLS 920
           L+ I  + F  L+ +  + L +N++   S      L  +  L L  N I+    ++  + 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 921 SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSC 980
           SQ ++I L  NP  C C     F ++ + +   + D     C     +    +  V  SC
Sbjct: 547 SQQRTINLRQNPLDCTCS-NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSC 605

Query: 981 N 981
           +
Sbjct: 606 S 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 9e-19
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
            +   +   FQ L  LK L++    +   S   F GL  L+ L L+  N        +I 
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ-GN---HFPKGNIQ 467

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
                  L  LE L LS   + ++    F  L+ +++++L+ N+L++ +  + S+     
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH----- 522

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
             +    L+L++N    +       LS+ + + L+ N L      +      L     ++
Sbjct: 523 --LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC--TCSNIYF--LEWYKENM 576

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
             L +    L      L+ V L + +++
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 4e-16
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N +  +   +  G K L+ LF   + + +I     +  K L  L L  N ++ 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD--HNRITSF-AVWHLSSQ 922
           I+  +    E L+ L  Q N I Y+S     SL     L L+   N I         S+ 
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 923 IQSITLTSN 931
            QS+     
Sbjct: 204 FQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 1e-15
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS-SHVETIHNKTFNGLKELIILRLDDNRLT 864
            +L L  N+   +   S      L  L +   +    +       L+ L  L L  + + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 865 --EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT---SFAVWHL 919
             +    +   L +L+ L L YN+ + +    F     L++L L   R+    + + +  
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 920 SSQIQSITLTSN 931
              ++ + L+ +
Sbjct: 424 LHLLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 2e-12
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKK--LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
                +      +    F G  +  ++ + L   +   I + TF+    L  L L    L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR----ITSFAVWHL 919
           +E+       L  L++L L  NK   +   +  +   L  L +  N     + +  + +L
Sbjct: 291 SELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 920 SSQIQSITLTSN 931
            + ++ + L+ +
Sbjct: 350 EN-LRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSH--VETIHNKTFNGLK-ELIILRLDDNR 862
             L    N I  +        ++   L LN +   +  I    F+    + +      N 
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTF--LSLTHLKVLQLDHNRITSF--AVWH 918
           L   +G +   +++L     +      IS   F  L    ++ + L  +   +     +H
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 919 LSSQIQSITLTSN 931
             S +Q + LT+ 
Sbjct: 276 CFSGLQELDLTAT 288

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  313 bits (805), Expect = 7e-94
 Identities = 120/538 (22%), Positives = 197/538 (36%), Gaps = 45/538 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
             L   SF    +L+ L +  C+I  +   ++ GL  L  L L T N   S      S  
Sbjct: 45  KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL-TGNPIQS-----FSPG 98

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV---ATFSFSNYDTA 217
            F+  L SLE+L      + +L       L +L  LN+  N + +    A FS       
Sbjct: 99  SFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT---- 153

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRL----QELYLQGNILTFLADHALDGLNSLTV 273
               NL  +DLS N   ++       L         L +  N + F+ D A  G+  L  
Sbjct: 154 ----NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 208

Query: 274 LNLSVNNL-VNIPPELFNQSRDLKEVYL------QNNSINVLAPGIFNVLTQLIVLDLSN 326
           L L  N    NI          L    L         ++ +  P I   L  + + +   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
               +   +   F  L  +  +++A   +  L+       ++ Q L +   Q++      
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQF---P 323

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN--STSLQDF 444
              L  L +L ++ NK          +L +LS L L  N L +    +  +  + SL+  
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISNISK 503
            L+ N    +      L  L+ LD   + +  +   S   SL +L  L ++  N      
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 504 GVFEKLSVLTILNLASNKIQKV-EAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVW 561
           G+F  L+ L  L +A N  +    +  F N +NL  + L    L  I  G+F  L  L  
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 562 LNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT 617
           LN+S N L + D +       L  LD   N+I              L +F+ ++N + 
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL-QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  286 bits (735), Expect = 3e-84
 Identities = 108/565 (19%), Positives = 196/565 (34%), Gaps = 76/565 (13%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           + + +DLS N    L +  FS  S LQ L L    +  + D A  GL+ L+ L L+ N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
            +  P  F+    L+ +      +  L       L  L  L++++N +    +  A FS 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSN 151

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDL----YRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
           L  LV ++++YN +  +  +  + L         L +  N I+ I    F  +  LH L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

Query: 398 MSNNKLKR-IESNSLDSLTALSVLSL------DNNELEYIEENALKNSTSLQ--DFHLNG 448
           +  N     I    L +L  L V  L      D   LE  E + ++    +   +F L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 449 NKLTEI-PKVLRNLHSLKTLDLGDNLITE-------------------INNLSLNSLHQL 488
                        L ++  + L    I                     +       L  L
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN--NSNLVAIRLDGNYL 546
             L LT N  S   K     L  L+ L+L+ N +      ++ +   ++L  + L  N  
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWL---------------------- 584
             +   F  L  L  L+   + L+          L+ L                      
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 585 -----DIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL 637
                 + GN   +        +   LT+ D S  +L +++       H ++ L +++N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNM 697
           +  +    +    +L+ +D   NR++                ++  F +  N   C C  
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK-----SLAFFNLTNNSVACICEH 563

Query: 698 QWLQSYSVNKERNKPNLVDLDTVTC 722
           Q    +    +  K  LV+++ +TC
Sbjct: 564 QKFLQWV---KEQKQFLVNVEQMTC 585

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (538), Expect = 4e-58
 Identities = 87/413 (21%), Positives = 147/413 (35%), Gaps = 36/413 (8%)

Query: 98  FFQSSLSPGSFQTLIDLKDLS------VEFCKIGNLSAGSFRGLRKLKTLTLR-THNTDW 150
           F  S++     Q L  L           +   +         GL  +     R T+    
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-- 272

Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
                      F   L ++ ++ L+  SI  L D           L++ + +L    T  
Sbjct: 273 ---DFSDDIVKFHC-LANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFPTLD 326

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD--GL 268
                       L+ L L+ N            L  L  L L  N L+F    +    G 
Sbjct: 327 LPF---------LKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNN 327
           NSL  L+LS  N   I    F    +L+ +  Q++++  +     F  L +L+ LD+S  
Sbjct: 376 NSLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
                      F GL  L  L +A N   +   S++F +   L  L L   Q+E I    
Sbjct: 435 NTKI--DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
           F +L  L  L MS+N L  ++S+  + L +LS L    N +E  +        SL  F+L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
             N +  I     +   L+ +      +  +  ++  +  ++    + + N S
Sbjct: 553 TNNSVACIC---EHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS 602

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (412), Expect = 8e-42
 Identities = 91/509 (17%), Positives = 162/509 (31%), Gaps = 62/509 (12%)

Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
           +     KL+++P  +    S K +DL  N +  + + S ++  +L  L L+   I  I  
Sbjct: 16  YQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWL 562
             +  L  L+ L L  N IQ    G+F   ++L  +      L  +      +L  L  L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 563 NISENLLEWFDYALIPAD---LQWLDIHGNQISEL-GNYFEIESQLR--LTYFDASSNKL 616
           N++ N +         ++   L  +D+  N I  +  N  +   +        D S N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 617 TELTGNAIPH-SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
             +   A     +  L L  N  S     T                L  ++   L +   
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL------------QNLAGLHVHRLILGEF 241

Query: 676 PSHKNIPDFYIGENPFQCDCNMQWL-------QSYSVNKERNKPNLVDLDTVTCKLLYNR 728
              +N+  F        CD  +           S  + K     N+  +      L    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS-----LAGVS 296

Query: 729 ANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDC 788
                 +K                          C  +     +      ++   N    
Sbjct: 297 ------IKYLEDVPKH--------FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 789 STGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSF--IGRKKLQILFLNSSHVETIHNKT 846
           S   +     P +    + L L  N +   G  S+  +G   L+ L L+ +    I +  
Sbjct: 343 S---FKKVALPSL----SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSAN 394

Query: 847 FNGLKELIILRLDDNRLTEI-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQ 905
           F GL+EL  L    + L  +     F  LE L  L + Y       +  FL LT L  L+
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 906 LDHNRITSF---AVWHLSSQIQSITLTSN 931
           +  N         V+  ++ +  + L+  
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (256), Expect = 2e-22
 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIG 825
             N C              C     D +L   P  IP     + L  N + ++ S+SF  
Sbjct: 3   SLNPCIEVV----PNITYQCM----DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN 54

Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
             +LQ L L+   +ETI +K ++GL  L  L L  N +       F  L +L  L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           K+  + +     L  LK L + HN I S 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 7e-17
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 806 TELYLDGNRI-PVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
             L + GN       S+ F     L  L L+   +E I    F+ L  L +L +  N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQ 924
            +    + +L +L  L   +N+I             L    L +                
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN---------------- 554

Query: 925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
                 N  +C C+  +KF  +++  +  + ++ Q+ C T
Sbjct: 555 ------NSVACICE-HQKFLQWVKEQKQFLVNVEQMTCAT 587

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 5e-14
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           + L L GN I      SF G   L+ L    + + ++ +     L  L  L +  N +  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK----VLQLDHNRITSFAVWHLS 920
                 F  L NL  + L YN I  I+      L         L +  N I         
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 921 S-QIQSITLTSNPWS 934
             ++  +TL  N  S
Sbjct: 203 GIKLHELTLRGNFNS 217

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  304 bits (781), Expect = 3e-91
 Identities = 96/529 (18%), Positives = 189/529 (35%), Gaps = 47/529 (8%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
            ++ LDLS N    +        + LQ L L+ + +  +   A   L SL  L+LS N+L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
            ++    F     LK + L  N    L    +F  LT L  L + N E   E +    F+
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-IRRIDFA 145

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
           GL  L  L I    +    S   K +  +  L L  ++   +       LS++  L + +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF----------HLNGNK 450
             L R + + L      S +         + + +      L  +              N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 451 LTEIPKV-------LRNLH--SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI 501
           L +           L  +   +++ L +    +    +   + L ++  + +  + +  +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 502 SKGVFEKLSVLTILNLASNKIQKVEAGT---FDNNSNLVAIRLDGNYLTDI---GGLFPK 555
                + L  L  L+L+ N + +             +L  + L  N+L  +   G +   
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 556 LPNLVWLNISENLLEWFDYALI-PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
           L NL  L+IS N       +   P  +++L++    I  +           L   D S+N
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNN 441

Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
            L   +       ++ L+++ N +  +   + F  P L  + +  N+LK++         
Sbjct: 442 NLDSFSLF--LPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 675 LPSHKNIPDFYIGENPFQCDCNMQ-WLQSYSVNKERNKPNLVDLDTVTC 722
                ++   ++  NP+ C C    +L  +      NK +  +  +  C
Sbjct: 498 -----SLQKIWLHTNPWDCSCPRIDYLSRW-----LNKNSQKEQGSAKC 536

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  233 bits (595), Expect = 5e-66
 Identities = 84/475 (17%), Positives = 178/475 (37%), Gaps = 38/475 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
           +++   +F +L  L+ L +    + +LS+  F  L  LK L L   N          +  
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GN------PYQTLGV 115

Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
                 L +L++L +  + +   +    F  L SL+ L +    L N  + S  +     
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--- 172

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
              ++  L L  +    L       LS ++ L L+   L       L      + +    
Sbjct: 173 ---DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
                +  E FN+   L    L+ + +          L  L   + S +++    V+   
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFD----DCTLNGLGDFNPSESDV----VSELG 281

Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
                 +  L+I    +    S+++  L +++ + +EN+++  +  +    L +L  L +
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 399 SNNKLKRI---ESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHLNGNKLTE 453
           S N +       S    +  +L  L L  N L  +++    L    +L    ++ N    
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401

Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
           +P   +    ++ L+L    I  +      +L     L ++ NN+ + S      L  L 
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNNNLDSFSLF----LPRLQ 454

Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
            L ++ NK++ +   +      L+ +++  N L  +  G+F +L +L  + +  N
Sbjct: 455 ELYISRNKLKTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (408), Expect = 1e-41
 Identities = 63/320 (19%), Positives = 111/320 (34%), Gaps = 34/320 (10%)

Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL---- 155
            +               +     +   L+  SF  L KL    L     ++   +L    
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 156 -------DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
                  D+   +   E  ++  L +    ++     ++  L+ +  + +  +K+  V  
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEG---FSRLSRLQELYLQGNILTFL--ADH 263
               +        +L  LDLS N       +          LQ L L  N L  +     
Sbjct: 328 SFSQHLK------SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
            L  L +LT L++S N    +P         ++ + L +  I V+   I      L VLD
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLD 437

Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
           +SNN L            L RL  L I+ NK+  L  +       L V+ +  NQ++S+ 
Sbjct: 438 VSNNNLDS------FSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVP 489

Query: 384 RNTFASLSNLHTLIMSNNKL 403
              F  L++L  + +  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  150 bits (380), Expect = 5e-38
 Identities = 82/476 (17%), Positives = 146/476 (30%), Gaps = 92/476 (19%)

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
                 T IP  L    ++K+LDL  N IT I +  L +   L  L L  + I+ I    
Sbjct: 12  GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLN 563
           F  L  L  L+L+ N +  + +  F   S+L  + L GN    +G   LFP L NL  L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
           I                           SE+                        LT   
Sbjct: 130 IGNV---------------------ETFSEI-----------------RRIDFAGLT--- 148

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
              S+  L +    +   Q  +     ++  + L  +    + +    I           
Sbjct: 149 ---SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS--------- 196

Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQF 743
                       ++++L+    N  R + + + +D V+  +       ++L     S   
Sbjct: 197 ------------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT--DESFNE 242

Query: 744 LCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPM 803
           L +       L      D           CT      +  +  D  +     +       
Sbjct: 243 LLKLLRYILELSEVEFDD-----------CTLNGLGDFNPSESDVVSELGKVETV----- 286

Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
               L++    +    S  +   +K++ + + +S V  +       LK L  L L +N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 864 TEIRGYE---FERLENLRELYLQYNKIIYISN--RTFLSLTHLKVLQLDHNRITSF 914
            E             +L+ L L  N +  +       L+L +L  L +  N     
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 2e-32
 Identities = 48/331 (14%), Positives = 112/331 (33%), Gaps = 50/331 (15%)

Query: 389 SLSNLHTLIMSNNKLK---------------------RIESNSLDSLTALSVLSLDNNEL 427
           S          +                          I    L +   L VL L ++ +
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEI-NNLSLNSL 485
             IE +A  +  SL+   L+ N L+ +       L SLK L+L  N    +       +L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 486 HQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             L  LR+      S I +  F  L+ L  L + +  ++  ++ +  +  ++  + L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 545 YLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPAD-----LQWLDIHGNQISELGNYF 598
               +       L ++ +L + +  L  F ++ +P D     ++ L   G+ +++    F
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE--SF 240

Query: 599 EIESQLRLTYFDASSNKLTELTGNAIPH------------------SVENLFLTNNLISK 640
               +L     + S  +  + T N +                    ++  L +    +  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
                + +   + R+ +  +++  +  +  +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 3e-31
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 22/232 (9%)

Query: 98  FFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDI 157
           F+        +  L  +K ++VE  K+  +     + L+ L+ L L + N     +   +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL-SEN---LMVEEYL 351

Query: 158 SHNVFTDELQSLESLDLSMNSIWTLPDA--IFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
            ++       SL++L LS N + ++     I   L++L+ L++++N             D
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------PMPD 404

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
           + +    +R L+LS+     +          L+ L +  N L   +      L  L  L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFSLF----LPRLQELY 457

Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           +S N L  +P         L  + +  N +  +  GIF+ LT L  + L  N
Sbjct: 458 ISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (296), Expect = 2e-27
 Identities = 79/583 (13%), Positives = 161/583 (27%), Gaps = 143/583 (24%)

Query: 463 SLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
           +    D      T I + L+      +  L L+ N I+ I  G     + L +L L S++
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
           I  +E   F +  +L  + L  N+L+ +    F  L +L                     
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL--------------------- 100

Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
            ++L++ GN    LG      +   L      +                         S+
Sbjct: 101 -KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV---------------------ETFSE 138

Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLP-------SHKNIPDFYIGENPFQC 693
           ++   F    +L  +++    L+N    +  +  +                 + E     
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESAF--LLEIFADI 194

Query: 694 DCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAP 753
             ++++L+    N  R + + + +D V+  +       ++L  E+ +             
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 754 LCHCCDF------DACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT- 806
                D       D    E    +       V+     I      Y       +      
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI---PQFYLFYDLSTVYSLLEK 311

Query: 807 --ELYLDGNRIPVVGSHSFIGRKKLQIL-----------------FLNSSHVETI---HN 844
              + ++ +++ +V        K L+ L                       ++T+    N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 845 K---------TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
                         LK L  L +  N    +     +  E +R L L    I  +     
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 896 LSLTH-----------------LKVLQLDHNRITSFAVWHLSSQ---------------- 922
            +L                   L+ L +  N++ +     L                   
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490

Query: 923 --------IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
                   +Q I L +NPW C C   +    +L ++       
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 533

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 6e-19
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           +C  +  C           D  +  +   +P  +      L L  N+I  +G        
Sbjct: 3   SCDASGVC-----------DGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA 50

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            LQ+L L SS + TI    F  L  L  L L DN L+ +    F  L +L+ L L  N  
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 888 IYISNR-TFLSLTHLKVLQLDHNRITS 913
             +     F +LT+L+ L++ +    S
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFS 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  300 bits (770), Expect = 5e-89
 Identities = 123/599 (20%), Positives = 218/599 (36%), Gaps = 71/599 (11%)

Query: 151 STMSLDISHNVFTDE-------LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           ST +LD+S N               L+ LDLS   I T+ D  +  L  LS L LT N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFL-AD 262
            ++A  +FS         +L+ L     +  SL       L  L+EL +  N++      
Sbjct: 89  QSLALGAFSG------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLK----EVYLQNNSINVLAPGIFNVLTQ 318
                L +L  L+LS N + +I          +      + L  N +N + PG F    +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR 201

Query: 319 LIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK------MNKLDSSIFKDLYRLQVL 372
           L  L L NN  +   V      GL  L V  +   +      + K D S  + L  L + 
Sbjct: 202 LHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 373 HLENNQIESIHRN---TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
                 ++    +    F  L+N+ +  + +  ++R++  S         L L N +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ 318

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
                LK+   L      G           +L SL+ LDL  N ++     S +      
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQS------ 368

Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
                               + L  L+L+ N +  + +  F     L  +    + L  +
Sbjct: 369 ----------------DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411

Query: 550 --GGLFPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLR 605
               +F  L NL++L+IS          +    + L+ L + GN   E            
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 606 LTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
           LT+ D S  +L +L+  A     S++ L +++N    +  + +    +L  +D   N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 664 NINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
              +  L+  P     ++    + +N F C C  Q    +  +    +  LV+++ + C
Sbjct: 532 TSKKQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIKD---QRQLLVEVERMEC 583

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  213 bits (544), Expect = 7e-59
 Identities = 88/439 (20%), Positives = 154/439 (35%), Gaps = 32/439 (7%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
            QS   P  F  L +L+ L +   KI ++     R L ++  L L          SLD+S
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL----------SLDLS 185

Query: 159 HNVFTD------ELQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211
            N          +   L  L L  N     +       L  L    L   +  N      
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLP---AEGFSRLSRLQELYLQGNILTFLADHALDGL 268
            +        NL + +      D       + F+ L+ +    L    +  + D      
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
                L L        P       + L     +  +           L  L  LDLS N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNG 358

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES-IHRNTF 387
           L+ +   + +  G   L  L++++N +  + S+ F  L +L+ L  +++ ++     + F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL-EYIEENALKNSTSLQDFHL 446
            SL NL  L +S+   +   +   + L++L VL +  N   E    +      +L    L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 447 NGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
           +  +L ++ P    +L SL+ L++  N    ++      L+ L  L  + N+I    K  
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 506 FEKL-SVLTILNLASNKIQ 523
            +   S L  LNL  N   
Sbjct: 538 LQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (477), Expect = 4e-50
 Identities = 91/430 (21%), Positives = 160/430 (37%), Gaps = 50/430 (11%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
           + + PG+F+  I L  L++       N+     +GL  L+   L                
Sbjct: 190 NFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAI---FCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
           +     L +L   +  +  +    D I   F  L ++S  +L    +  V  FS++    
Sbjct: 249 SALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--- 304

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSR-------------------LSRLQELYLQGNIL 257
                  + L+L N  F   P                         L  L+ L L  N L
Sbjct: 305 -----GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 258 TF--LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFN 314
           +F      +  G  SL  L+LS N ++ +          L+ +  Q++++  ++   +F 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLH 373
            L  LI LD+S+            F+GL  L VL +A N   +     IF +L  L  L 
Sbjct: 419 SLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
           L   Q+E +    F SLS+L  L MS+N    +++     L +L VL    N +   ++ 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 434 ALKNS-TSLQDFHLNGNKLT---EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
            L++  +SL   +L  N      E    L+ +   + L +       +  +   +     
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE------VERMECATPSDKQ 590

Query: 490 GLRLTENNIS 499
           G+ +   NI+
Sbjct: 591 GMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 6e-22
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 5/163 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSH-VETIHNKTFNGLKELIILRLDDNRLT 864
             L +      V  +  F G   L++L +  +   E      F  L+ L  L L   +L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
           ++    F  L +L+ L + +N    +    +  L  L+VL    N I +     + H  S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 922 QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +  + LT N ++C C+    F  +++  R  + ++ ++ C T
Sbjct: 544 SLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERMECAT 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 1e-18
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 785 VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
              C    +  ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI +
Sbjct: 11  TYQCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
             +  L  L  L L  N +  +    F  L +L++L      +  + N     L  LK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 905 QLDHNRITSF 914
            + HN I SF
Sbjct: 130 NVAHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.7 bits (171), Expect = 3e-12
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           + L L GN I  +   +F G   LQ L    +++ ++ N     LK L  L +  N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV----LQLDHNRITSFAVWHLS 920
                 F  L NL  L L  NKI  I       L  + +    L L  N +         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 921 S-QIQSITLTSNPWS 934
             ++  +TL +N  S
Sbjct: 199 EIRLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT- 864
             L L   +     +      K+L        +       +   L  L  L L  N L+ 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSF 361

Query: 865 -EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
                       +L+ L L +N +I +S+  FL L  L+ L   H+ +  
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 809 YLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK---TFNGLKELIILRLDDNRLTE 865
           + +   +      +  G   L I     ++++   +     FN L  +    L    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
           ++  +F      + L L   K          SL  L           S  
Sbjct: 297 VK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 24/134 (17%)

Query: 820 SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFER------ 873
              F     +    L S  +E + + ++        L L + +  +    + +       
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 874 -------------LENLRELYLQYNKI--IYISNRTFLSLTHLKVLQLDHNRITSF-AVW 917
                        L +L  L L  N +      +++    T LK L L  N + +  + +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 918 HLSSQIQSITLTSN 931
               Q++ +    +
Sbjct: 393 LGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  283 bits (727), Expect = 1e-83
 Identities = 98/572 (17%), Positives = 189/572 (33%), Gaps = 79/572 (13%)

Query: 215 DTARCGINLRVLDLSNNSFDS---------------------LPAEGFSRLSRLQELYLQ 253
           +     +          +F                       L +  F     LQ L L 
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 254 GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
              +  + D A   L+ L+ L L+ N + ++    F+    L+++     ++  L     
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV-- 371
             L  L  L++++N +    +    FS L  L  L+++ NK+  +  +  + L+++ +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 372 --LHLENNQIESIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSL------ 422
             L L  N +  I    F  +  LH L + NN     +    +  L  L V  L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 423 DNNELEYIEENALKNSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEI- 477
           +   LE  +++AL+   +L         L     +I  +   L ++ +  L    I  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 478 ------------------NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
                                    L  L  L  T N   N        L  L  L+L+ 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSR 356

Query: 520 NKIQKVE--AGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
           N +      + +    ++L  + L  N +  +   F  L  L  L+   + L+      +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 578 ---PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLF-- 632
                +L +LDI         N         L     + N   E     I   + NL   
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 633 -LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF 691
            L+   + ++ P  F    +L  +++  N+LK++              ++   ++  NP+
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-----FDRLTSLQKIWLHTNPW 530

Query: 692 QCDCNMQ-WLQSYSVNKERNKPNLVDLDTVTC 722
            C C    +L  +      NK +  +  +  C
Sbjct: 531 DCSCPRIDYLSRWL-----NKNSQKEQGSAKC 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  258 bits (662), Expect = 8e-75
 Identities = 109/512 (21%), Positives = 189/512 (36%), Gaps = 41/512 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
             L   SF +  +L+ L +  C+I  +  G+++ L  L TL L T N       +  ++ 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL-TGN------PIQSLAL 93

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
             F   L SL+ L     ++ +L +     L++L  LN+  N +      SF   +    
Sbjct: 94  GAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-----SFKLPEYFSN 147

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQ----ELYLQGNILTFLADHALDGLNSLTVLN 275
             NL  LDLS+N   S+       L ++      L L  N + F+   A   +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 276 LSVNNL-VNIPPELFNQSRDLKEVYLQ------NNSINVLAPGIFNVLTQLIVLDLSNNE 328
           L  N   +N+          L+   L         ++          L  L + +     
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 329 LTEEWVN-AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
           L     +    F+ L  +   ++    + ++    +   +  Q L L N +         
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQF---PT 321

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE--ENALKNSTSLQDFH 445
             L +L  L  ++NK       S   L +L  L L  N L +      +   +TSL+   
Sbjct: 322 LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISNISKG 504
           L+ N +  +      L  L+ LD   + + +++  S   SL  L  L ++  +      G
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 505 VFEKLSVLTILNLASNKIQK-VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWL 562
           +F  LS L +L +A N  Q+      F    NL  + L    L  +    F  L +L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 563 NISENLLEWFDYALIPA--DLQWLDIHGNQIS 592
           N++ N L+     +      LQ + +H N   
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  227 bits (580), Expect = 7e-64
 Identities = 117/588 (19%), Positives = 197/588 (33%), Gaps = 72/588 (12%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
            +   L +S N L+ + S S  S   L VL L   E++ IE+ A ++ + L    L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEK 508
           +  +       L SL+ L   +  +  + N  +  L  L  L +  N I +      F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNL----VAIRLDGNYLTDIGGLFPKLPNLVWLNI 564
           L+ L  L+L+SNKIQ +          +    +++ L  N +  I     K   L  L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 565 SENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS-NKLTELTGNA 623
             N             L  L++H   +       E  ++  L  FD S+   L  LT   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLG------EFRNEGNLEKFDKSALEGLCNLTIE- 260

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
                E      +         F    N++   LV   ++ +                  
Sbjct: 261 -----EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------------------ 297

Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQF 743
                  F  +   Q L+     K    P L            N+   A    +  S +F
Sbjct: 298 -----KDFSYNFGWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 744 LCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPR 800
           L                D     ++    C+     +     +D S     N +      
Sbjct: 352 L----------------DLSRNGLSFKGCCSQSDFGTTSLKYLDLS----FNGVITMSSN 391

Query: 801 IP--MDATELYLDGNRIPVVGSHS-FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILR 857
                    L    + +  +   S F+  + L  L ++ +H     N  FNGL  L +L+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 858 LDDNRLTE-IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
           +  N   E      F  L NL  L L   ++  +S   F SL+ L+VL +  N++ S   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 917 WHLS--SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
                 + +Q I L +NPW C C   +    +L ++       ++   
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 559

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  202 bits (516), Expect = 2e-55
 Identities = 86/434 (19%), Positives = 152/434 (35%), Gaps = 47/434 (10%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
            QS   P  F  L +L+ L +   KI ++     R L ++  L L               
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--------------- 180

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTA 217
                       SLDLS+N +  +    F  +  L  L L  N  S NV           
Sbjct: 181 ------------SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD---HALDGLNSLTVL 274
                +     +  + +         L  L     +   L +  D      + L +++  
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
           +L    +  +    +N     + + L N             L  L  L  ++N+      
Sbjct: 288 SLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGG---- 338

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLD--SSIFKDLYRLQVLHLENNQIESIHRNTFASLSN 392
           NA +   L  L  L+++ N ++     S        L+ L L  N + ++  N F  L  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 397

Query: 393 LHTLIMSNNKLKRIESNS-LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
           L  L   ++ LK++   S   SL  L  L + +              +SL+   + GN  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 452 TEI--PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
            E   P +   L +L  LDL    + +++  + NSL  L  L +  N + ++  G+F++L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 510 SVLTILNLASNKIQ 523
           + L  + L +N   
Sbjct: 518 TSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 2e-22
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
               C    +  ++P  +P     L L  N +  +GS+SF    +LQ+L L+   ++TI 
Sbjct: 10  ITYQCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
           +  +  L  L  L L  N +  +    F  L +L++L      +  + N     L  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 904 LQLDHNRITSFAVWHL---SSQIQSITLTSNPWSC 935
           L + HN I SF +       + ++ + L+SN    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  273 bits (701), Expect = 4e-81
 Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 8/331 (2%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
            C    R +      F ++P    +     + L L  N +  L          L  L L+
Sbjct: 8   ECSAQDRAVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELN 64

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N +  + P  FN   +L+ + L++N + ++  G+F  L+ L  LD+S N++    +   
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDY 122

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
            F  L+ L  L +  N +  +    F  L  L+ L LE   + SI     + L  L  L 
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 398 MSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEIP- 455
           + +  +  I   S   L  L VL +     L+ +  N L    +L    +    LT +P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPY 241

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
             +R+L  L+ L+L  N I+ I    L+ L +L  ++L    ++ +    F  L+ L +L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
           N++ N++  +E   F +  NL  + LD N L
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  247 bits (633), Expect = 6e-72
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 9/306 (2%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
               LDL  N I TL    F     L  L L +N +S V   +F+N        NLR L 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF------NLRTLG 86

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
           L +N    +P   F+ LS L +L +  N +  L D+    L +L  L +  N+LV I   
Sbjct: 87  LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
            F+    L+++ L+  ++  +     + L  LIVL L +  +    +   +F  L+RL V
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA--IRDYSFKRLYRLKV 204

Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
           L I++       +        L  L + +  + ++       L  L  L +S N +  IE
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKT 466
            + L  L  L  + L   +L  +E  A +    L+  +++GN+LT + + V  ++ +L+T
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 467 LDLGDN 472
           L L  N
Sbjct: 325 LILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  236 bits (604), Expect = 5e-68
 Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 39/339 (11%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           + + L +   +I  L+   F                                    LE L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPH-------------------------------LEEL 61

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
           +L+ N +  +    F  L +L  L L  N+L  +    F+         NL  LD+S N 
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------NLTKLDISENK 115

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
              L    F  L  L+ L +  N L +++  A  GLNSL  L L   NL +IP E  +  
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY 352
             L  + L++ +IN +    F  L +L VL++S+    +  +      GL+ L  L+I +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLN-LTSLSITH 233

Query: 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLD 412
             +  +     + L  L+ L+L  N I +I  +    L  L  + +   +L  +E  +  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
            L  L VL++  N+L  +EE+   +  +L+   L+ N L
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  227 bits (581), Expect = 6e-65
 Identities = 93/488 (19%), Positives = 166/488 (34%), Gaps = 102/488 (20%)

Query: 292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351
           S   + V         +  GI    T+  +LDL  N +    +N   F+    L  L + 
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKT--LNQDEFASFPHLEELELN 64

Query: 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
            N ++ ++   F +L+ L+ L L +N+++ I    F  LSNL  L +S NK+  +     
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLG 470
             L  L  L + +N+L YI   A     SL+   L    LT IP   L +LH L  L L 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 471 DNLITEINNLSLNSLHQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGT 529
              I  I + S   L++L  L ++    +  ++      L+ LT L++    +  V    
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLA 243

Query: 530 FDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGN 589
                                     L  L                      ++L++  N
Sbjct: 244 -----------------------VRHLVYL----------------------RFLNLSYN 258

Query: 590 QISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK 649
            IS +                     L  L         + + L    ++ V+PY F   
Sbjct: 259 PISTIEG-------------SMLHE-LLRL---------QEIQLVGGQLAVVEPYAFRGL 295

Query: 650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
             L  +++ GN+L  + ++      + + + +    +  NP  CDC + W+         
Sbjct: 296 NYLRVLNVSGNQLTTLEESVF--HSVGNLETL---ILDSNPLACDCRLLWVFRRRWRLNF 350

Query: 710 NKPNL---------------VDLDTVTCKL------LYNRANPAILLKEAHSNQFLCEYE 748
           N+                       +          + +R    + + E H+ QF+C  +
Sbjct: 351 NRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD 410

Query: 749 TNCAPLCH 756
            +  P   
Sbjct: 411 GDPPPAIL 418

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  224 bits (574), Expect = 5e-64
 Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
            +L+   F +   L++L +    +  +  G+F  L  L+TL LR  N       L  I  
Sbjct: 45  KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SN------RLKLIPL 97

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
            VFT  L +L  LD+S N I  L D +F  L +L  L +  N L  ++  +FS  +    
Sbjct: 98  GVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN---- 152

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
             +L  L L   +  S+P E  S L  L  L L+   +  + D++   L  L VL +S  
Sbjct: 153 --SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
             ++          +L  + + + ++  +       L  L  L+LS N ++   +  +  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--TIEGSML 268

Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
             L RL  + +   ++  ++   F+ L  L+VL++  NQ+ ++  + F S+ NL TLI+ 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 400 NNKL 403
           +N L
Sbjct: 329 SNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (335), Expect = 8e-33
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C    S +   + C    +   +P  IP +   L L  NRI  +    F     
Sbjct: 3   CPPRCEC----SAQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPH 57

Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L+ L LN + V  +    FN L  L  L L  NRL  I    F  L NL +L +  NKI+
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117

Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSN 931
            + +  F  L +LK L++  N +      A   L+S ++ +TL   
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 2e-25
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 6/159 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +         + + +    L  L +   ++  +       L  L  L L  N ++ 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA--VWHLSSQI 923
           I G     L  L+E+ L   ++  +    F  L +L+VL +  N++T+    V+H    +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
           +++ L SNP +CDC          +R      +  Q  C
Sbjct: 323 ETLILDSNPLACDCR----LLWVFRRRWRLNFNRQQPTC 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 2e-20
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +  N +  +   +F G   L+ L L   ++ +I  +  + L  LI+LRL    +  
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQ 922
           IR Y F+RL  L+ L + +   +       L   +L  L + H  +T+    AV HL   
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY- 249

Query: 923 IQSITLTSNPWS 934
           ++ + L+ NP S
Sbjct: 250 LRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 3e-20
 Identities = 30/108 (27%), Positives = 50/108 (46%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T+L +  N+I ++  + F     L+ L +  + +  I ++ F+GL  L  L L+   LT 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           I       L  L  L L++  I  I + +F  L  LKVL++ H     
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 38/157 (24%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
           +  +++P     L +L  LS+  C +  +   + R L  L+                   
Sbjct: 212 YLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRF------------------ 252

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
                        L+LS N I T+  ++   L  L  + L   +L+ V  ++F   +   
Sbjct: 253 -------------LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN--- 296

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
               LRVL++S N   +L    F  +  L+ L L  N
Sbjct: 297 ---YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
           +++   + + L+ L+ L++ +  I  +       L +L+ + L           L  +  
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL-VGG------QLAVVEP 289

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS 204
             F   L  L  L++S N + TL +++F  + +L  L L  N L+
Sbjct: 290 YAFRG-LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  246 bits (629), Expect = 4e-73
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 50/350 (14%)

Query: 183 PDAIFCPLQ---SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAE 239
           P    CP +    L  +  +   L  V      +           +LDL NN    +   
Sbjct: 20  PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPD---------TALLDLQNNKITEIKDG 70

Query: 240 GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299
            F  L  L  L L  N ++ ++  A   L  L  L LS N L  +P ++    + L+E+ 
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR 127

Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
           +  N I  +   +FN L Q+IV++L  N L    +    F G+ +L              
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL-------------- 173

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
                       + + +  I +I +    SL+ LH   +  NK+ ++++ SL  L  L+ 
Sbjct: 174 ----------SYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAK 220

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
           L L  N +  ++  +L N+  L++ HLN NKL ++P  L +   ++ + L +N I+ I +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 480 ------LSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNK 521
                          +G+ L  N +    I    F  + V   + L + K
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  190 bits (485), Expect = 9e-54
 Identities = 66/323 (20%), Positives = 123/323 (38%), Gaps = 56/323 (17%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           D   L ++  KI  +  G F+ L+                               +L +L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLK-------------------------------NLHTL 81

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
            L  N I  +    F PL  L  L L++N+L  +                L+ L +  N 
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---------TLQELRVHENE 132

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
              +    F+ L+++  + L  N L    + + A  G+  L+ + ++  N+  IP  L  
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 191

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
               L E++L  N I  +       L  L  L LS N ++   V+  + +    L  L++
Sbjct: 192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHL 247

Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA------SLSNLHTLIMSNNKLK 404
             NK+ K+      D   +QV++L NN I +I  N F         ++   + + +N ++
Sbjct: 248 NNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 405 --RIESNSLDSLTALSVLSLDNN 425
              I+ ++   +   + + L N 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  187 bits (477), Expect = 9e-53
 Identities = 77/371 (20%), Positives = 133/371 (35%), Gaps = 75/371 (20%)

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
            L+ V   +  +  +   +        +LDL NN++TE  +    F  L  L  L +  N
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTA---LLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           K++K+    F  L +L+ L+L  NQ++ +      +L  L    +  N++ ++  +  + 
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNG 143

Query: 414 LTALSVLSLDNNELE--YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
           L  + V+ L  N L+   IE  A +    L    +    +T IP+ L    SL  L L  
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201

Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFD 531
           N IT+++  SL  L+ LA L L+ N+IS +  G       L  L+L +NK+ KV  G   
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LA 260

Query: 532 NNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
           ++  +  + L  N ++ IG   F                              + +  N 
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA----------------SYSGVSLFSNP 304

Query: 591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKP 650
           +                                                ++QP TF    
Sbjct: 305 VQ---------------------------------------------YWEIQPSTFRCVY 319

Query: 651 NLTRVDLVGNR 661
               V L   +
Sbjct: 320 VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  172 bits (437), Expect = 2e-47
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 52/303 (17%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
             +L L+NN+I  I    F +L NLHTLI+ NNK+ +I   +   L  L  L L  N+L+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITE--INNLSLNSL 485
            + E   K    LQ+  ++ N++T++ K V   L+ +  ++LG N +    I N +   +
Sbjct: 114 ELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
            +L+ +R+ + NI+ I +G+   L   T L+L  NKI KV+A +    +NL  + L  N 
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIP-ADLQWLDIHGNQISELGNYFEIESQ 603
           ++ +  G     P+L  L+++ N L      L     +Q + +H N IS +G+       
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS------- 280

Query: 604 LRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
                                     N F          P     K + + V L  N ++
Sbjct: 281 --------------------------NDFC--------PPGYNTKKASYSGVSLFSNPVQ 306

Query: 664 NIN 666
              
Sbjct: 307 YWE 309

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  171 bits (436), Expect = 2e-47
 Identities = 64/307 (20%), Positives = 120/307 (39%), Gaps = 46/307 (14%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
           + +  G F+ L +L  L +   KI  +S G+F  L KL+ L L   N       L ++  
Sbjct: 65  TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KN------QLKELPE 117

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTA 217
            +      +L+ L +  N I  +  ++F  L  +  + L  N L +      +F      
Sbjct: 118 KMPK----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--- 170

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
                L  + +++ +  ++P         L EL+L GN +T +   +L GLN+L  L LS
Sbjct: 171 ---KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N++  +       +  L+E++L NN +  + PG       + V+ L NN ++   + + 
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA--IGSN 281

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE--SIHRNTFASLSNLHT 395
            F                                + L +N ++   I  +TF  +     
Sbjct: 282 DFCPP------------------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 396 LIMSNNK 402
           + + N K
Sbjct: 324 VQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (311), Expect = 8e-31
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
            L+    +   L ++PK L        LDL +N ITEI +    +L  L  L L  N IS
Sbjct: 32  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPN 558
            IS G F  L  L  L L+ N+++++          L  +R+  N +T +   +F  L  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
           ++ + +  N             L+   I       +           L+Y   +   +T 
Sbjct: 147 MIVVELGTN------------PLKSSGIENGAFQGMKK---------LSYIRIADTNITT 185

Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
           +     P S+  L L  N I+KV   +     NL ++ L  N +  ++  +L 
Sbjct: 186 IPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (300), Expect = 3e-29
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFI 824
            CP  C C+        V+ CS    D  L   P  +P D   L L  N+I  +    F 
Sbjct: 24  VCPFRCQCH------LRVVQCS----DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK 73

Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
             K L  L L ++ +  I    F  L +L  L L  N+L E+        + L+EL +  
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHE 130

Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
           N+I  +    F  L  + V++L  N + S  +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 806 TELYLDGNRIPVVG--SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
             + L  N +   G  + +F G KKL  + +  +++ TI       L EL    LD N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKI 204

Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSS 921
           T++     + L NL +L L +N I  + N +  +  HL+ L L++N++      +     
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264

Query: 922 QIQSITLTSNP 932
            IQ + L +N 
Sbjct: 265 -IQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 793 YDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
            D  +   P  +P   TEL+LDGN+I  V + S  G   L  L L+ + +  + N +   
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL------SLTHLKV 903
              L  L L++N+L ++ G      + ++ +YL  N I  I +  F              
Sbjct: 239 TPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 904 LQLDHNRITSFAV 916
           + L  N +  + +
Sbjct: 298 VSLFSNPVQYWEI 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  246 bits (630), Expect = 1e-72
 Identities = 73/407 (17%), Positives = 146/407 (35%), Gaps = 42/407 (10%)

Query: 186 IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245
             C   +L Y  +  +   ++ T             N +++   N++   LPA       
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
           +++ L L    +  +  +A    +++  L +  N +  +PP +F     L  + L+ N +
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 306 NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
           + L  GIF+   +L  L +SNN L                           +++   F+ 
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLE--------------------------RIEDDTFQA 163

Query: 366 LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
              LQ L L +N++  +     + + +L    +S N L      +L    A+  L   +N
Sbjct: 164 TTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 215

Query: 426 ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
            +  +          L    L  N LT+    L N   L  +DL  N + +I       +
Sbjct: 216 SINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
            +L  L ++ N +  ++    + +  L +L+L+ N +  VE         L  + LD N 
Sbjct: 272 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNS 329

Query: 546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQIS 592
           +  +         L  L +S N  +      +  ++    +      
Sbjct: 330 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  232 bits (594), Expect = 1e-67
 Identities = 72/368 (19%), Positives = 150/368 (40%), Gaps = 26/368 (7%)

Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
              + D+        L + + +    +++  LP A+    + +  LNL   ++  + T++
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
           F+          ++ L +  N+   LP   F  +  L  L L+ N L+ L          
Sbjct: 89  FAYAH------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
           LT L++S NNL  I  + F  +  L+ + L +N +  +   +      L   ++S N L+
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS 199

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
                  T +    +  L+ ++N +N +   +  +   L +L L++N +         + 
Sbjct: 200 -------TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA--WLLNY 247

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
             L  + +S N+L++I  +    +  L  L + NN L  +     +   +L+   L+ N 
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNH 306

Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVFEKL 509
           L  + +       L+ L L  N I  +    L++ H L  L L+ N+    S + +F  +
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363

Query: 510 SVLTILNL 517
           +   + + 
Sbjct: 364 ARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  224 bits (573), Expect = 7e-65
 Identities = 84/394 (21%), Positives = 154/394 (39%), Gaps = 28/394 (7%)

Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
           N+    +  D+  +  T++         L+   ++    + M KL +++     ++++L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
           L + QIE I    FA    +  L M  N ++ +  +   ++  L+VL L+ N+L  +   
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 434 ALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
              N+  L    ++ N L  I     +   SL+ L L  N +T +    L+ +  L    
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192

Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL 552
           ++ N +S ++  +      +  L+ + N I  V          L  ++L  N LTD    
Sbjct: 193 VSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAW- 243

Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
               P LV +++S N LE   Y        L+ L I  N++  L  Y   +    L   D
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKVLD 301

Query: 611 ASSNKLTELTGNAIP-HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
            S N L  +  N      +ENL+L +N I  ++  T      L  + L  N     +  A
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRA 358

Query: 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
           L        +N+    + +    C  + Q     
Sbjct: 359 LF-------RNVARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  198 bits (505), Expect = 8e-56
 Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 59/371 (15%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
             L      +   ++ L++   +I  +   +F                            
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------ 93

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
                  +++ L +  N+I  LP  +F  +  L+ L L +N LS++    F N       
Sbjct: 94  -------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT------ 140

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
             L  L +SNN+ + +  + F   + LQ L L  N LT +    +    SL   N+S N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNL 197

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
           L  +   +      ++E+   +NSINV+   +     +L +L L +N LT+     A   
Sbjct: 198 LSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTD----TAWLL 245

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
               LV ++++YN++ K+    F  + RL+ L++ NN++ +++      +  L  L +S+
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSH 304

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVL 458
           N L  +E N       L  L LD+N +  ++ +       L++  L+ N         + 
Sbjct: 305 NHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALF 360

Query: 459 RNLHSLKTLDL 469
           RN+      D 
Sbjct: 361 RNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  177 bits (452), Expect = 1e-48
 Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
             +   +F     ++ L + F  I  L    F+ +  L  L L   N       L  +  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RN------DLSSLPR 134

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
            +F +    L +L +S N++  + D  F    SL  L L+ N+L++V             
Sbjct: 135 GIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP------- 186

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
             +L   ++S N   +L          ++EL    N +  +          LT+L L  N
Sbjct: 187 --SLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRGPV---NVELTILKLQHN 236

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
           NL +           L EV L  N +  +    F  + +L  L +SNN L          
Sbjct: 237 NLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---LNLYG 291

Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
             +  L VL++++N +  ++ +  +   RL+ L+L++N I ++  +T  +L NL    +S
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LS 347

Query: 400 NNKLKRIESNSLDSLTALSVLSLDNNEL 427
           +N        +L     ++  ++D+ + 
Sbjct: 348 HNDWDCNSLRAL--FRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L+  +I  + +++F     +Q L++  + +  +    F  +  L +L L+ N L+ 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +    F     L  L +  N +  I + TF + T L+ LQL  NR+T   +  + S +  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFH 190

Query: 926 ITLTSN 931
             ++ N
Sbjct: 191 ANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 17/108 (15%), Positives = 42/108 (38%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             +    + +  + +      +++++L LN   +E I    F     +  L +  N +  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +  + F+ +  L  L L+ N +  +    F +   L  L + +N +  
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            E+ L  N +  +  H F+  ++L+ L+++++ +  + N     +  L +L L  N L  
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 309

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +      + + L  LYL +N I+ +   T  +L +L    L HN     ++  L   +  
Sbjct: 310 VER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVAR 365

Query: 926 ITLTSNPWSCDCDF 939
             +      C  D+
Sbjct: 366 PAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L L+ N +  +    F    KL  L ++++++E I + TF     L  L+L  NRLT 
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 866 IRGYEFERLE----------------NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
           +       L                  + EL   +N I  +     + LT LK   L HN
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN 236

Query: 910 RITSFAVWHLSSQIQSITLTSN 931
            +T  A       +  + L+ N
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
            +   +        +  N +      +      ++ L  + + +  +       L  L  
Sbjct: 179 HVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTIL-- 231

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
            +L  N LT+           L E+ L YN++  I    F+ +  L+ L + +NR+ +  
Sbjct: 232 -KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288

Query: 915 AVWHLSSQIQSITLTSN 931
                   ++ + L+ N
Sbjct: 289 LYGQPIPTLKVLDLSHN 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  243 bits (623), Expect = 3e-72
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 53/371 (14%)

Query: 164 DELQSLESLDLSMNSIWTLPDAIF--CPLQ---SLSYLNLTQNKLSNVATFSFSNYDTAR 218
           DE  S       +  + +LP      CP      L  +  +   L  V      +     
Sbjct: 1   DEEASGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPD----- 55

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
                 +LDL NN    L  + F  L  L  L L  N ++ + + A   L  L  L +S 
Sbjct: 56  ----TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
           N+LV IPP L      L E+ + +N I  +  G+F+ L  +  +++  N L         
Sbjct: 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
           F GL +L  L I+  K+  +   + +    L  LHL++N+I++I        S L+ L +
Sbjct: 169 FDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
            +N+++ IE+ SL  L  L  L                        HL+ NKL+ +P  L
Sbjct: 225 GHNQIRMIENGSLSFLPTLREL------------------------HLDNNKLSRVPAGL 260

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLH------QLAGLRLTENNIS--NISKGVFEKLS 510
            +L  L+ + L  N IT++       +          G+ L  N +    +    F  ++
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 511 VLTILNLASNK 521
               +   + K
Sbjct: 321 DRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  182 bits (464), Expect = 5e-51
 Identities = 70/323 (21%), Positives = 123/323 (38%), Gaps = 57/323 (17%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           D   L ++   I  L    F+GL+                                L +L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQ-------------------------------HLYAL 83

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
            L  N I  + +  F PL+ L  L +++N L  +     S         +L  L + +N 
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---------SLVELRIHDNR 134

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
              +P   FS L  +  + + GN L        A DGL  L  L +S   L  IP +L  
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP- 192

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
               L E++L +N I  +        ++L  L L +N++    +   + S L  L  L++
Sbjct: 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHL 248

Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL------SNLHTLIMSNNKLK 404
             NK++++ +    DL  LQV++L  N I  +  N F  +      +  + + + NN + 
Sbjct: 249 DNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 405 --RIESNSLDSLTALSVLSLDNN 425
              ++  +   +T    +   N 
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  178 bits (454), Expect = 1e-49
 Identities = 72/332 (21%), Positives = 116/332 (34%), Gaps = 52/332 (15%)

Query: 277 SVNNLVNIPPELFNQ-----SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
            + +L ++PP             L+ V   +  +  +   I    T L   DL NN+++E
Sbjct: 12  GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISE 68

Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
                                     L    FK L  L  L L NN+I  IH   F+ L 
Sbjct: 69  --------------------------LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
            L  L +S N L  I  N   SL     L + +N +  + +       ++    + GN L
Sbjct: 103 KLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 452 TEI---PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
                 P     L  L  L + +  +T I      +L++L    L  N I  I      +
Sbjct: 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL---HLDHNKIQAIELEDLLR 215

Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
            S L  L L  N+I+ +E G+      L  + LD N L+ +    P L  L  + +  N 
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275

Query: 569 LEWFD--------YALIPADLQWLDIHGNQIS 592
           +            + +  A    + +  N + 
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  170 bits (433), Expect = 8e-47
 Identities = 66/312 (21%), Positives = 111/312 (35%), Gaps = 57/312 (18%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           S L    F+ L  L  L +   KI  +   +F  LRKL+ L +              S N
Sbjct: 67  SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI--------------SKN 112

Query: 161 VFT----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA----TFSFS 212
                  +   SL  L +  N I  +P  +F  L++++ + +  N L N       F   
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-- 170

Query: 213 NYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLT 272
                  G+ L  L +S      +P +       L EL+L  N +  +    L   + L 
Sbjct: 171 -------GLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
            L L  N +  I     +    L+E++L NN ++ +  G+ + L  L V+ L  N +T+ 
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHTNNITK- 278

Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE--SIHRNTFASL 390
            V    F  +   V                         + L NN +    +   TF  +
Sbjct: 279 -VGVNDFCPVGFGVKRA------------------YYNGISLFNNPVPYWEVQPATFRCV 319

Query: 391 SNLHTLIMSNNK 402
           ++   +   N K
Sbjct: 320 TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  147 bits (374), Expect = 4e-39
 Identities = 62/347 (17%), Positives = 117/347 (33%), Gaps = 90/347 (25%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
             +L L+NN I  + ++ F  L +L+ L++ NNK+ +I   +   L  L  L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITE--INNLSLNSL 485
            I  N   +   L +  ++ N++ ++PK V   L ++  +++G N +        + + L
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
            +L  LR++E  ++ I K + E L     L+L  NKIQ +E       S L  + L  N 
Sbjct: 173 -KLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
           +         + N     +                L+ L +  N++S +           
Sbjct: 229 IRM-------IENGSLSFLPT--------------LRELHLDNNKLSRV----------- 256

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
                                                P        L  V L  N +  +
Sbjct: 257 -------------------------------------PAGLPDLKLLQVVYLHTNNITKV 279

Query: 666 NQTALRISPLP-----------SHKNIPDFYIGENPFQCDCNMQWLQ 701
                                  +  +P + +    F+C  +   +Q
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  127 bits (320), Expect = 7e-32
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
            L+    +   L  +PK +        LDL +N I+E+       L  L  L L  N IS
Sbjct: 34  HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPN 558
            I +  F  L  L  L ++ N + ++        S+LV +R+  N +  +  G+F  L N
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
           +                        +++ GN +   G        L+L Y   S  KLT 
Sbjct: 149 M----------------------NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
           +  +  P ++  L L +N I  ++         L R+ L  N+++ I   +L 
Sbjct: 187 IPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (291), Expect = 5e-28
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFI 824
            CP  C C+        V+ CS    D  L   P  I  D T L L  N I  +    F 
Sbjct: 26  MCPFGCHCH------LRVVQCS----DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK 75

Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
           G + L  L L ++ +  IH K F+ L++L  L +  N L EI         +L EL +  
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHD 132

Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
           N+I  +    F  L ++  +++  N + +   
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 7e-21
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
            +P  +P    EL+LD N+I  +     +   KL  L L  + +  I N + + L  L  
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF------LSLTHLKVLQLDHN 909
           L LD+N+L+ +       L+ L+ +YL  N I  +    F      +   +   + L +N
Sbjct: 246 LHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 910 RITSFAV 916
            +  + V
Sbjct: 305 PVPYWEV 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 28/167 (16%)

Query: 793 YDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL--NSSHVETIHNKTF 847
             N L   PP +P    EL +  NRI  V    F G + +  + +  N           F
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 848 NGLK--------------------ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
           +GLK                     L  L LD N++  I   +  R   L  L L +N+I
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNP 932
             I N +   L  L+ L LD+N+++     +  L   +Q + L +N 
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL-LQVVYLHTNN 275

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  253 bits (647), Expect = 3e-70
 Identities = 80/484 (16%), Positives = 161/484 (33%), Gaps = 41/484 (8%)

Query: 70  NSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSA 129
           ++   N     I+    + L+      L  + +    + Q L  L+ +          + 
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 130 GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP 189
                           +   +    L  S+      L+ L  ++L      T        
Sbjct: 466 AVD------WEDANSDYAKQYENEELSWSN------LKDLTDVELYNCPNMTQLPDFLYD 513

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNY---DTARCGINLRVLDLSNNSFDSLPAE-GFSRLS 245
           L  L  LN+  N+  + A          D    G  +++  +  N+ +  PA     ++ 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
           +L  L    N +  L   A      LT L L  N +  IP +    +  ++ +   +N +
Sbjct: 574 KLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 306 NVLAPGIFNV-LTQLIVLDLSNNELTEEWVNAATFSG---LHRLVVLNIAYNKMNKLDSS 361
             +        +  +  +D S N++  E  N +             + ++YN++ K  + 
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 362 IFKDLYRLQVLHLENNQIESIHRN-------TFASLSNLHTLIMSNNKLKRI-ESNSLDS 413
           +F     +  + L NN + SI  N        + +   L T+ +  NKL  + +     +
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK-------LTEIPKVLRNLHSLKT 466
           L  LS + +  N           NS+ L+ F +   +       L + P  +    SL  
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
           L +G N I +++      L+    L + +N   +I            +  L  +K Q + 
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 527 AGTF 530
               
Sbjct: 868 GCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  246 bits (630), Expect = 4e-68
 Identities = 99/622 (15%), Positives = 192/622 (30%), Gaps = 103/622 (16%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
               P +   L +LK LS                         R H              
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI------RMHYKK 389

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
           +F D  Q L   DL  ++I   P+    P++  S ++L   ++ N               
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMK--PIKKDSRISLKDTQIGN--------------- 432

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
                     N    +      RL++LQ +Y   +  T+               N     
Sbjct: 433 --------LTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAK 478

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
                   ++  +DL +V L N       P     L +L  L+++ N             
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN------------- 525

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI-HRNTFASLSNLHTLIMS 399
              R +          +L         ++Q+ ++  N +E      +   +  L  L   
Sbjct: 526 ---RGISAAQLKADWTRLADDEDT-GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 400 NNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV-- 457
           +NK++ +E  +  +   L+ L LD N++E I E+    +  ++    + NKL  IP +  
Sbjct: 582 HNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-----NNISNISKGVFEKLSVL 512
            ++++ + ++D   N I         S+    G+  +      N I      +F   S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF 572
           + + L++N +  +                  N L    G +     L  +++  N L   
Sbjct: 700 STIILSNNLMTSIPE----------------NSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 573 DYALIPAD---LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN----AIP 625
                      L  +D+  N  S      +  +  +L  F     +     GN      P
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRHQRD--AEGNRILRQWP 799

Query: 626 HSVEN------LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
             +        L + +N I KV        P L  +D+  N   +I+ T++         
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSV---CPYIEA 853

Query: 680 NIPDFYIGENPFQCDCNMQWLQ 701
            +      +      C+   ++
Sbjct: 854 GMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (478), Expect = 5e-49
 Identities = 78/579 (13%), Positives = 180/579 (31%), Gaps = 58/579 (10%)

Query: 123 KIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTL 182
             G     ++    +                S  +  N  T +      L  +   I   
Sbjct: 212 PAGTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYI-KD 270

Query: 183 PDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS 242
             A+    ++L   N      +   T    N++           +   + +   P     
Sbjct: 271 YKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF----------NKELDMWGDQPGVDLD 320

Query: 243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
              R+  L L G         A+  L  L VL+   ++         ++         + 
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 303 NSINVLAPGIF-NVLTQLIVLDLSNNELTE--EWVNAATFSGLH-RLVVLNIAYNKMNKL 358
           + I +    +F +   +L + DL  + +    E       S +  +   +    N++  +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 359 DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
             +I + L +LQ+++  N+     +       +N         K    E  S  +L  L+
Sbjct: 441 SKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLT 494

Query: 419 VLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEI----------PKVLRNLHSLKTL 467
            + L +   +  + +  L +   LQ  ++  N+                       ++  
Sbjct: 495 DVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 468 DLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
            +G N + E   + SL  + +L  L    N + ++    F     LT L L  N+I+++ 
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIP 611

Query: 527 AGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNISENLLE-------WFDYALI 577
                    +  +    N L  I        +  +  ++ S N +               
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 578 PADLQWLDIHGNQISELGNYFEIESQL-RLTYFDASSNKLTELTGNAIP---------HS 627
             +   + +  N+I +     E+ +    ++    S+N +T +  N++          + 
Sbjct: 672 GINASTVTLSYNEIQKFPT--ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 628 VENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
           +  + L  N ++ +         P L+ +D+  N   + 
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 4e-12
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 806 TELYLDGNRIPVVGS---------HSFIGRKKLQILFLNSSHVETI-HNKTFNGLKELII 855
             L +  NR                      K+QI ++  +++E    + +   + +L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           L    N++  +    F     L +L L YN+I  I          ++ L   HN++   
Sbjct: 578 LDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 2e-11
 Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI-HNKTFNGLKELIILRLDDNRLT 864
           T+L LD N+I  +         +++ L  + + ++ I +      +  +  +    N++ 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 865 EI-----RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
                     +  +  N   + L YN+I       F + + +  + L +N +TS     L
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 920 SSQIQSITLTSN 931
             +  +   T  
Sbjct: 718 KPKDGNYKNTYL 729

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 2e-11
 Identities = 42/367 (11%), Positives = 94/367 (25%), Gaps = 33/367 (8%)

Query: 583 WLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISK 640
           W  + G                    F+   +   +  G  + +   V  L L       
Sbjct: 278 WEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 641 VQPYTFFMKPNLTRVDLVGNRLKN----INQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
             P        L  +    +             L        K+    +  +     D  
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 697 MQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCH 756
           +        +     P +  +   +   L +        +  +    +         L  
Sbjct: 398 LNLS-DLLQDAINRNPEMKPIKKDSRISLKD-------TQIGNLTNRITFISKAIQRLTK 449

Query: 757 CCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIP 816
                  +   T  N    + D + +      +     + L      D T++ L      
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-----DLTDVELYNCPNM 504

Query: 817 VVGSHSFIGRKKLQILFLNSSHVETIHN---------KTFNGLKELIILRLDDNRLTEI- 866
                      +LQ L +  +   +               +   ++ I  +  N L E  
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQ 924
                +++  L  L   +NK+ ++    F +   L  L+LD+N+I          + Q++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 925 SITLTSN 931
            +  + N
Sbjct: 623 GLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 6e-11
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-----KKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860
             +    N+I   G +               + L+ + ++    + F     +  + L +
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 861 NRLTEI-------RGYEFERLENLRELYLQYNKIIYISNR-TFLSLTHLKVLQLDHNRIT 912
           N +T I       +   ++    L  + L++NK+  +S+     +L +L  + + +N  +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 913 SF 914
           SF
Sbjct: 767 SF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 9e-09
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 13/146 (8%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFN--GLKELIILR---LD 859
           T + L  N++  +           L  + ++ +   +   +  N   LK   I      +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
            NR+            +L +L +  N I  +  +       L +L +  N   S  V  +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSV 847

Query: 920 SSQIQSITLT----SNPWSCDCDFTE 941
              I++               CD   
Sbjct: 848 CPYIEAGMYVLLYDKTQDIRGCDALG 873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  240 bits (614), Expect = 4e-68
 Identities = 72/424 (16%), Positives = 145/424 (34%), Gaps = 43/424 (10%)

Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
              N     P+                  +       +  ++      N +++   N++ 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN-NQKIVTFKNSTM 63

Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
             LPA       +++ L L    +  +  +A    +++  L +  N +  +PP +F    
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
            L  + L+ N ++ L  GIF+   +L  L +SNN L                        
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----------------------- 160

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
              +++   F+    LQ L L +N++  +  +      +L    +S N L      +L  
Sbjct: 161 ---RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS-----TLAI 209

Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
             A+  L   +N +  +          L    L  N LT+    L N   L  +DL  N 
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE 265

Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
           + +I       + +L  L ++ N +  ++    + +  L +L+L+ N +  VE       
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QF 323

Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
             L  + LD N +  +         L  L +S N  +      +  ++    +       
Sbjct: 324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 594 LGNY 597
             +Y
Sbjct: 382 KIDY 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  229 bits (584), Expect = 3e-64
 Identities = 74/381 (19%), Positives = 142/381 (37%), Gaps = 49/381 (12%)

Query: 143 LRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
              ++      + D+        L + + +    +++  LP A+    +           
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR----------- 75

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
                               + +L+L++   + +    F+    +Q+LY+  N + +L  
Sbjct: 76  -------------------QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
           H    +  LTVL L  N+L ++P  +F+ +  L  + + NN++  +    F   T L  L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
            LS+N LT         S +  L   N++YN ++ L          ++ L   +N I  +
Sbjct: 177 QLSSNRLTH-----VDLSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVV 226

Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442
                     L  L + +N L       L +   L  + L  NELE I  +       L+
Sbjct: 227 RGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
             +++ N+L  +    + + +LK LDL  N +  +   +     +L  L L  N+I  + 
Sbjct: 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK 340

Query: 503 KGVFEKLSVLTILNLASNKIQ 523
                    L  L L+ N   
Sbjct: 341 LSTHHT---LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  211 bits (539), Expect = 2e-58
 Identities = 84/393 (21%), Positives = 154/393 (39%), Gaps = 28/393 (7%)

Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
           N+    +  D+  +  T++         L+   ++    + M KL +++     ++++L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
           L + QIE I    FA    +  L M  N ++ +  +   ++  L+VL L+ N+L  +   
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 434 ALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
              N+  L    ++ N L  I     +   SL+ L L  N +T +    L+ +  L    
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 198

Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL 552
           ++ N +S ++  +      +  L+ + N I  V          L  ++L  N LTD    
Sbjct: 199 VSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAW- 249

Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
               P LV +++S N LE   Y        L+ L I  N++  L  Y   +    L   D
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKVLD 307

Query: 611 ASSNKLTELTGNAIP-HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
            S N L  +  N      +ENL+L +N I  ++  T      L  + L  N     +  A
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRA 364

Query: 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQS 702
           L        +N+    + +    C  + Q    
Sbjct: 365 L-------FRNVARPAVDDADQHCKIDYQLEHG 390

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  202 bits (514), Expect = 5e-55
 Identities = 103/589 (17%), Positives = 202/589 (34%), Gaps = 79/589 (13%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
             L      +   ++ L++   +I  +   +F                            
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------ 99

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
                  +++ L +  N+I  LP  +F  +  L+ L L +N LS++    F N       
Sbjct: 100 -------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT------ 146

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
             L  L +SNN+ + +  + F   + LQ L L  N LT +    +    SL   N+S N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNL 203

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
           L  +   +      ++E+   +NSINV+   +     +L +L L +N LT+     A   
Sbjct: 204 LSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTD----TAWLL 251

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
               LV ++++YN++ K+    F  + RL+ L++ NN++ +++      +  L  L +S+
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSH 310

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVL 458
           N L  +E N       L  L LD+N +  ++ +       L++  L+ N         + 
Sbjct: 311 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALF 366

Query: 459 RNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRLTENNISNISKGV---FEKLSV 511
           RN+      D   +   +           S        L    ++++ + V     + S 
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA 426

Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571
              +N   +    +             +  + N L        ++  L    I +  L  
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA------EVQQLTNEQIQQEQLLQ 480

Query: 572 FDYALIPADLQWLDIH----GNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS 627
             +A I  +L+   +           L   F    + +      +  + TE         
Sbjct: 481 GLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQ--KE 538

Query: 628 VENLFLTNNLISKVQPYTFFM-KPNLTRVDLVGNRLKNINQTALRISPL 675
            E+L   N  + K                 L   ++K +     R    
Sbjct: 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.6 bits (235), Expect = 5e-20
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L+  +I  + +++F     +Q L++  + +  +    F  +  L +L L+ N L+ 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +    F     L  L +  N +  I + TF + T L+ LQL  NR+T   +  + S +  
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFH 196

Query: 926 ITLTSN 931
             ++ N
Sbjct: 197 ANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 2e-18
 Identities = 17/108 (15%), Positives = 42/108 (38%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             +    + +  + +      +++++L LN   +E I    F     +  L +  N +  
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +  + F+ +  L  L L+ N +  +    F +   L  L + +N +  
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.0 bits (197), Expect = 2e-15
 Identities = 24/108 (22%), Positives = 52/108 (48%)

Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
           ++++D     V      I     +I+   +S +  +     +  +++ +L L+D ++ EI
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
             Y F     +++LY+ +N I Y+    F ++  L VL L+ N ++S 
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 2e-14
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            E+ L  N +  +  H F+  ++L+ L+++++ +  + N     +  L +L L  N L  
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 315

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +      + + L  LYL +N I+ +   T  +L +L    L HN     ++  L   +  
Sbjct: 316 VER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVAR 371

Query: 926 ITLTSNPWSCDCDF 939
             +      C  D+
Sbjct: 372 PAVDDADQHCKIDY 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 7e-13
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
            +   +        +  N +  +          ++ L  + + +  +       L  L  
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNVELTIL-- 237

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
            +L  N LT+           L E+ L YN++  I    F+ +  L+ L + +NR+ +  
Sbjct: 238 -KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294

Query: 915 AVWHLSSQIQSITLTSN 931
                   ++ + L+ N
Sbjct: 295 LYGQPIPTLKVLDLSHN 311

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  230 bits (588), Expect = 8e-66
 Identities = 66/434 (15%), Positives = 135/434 (31%), Gaps = 51/434 (11%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
               +   ++ +S+     ++     ++  L+L+ N LS ++    + +        L +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLEL 62

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           L+LS+N            LS L+ L L  N +       L    S+  L+ + NN+  + 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
                  +  K +YL NN I +L        +++  LDL  NE+      A   +    L
Sbjct: 116 CSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTL 171

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
             LN+ YN +  +   +     +L+ L L +N++  +    F S + +  + + NNKL  
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228

Query: 406 IESNSLDSLTALSVLSLDNNEL-----------------------EYIEENALKNSTSLQ 442
           I   +L     L    L  N                         + +     +  T   
Sbjct: 229 I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 443 DFHLNGNKLTEIPK------VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
             H       ++P       +         L    +    +     N   +   +   + 
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN-QARQREIDALKE 346

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKL 556
               +   V  +      L      + +  +     ++ L           ++     + 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 557 PNLVWLNISENLLE 570
             L  L       E
Sbjct: 407 SPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  219 bits (560), Expect = 5e-62
 Identities = 74/475 (15%), Positives = 157/475 (33%), Gaps = 37/475 (7%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
             ++  ++++S     A        ++EL L GN L+ ++   L     L +LNLS N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
                        L+ + L NN +  L          +  L  +NN ++   V+ +   G
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR--VSCSRGQG 121

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSN 400
                 + +A NK+  L         R+Q L L+ N+I++++     AS   L  L +  
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
           N +  ++   +     L  L L +N+L ++     +++  +    L  NKL  I K LR 
Sbjct: 179 NFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
             +L+  DL  N           S +      + +  +  ++    E+ +V T+ +  + 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 521 KIQKVEAGTFDN-----NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA 575
             + + A   D            +   G+    +            ++  +         
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 576 L--IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL-- 631
           +         L+     +       E  S  R  + +        +    + H+ E    
Sbjct: 355 VTLRKQAKITLEQKKKALD------EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408

Query: 632 -----FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
                 +                  +   D+  ++   + +   R+  L    ++
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  204 bits (520), Expect = 7e-57
 Identities = 71/446 (15%), Positives = 139/446 (31%), Gaps = 37/446 (8%)

Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
               +R +   +  + L            ++  L+LS N L  I          L+ + L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
            +N +          L+ L  LDL+NN + E             +  L+ A N ++++  
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSC 116

Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS-LTALSV 419
           S  +     + ++L NN+I  +        S +  L +  N++  +    L +    L  
Sbjct: 117 SRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
           L+L  N +  ++   +     L+   L+ NKL  +    ++   +  + L +N +  I  
Sbjct: 174 LNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
            +L     L    L  N     +   F       +  +A   ++K+     +  +     
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
                   D+    P    L+ L   E+ L              L   G++   L    E
Sbjct: 290 HYGAYCCEDLPA--PFADRLIALKRKEHAL--------------LSGQGSETERLEC--E 331

Query: 600 IESQLRLTYFDASSNKLTELTGNA--IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
            E+Q R    DA   +   +         +   L      + +           L     
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

Query: 658 VGNRLKNINQTALRISPLPSHKNIPD 683
                  +       SPL   + I  
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVK 417

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  189 bits (482), Expect = 7e-52
 Identities = 64/399 (16%), Positives = 134/399 (33%), Gaps = 33/399 (8%)

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
            E+       K   + ++S+      +      +  LDLS N L++  ++AA  +   +L
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKL 60

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            +LN++ N + +      + L  L+ L L NN ++ +         ++ TL  +NN + R
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISR 113

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHS 463
           +  +          + L NN++  + +      + +Q   L  N++  +    +  +  +
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
           L+ L+L  N I ++    +    +L  L L+ N ++ +    F+  + +T ++L +NK+ 
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227

Query: 524 KVEAGTFDNNSNLVAIRLDGNYLT--DIGGLFPKLPNLVWLNISENLLEWFDYALIPADL 581
            +E      + NL    L GN      +   F K   +  +                   
Sbjct: 228 LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 582 QWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAI---------PHSVENLF 632
                      +L   F      RL       + L    G+                 + 
Sbjct: 287 TLGHYGAYCCEDLPAPFAD----RLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 633 LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
                   V       K     ++     L        R
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  158 bits (402), Expect = 2e-41
 Identities = 62/408 (15%), Positives = 129/408 (31%), Gaps = 45/408 (11%)

Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-- 164
                  ++ L      I  +S    +G +                 ++ +++N  T   
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQGKK-----------------NIYLANNKITMLR 136

Query: 165 -----ELQSLESLDLSMNSIWTLP-DAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
                    ++ LDL +N I T+    +     +L +LNL  N + +V            
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA----- 191

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
               L+ LDLS+N    +  E F   + +  + L+ N L  +   AL    +L   +L  
Sbjct: 192 ---KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRG 246

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN---ELTEEWVN 335
           N         F  S++ +   +   ++  L        T   +         +L   + +
Sbjct: 247 NGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
                      +L+   ++  +L+     +  R + +     Q  ++            T
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-- 453
           L      L    SN   +   L            + ++A +  + LQ       +  E  
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMY 423

Query: 454 IPKVLRNLHSLKTLDLGDNLIT--EINNLSLNSLHQLAGLRLTENNIS 499
           + +     ++++  D+  +  T     N  L  L+  A L L   N +
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (342), Expect = 1e-33
 Identities = 64/478 (13%), Positives = 145/478 (30%), Gaps = 78/478 (16%)

Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
           I ++ +N +  K   + D+ + +       S   +  L L+ N +S IS       + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-----------------FPKL 556
           +LNL+SN + +      ++ S L  + L+ NY+ ++                      + 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 557 PNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
                + ++ N +           + +Q+LD+  N+I  +       S   L + +   N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
            + ++ G  +   ++ L L++N ++ + P  F     +T + L  N+L  I +    +  
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRF 235

Query: 675 LPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL 734
             + ++     +  N F C     +                 + TV  + +         
Sbjct: 236 SQNLEHF---DLRGNGFHCGTLRDFF-----------SKNQRVQTVAKQTVKKLTGQNEE 281

Query: 735 LKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYD 794
                                                 CT      + A   +     + 
Sbjct: 282 -------------------------------------ECTVPTLGHYGAYCCEDLPAPFA 304

Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
           ++L      +   L   G+    +       + + + +        T+ ++     +  I
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
            L      L E           L     Q    I +        + L++L+    R  
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 26/155 (16%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L+   N I  V      G    + ++L ++ +  + +        +  L L  N +  
Sbjct: 102 ETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHL--------------------KV 903
           +         + L  L LQYN I  +  +     L  L                      
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 904 LQLDHNRITSF-AVWHLSSQIQSITLTSNPWSCDC 937
           + L +N++         S  ++   L  N + C  
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
               +  + +    +        ++ L L+ + +  I         +L +L L  N L E
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
               + E L  LR L L  N +  +          ++ L   +N I+  +        ++
Sbjct: 73  TL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQG-KKN 124

Query: 926 ITLTSN 931
           I L +N
Sbjct: 125 IYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 24/245 (9%), Positives = 54/245 (22%), Gaps = 23/245 (9%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL--------- 155
              FQ+   +  +S+   K+  +   + R  + L+   L      +   +L         
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDL--RGNGFHCGTLRDFFSKNQR 263

Query: 156 --DISHNVFTD-------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
              ++             E                LP      L +L             
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
            T               R +D     + ++  +   R      L  +   L     +   
Sbjct: 324 ETERLEC--ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
               L          + +      QS       +      +           +   D+  
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 327 NELTE 331
           ++ T+
Sbjct: 442 HKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            EL L GN +  + +       KL++L L+S+ +    +     L  L  L L++N + E
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94

Query: 866 ----------------IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
                           I      R +  + +YL  NKI  + +      + ++ L L  N
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 910 RITSF---AVWHLSSQIQSITLTSN 931
            I +     +   S  ++ + L  N
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
           + +I  +  S ++            +  L L  N L++I   +      L  L L  N +
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF 914
               +    SL+ L+ L L++N +   
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 18/85 (21%), Positives = 34/85 (40%)

Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906
                   I ++ D+ L +      +   N++EL L  N +  IS       T L++L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
             N +         S ++++ L +N
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 6/156 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N I  V         KL+ L L+S+ +  +    F     +  + L +N+L  
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I        +NL    L+ N     + R F    + +V  +    +          +   
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTG-QNEEECTV 285

Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIR 961
            TL      C  D    F D L   +   H +   +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 1/132 (0%)

Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
             +   TG  + +              +    P       + RK+  +L    S  E + 
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
            +  N  +    +     +   +      R +    L  +   +    +    +   L  
Sbjct: 330 CERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 904 LQLDHNRITSFA 915
                       
Sbjct: 389 TLQQAVGQIELQ 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  228 bits (584), Expect = 2e-65
 Identities = 120/480 (25%), Positives = 192/480 (40%), Gaps = 44/480 (9%)

Query: 189 PLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
           PL S +    T  N++      +                 L   +     +   + L ++
Sbjct: 2   PLGSATITQDTPINQIFTDTALA-----------EKMKTVLGKTNVTDTVS--QTDLDQV 48

Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
             L      +  +    ++ LN+LT +N S N L +I P        L ++ + NN I  
Sbjct: 49  TTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367
           + P     LT L  L L NN++T    +      L  L  L ++ N ++ + +     L 
Sbjct: 105 ITP--LANLTNLTGLTLFNNQIT----DIDPLKNLTNLNRLELSSNTISDISA--LSGLT 156

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
            LQ L   N   +       A+L+ L  L +S+NK+  I    L  LT L  L   NN++
Sbjct: 157 SLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 211

Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
             I    L   T+L +  LNGN+L +I   L +L +L  LDL +N I+ +  LS   L +
Sbjct: 212 SDIT--PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLS--GLTK 266

Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
           L  L+L  N ISNIS      L+ LT L L  N+++ +      N  NL  + L  N ++
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 548 DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT 607
           DI  +   L  L  L    N +          ++ WL    NQIS+L     + +  R+T
Sbjct: 323 DISPV-SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT---PLANLTRIT 378

Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
               +    T    N   +      + N   + + P T     + T  D+  N     N+
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  209 bits (534), Expect = 9e-59
 Identities = 99/414 (23%), Positives = 176/414 (42%), Gaps = 30/414 (7%)

Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
               L       L   N+ +           +  +      I  +       L  L  ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 74

Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
            SNN+LT    +      L +LV + +  N++  +      +L  L  L L NNQI  I 
Sbjct: 75  FSNNQLT----DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 127

Query: 384 RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQD 443
            +   +L+NL+ L +S+N +  I +  L  LT+L  LS  N   +      L N T+L+ 
Sbjct: 128 -DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181

Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
             ++ NK+++I  VL  L +L++L   +N I++I  L    L  L  L L  N + +I  
Sbjct: 182 LDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG- 237

Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
                L+ LT L+LA+N+I  +        + L  ++L  N +++I  L   L  L  L 
Sbjct: 238 -TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-GLTALTNLE 293

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
           ++EN LE         +L +L ++ N IS++     + S  +L      +NK+++++  A
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVSSLA 350

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS 677
              ++  L   +N IS + P        +T++ L      N          +P+
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  205 bits (524), Expect = 2e-57
 Identities = 108/494 (21%), Positives = 197/494 (39%), Gaps = 59/494 (11%)

Query: 106 GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE 165
           G   +    +D       I  +   +   L +     L   N         ++  V   +
Sbjct: 1   GPLGSATITQD-----TPINQIFTDT--ALAEKMKTVLGKTN---------VTDTVSQTD 44

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
           L  + +L      I ++       L +L+ +N + N+L+++                L  
Sbjct: 45  LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNL--------TKLVD 94

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           + ++NN    +     + L+ L  L L  N +T +    L  L +L  L LS N + +I 
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS 150

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
               +    L+++   N   ++        LT L  LD+S+N++++     +  + L  L
Sbjct: 151 A--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI----SVLAKLTNL 201

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
             L    N+++ +       L  L  L L  NQ++ I   T ASL+NL  L ++NN++  
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK 465
           +    L  LT L+ L L  N++  I    L   T+L +  LN N+L +I   + NL +L 
Sbjct: 258 LA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLT 312

Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
            L L  N I++I+ +S  SL +L  L    N +S++S      L+ +  L+   N+I  +
Sbjct: 313 YLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL 368

Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD---LQ 582
                 N + +  + L+    T+    +    N+   N  +N+          +D     
Sbjct: 369 TP--LANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 583 WLDIHGNQISELGN 596
             DI  N  S    
Sbjct: 425 EPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  165 bits (421), Expect = 6e-44
 Identities = 95/395 (24%), Positives = 170/395 (43%), Gaps = 49/395 (12%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS---- 154
           + ++P   + L  L D+ +   +I +++      L  L  LTL  +N  TD   +     
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-NNQITDIDPLKNLTN 135

Query: 155 ---LDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
              L++S N  +D      L SL+ L          P      L +L  L+++ NK+S++
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI 192

Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
           +  +           NL  L  +NN    +       L+ L EL L GN L  +    L 
Sbjct: 193 SVLAKLT--------NLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG--TLA 240

Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
            L +LT L+L+ N + N+ P   +    L E+ L  N I+ ++P     LT L  L+L+ 
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
           N+L     + +  S L  L  L + +N ++ +       L +LQ L   NN++  +  ++
Sbjct: 297 NQLE----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
            A+L+N++ L   +N++  +    L +LT ++ L L++        N   N  S+ +   
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN-VSIPNTVK 405

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
           N       P  + +  S    D+  NL +  N +S
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 4e-39
 Identities = 78/366 (21%), Positives = 140/366 (38%), Gaps = 40/366 (10%)

Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDEL 166
             + L +L  L +    I ++S  +  GL  L+ L+     TD   ++           L
Sbjct: 129 PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKPLA----------NL 176

Query: 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
            +LE LD+S N +  +       L +L  L  T N++S++               NL  L
Sbjct: 177 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILT--------NLDEL 226

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
            L+ N    +     + L+ L +L L  N ++ L    L GL  LT L L  N + NI P
Sbjct: 227 SLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282

Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
                   L  + L  N +  ++P   + L  L  L L  N ++    + +  S L +L 
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS----DISPVSSLTKLQ 334

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L    NK++ + S    +L  +  L   +NQI  +     A+L+ +  L +++      
Sbjct: 335 RLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNA 390

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
             N   +++  + +      L  I    + +  S  +  +  N  +   +V        T
Sbjct: 391 PVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448

Query: 467 LDLGDN 472
           +  G  
Sbjct: 449 IGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 4e-12
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 29/210 (13%)

Query: 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------LDIS 158
              L  L +L +   +I N+S     GL  L  L L   N   D S +S       L + 
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN-ENQLEDISPISNLKNLTYLTLY 317

Query: 159 HNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN 213
            N  +D      L  L+ L    N +  +       L ++++L+   N++S++   +   
Sbjct: 318 FNNISDISPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLT 375

Query: 214 YDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV 273
                    +  L L++ ++ + P    + +S    +      L   A   +    S T 
Sbjct: 376 --------RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTE 425

Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
            +++ N         +  S+ +        
Sbjct: 426 PDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 8e-11
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T+L L  N+I         G  KL  L L ++ +  I      GL  L  L L++N+L +
Sbjct: 246 TDLDLANNQI--SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I       L+NL  L L +N I  IS     SLT L+ L   +N+++  +     + I  
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINW 357

Query: 926 ITLTSNPWS 934
           ++   N  S
Sbjct: 358 LSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 1e-10
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +  N++  +          L+ L   ++ +  I       L  L  L L+ N+L +
Sbjct: 180 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I       L NL +L L  N+I  ++      LT L  L+L  N+I++ +     + + +
Sbjct: 236 IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 291

Query: 926 ITLTSNP 932
           + L  N 
Sbjct: 292 LELNENQ 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 3e-09
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
           T L  D   I  +     +     L  +  +++ +  I       L +L+ + +++N++ 
Sbjct: 49  TTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA 103

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           +I       L NL  L L  N+I  I      +LT+L  L+L  N I+  
Sbjct: 104 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L L  N+I             L  L L+S+ +  I     +GL  L  L    N++T+
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTD 169

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           ++      L  L  L +  NK+  IS      LT+L+ L   +N+I+      + + +  
Sbjct: 170 LK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDE 225

Query: 926 ITLTSN 931
           ++L  N
Sbjct: 226 LSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            +     L  ++V      +   L ++  L+ D   +  I G   E L NL ++    N+
Sbjct: 24  AEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
           +  I+     +LT L  + +++N+I   
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIADI 105

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 1e-06
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 6/126 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L L  N I            KLQ LF  ++ V  + +     L  +  L    N++++
Sbjct: 312 TYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +       L  + +L L              +++    ++     + + A          
Sbjct: 368 LT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 926 ITLTSN 931
             +T N
Sbjct: 426 PDITWN 431

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  224 bits (572), Expect = 5e-64
 Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 38/395 (9%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTARCGINLRVL 226
            +  +DLS+NSI  L +  F  LQ L +L + Q      +   +F          +L +L
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL------SSLIIL 84

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNI 284
            L  N F  L    F+ L+ L+ L L    L    L+ +    L SL +L L  NN+  I
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 285 PPE-LFNQSRDLKEVYLQNNSINVLAPGIFNVLT--QLIVLDLSNNELTE------EWVN 335
            P   F   R    + L  N +  +              +L LS+  L +       W  
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY---RLQVLHLENNQIE--SIHRNTFASL 390
                    +  L+++ N   +  +  F D     ++Q L L N+     S     F   
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
            N     +  + +K                 L  +++  + ++   + T L+   L  N+
Sbjct: 265 DNFTFKGLEASGVK--------------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
           + +I       L  L  L+L  N +  I++    +L +L  L L+ N+I  +    F  L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             L  L L +N+++ V  G FD  ++L  I L  N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  219 bits (560), Expect = 2e-62
 Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 31/376 (8%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-ILTFLADHALDGLNSLTVLNLSVNN 280
           ++  +DLS NS   L    FSRL  LQ L ++       + ++   GL+SL +L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSIN--VLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
            + +    FN   +L+ + L   +++  VL+   F  LT L +L L +N + +    A+ 
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASF 149

Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLY--RLQVLHLENNQIESIHRN--------TFA 388
           F  + R  VL++ +NK+  +      +       +L L +  ++ ++             
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVL-------------SLDNNELEYIEENAL 435
             +++ TL +S N  K   +       A + +             S  +   +  +    
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 436 KN--STSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
           K   ++ ++   L+ +K+  + K V  +   L+ L L  N I +I++ +   L  L  L 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GG 551
           L++N + +I   +FE L  L +L+L+ N I+ +   +F    NL  + LD N L  +  G
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 552 LFPKLPNLVWLNISEN 567
           +F +L +L  + +  N
Sbjct: 390 IFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  209 bits (533), Expect = 7e-59
 Identities = 91/387 (23%), Positives = 148/387 (38%), Gaps = 39/387 (10%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
            +  + +    I  L+  SF  L+ L+ L +     +  T  L I +N F   L SL  L
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKV-----EQQTPGLVIRNNTF-RGLSSLIIL 84

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTARCGINLRVLDLSN 230
            L  N    L    F  L +L  L LTQ  L         F          +L +L L +
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT------SLEMLVLRD 138

Query: 231 NSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNS--LTVLNLSVNNLVNIPP- 286
           N+   +     F  + R   L L  N +  + +  L        T+L LS   L ++   
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 287 -------ELFNQSRDLKEVYLQNNSINVLAPGIF---NVLTQLIVLDLSNNELTEEWVN- 335
                      ++  +  + L  N         F      T++  L LSN+         
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 336 -------AATFSGLHR--LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
                    TF GL    +   +++ +K+  L  S+F     L+ L L  N+I  I  N 
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
           F  L++L  L +S N L  I+S   ++L  L VL L  N +  + + +     +L++  L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378

Query: 447 NGNKLTEIPK-VLRNLHSLKTLDLGDN 472
           + N+L  +P  +   L SL+ + L  N
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  204 bits (522), Expect = 2e-57
 Identities = 94/378 (24%), Positives = 144/378 (38%), Gaps = 44/378 (11%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
           + L+  SF  L DL+ L VE    G  +   +FRGL  L  L L  +N          + 
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYN------QFLQLE 95

Query: 159 HNVFTDELQSLESLDLSMNSI--WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
              F + L +LE L L+  ++    L    F PL SL  L L  N +  +   SF     
Sbjct: 96  TGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRL--SRLQELYLQGNILTFL--------ADHALD 266
                   VLDL+ N   S+  E            L L    L  +              
Sbjct: 155 -----RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY-------------LQNNSINVLAPGIF 313
              S+T L+LS N       + F  +    ++                + +        F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 314 NVL--TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV 371
             L  + +   DLS +++    +  + FS    L  L +A N++NK+D + F  L  L  
Sbjct: 270 KGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           L+L  N + SI    F +L  L  L +S N ++ +   S   L  L  L+LD N+L+ + 
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 432 ENALKNSTSLQDFHLNGN 449
           +      TSLQ   L+ N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  187 bits (476), Expect = 3e-51
 Identities = 100/524 (19%), Positives = 170/524 (32%), Gaps = 117/524 (22%)

Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVF 506
              L ++P++  ++     +DL  N I E+N  S + L  L  L++ +      I    F
Sbjct: 19  NRGLHQVPELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI---GGLFPKLPNLVWLN 563
             LS L IL L  N+  ++E G F+  +NL  + L    L      G  F  L +L    
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL---- 131

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
                             + L +  N I ++            ++F      +       
Sbjct: 132 ------------------EMLVLRDNNIKKIQP---------ASFFL----NMRRFH--- 157

Query: 624 IPHSVENLFLTNNLISKVQPYTF--FMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
                  L LT N +  +       F   + T + L    L+++N+  L      +    
Sbjct: 158 ------VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN---- 207

Query: 682 PDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSN 741
                       + ++  L                        L        + K     
Sbjct: 208 ---------PFKNTSITTLD-----------------------LSGNGFKESMAKRFFDA 235

Query: 742 QFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRI 801
               + ++      +             P+N T                G   + +    
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK--------------GLEASGV---- 277

Query: 802 PMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
                   L  ++I  +    F     L+ L L  + +  I +  F GL  L+ L L  N
Sbjct: 278 ----KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWH 918
            L  I    FE L+ L  L L YN I  + +++FL L +LK L LD N++ S        
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
           L+S +Q I L +NPW C C   +    +L ++          +C
Sbjct: 394 LTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG--SAKC 434

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  141 bits (358), Expect = 8e-36
 Identities = 77/414 (18%), Positives = 140/414 (33%), Gaps = 91/414 (21%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGN 449
           ++++ + +S N +  +   S   L  L  L ++       I  N  +  +SL    L+ N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 450 KLTEIP-KVLRNLHSLKTLDLGDNLITE--INNLSLNSLHQLAGLRLTENNISNIS-KGV 505
           +  ++       L +L+ L L    +    ++      L  L  L L +NNI  I     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDN--NSNLVAIRLDGNYLTDIG---------GLFP 554
           F  +    +L+L  NK++ +      N    +   +RL    L D+          G   
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 555 KLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQISELG-----------NYF 598
           K  ++  L++S N       + F  A+    +Q L +  +                   F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 599 EIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVD 656
           +      +   D S +K+  L  +   H   +E L L  N I+K+    F+   +L +++
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 657 LVGNRLKNI------NQTALR--------ISPLPSH------------------KNIPDF 684
           L  N L +I      N   L         I  L                     K++PD 
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 685 -----------YIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
                      ++  NP+ C C       +WL         NK +  +  +  C
Sbjct: 390 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL---------NKNSQKEQGSAKC 434

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (283), Expect = 3e-26
 Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGR 826
             + C+             C     +  L   P +P     + L  N I  +   SF   
Sbjct: 4   GTSECSVIG------YNAICI----NRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRL 53

Query: 827 KKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
           + LQ L +        I N TF GL  LIIL+LD N+  ++    F  L NL  L L   
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113

Query: 886 KI--IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCD 938
            +    +S   F  LT L++L L  N I      + +    +   + LT N     C+
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 2e-22
 Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 15/196 (7%)

Query: 90  RIECGDMLFFQSSLSPGSFQTLI----DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRT 145
             +      F  +++    Q+LI         S       +    +F+GL      T   
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 146 HNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
             +        +  +VF      LE L L+ N I  + D  F  L  L  LNL+QN L +
Sbjct: 283 SKSKIFA----LLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL 265
           + +  F N D       L VLDLS N   +L  + F  L  L+EL L  N L  + D   
Sbjct: 338 IDSRMFENLD------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 266 DGLNSLTVLNLSVNNL 281
           D L SL  + L  N  
Sbjct: 392 DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 7e-15
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            +L    F    DL+ L++   +I  +   +F GL  L  L L + N   S     I   
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL-SQNFLGS-----IDSR 341

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
           +F + L  LE LDLS N I  L D  F  L +L  L L  N+L +V    F         
Sbjct: 342 MF-ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT----- 395

Query: 221 INLRVLDLSNNSFD 234
            +L+ + L  N +D
Sbjct: 396 -SLQKIWLHTNPWD 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  214 bits (546), Expect = 7e-60
 Identities = 103/511 (20%), Positives = 187/511 (36%), Gaps = 35/511 (6%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
              +L++S N    L       LS+L+ L +  N + +L          L  L+LS N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
           V I     + + +LK + L  N+ + L     F  ++QL  L LS   L +     ++  
Sbjct: 82  VKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVL 133

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
            +  L +  +              D   LQ  + E+  I       F  + ++    ++N
Sbjct: 134 PIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
            +L  I+    D+  +  +     + L  ++ N   ++ +L +     N    I +++ +
Sbjct: 192 LELSNIKCVLEDNKCSYFL-----SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 461 LH----SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
                 S+  + L   L     + S  SL  L+  ++  +        ++E  S + I N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYA 575
              +  + V        S  + +    N LTD        L  L  L +  N L+     
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 576 LIPAD----LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL 631
                    LQ LDI  N +S      +      L   + SSN LT+     +P  ++ L
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 632 FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF 691
            L +N I  + P        L  +++  N+LK++         L S + I   ++  NP+
Sbjct: 427 DLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIF--DRLTSLQKI---WLHTNPW 480

Query: 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
            C C      S  +NK   K    +  +  C
Sbjct: 481 DCSCPRIDYLSRWLNKNSQK----EQGSAKC 507

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  197 bits (502), Expect = 4e-54
 Identities = 96/465 (20%), Positives = 173/465 (37%), Gaps = 41/465 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           S L      +L  L+ L +   +I  L    F+  ++L+               LD+SHN
Sbjct: 34  SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY--------------LDLSHN 79

Query: 161 VFT----DELQSLESLDLSMNSIWTLPD-AIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
                      +L+ LDLS N+   LP    F  +  L +L L+   L   +    ++ +
Sbjct: 80  KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
            ++  + L          + L          L  ++       F+ D ++  + +L + N
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQ---DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 276 LS----VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL-----TQLIVLDLSN 326
           +      N        L     + K   L  N+I         +L     T +    +SN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 327 NELTEEW---VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
            +L  +        + + L  L +  +  +      S I++    + + +   +    +H
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 384 RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSL 441
               + +S    L  SNN L      +   LT L  L L  N+L+ + +         SL
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 442 QDFHLNGNKLTEI--PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
           Q   ++ N ++            SL +L++  N++T+     L    ++  L L  N I 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           +I K V  KL  L  LN+ASN+++ V  G FD  ++L  I L  N
Sbjct: 435 SIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  153 bits (388), Expect = 2e-39
 Identities = 63/386 (16%), Positives = 133/386 (34%), Gaps = 21/386 (5%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
           F +      F  +  LK L +    +   S      L   K L +             + 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
                   +SL  +  +      + D     + +L   N+      N  ++  S     +
Sbjct: 162 DF----NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 219 CGINLRVLDLSNNSF---DSLPAEGFSRLSRLQELYLQGNILTFL-----ADHALDGLNS 270
               L  L L+N        +        + +    +    L         D++   L +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
           L++  +  +        ++    ++       +   ++     + ++  + LD SNN LT
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLD--SSIFKDLYRLQVLHLENNQIESI-HRNTF 387
           +          L  L  L +  N++ +L   + +   +  LQ L +  N +     +   
Sbjct: 338 DTVFEN--CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
           +   +L +L MS+N L       L     + VL L +N+++ I +  +K   +LQ+ ++ 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQVVK-LEALQELNVA 452

Query: 448 GNKLTEIPK-VLRNLHSLKTLDLGDN 472
            N+L  +P  +   L SL+ + L  N
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (304), Expect = 1e-28
 Identities = 88/545 (16%), Positives = 174/545 (31%), Gaps = 87/545 (15%)

Query: 438 STSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
           S      +++ N ++E+    + +L  L+ L +  N I  ++        +L  L L+ N
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKV-EAGTFDNNSNLVAIRLDGNYLTDIGGLFPK 555
            +  IS         L  L+L+ N    +     F N S L  + L   +L         
Sbjct: 80  KLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLP 134

Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNK 615
           + +L    +   L E +     P  LQ  +     I    N  E    L ++    ++ +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN-KEFHFILDVSVKTVANLE 193

Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
           L+ +      +         ++++K+Q         L  ++   N         +RI  L
Sbjct: 194 LSNIKCVLEDNKCSYFL---SILAKLQTNPKLSNLTLNNIETTWNSF-------IRILQL 243

Query: 676 PSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILL 735
             H  +  F I     Q   + +       + +    + V  D             + + 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-------FPQSYIY 296

Query: 736 KEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDN 795
           +   +      +  +   + H          M CP+  + +  + +  N++  +      
Sbjct: 297 EIFSNMNIK-NFTVSGTRMVH----------MLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 796 QLPPRIPMDATELYLDGNRIPVV--GSHSFIGRKKLQILFLNSSHVETIHNK-TFNGLKE 852
            L      +   L L  N++  +   +      K LQ L ++ + V     K   +  K 
Sbjct: 346 HLT-----ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 853 LIILRLDDNRLTEIRGYEFE---------------------RLENLRELYLQYNKIIYIS 891
           L+ L +  N LT+                            +LE L+EL +  N++  + 
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460

Query: 892 NRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR 951
           +  F  LT L                      Q I L +NPW C C   +    +L ++ 
Sbjct: 461 DGIFDRLTSL----------------------QKIWLHTNPWDCSCPRIDYLSRWLNKNS 498

Query: 952 SSVHD 956
                
Sbjct: 499 QKEQG 503

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  208 bits (532), Expect = 1e-58
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 5/229 (2%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           N R L+L  N+   + A+ F  L  L+ L L  N +  +   A +GL SL  L L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFS 340
             IP   F     L+E++L+NN I  +    FN +  L+ LDL    +L    ++   F 
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFE 193

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
           GL  L  LN+    +  + +     L  L+ L +  N    I   +F  LS+L  L + N
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           +++  IE N+ D L +L  L+L +N L  +  +       L + HL+ N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  203 bits (517), Expect = 1e-56
 Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 9/257 (3%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
            C      +  +      +P    S     + L L  N +  +       L+ L VL L 
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N++  I    FN    L  + L +N + V+  G F  L++L  L L NN +    + + 
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--IPSY 165

Query: 338 TFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
            F+ +  L+ L++    K+  +    F+ L+ L+ L+L    I+ +       L  L  L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEEL 223

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
            MS N    I   S   L++L  L + N+++  IE NA     SL + +L  N L+ +P 
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 457 -VLRNLHSLKTLDLGDN 472
            +   L  L  L L  N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  175 bits (446), Expect = 2e-47
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 17/232 (7%)

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
             + L+L  N I+ I  +TF  L +L  L +  N +++IE  + + L +L+ L L +N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
             I   A +  + L++  L  N +  IP      + SL  LDLG+   +  I+  +   L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
             L  L L   NI ++       L  L  L ++ N   ++  G+F   S+L  + +  + 
Sbjct: 196 FNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD-------LQWLDIHGN 589
           ++ I    F  L +LV LN++ N L       +P D       L  L +H N
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSS-----LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  172 bits (438), Expect = 2e-46
 Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 42/259 (16%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           +T  L++  N            L  LE L L  NSI  +    F  L SL+ L L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG-NILTFLAD 262
           + + + +F           LR L L NN  +S+P+  F+R+  L  L L     L ++++
Sbjct: 136 TVIPSGAFEYL------SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
            A +GL +L  LNL + N+ ++P                              L  L  L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPN--------------------------LTPLVGLEEL 223

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
           ++S N   E  +   +F GL  L  L +  ++++ ++ + F  L  L  L+L +N + S+
Sbjct: 224 EMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 383 HRNTFASLSNLHTLIMSNN 401
             + F  L  L  L + +N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  160 bits (407), Expect = 2e-42
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
             +   +F+ L  L+ L +    I  +  G+F GL  L TL L   N       L  I  
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDN------WLTVIPS 140

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTAR 218
             F   L  L  L L  N I ++P   F  + SL  L+L +  KL  ++  +F       
Sbjct: 141 GAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF--- 196

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
              NL+ L+L   +   +P    + L  L+EL + GN    +   +  GL+SL  L +  
Sbjct: 197 ---NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           + +  I    F+    L E+ L +N+++ L   +F  L  L+ L L +N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  156 bits (395), Expect = 9e-41
 Identities = 70/341 (20%), Positives = 127/341 (37%), Gaps = 74/341 (21%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S            L+E+P+ +    + + L+L +N I  I   +   LH L  L+L  N+
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
           I  I  G F  L+ L  L L  N +  + +G F+  S L  + L  N +  I    F ++
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 557 PNLVWLNISE-NLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTY 608
           P+L+ L++ E   LE+     I          L++L++    I ++              
Sbjct: 171 PSLMRLDLGELKKLEY-----ISEGAFEGLFNLKYLNLGMCNIKDM-------------- 211

Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQT 668
                  LT L        +E L ++ N   +++P +F    +L ++ ++ +++  I + 
Sbjct: 212 -----PNLTPLV------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 669 AL--------------RISPLP-----SHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
           A                +S LP       + + + ++  NP+ CDC++ WL        R
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL----AWWLR 316

Query: 710 NKPNLVDLDTVTCKLLYNRANPAIL----LKEAHSNQFLCE 746
                       C        P  +    L E     F C 
Sbjct: 317 EYIPTNSTCCGRC------HAPMHMRGRYLVEVDQASFQCS 351

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  147 bits (372), Expect = 9e-38
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 18/208 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
             +  G+F  L  L  L +    +  + +G+F  L KL+ L LR +N       +  I  
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NN------PIESIPS 164

Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
             F   + SL  LDL  +  +  + +  F  L +L YLNL    + ++   +        
Sbjct: 165 YAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV----- 218

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
               L  L++S N F  +    F  LS L++L++  + ++ +  +A DGL SL  LNL+ 
Sbjct: 219 ---GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
           NNL ++P +LF   R L E++L +N  N
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  126 bits (318), Expect = 8e-31
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 8/190 (4%)

Query: 754 LCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGN 813
           LC      A      CP+ C+C      + + + C+  G   ++P  IP +   L L  N
Sbjct: 31  LCAAIAAAASAGPQNCPSVCSCS----NQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMEN 85

Query: 814 RIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFER 873
            I ++ + +F     L++L L  + +  I    FNGL  L  L L DN LT I    FE 
Sbjct: 86  NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145

Query: 874 LENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH-NRITSFAVWHLS--SQIQSITLTS 930
           L  LREL+L+ N I  I +  F  +  L  L L    ++   +         ++ + L  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 931 NPWSCDCDFT 940
                  + T
Sbjct: 206 CNIKDMPNLT 215

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 3e-20
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 26/157 (16%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L    I  +   +      L+ L ++ +H   I   +F+GL  L  L + +++++ 
Sbjct: 199 KYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I    F+ L +L EL L +N +  + +  F  L +L  L L H                 
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH----------------- 299

Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
                NPW+CDCD       +L+    + +     RC
Sbjct: 300 -----NPWNCDCDILW-LAWWLREYIPT-NSTCCGRC 329

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  205 bits (524), Expect = 8e-58
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 5/229 (2%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           N R+L+L  N    +    F  L  L+ L L  N +  +   A +GL +L  L L  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFS 340
             IP   F     LKE++L+NN I  +    FN +  L  LDL     L+   ++   F 
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFE 182

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
           GL  L  LN+A   + ++ +     L +L  L L  N + +I   +F  L +L  L M  
Sbjct: 183 GLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           ++++ IE N+ D+L +L  ++L +N L  +  +       L+  HL+ N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  204 bits (520), Expect = 3e-57
 Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 9/257 (3%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
            C      +     +   +P    +     + L L  N +  +  ++   L  L +L LS
Sbjct: 40  SCSNQFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N++  I    FN   +L  + L +N +  +  G F  L++L  L L NN +    + + 
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IPSY 154

Query: 338 TFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
            F+ +  L  L++    +++ +    F+ L  L+ L+L    +  I       L  L  L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDEL 212

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP- 455
            +S N L  I   S   L  L  L +  ++++ IE NA  N  SL + +L  N LT +P 
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 456 KVLRNLHSLKTLDLGDN 472
            +   LH L+ + L  N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  174 bits (442), Expect = 6e-47
 Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 17/232 (7%)

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
             ++L+L  NQI+ I  N+F  L +L  L +S N ++ IE  + + L  L+ L L +N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
             I   A    + L++  L  N +  IP      + SL+ LDLG+   ++ I+  +   L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
             L  L L   N+  I       L  L  L+L+ N +  +  G+F    +L  + +  + 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD-------LQWLDIHGN 589
           +  I    F  L +LV +N++ N L       +P D       L+ + +H N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTL-----LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  173 bits (439), Expect = 1e-46
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 42/259 (16%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           +T  L++  N            L+ LE L LS N I T+    F  L +L+ L L  N+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG-NILTFLAD 262
           + +   +F           L+ L L NN  +S+P+  F+R+  L+ L L     L+++++
Sbjct: 125 TTIPNGAFVYL------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
            A +GL++L  LNL++ NL  IP                              L +L  L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPN--------------------------LTPLIKLDEL 212

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
           DLS N L+   +   +F GL  L  L +  +++  ++ + F +L  L  ++L +N +  +
Sbjct: 213 DLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 383 HRNTFASLSNLHTLIMSNN 401
             + F  L +L  + + +N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  162 bits (411), Expect = 6e-43
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 18/229 (7%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
             +   SF+ L  L+ L +    I  +  G+F GL  L TL L   N       L  I +
Sbjct: 77  QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL-FDN------RLTTIPN 129

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTAR 218
             F   L  L+ L L  N I ++P   F  + SL  L+L +  +LS ++  +F       
Sbjct: 130 GAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS--- 185

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
              NLR L+L+  +   +P    + L +L EL L GN L+ +   +  GL  L  L +  
Sbjct: 186 ---NLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           + +  I    F+  + L E+ L +N++ +L   +F  L  L  + L +N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  154 bits (390), Expect = 3e-40
 Identities = 67/334 (20%), Positives = 124/334 (37%), Gaps = 60/334 (17%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S            L E+P  +    + + L+L +N I  I   S   L  L  L+L+ N+
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
           I  I  G F  L+ L  L L  N++  +  G F   S L  + L  N +  I    F ++
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 557 PNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYFDASSNK 615
           P+L  L++ E                       ++S +    FE      L Y + +   
Sbjct: 160 PSLRRLDLGEL---------------------KRLSYISEGAFE--GLSNLRYLNLAMCN 196

Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL----- 670
           L E+        ++ L L+ N +S ++P +F    +L ++ ++ ++++ I + A      
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 671 ---------RISPLP-----SHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVD 716
                     ++ LP        ++   ++  NP+ C+C++ WL  +     ++      
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI----KDMAPSNT 312

Query: 717 LDTVTCKLLYNRANPAIL----LKEAHSNQFLCE 746
                C        P  L    + E   N F C 
Sbjct: 313 ACCARC------NTPPNLKGRYIGELDQNYFTCY 340

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  146 bits (370), Expect = 1e-37
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 18/208 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
            ++  G+F  L +L  L +   ++  +  G+F  L KLK L LR +N       +  I  
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NN------PIESIPS 153

Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
             F   + SL  LDL  +  +  + +  F  L +L YLNL    L  +   +        
Sbjct: 154 YAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL------ 206

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
             I L  LDLS N   ++    F  L  LQ+L++  + +  +  +A D L SL  +NL+ 
Sbjct: 207 --IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
           NNL  +P +LF     L+ ++L +N  N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  121 bits (305), Expect = 3e-29
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI 824
              TCP+ C+C +    + + + C       ++P  I  +   L L  N+I ++  +SF 
Sbjct: 31  SAQTCPSVCSCSN----QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFK 85

Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
             + L+IL L+ +H+ TI    FNGL  L  L L DNRLT I    F  L  L+EL+L+ 
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 885 NKIIYISNRTFLSLTHLKVLQLDH-NRITSFAVWHLS--SQIQSITLTSN 931
           N I  I +  F  +  L+ L L    R++  +       S ++ + L   
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 4e-23
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 55/208 (26%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRLT 864
             L L  NR+  + + +F+   KL+ L+L ++ +E+I +  FN +  L  L L +  RL+
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
            I    FE L NLR L L    +  I       L  L  L L  N +++    +   L  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 922 ---------QIQSI--------------------------------------TLTSNPWS 934
                    QIQ I                                       L  NPW+
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

Query: 935 CDCDFTEKFRDYLQRSRSSVHDISQIRC 962
           C+CD       +++    S       RC
Sbjct: 293 CNCDILW-LSWWIKDMAPSNTAC-CARC 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  205 bits (523), Expect = 2e-57
 Identities = 96/505 (19%), Positives = 193/505 (38%), Gaps = 68/505 (13%)

Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG---- 220
               L+      +++  +P      ++S +      ++    A                 
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 221 ---INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
                   L+L+N    SLP         L+ L    N LT L       L SL V N +
Sbjct: 68  CLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNN 122

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
           +  L ++PP L       + + + NN +  L P + N  + L ++D+ NN L +      
Sbjct: 123 LKALSDLPPLL-------EYLGVSNNQLEKL-PELQN-SSFLKIIDVDNNSLKK------ 167

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
                  L  +    N++ +L     ++L  L  ++ +NN ++ +         +L +++
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL----PDLPLSLESIV 221

Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
             NN L+ +    L +L  L+ +  DNN L+ + +       SL+  ++  N LT++P++
Sbjct: 222 AGNNILEEL--PELQNLPFLTTIYADNNLLKTLPDLP----PSLEALNVRDNYLTDLPEL 275

Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
            ++L  L   +   + ++E+          L  L  + N I ++     +    L  LN+
Sbjct: 276 PQSLTFLDVSENIFSGLSEL-------PPNLYYLNASSNEIRSLC----DLPPSLEELNV 324

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
           ++NK+ ++ A        L  +    N+L ++        NL  L++  N L  F    I
Sbjct: 325 SNNKLIELPA----LPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPLREFPD--I 375

Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
           P  ++ L ++ + ++E+    +      L      +N L E     IP SVE+L + +  
Sbjct: 376 PESVEDLRMN-SHLAEVPELPQ-----NLKQLHVETNPLREFP--DIPESVEDLRMNSER 427

Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRL 662
           +     +       L       +  
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  174 bits (444), Expect = 5e-47
 Identities = 87/477 (18%), Positives = 170/477 (35%), Gaps = 68/477 (14%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT- 163
           P   + +    +    + +    +       R++    LR    D     L++++   + 
Sbjct: 27  PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR-DCLDRQAHELELNNLGLSS 85

Query: 164 --DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
             +    LESL  S NS+  LP+     L+SL   N     LS++               
Sbjct: 86  LPELPPHLESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSDLPP------------- 131

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
            L  L +SNN  + LP       S L+ + +  N L  L     D   SL  +    N L
Sbjct: 132 LLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQL 185

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +P         L  +Y  NNS+  L     ++   L  +   NN L E          
Sbjct: 186 EELPE--LQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEE----LPELQN 235

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           L  L  +    N +  L          L+ L++ +N +  +         +L  L +S N
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLP----ELPQSLTFLDVSEN 287

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
               +          L  L+  +NE+  + +       SL++ +++ NKL E+P      
Sbjct: 288 IFSGLSE----LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPA---LP 336

Query: 462 HSLKTLDLGDNLITEIN---------NLSLNSLHQLAGL--RLTENNISNISKGVFEKLS 510
             L+ L    N + E+          ++  N L +   +   + +  +++    V E   
Sbjct: 337 PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
            L  L++ +N +++      D   ++  +R++   + D      +  + +  ++ E+
Sbjct: 397 NLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  162 bits (413), Expect = 5e-43
 Identities = 75/386 (19%), Positives = 134/386 (34%), Gaps = 70/386 (18%)

Query: 155 LDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
            + +    +D    LE L +S N +  LP+        L  +++  N L  +        
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPP--- 173

Query: 215 DTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH----------- 263
                  +L  +   NN  + LP      L  L  +Y   N L  L D            
Sbjct: 174 -------SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224

Query: 264 -------ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL 316
                   L  L  LT +    N L  +P    +    L+ + +++N +  L     + L
Sbjct: 225 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPELPQS-L 279

Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
           T L V +   + L+E             L  LN + N++     S+      L+ L++ N
Sbjct: 280 TFLDVSENIFSGLSEL---------PPNLYYLNASSNEIR----SLCDLPPSLEELNVSN 326

Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
           N++  +     A    L  LI S N L  +          L  L ++ N L    +    
Sbjct: 327 NKLIEL----PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD---- 374

Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
              S++D  +N + L E+P++ +N   LK L +  N + E  ++       +  LR+   
Sbjct: 375 IPESVEDLRMN-SHLAEVPELPQN---LKQLHVETNPLREFPDI----PESVEDLRMNSE 426

Query: 497 NISNISKGVFEKLSVLTILNLASNKI 522
            + +  +   E    L       +  
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  158 bits (401), Expect = 2e-41
 Identities = 70/367 (19%), Positives = 130/367 (35%), Gaps = 67/367 (18%)

Query: 154 SLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
            L +S+N             L+ +D+  NS+  LPD       SL ++    N+L  +  
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE 190

Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL 268
                         L  +   NNS   LP         L+ +    NIL  L +  L  L
Sbjct: 191 LQNLP--------FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNL 236

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
             LT +    N L  +P    +    L+ + +++N +  L     + LT L V +   + 
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPELPQS-LTFLDVSENIFSG 291

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
           L+E             L  LN + N++     S+      L+ L++ NN++  +     A
Sbjct: 292 LSEL---------PPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLIEL----PA 334

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKN--------- 437
               L  LI S N L  +          L  L ++ N L    +   ++++         
Sbjct: 335 LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390

Query: 438 ----STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
                 +L+  H+  N L E P +     S++ L +    + +    +  +  +L     
Sbjct: 391 VPELPQNLKQLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 494 TENNISN 500
             ++  +
Sbjct: 448 EHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  151 bits (383), Expect = 4e-39
 Identities = 87/422 (20%), Positives = 165/422 (39%), Gaps = 59/422 (13%)

Query: 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
            + LQE     + LT +     + + S T    + +      P    + R++    L++ 
Sbjct: 10  NTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 304 SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIF 363
                      +  Q   L+L+N  L+              L  L  + N + +L     
Sbjct: 69  -----------LDRQAHELELNNLGLSS------LPELPPHLESLVASCNSLTELPELPQ 111

Query: 364 KDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLD 423
             L  L V +     +  +          L  L +SNN+L+++    L + + L ++ +D
Sbjct: 112 S-LKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVD 161

Query: 424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN 483
           NN L+ + +       SL+      N+L E+P+ L+NL  L  +   +N + ++ +    
Sbjct: 162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPD---- 212

Query: 484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
               L  +    N +  +     + L  LT +   +N ++ +     D   +L A+ +  
Sbjct: 213 LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRD 266

Query: 544 NYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQ 603
           NYLTD+  L   L  L       + L       +P +L +L+   N+I  L      +  
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSL-----CDLP 316

Query: 604 LRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
             L   + S+NKL EL   A+P  +E L  + N +++V P       NL ++ +  N L+
Sbjct: 317 PSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEV-PELP---QNLKQLHVEYNPLR 370

Query: 664 NI 665
             
Sbjct: 371 EF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (369), Expect = 3e-37
 Identities = 85/399 (21%), Positives = 150/399 (37%), Gaps = 55/399 (13%)

Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
               L       +NL  +P E  N  +   E Y   +     AP       ++ V  L +
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
                            +   L +    ++ L          L+ L    N +  +    
Sbjct: 68  CLDR-------------QAHELELNNLGLSSLPELPPH----LESLVASCNSLTELP--- 107

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
                +L +L++ NN LK +          L  L + NN+LE + E  L+NS+ L+   +
Sbjct: 108 -ELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDV 160

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
           + N L ++P +  +L   + +  G+N + E+  L   +L  L  +    N++  +     
Sbjct: 161 DNNSLKKLPDLPPSL---EFIAAGNNQLEELPELQ--NLPFLTAIYADNNSLKKL----P 211

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISE 566
           +    L  +   +N ++++      N   L  I  D N L     L    P+L  LN+ +
Sbjct: 212 DLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRD 266

Query: 567 NLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH 626
           N L       +P  L +LD+  N  S L           L Y +ASSN++  L     P 
Sbjct: 267 NYLTDLP--ELPQSLTFLDVSENIFSGLSELPP-----NLYYLNASSNEIRSLCDL--PP 317

Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
           S+E L ++NN + ++        P L R+    N L  +
Sbjct: 318 SLEELNVSNNKLIELPALP----PRLERLIASFNHLAEV 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 5e-14
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 44/216 (20%)

Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTM-----SLDISHNVFT---DE 165
           L+ L+V    + +L     + L  L         +  S +      L+ S N      D 
Sbjct: 259 LEALNVRDNYLTDLPE-LPQSLTFLDVSEN--IFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
             SLE L++S N +  LP         L  L  + N L+ V               NL+ 
Sbjct: 316 PPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQ----------NLKQ 361

Query: 226 LDLSNNSFDSLPAEGFS---------------RLSRLQELYLQGNILTFLADHALDGLNS 270
           L +  N     P    S                   L++L+++ N L    D       S
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPES 417

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN 306
           +  L ++   +V+        +  L++   +++  +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 793 YDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKE 852
               L   +P     L +  N++  +          L+I+ ++++ ++ +     +    
Sbjct: 122 NLKALS-DLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPS 174

Query: 853 LIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
           L  +   +N+L E+   E + L  L  +Y   N +  + +        L+ +   +N + 
Sbjct: 175 LEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE 228

Query: 913 SFAVWHLSSQIQSITLTSN 931
                     + +I   +N
Sbjct: 229 ELPELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 2e-07
 Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             +    N++  +          L  ++ +++ ++ +     +    L  +   +N L E
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEE 229

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +   E + L  L  +Y   N +  + +        L+ L +  N +T      L   +  
Sbjct: 230 LP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP--ELPQSLTF 281

Query: 926 ITLTSN 931
           + ++ N
Sbjct: 282 LDVSEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 793 YDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGL 850
            DN L   P +P   T L +  N    +          L  L  +S+ + ++     +  
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLP 316

Query: 851 KELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
             L  L + +N+L E+          L  L   +N +  +         +LK L +++N 
Sbjct: 317 PSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNP 368

Query: 911 ITSF 914
           +  F
Sbjct: 369 LREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWST--MSLDISHNVFT---DELQS 168
           LK L VE+  +          +  L+  +      +       L +  N      D  +S
Sbjct: 359 LKQLHVEYNPLREFPD-IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417

Query: 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
           +E L ++   +    +        L       +   +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  201 bits (514), Expect = 2e-57
 Identities = 88/404 (21%), Positives = 165/404 (40%), Gaps = 58/404 (14%)

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
             +L+ L    N++   A  +                 L   S   +       L  + +
Sbjct: 2   AATLATLPAPINQIFPDADLA-----------EGIRAVLQKASVTDVV--TQEELESITK 48

Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
           L + G  +  +    ++ L +L  LNL+ N + +I P   +    L  +Y+  N I  ++
Sbjct: 49  LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS 104

Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
                 LT L  L L+ + ++    + +  + L ++  LN+  N      S +   +  L
Sbjct: 105 A--LQNLTNLRELYLNEDNIS----DISPLANLTKMYSLNLGANHNLSDLSPLSN-MTGL 157

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             L +  ++++ +     A+L++L++L ++ N+++ I    L SLT+L   +   N++  
Sbjct: 158 NYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
           I    + N T L    +  NK+T++   L NL  L  L++G N I++IN +    L +L 
Sbjct: 214 IT--PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVK--DLTKLK 268

Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
            L +  N IS+IS  V   LS L  L L +N++   +       +NL  + L  N++TDI
Sbjct: 269 MLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 550 GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
             L   L  +                         D     I +
Sbjct: 327 RPL-ASLSKM----------------------DSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  196 bits (501), Expect = 9e-56
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 43/387 (11%)

Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLD 173
              L+     I  +   +   L +     L+  +         ++  V  +EL+S+  L 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKAS---------VTDVVTQEELESITKLV 50

Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
           ++   + ++       L +L YLNL  N++++++  S            L  L +  N  
Sbjct: 51  VAGEKVASIQG--IEYLTNLEYLNLNGNQITDISPLSNLV--------KLTNLYIGTNKI 100

Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
             + A     L+ L+ELYL  + ++ ++   L  L  +  LNL  N+ ++    L N + 
Sbjct: 101 TDISA--LQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
            L  + +  + +  + P     LT L  L L+ N++     + +  + L  L       N
Sbjct: 157 -LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE----DISPLASLTSLHYFTAYVN 209

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  +      ++ RL  L + NN+I  +  +  A+LS L  L +  N++  I   ++  
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKD 263

Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
           LT L +L++ +N++  I    L N + L    LN N+L  E  +V+  L +L TL L  N
Sbjct: 264 LTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 473 LITEINNLSLNSLHQLAGLRLTENNIS 499
            IT+I  L+  SL ++         I 
Sbjct: 322 HITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  191 bits (487), Expect = 8e-54
 Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 28/371 (7%)

Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
              +      IN + P     L + I   L    +T+      T   L  +  L +A  K
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV----VTQEELESITKLVVAGEK 55

Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
           +  +     + L  L+ L+L  NQI  I  +  ++L  L  L +  NK+  I +  L +L
Sbjct: 56  VASIQG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA--LQNL 109

Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
           T L  L L+ + +  I    L N T +   +L  N        L N+  L  L + ++ +
Sbjct: 110 TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
            ++  ++  +L  L  L L  N I +IS      L+ L       N+I  +      N +
Sbjct: 168 KDVTPIA--NLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISEL 594
            L ++++  N +TD+  L   L  L WL I  N +   +       L+ L++  NQIS++
Sbjct: 222 RLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI 280

Query: 595 GNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNL 652
                + +  +L     ++N+L       I    ++  LFL+ N I+ ++P        +
Sbjct: 281 SV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 653 TRVDLVGNRLK 663
              D     +K
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  167 bits (426), Expect = 1e-45
 Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 42/356 (11%)

Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN-TDWSTMS-------LDISHNVF 162
           L +     ++   + ++   +   L  +  L +          +        L+++ N  
Sbjct: 21  LAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 163 TD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTA 217
           TD      L  L +L +  N I  +       L +L  L L ++ +S+++  +       
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLT---- 132

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
                +  L+L  N   S      S ++ L  L +  + +  +    +  L  L  L+L+
Sbjct: 133 ----KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLN 185

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
            N + +I P        L       N I  + P     +T+L  L + NN++T    + +
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT----DLS 237

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
             + L +L  L I  N+++ +++   KDL +L++L++ +NQI  I  +   +LS L++L 
Sbjct: 238 PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293

Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
           ++NN+L   +   +  LT L+ L L  N +  I    L + + +         + +
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 38/312 (12%)

Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR----THNTDWSTMS----LDIS 158
             + L +L+ L++   +I ++S      L KL  L +     T  +    ++    L ++
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118

Query: 159 HNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN 213
            +  +D      L  + SL+L  N   +    +   +  L+YL +T++K+ +V   +   
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTPIANL- 176

Query: 214 YDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV 273
                   +L  L L+ N  + +     + L+ L       N +T +    +  +  L  
Sbjct: 177 -------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNS 225

Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEW 333
           L +  N + ++ P        L  + +  N I+ +       LT+L +L++ +N+++   
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS--- 278

Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL 393
            + +  + L +L  L +  N++   D  +   L  L  L L  N I  I     ASLS +
Sbjct: 279 -DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKM 335

Query: 394 HTLIMSNNKLKR 405
            +   +N  +K+
Sbjct: 336 DSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 5e-21
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 31/215 (14%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------L 155
                 +  L  L+V   K+ +++      L  L +L+L  +N   D S ++        
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN-YNQIEDISPLASLTSLHYF 204

Query: 156 DISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
               N  TD      +  L SL +  N I  L       L  L++L +  N++S++    
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK 262

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
                       L++L++ +N    +     + LS+L  L+L  N L       + GL +
Sbjct: 263 DLT--------KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
           LT L LS N++ +I P        +      N  I
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 34/202 (16%), Positives = 77/202 (38%), Gaps = 33/202 (16%)

Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
             TL      I +I   +   L +     L + +++++     E+L  +T L +A  K+ 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQW 583
            ++    +  +NL  + L+GN +TDI  L   L  L  L I  N +          +L+ 
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDISALQNLTNLRE 114

Query: 584 LDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQP 643
           L ++ + IS++     + +  ++   +  +N             + N+            
Sbjct: 115 LYLNEDNISDISP---LANLTKMYSLNLGANHNLS-----DLSPLSNM------------ 154

Query: 644 YTFFMKPNLTRVDLVGNRLKNI 665
                   L  + +  +++K++
Sbjct: 155 ------TGLNYLTVTESKVKDV 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 1e-11
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L +  N+I  +  ++     KL++L + S+ +  I     N L +L  L L++N+L  
Sbjct: 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGN 301

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
                   L NL  L+L  N I  I      SL+ +      +  I 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +  N+I            +L  L + ++ +  I       L +L +L +  N++++
Sbjct: 224 NSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I       L  L  L+L  N++          LT+L  L L  N IT        S++ S
Sbjct: 280 IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337

Query: 926 ITLTSNP 932
               +  
Sbjct: 338 ADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +  +++             L  L LN + +E I       L  L       N++T+
Sbjct: 158 NYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I       +  L  L +  NKI  +S     +L+ L  L++  N+I+        ++++ 
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKM 269

Query: 926 ITLTSN 931
           + + SN
Sbjct: 270 LNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L      I  +   +     +     L  + V  +   T   L+ +  L +   ++  
Sbjct: 3   ATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS 58

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I+G   E L NL  L L  N+I  IS     +L  L  L +  N+IT  +     + ++ 
Sbjct: 59  IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRE 114

Query: 926 ITLTSN 931
           + L  +
Sbjct: 115 LYLNED 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 6e-09
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T LY+  N+I  + +        L+ L+LN  ++  I       L ++  L L  N    
Sbjct: 91  TNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF-AVWHLSSQIQ 924
                   +  L  L +  +K+  ++     +LT L  L L++N+I     +  L + + 
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASL-TSLH 202

Query: 925 SITLTSN 931
             T   N
Sbjct: 203 YFTAYVN 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  207 bits (528), Expect = 1e-55
 Identities = 135/622 (21%), Positives = 220/622 (35%), Gaps = 98/622 (15%)

Query: 87  VRLRIECGDMLFFQSSLSP--GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR 144
             + +    +    S++S    S   L  L  LS       +   GS  G +   +LT  
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESL-FLS------NSHINGSVSGFKCSASLT-- 103

Query: 145 THNTDWSTMSLDISHNVFTDE---------LQSLESLDLSMNSI-WTLPDAIFCPLQSLS 194
                    SLD+S N  +              L+ L++S N++ +    +    L SL 
Sbjct: 104 ---------SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 195 YLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQ 253
            L+L+ N +S      +   D       L+ L +S N     +     SR   L+ L + 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDVD---VSRCVNLEFLDVS 208

Query: 254 GNILT----FLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVL 308
            N  +    FL D      ++L  L++S N L  +    +   +  LK + + +N     
Sbjct: 209 SNNFSTGIPFLGD-----CSALQHLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVGP 262

Query: 309 APGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLY 367
            P     L  L  L L+ N+ T E +          L  L+++ N     +         
Sbjct: 263 IPP-LP-LKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CS 318

Query: 368 RLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA-LSVLSLDNN 425
            L+ L L +N     +  +T   +  L  L +S N+       SL +L+A L  L L +N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 426 ELE-YIEENALKNS-TSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-EINNLS 481
                I  N  +N   +LQ+ +L  N  T +IP  L N   L +L L  N ++  I + S
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-S 437

Query: 482 LNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQKVEAGT----FDNNSNL 536
           L SL +L  L+L  N +   I + +   +  L  L L  N +     G       N +NL
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLT----GEIPSGLSNCTNL 492

Query: 537 VAIRLDGNYLTDIGGLFP----KLPNLVWLNISENLLEWFDYALIPAD------LQWLDI 586
             I L  N LT   G  P    +L NL  L +S N         IPA+      L WLD+
Sbjct: 493 NWISLSNNRLT---GEIPKWIGRLENLAILKLSNNSF----SGNIPAELGDCRSLIWLDL 545

Query: 587 HGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV 641
           + N  +      +        Q      +  + K      N       +          +
Sbjct: 546 NTNLFNGTIPAAMFK------QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 642 QPYTFFMKPNLTRVDLVGNRLK 663
           +             ++      
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  195 bits (499), Expect = 6e-52
 Identities = 137/560 (24%), Positives = 216/560 (38%), Gaps = 96/560 (17%)

Query: 154 SLDISHNVFTDE--------LQSLESLDLSMNSI-WTLPDAIFCP--LQSLSYLNLTQNK 202
            L++S N             L SLE LDLS NSI                L +L ++ NK
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILT--- 258
           +S       S        +NL  LD+S+N+F   +P       S LQ L + GN L+   
Sbjct: 190 ISG--DVDVSRC------VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDF 239

Query: 259 -------------FLADHALDG------LNSLTVLNLSVNNLV-NIPPELFNQSRDLKEV 298
                         ++ +   G      L SL  L+L+ N     IP  L      L  +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 299 YLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN- 356
            L  N     + P   +  + L  L LS+N  + E +   T   +  L VL++++N+ + 
Sbjct: 300 DLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 357 KLDSSIFKDLYRLQVLHLENNQIE-SIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSL 414
           +L  S+      L  L L +N     I  N      + L  L + NN        +L + 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 415 TALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
           + L  L L  N L   I  + L + + L+D  L  N L  EIP+ L  + +L+TL L  N
Sbjct: 418 SELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 473 LIT-EINNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQKVEAGTF 530
            +T EI +  L++   L  + L+ N ++  I K    +L  L IL L++N          
Sbjct: 477 DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS--------- 525

Query: 531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADL--QWLDIHG 588
                       GN   ++G       +L+WL+++ NL        IPA +  Q   I  
Sbjct: 526 ----------FSGNIPAELG----DCRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAA 567

Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL------FLTNNLISKVQ 642
           N I+    Y  I++         + N L E  G      +  L       +T+ +     
Sbjct: 568 NFIAGK-RYVYIKNDGMKKECHGAGNLL-EFQGI-RSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 643 PYTFFMKPNLTRVDLVGNRL 662
             TF    ++  +D+  N L
Sbjct: 625 SPTFDNNGSMMFLDMSYNML 644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (476), Expect = 4e-49
 Identities = 122/501 (24%), Positives = 201/501 (40%), Gaps = 71/501 (14%)

Query: 154 SLDISHNVFTDE-----LQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
            L+IS N F        L+SL+ L L+ N     +PD +     +L+ L+L+ N      
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 208 TFSFSNYDTARCGINLRVLDLSNNSF-DSLPAEGFSRLSRLQELYLQGNILT-FLADHAL 265
              F +         L  L LS+N+F   LP +   ++  L+ L L  N  +  L +   
Sbjct: 311 PPFFGS------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 266 DGLNSLTVLNLSVNNLV-NIPPELFN-QSRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVL 322
           +   SL  L+LS NN    I P L       L+E+YLQNN     + P + N  ++L+ L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSL 423

Query: 323 DLSNNELT----EEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENN 377
            LS N L+        +      L +L  L +  N +  ++   +   +  L+ L L+ N
Sbjct: 424 HLSFNYLSGTIPSSLGS------LSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFN 476

Query: 378 QIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENAL 435
            +   I     ++ +NL+ + +SNN+L       +  L  L++L L NN     I    L
Sbjct: 477 DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-L 534

Query: 436 KNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLT 494
            +  SL    LN N     IP  +       +  +  N I     + + +          
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 495 ENNIS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT---- 547
            N +      S+ +  +LS     N+ S       + TFDNN +++ + +  N L+    
Sbjct: 591 GNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 548 -DIGGLFPKLPNLVWLNISENLLEWFDYALIPA------DLQWLDIHGNQISELGNYFEI 600
            +IG     +P L  LN+  N +       IP        L  LD+  N++   G    I
Sbjct: 650 KEIG----SMPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLSSNKLD--G---RI 696

Query: 601 ESQL----RLTYFDASSNKLT 617
              +     LT  D S+N L+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (425), Expect = 1e-42
 Identities = 111/478 (23%), Positives = 177/478 (37%), Gaps = 63/478 (13%)

Query: 222 NLRVLDLSNNSFDSLPAE---GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
            +  +DLS+   +   +        L+ L+ L+L  + +   +        SLT L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSR 109

Query: 279 NNLV-NIPP--ELFNQSRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELT-EEW 333
           N+L   +     L + S  LK + + +N+++          L  L VLDLS N ++    
Sbjct: 110 NSLSGPVTTLTSLGSCSG-LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSI-FKDLYRLQVLHLENNQIE-SIHRNTFASLS 391
           V      G   L  L I+    NK+   +       L+ L + +N     I        S
Sbjct: 169 VGWVLSDGCGELKHLAISG---NKISGDVDVSRCVNLEFLDVSSNNFSTGI--PFLGDCS 223

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGNK 450
            L  L +S NKL    S ++ + T L +L++ +N+    I         SLQ   L  NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280

Query: 451 LT-EIPKVLR-NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVFE 507
            T EIP  L     +L  LDL  N           S   L  L L+ NN S  +      
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 508 KLSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGNYLT-----DIGGLFPKLPNLVW 561
           K+  L +L+L+ N+   ++     + +++L+ + L  N  +     ++         L  
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQE 398

Query: 562 LNISENLLEWFDYALIPAD------LQWLDIHGNQIS-----ELGNYFEIESQLRLTYFD 610
           L +  N         IP        L  L +  N +S      LG+        +L    
Sbjct: 399 LYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------SKLRDLK 448

Query: 611 ASSNKLTELTGNAIPHSV------ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
              N    L G  IP  +      E L L  N ++   P       NL  + L  NRL
Sbjct: 449 LWLNM---LEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (409), Expect = 9e-41
 Identities = 99/431 (22%), Positives = 157/431 (36%), Gaps = 63/431 (14%)

Query: 269 NSLTVLNLSVNNLVN----IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
           + +T ++LS   L      +   L + +  L+ ++L N+ IN    G       L  LDL
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSGFKC-SASLTSLDL 107

Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQIES-- 381
           S N L+       +      L  LN++ N ++     S    L  L+VL L  N I    
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 382 -IHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELE-YIEENALKNS 438
            +          L  L +S NK+   +    +     L  L + +N     I    L + 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGI--PFLGDC 222

Query: 439 TSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           ++LQ   ++GNKL+ +  + +     LK L++  N       +    L  L  L L EN 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENK 280

Query: 498 IS-NISKGVFEKLSVLTILNLASNKIQKVEAGT----FDNNSNLVAIRLDGNYLTDIGGL 552
            +  I   +      LT L+L+ N       G     F + S L ++ L  N  +   G 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFY----GAVPPFFGSCSLLESLALSSNNFS---GE 333

Query: 553 FP-----KLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQIS-----ELGNY 597
            P     K+  L  L++S N       E      + A L  LD+  N  S      L   
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 598 FEIESQLRLTYFDASSNKLTELTGNAIPHSVEN------LFLTNNLISKVQPYTFFMKPN 651
                +  L      +N     TG  IP ++ N      L L+ N +S   P +      
Sbjct: 392 ----PKNTLQELYLQNNG---FTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 652 LTRVDLVGNRL 662
           L  + L  N L
Sbjct: 444 LRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (366), Expect = 2e-35
 Identities = 101/439 (23%), Positives = 165/439 (37%), Gaps = 76/439 (17%)

Query: 105 PGSFQTLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT 163
           P  F +   L+ L++      G L   +   +R LK               LD+S N F+
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK--------------VLDLSFNEFS 356

Query: 164 DEL--------QSLESLDLSMNSIW-TLPDAIF-CPLQSLSYLNLTQNKLSNVATFSFSN 213
            EL         SL +LDLS N+    +   +   P  +L  L L  N  +     + SN
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 214 YDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILT-----FLADHALDG 267
                    L  L LS N    ++P+     LS+L++L L  N+L       L       
Sbjct: 417 C------SELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY----- 464

Query: 268 LNSLTVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
           + +L  L L  N+L   IP  L N   +L  + L NN +    P     L  L +L LSN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNK-----------------MNKLDSSIFKDL--- 366
           N  +      A       L+ L++  N                   N +    +  +   
Sbjct: 524 NSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

Query: 367 YRLQVLHLENN--QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
              +  H   N  + + I       LS  +   +++       S + D+  ++  L +  
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 425 NELE-YI-EENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-EINNL 480
           N L  YI +E  + +   L   +L  N ++  IP  + +L  L  LDL  N +   I   
Sbjct: 642 NMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ- 698

Query: 481 SLNSLHQLAGLRLTENNIS 499
           ++++L  L  + L+ NN+S
Sbjct: 699 AMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 3e-20
 Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 35/282 (12%)

Query: 154 SLDISHNVFTDE-------LQSLESLDLSMNSIW-TLPDAIFCPLQSLSYLNLTQNKLSN 205
           +L +  N  T E         +L  + LS N +   +P  I   L++L+ L L+ N  S 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSG 528

Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILTFLADHA 264
                  +        +L  LDL+ N F+ ++PA  F +  ++   ++ G    ++ +  
Sbjct: 529 NIPAELGDC------RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-- 580

Query: 265 LDGLNSLTVLNLSVNNLV---NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
                     + + N L        +L   S       + +          F+    ++ 
Sbjct: 581 ---DGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI---FKDLYRLQVLHLENNQ 378
           LD+S N L+           +  L +LN+ +   N +  SI     DL  L +L L +N+
Sbjct: 637 LDMSYNMLSGYI--PKEIGSMPYLFILNLGH---NDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 379 IESIHRNTFASLSNLHTLIMSNNKLK-RI-ESNSLDSLTALS 418
           ++       ++L+ L  + +SNN L   I E    ++     
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 8e-17
 Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 42/277 (15%)

Query: 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLD 468
             D +T++ + S   N       ++L + T L+   L+ + +   +    +   SL +LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 469 LGDNLIT-EI-NNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQK- 524
           L  N ++  +    SL S   L  L ++ N +          KL+ L +L+L++N I   
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 525 --VEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPA- 579
             V     D    L  + + GN ++   G     +  NL +L++S N         IP  
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFS----TGIPFL 219

Query: 580 ----DLQWLDIHGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIP----H 626
                LQ LDI GN++S      +           L   + SSN+     G  IP     
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAIST------CTELKLLNISSNQ---FVGP-IPPLPLK 269

Query: 627 SVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRL 662
           S++ L L  N  +   P         LT +DL GN  
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 6e-05
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVE-TIHNKTFNGLKELIILRLDDNRLT 864
             L +  N+   VG    +  K LQ L L  +     I +        L  L L  N   
Sbjct: 250 KLLNISSNQF--VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 865 EIRGYEFERLENLRELYLQYNKII-YISNRTFLSLTHLKVLQLDHNRIT---SFAVWHLS 920
                 F     L  L L  N     +   T L +  LKVL L  N  +     ++ +LS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 921 SQIQSITLTSN 931
           + + ++ L+SN
Sbjct: 368 ASLLTLDLSSN 378

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (518), Expect = 3e-55
 Identities = 93/594 (15%), Positives = 196/594 (32%), Gaps = 96/594 (16%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD 164
           P +   L +L+ L++                   K ++    +     M +      F D
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFG-----PKGISANMSDEQKQKMRMHYQKT-FVD 151

Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
                +  DL  + I + P        S   L  TQ                        
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ------------------------ 187

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
            +   +N+   +      RL++L++ Y+  +        A +   +    N         
Sbjct: 188 -IGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFV-----AENICEAWENENSEYAQQYKT 240

Query: 285 PPELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
               ++  +DL +V + N   +  L   +   L ++ +++++ N           +  L 
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMSNNK 402
              V                    ++Q++++  N +++     +   +  L  L    N+
Sbjct: 300 DAPVGE------------------KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL--RN 460
           L+     +  S   L+ L+L  N++  I  N    +  +++     NKL  IP +   ++
Sbjct: 342 LEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 461 LHSLKTLDLGDNLITEINNLSLNS-------LHQLAGLRLTENNISNISKGVFEKLSVLT 513
           +  +  +D   N I  ++  + +           ++ + L+ N IS   K +F   S L+
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 514 ILNLASNKIQKVEAGT-------FDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNI 564
            +NL  N + ++   +       F N   L +I L  N LT +        LP LV +++
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 565 SENLLEWFDYALIPAD------LQWLDIHGNQISELGNYF------EIESQLRLTYFDAS 612
           S N          P        L+   I   + ++ GN         I     LT     
Sbjct: 521 SYNSFS-----KFPTQPLNSSTLKGFGIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIG 574

Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
           SN + ++    I  ++  L + +N    +               L  ++ ++I 
Sbjct: 575 SNDIRKVN-EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (516), Expect = 6e-55
 Identities = 86/554 (15%), Positives = 169/554 (30%), Gaps = 86/554 (15%)

Query: 161 VFTDELQSLESLDLSMNSIW-TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN---YDT 216
           V  +    +  L L        +PDAI   L  L  L L  +                + 
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           +        +       D  P E FS L +     +  +        +       T +  
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKD---CINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
             NN+  +   +                           LT+L    + N+    E    
Sbjct: 191 LSNNITFVSKAVMR-------------------------LTKLRQFYMGNSPFVAE---- 221

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL-ENNQIESIHRNTFASLSNLHT 395
              +        N  Y +  K +   + +L  L  + +     +  +      +L  +  
Sbjct: 222 ---NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQL 277

Query: 396 LIMSNNKLKRIESN--------SLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHL 446
           + ++ N+    E                 + ++ +  N L+    E +L+    L     
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
             N+L        +   L +L+L  N ITEI         Q+  L    N +  I     
Sbjct: 338 LYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 507 -EKLSVLTILNLASNKIQKVEAGTFD-------NNSNLVAIRLDGNYLTD-IGGLFPKLP 557
            + +SV++ ++ + N+I  V+   FD          N+ +I L  N ++     LF    
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 558 NLVWLNISENLLE---WFDYALIPAD------LQWLDIHGNQISELGNYFEIESQLRLTY 608
            L  +N+  N+L             +      L  +D+  N++++L + F   +   L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 609 FDASSNKLTELTGNAIPHSV------------ENLFLTNNLISKVQPYTFFMKPNLTRVD 656
            D S N  ++      P                      N   +  P    + P+LT++ 
Sbjct: 518 IDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 657 LVGNRLKNINQTAL 670
           +  N ++ +N+   
Sbjct: 573 IGSNDIRKVNEKIT 586

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  166 bits (423), Expect = 5e-43
 Identities = 71/476 (14%), Positives = 155/476 (32%), Gaps = 47/476 (9%)

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL-VNIP 285
           +   + + + P    +   R+  L L+G   +     A+  L  L VL L  +   VN  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT---EEWVNAATFSGL 342
                          +            +   +    DL  + +    ++     +    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
            +   +    N +  +  ++ + L +L+  ++ N+   + +        N         +
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENS-----EYAQ 236

Query: 403 LKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV---- 457
             + E    D+L  L+ + + +   L  +    LK    +Q  ++  N+     ++    
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 458 -----LRNLHSLKTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
                      ++ + +G N +       SL  + +L  L    N +       F     
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIK 354

Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNISENLL 569
           L  LNLA N+I ++ A        +  +    N L  I        +  +  ++ S N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 570 EWFDYAL---IPAD------LQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKLTEL 619
              D      +         +  +++  NQIS+     E+ S    L+  +   N LTE+
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFSTGSPLSSINLMGNMLTEI 472

Query: 620 TGNAIP---------HSVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
             N++          + + ++ L  N ++K+         P L  +DL  N     
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 2e-36
 Identities = 63/431 (14%), Positives = 139/431 (32%), Gaps = 41/431 (9%)

Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
           N  ++     P    N +  +  + L+    +   P     LT+L VL L ++       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNE 121

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-----RNTFAS 389
                 G+   +              +      R     L  + I S       + +   
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
                 +   +N +  + S ++  LT L    + N+            + + +       
Sbjct: 182 TLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE----YAQ 236

Query: 450 KLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLAGLRLTENNISNISK----- 503
           +         NL  L  +++ +   +T++    L +L ++  + +  N   +  +     
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 504 ---GVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNL 559
                      + I+ +  N ++      +      L  +    N L      F     L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 560 VWLNISENLLEWFDYALIPA------DLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
             LN++ N +      +          ++ L    N++  + N F+ +S   ++  D S 
Sbjct: 356 ASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 614 NKLTELTGNAIPH---------SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           N++  + G              +V ++ L+NN ISK     F     L+ ++L+GN L  
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 665 INQTALRISPL 675
           I + +L+    
Sbjct: 472 IPKNSLKDENE 482

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (335), Expect = 5e-32
 Identities = 65/327 (19%), Positives = 114/327 (34%), Gaps = 53/327 (16%)

Query: 104 SPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVF 162
              +F + I L  L++ + +I  + A       +++ L+   HN       L  I +   
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA-HN------KLKYIPNIFD 397

Query: 163 TDELQSLESLDLSMNSIWTLPDAIF-------CPLQSLSYLNLTQNKLSNVATFSFSNYD 215
              +  + ++D S N I ++    F           ++S +NL+ N++S      FS   
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST-- 455

Query: 216 TARCGINLRVLDLSNNSFDSLPA-------EGFSRLSRLQELYLQGNILTFL-ADHALDG 267
               G  L  ++L  N    +P        E F     L  + L+ N LT L  D     
Sbjct: 456 ----GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           L  L  ++LS N+    P +  N S  LK   ++N                    D   N
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSST-LKGFGIRNQ------------------RDAQGN 552

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
               EW      +    L  L I  N + K++  I      + VL +++N   SI  +  
Sbjct: 553 RTLREW--PEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSYV 607

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSL 414
                    ++  +K + I       +
Sbjct: 608 CPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 3e-13
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 51/217 (23%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRG----LRKLKTLTLRTHNTDWSTMSLD 156
           S      F T   L  +++    +  +   S +      +    LT           S+D
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT-----------SID 494

Query: 157 ISHNVFTD--------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
           +  N  T          L  L  +DLS NS    P        +L    +          
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQ------- 546

Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL 268
                             D   N       EG +    L +L +  N +  + +      
Sbjct: 547 -----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---T 586

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
            +++VL++  N  ++I         +     L  +  
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
             +Y+  N +      + + + KKL +L    + +E      F    +L  L L  N++T
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHLKVLQLDHNRITSFAVWHLSSQI 923
           EI        E +  L   +NK+ YI N     S++ +  +   +N I S    +     
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 924 QSITLTSN 931
            +     N
Sbjct: 427 PTPFKGIN 434

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 7e-10
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 20/145 (13%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKE-------LIILR 857
             L    N++  + +         +  +  + + + ++  K F+ L         +  + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS-------NRTFLSLTHLKVLQLDHNR 910
           L +N++++     F     L  + L  N +  I        N  F +   L  + L  N+
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 911 ITS----FAVWHLSSQIQSITLTSN 931
           +T     F    L   +  I L+ N
Sbjct: 500 LTKLSDDFRATTLPY-LVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 9e-10
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLT 864
             L L  N+I  + ++     ++++ L    + ++ I N      +  +  +    N + 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 865 EIRGYEFE-------RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
            + G  F+       +  N+  + L  N+I       F + + L  + L  N +T     
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 918 HLSSQIQSI 926
            L  + ++ 
Sbjct: 476 SLKDENENF 484

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 1e-09
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGR--------KKLQILFLNSSHVETIH-NKTFNGLKELIIL 856
             + +  NR           +        +K+QI+++  ++++T     +   +K+L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
               N+L       F     L  L L YN+I  I          ++ L   HN++     
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 917 WHLSSQIQSIT 927
              +  +  ++
Sbjct: 395 IFDAKSVSVMS 405

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 16/213 (7%)

Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
              +    +   ++      +SLNS  ++ GL L     S        +L+ L +L L S
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114

Query: 520 NKIQKVEAGTFDNN--SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW-FDYAL 576
           +  +  E         +N+   +     +          P   + ++ ++ +        
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 577 IPAD------LQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKLTELTGNAIPHSVE 629
           I            +    N I+ +        +L  L  F   ++         I  + E
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSP---FVAENICEAWE 228

Query: 630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
           N         K +   +    +LT V++     
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 13/146 (8%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETI-----HNKTFNGLKELIILRLD 859
           T + L  N++  +           L  + L+ +          ++ T  G          
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
            NR             +L +L +  N I  ++ +      ++ VL +  N   S  + ++
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYV 607

Query: 920 SSQIQSITLT---SNPWSC-DCDFTE 941
              I++               CD  +
Sbjct: 608 CPYIEAGMYMLFYDKTQDIRGCDALD 633

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  192 bits (490), Expect = 8e-55
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 8/235 (3%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF--LADHALDGLNSLTVLNLSVN 279
           +   L+L +N   SLP   F +L++L +L L  N L+F      +  G  SL  L+LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
            ++ +    F     L+ +  Q++++  +    +F  L  LI LD+S+            
Sbjct: 89  GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGI 145

Query: 339 FSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
           F+GL  L VL +A N   +     IF +L  L  L L   Q+E +    F SLS+L  L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN-STSLQDFHLNGNKL 451
           MS+N    +++     L +L VL    N +   ++  L++  +SL   +L  N  
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  187 bits (476), Expect = 6e-53
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 10/261 (3%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           +RC  +   +  ++    S+P  G    S    L L+ N L  L     D L  LT L+L
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 277 SVNNL--VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
           S N L       +    +  LK + L  N +  +    F  L QL  LD  ++ L +   
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS- 117

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQ-IESIHRNTFASLSNL 393
             + F  L  L+ L+I++       + IF  L  L+VL +  N   E+   + F  L NL
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
             L +S  +L+++   + +SL++L VL++ +N    ++    K   SLQ    + N +  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 454 IPK-VLRNL-HSLKTLDLGDN 472
             K  L++   SL  L+L  N
Sbjct: 238 SKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  187 bits (476), Expect = 6e-53
 Identities = 61/278 (21%), Positives = 123/278 (44%), Gaps = 30/278 (10%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           S T +  +   L ++P  +         + L++N +  L  G+F+ LTQL  L LS+N L
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFA 388
           + +   + +  G   L  L++++N +  + S+ F  L +L+ L  +++ ++ +   + F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLN 447
           SL NL  L +S+   +   +   + L++L VL +  N+  E    +              
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------ 171

Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFE 507
                        L +L  LDL    + +++  + NSL  L  L ++ NN  ++    ++
Sbjct: 172 -----------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 508 KLSVLTILNLASNKIQKVEAGTFDN-NSNLVAIRLDGN 544
            L+ L +L+ + N I   +     +  S+L  + L  N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  181 bits (462), Expect = 5e-51
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 10/239 (4%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           S   L+L  N + +LP  +F  L  L+ L+L+ N LS     S S++ T     +L+ LD
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT----SLKYLD 84

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH-ALDGLNSLTVLNLSVNNLVNIPP 286
           LS N   ++ +  F  L +L+ L  Q + L  +++      L +L  L++S  +      
Sbjct: 85  LSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 287 ELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
            +FN    L+ + +  NS      P IF  L  L  LDLS  +L +  ++   F+ L  L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSL 201

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL-SNLHTLIMSNNKL 403
            VLN+++N    LD+  +K L  LQVL    N I +  +       S+L  L ++ N  
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  158 bits (402), Expect = 5e-43
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 10/233 (4%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE--SNSLDSLTALSVLSLDNNE 426
              L LE+N+++S+    F  L+ L  L +S+N L      S S    T+L  L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 427 LEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNS 484
           +  +  +       L+      + L ++ +  V  +L +L  LD+         N   N 
Sbjct: 90  VITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 485 LHQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
           L  L  L++  N+   N    +F +L  LT L+L+  +++++    F++ S+L  + +  
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 544 NYLTDI-GGLFPKLPNLVWLNISENLLEWFDYAL---IPADLQWLDIHGNQIS 592
           N    +    +  L +L  L+ S N +           P+ L +L++  N  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  150 bits (382), Expect = 2e-40
 Identities = 65/356 (18%), Positives = 127/356 (35%), Gaps = 80/356 (22%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             +   +  + S+        S+   L + +NKL+ +     D LT L+ LSL +N L +
Sbjct: 10  TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 430 IE--ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL-NSLH 486
                 +   +TSL+   L+ N +  +      L  L+ LD   + + +++  S+  SL 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
            L  L ++  +      G+F  LS L +L +A N  Q+                      
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------------- 164

Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
             +  +F +L NL                       +LD+   Q+ +L            
Sbjct: 165 NFLPDIFTELRNL----------------------TFLDLSQCQLEQLSP---------- 192

Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
                + N L+ L           L +++N    +  + +    +L  +D   N +    
Sbjct: 193 ----TAFNSLSSLQ---------VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
           +  L     PS  ++    + +N F C C  Q    +    +  +  LV+++ + C
Sbjct: 240 KQEL--QHFPS--SLAFLNLTQNDFACTCEHQSFLQWI---KDQRQLLVEVERMEC 288

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  143 bits (363), Expect = 7e-38
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 19/232 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKI--GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
            SL  G F  L  L  LS+    +      + S  G   LK L L + N       +   
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFN------GVITM 93

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDA-IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTA 217
            + F   L+ LE LD   +++  + +  +F  L++L YL+++           F+     
Sbjct: 94  SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-- 150

Query: 218 RCGINLRVLDLSNNSF-DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
               +L VL ++ NSF ++   + F+ L  L  L L    L  L+  A + L+SL VLN+
Sbjct: 151 ----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIF-NVLTQLIVLDLSNN 327
           S NN  ++    +     L+ +    N I         +  + L  L+L+ N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  125 bits (315), Expect = 1e-31
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS-SHVETIHNKTFNGLKELIILRLDDNRLT 864
             L +      V  +  F G   L++L +   S  E      F  L+ L  L L   +L 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
           ++    F  L +L+ L + +N    +    +  L  L+VL    N I +     + H  S
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 922 QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
            +  + LT N ++C C+    F  +++  R  + ++ ++ C T
Sbjct: 249 SLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERMECAT 290

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 1e-23
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
           +       F +L +L  L +          G F GL  L+ L +   N+           
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-AGNSFQEN----FLP 168

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
           ++FT+ L++L  LDLS   +  L    F  L SL  LN++ N   ++ TF +   +    
Sbjct: 169 DIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN---- 223

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRL-SRLQELYLQGN 255
             +L+VLD S N   +   +      S L  L L  N
Sbjct: 224 --SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 33/177 (18%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          I C++ G    +P  IP  AT L L+ N++  +    F    +
Sbjct: 1   CPSRCSCSG------TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ 53

Query: 829 LQILFLNSSHVETI-------------------HNK------TFNGLKELIILRLDDNRL 863
           L  L L+S+ +                       N        F GL++L  L    + L
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113

Query: 864 TEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
            ++  +  F  L NL  L + +       N  F  L+ L+VL++  N      +  +
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 99  FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DI 157
           FQ +  P  F  L +L  L +  C++  LS  +F  L  L+ L +  HN      +   +
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HN------NFFSL 214

Query: 158 SHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQ-SLSYLNLTQNKLS 204
               +   L SL+ LD S+N I T           SL++LNLTQN  +
Sbjct: 215 DTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  192 bits (490), Expect = 1e-54
 Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 25/321 (7%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
             ++  ++++S     A        ++EL L GN L+ ++   L     L +LNLS N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
                        L+ + L NN +  L          +  L  +NN ++   V+ +   G
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR--VSCSRGQG 121

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSN 400
                 + +A NK+  L         R+Q L L+ N+I++++     AS   L  L +  
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
           N +  ++         L  L L +N+L ++     +++  +    L  NKL  I K LR 
Sbjct: 179 NFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
             +L+  DL  N               L         +  ++K   +KL+          
Sbjct: 236 SQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 521 KIQKVEAGTFDNNSNLVAIRL 541
            +    A   ++     A RL
Sbjct: 287 TLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  190 bits (485), Expect = 6e-54
 Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 31/329 (9%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
               +   ++ +S+     ++     ++  L+L+ N LS ++    + +        L +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLEL 62

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           L+LS+N            LS L+ L L  N +       L    S+  L+ + NN+  + 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
                     K +YL NN I +L        +++  LDL  NE+      A   +    L
Sbjct: 116 CSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTL 171

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
             LN+ YN +  +   +     +L+ L L +N++  +    F S + +  + + NNKL  
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           I   +L     L    L  N           +  +L+DF     ++  + K  ++ L   
Sbjct: 229 I-EKALRFSQNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL 493
              +     +          L      RL
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  183 bits (467), Expect = 2e-51
 Identities = 52/314 (16%), Positives = 108/314 (34%), Gaps = 17/314 (5%)

Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
               +R +   +  + L            ++  L+LS N L  I          L+ + L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
            +N +          L+ L  LDL+NN + E             +  L+ A N ++++  
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSC 116

Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS-LTALSV 419
           S  +     + ++L NN+I  +        S +  L +  N++  +    L +    L  
Sbjct: 117 SRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
           L+L  N +  ++   +     L+   L+ NKL  +    ++   +  + L +N +  I  
Sbjct: 174 LNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
            +L     L    L  N     +   F       +  +A   ++K+     +  +     
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 540 RLDGNYLTDIGGLF 553
                   D+   F
Sbjct: 290 HYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  183 bits (466), Expect = 2e-51
 Identities = 57/302 (18%), Positives = 113/302 (37%), Gaps = 17/302 (5%)

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            N   +  ++ ++L      L   + ++KE+ L  N ++ ++       T+L +L+LS+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
            L E          L  L  L++  N + +L          ++ LH  NN I  +  +  
Sbjct: 69  VLYE----TLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRG 119

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHL 446
               N++   ++NNK+  +        + +  L L  NE++ +    L  +S +L+  +L
Sbjct: 120 QGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
             N + ++         LKTLDL  N +  +      S   +  + L  N +  I K   
Sbjct: 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA-L 233

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISE 566
                L   +L  N         F + +  V   +    +  + G   +   +  L    
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 567 NL 568
             
Sbjct: 293 AY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  176 bits (449), Expect = 4e-49
 Identities = 64/314 (20%), Positives = 118/314 (37%), Gaps = 16/314 (5%)

Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
               +R  +  +  + + +  +S+ +  + ++ L L  N +  I     A  + L  L +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
           S+N L       L+SL+ L  L L+NN ++      L    S++  H   N ++ +    
Sbjct: 66  SSNVLYETL--DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS--C 116

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEKLSVLTILNL 517
                 K + L +N IT + +L      ++  L L  N I  ++   +      L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
             N I  V+       + L  + L  N L  +G  F     + W+++  N L   + AL 
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 578 P-ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH-SVENLFLTN 635
              +L+  D+ GN               R+     +   + +LTG      +V  L    
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 636 NLISKVQPYTFFMK 649
               +  P  F  +
Sbjct: 293 AYCCEDLPAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  172 bits (437), Expect = 1e-47
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 21/326 (6%)

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
             I ++  R ++  + ++ ++    +   S  N+  L +S N L +I +  L   T L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
           L+L +N L    +  L++ ++L+   LN N + E+        S++TL   +N I+ ++ 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSC 116

Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN-SNLVA 538
                      + L  N I+ +        S +  L+L  N+I  V       +   L  
Sbjct: 117 SRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 539 IRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP-ADLQWLDIHGNQISELGNY 597
           + L  N++ D+ G       L  L++S N L +        A + W+ +  N++  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK- 231

Query: 598 FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
             +     L +FD   N            ++ + F  N  +  V   T          + 
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCG-------TLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 658 VGNRLKNINQTALRISPLPSHKNIPD 683
               L +         P P    +  
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  153 bits (389), Expect = 3e-41
 Identities = 58/328 (17%), Positives = 115/328 (35%), Gaps = 49/328 (14%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
                   Q+  ++K+L +    +  +SA       KL+ L              ++S N
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL--------------NLSSN 68

Query: 161 VFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
           V  +      L +L +LDL+ N +  L         S+  L+   N +S V+        
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQG-- 121

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG-LNSLTVL 274
                   + + L+NN    L        SR+Q L L+ N +  +    L    ++L  L
Sbjct: 122 -------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
           NL  N + ++  ++      LK + L +N +  + P   +    +  + L NN+L     
Sbjct: 175 NLQYNFIYDVKGQVVFAK--LKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKLVLI-- 229

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH 394
                     L   ++  N  +            L+    +N +++++ + T   L+  +
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSL 422
               +   L    +   + L A     L
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 28/156 (17%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L+   N I  V      G    + ++L ++ +  + +        +  L L  N +  
Sbjct: 102 ETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHL--------------------KV 903
           +         + L  L LQYN I  +  +     L  L                      
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 904 LQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDC 937
           + L +N++     A+    + ++   L  N + C  
Sbjct: 219 ISLRNNKLVLIEKALRFSQN-LEHFDLRGNGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 8e-15
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
               +  + +    +        ++ L L+ + +  I         +L +L L  N L E
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
               + E L  LR L L  N +  +          ++ L   +N I+  
Sbjct: 73  TL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRV 114

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            EL L GN +  + +       KL++L L+S+ +    +     L  L  L L++N + E
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94

Query: 866 ----------------IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
                           I      R +  + +YL  NKI  + +      + ++ L L  N
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 910 RITSF---AVWHLSSQIQSITLTSN 931
            I +     +   S  ++ + L  N
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            + +I  +  S ++            +  L L  N L++I   +      L  L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
           +    +    SL+ L+ L L++N +    V      I+++   +N
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 18/85 (21%), Positives = 34/85 (40%)

Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906
                   I ++ D+ L +      +   N++EL L  N +  IS       T L++L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
             N +         S ++++ L +N
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N I  V         KL+ L L+S+ +  +    F     +  + L +N+L  
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           I        +NL    L+ N     + R F    + +V  +    +  
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK 274

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  199 bits (508), Expect = 2e-54
 Identities = 102/524 (19%), Positives = 179/524 (34%), Gaps = 55/524 (10%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
             + L LS NS   L     S LS L+ L L  N +  L  H       L  L++S N L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
            NI          L+ + L  N  +VL     F  LT+L  L LS  +  +  ++    +
Sbjct: 113 QNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVA 167

Query: 341 GLH-RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
            LH   ++L++    +   ++   +      VLHL  +           S++ L  L +S
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 400 NNKLKRIESNSLDS----------LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           N KL       L +          L  +++  ++      ++         ++  ++   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 450 KLTEIPK------VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
            +TE             L SL    + + +         +   ++    L+ ++   I  
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
                 S  T LN   N               L  + L  N L +   +     N+    
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM---- 402

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
                          + L+ LD+  N ++             +   + SSN LT      
Sbjct: 403 ---------------SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
           +P  V+ L L NN I  + P        L  +++  N+LK++         L S + I  
Sbjct: 448 LPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVF--DRLTSLQYI-- 502

Query: 684 FYIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
            ++ +NP+ C C       +W+  +S    RN    V  D+  C
Sbjct: 503 -WLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  173 bits (440), Expect = 8e-46
 Identities = 89/466 (19%), Positives = 170/466 (36%), Gaps = 60/466 (12%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
            T +L +S N  +         L  L  L LS N I +L   +F   Q L YL+++ N+L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP-AEGFSRLSRLQELYLQGNILTFLAD 262
            N++    ++         LR LDLS N FD LP  + F  L++L  L L       L  
Sbjct: 113 QNISCCPMAS---------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 263 HALDGLNSLTV-LNLSVNNLVNIPPELFN--QSRDLKEVYLQNNSINVLAPGIFNVLTQL 319
             +  L+   + L+L   ++     E      +  L  V+  N+  +V      N L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD-------------- 365
            + ++  N+   + +            +LN+    +        K               
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 366 --------------------LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
                               L  L + H++N          ++  + ++  ++S +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK 465
           I      S ++ + L+   N               LQ   L  N L    KV     ++ 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN--ISKGVFEKLSV-LTILNLASNKI 522
           +L+  D  +  +N+ + +     A   +   N+S+  ++  VF  L   + +L+L +N+I
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462

Query: 523 QKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
             +      +   L  + +  N L  +  G+F +L +L ++ + +N
Sbjct: 463 MSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  166 bits (421), Expect = 2e-43
 Identities = 86/477 (18%), Positives = 165/477 (34%), Gaps = 64/477 (13%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
             K LS+    I  L       L +L+                                L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRV-------------------------------L 81

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
            LS N I +L   +F   Q L YL+++ N+L N++    +         +LR LDLS N 
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---------SLRHLDLSFND 132

Query: 233 FDSLP-AEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV-LNLSVNNLVNIPPELFN 290
           FD LP  + F  L++L  L L       L    +  L+   + L+L   ++     E   
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 291 --QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
              +  L  V+  N+  +V      N L  L + ++  N+   + +            +L
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH----------RNTFASLSNLHTLIM 398
           N+    +        K         +E   I ++             +  +L +L    +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KV 457
            N      +         +++  L  ++  +I      + +S    +   N  T+   + 
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL----SVLT 513
              L  L+TL L  N +     ++L     ++ L   + ++++++   +++       + 
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVAL-MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 514 ILNLASNKIQKVEAGTFDN-NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
           +LNL+SN +       F      +  + L  N +  I      L  L  LN++ N L
Sbjct: 432 VLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  131 bits (331), Expect = 7e-32
 Identities = 56/387 (14%), Positives = 120/387 (31%), Gaps = 41/387 (10%)

Query: 70  NSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKD--LSVEFCKIGNL 127
            ++    +   +   +   + ++          +  G  ++L       L + F      
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVS-----YHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 128 SAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF 187
           S      +  L  L L   N   +  +        ++  +    L++++  I T      
Sbjct: 210 SVQVNMSVNALGHLQLS--NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
              Q      +    + N                    L ++            + L  L
Sbjct: 268 KLFQFFWPRPVEYLNIYN--------------------LTITERIDREEFTYSETALKSL 307

Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
              +++  +  F  +        + +  LS+++   I             +    N    
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367
                 + L +L  L L  N L   +  A     +  L  L+     +N L+S  +    
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD---VSLNSLNSHAYDRTC 424

Query: 368 R----LQVLHLENNQIESIHRNTFASL-SNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
                + VL+L +N    +  + F  L   +  L + NN++  I    +  L AL  L++
Sbjct: 425 AWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNV 480

Query: 423 DNNELEYIEENALKNSTSLQDFHLNGN 449
            +N+L+ + +      TSLQ   L+ N
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  122 bits (308), Expect = 6e-29
 Identities = 95/549 (17%), Positives = 172/549 (31%), Gaps = 86/549 (15%)

Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
             +   LT +PK L      K L L  N I+E+    ++ L +L  LRL+ N I ++   
Sbjct: 37  DYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94

Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWL 562
           VF     L  L+++ N++Q +   +    ++L  + L  N    +     F  L  L +L
Sbjct: 95  VFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 563 NISENLLEWFD---YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL 619
            +S       D    A +      LD+    I              + +     N L  +
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 620 TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
             N   +++ +L L+N  ++           +          +   +        +   +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 680 NIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAH 739
                 +       +  +          +R +    +    +  + + +    +  KEA 
Sbjct: 272 FFWPRPVEYLNIY-NLTITERI------DREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 740 SNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPP 799
            + F    E N   L                ++    H V                   P
Sbjct: 325 YSVFA---EMNIKMLSI--------------SDTPFIHMV------------------CP 349

Query: 800 RIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLD 859
             P   T L    N             K+LQ L L  + ++    K     K +  L   
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETL 408

Query: 860 DNRLTEIRGYEFERL----ENLRELYLQYNKIIYISNRTFLSLT-HLKVLQLDHNRITSF 914
           D  L  +  + ++R     E++  L L  N    ++   F  L   +KVL L +NRI S 
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSI 465

Query: 915 --AVWHLSS-----------------------QIQSITLTSNPWSCDCDFTEKFRDYLQR 949
              V HL +                        +Q I L  NPW C C       +++ +
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525

Query: 950 SRSSVHDIS 958
               V + +
Sbjct: 526 HSGVVRNSA 534

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 3e-14
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
           +++D S       +P  +P     L L  N I  +         +L++L L+ + + ++ 
Sbjct: 34  SMVDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92

Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI-SNRTFLSLTHLK 902
              F   ++L  L +  NRL  I       + +LR L L +N    +   + F +LT L 
Sbjct: 93  FHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149

Query: 903 VLQLDHNRITSFAVWHLSSQIQSITLTSN 931
            L L   +     +  ++    S  L   
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score =  187 bits (475), Expect = 2e-54
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 16/177 (9%)

Query: 1057 MRVWFHSRFGVRLFY-------KSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILEN 1109
            M    H   GV L           +  E   R+  F AF+SYS  D  +V  EL P LE 
Sbjct: 1    MHHHHHHSSGVDLGTENLYFQSMKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEK 60

Query: 1110 GDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVL 1169
             D +  +CL+   F  G  I + IV  +E S ++I VLS NF+++EWC YEF  AHH + 
Sbjct: 61   EDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLF 120

Query: 1170 -RGKKRLIVILLGEVPQKDL---DPDIRLYLKSNTYLQWGDK-----LFWEKLKFAL 1217
                  +I+ILL  +P   +      ++  L+   YL+W        LFW  L+ A+
Sbjct: 121  HENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDRRKCGLFWANLRAAI 177

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  192 bits (491), Expect = 4e-53
 Identities = 88/468 (18%), Positives = 166/468 (35%), Gaps = 48/468 (10%)

Query: 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDL 228
             S   +   +          L +L+ L+   + ++++                L  L  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--------GLTKLIC 71

Query: 229 SNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPEL 288
           ++N+  +L     S+ + L  L    N LT L    +  L  LT LN   N L  +    
Sbjct: 72  TSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--- 122

Query: 289 FNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
            +Q+  L  +    N++  +     +  TQL  LD   N+   +       +   +L  L
Sbjct: 123 VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL----DVTPQTQLTTL 175

Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408
           + ++NK+ +LD         L  L+ + N I  +          L  L  S+NKL  I+ 
Sbjct: 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID- 228

Query: 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
             +  LT L+      N L  ++ + L     L   H     L EI   L +   L    
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEID--LTHNTQLIYFQ 281

Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG 528
                  +I  L +    QL  L      I+ +      +   L  L L + ++ +++  
Sbjct: 282 AEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD-- 334

Query: 529 TFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHG 588
              +N+ L ++     ++ D   +  K+P L     +E          +  +   + +  
Sbjct: 335 -VSHNTKLKSLSCVNAHIQDFSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
           + + + GN   IE      Y D ++N +T    +    +V   F + N
Sbjct: 393 DLLDQFGNPMNIEPGDGGVY-DQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  148 bits (376), Expect = 3e-38
 Identities = 81/423 (19%), Positives = 143/423 (33%), Gaps = 71/423 (16%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            +    S + L  L  L      I +++      L  L  L   ++N      +LD+S  
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT----TLDLSQ- 83

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
                  +L  L    N +  L      PL  L+YLN   NKL+ +              
Sbjct: 84  -----NTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPL------- 128

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
             L  L+ + N+   +     S  ++L EL    N      D  +     LT L+ S N 
Sbjct: 129 --LTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
           +  +     +Q++ L  +    N+I  L     N   QL  LD S+N+LTE        +
Sbjct: 182 ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-----IDVT 230

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI------------------ 382
            L +L   + + N + +LD S    L     LH     +  I                  
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKL---TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 383 -HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
                    + L+ L      +  ++   L     L  L L+N EL  ++   + ++T L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKL 341

Query: 442 QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI--NNLSLNSLHQLAGLRLTENNIS 499
           +        + +    +  + +L      +     +    L+ NSL       L +   +
Sbjct: 342 KSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400

Query: 500 NIS 502
            ++
Sbjct: 401 PMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  146 bits (371), Expect = 2e-37
 Identities = 75/391 (19%), Positives = 139/391 (35%), Gaps = 39/391 (9%)

Query: 279 NNLVNIPPELFNQS---RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN 335
           N L     + FN      +          +          L  L  LD  N+ +T    +
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----D 56

Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
                 L  L  L    N +  LD         L  L  ++N++ ++       L+ L  
Sbjct: 57  MTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTY 110

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
           L    NKL ++    +     L+ L+   N L  I+   + ++T L +   + NK     
Sbjct: 111 LNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL 164

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
             +     L TLD   N ITE++      L++L       NNI+ +      +   LT L
Sbjct: 165 D-VTPQTQLTTLDCSFNKITELDVSQNKLLNRL---NCDTNNITKLD---LNQNIQLTFL 217

Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA 575
           + +SNK+ +++       + L       N LT++      L  L  L+  +  L   D  
Sbjct: 218 DCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID-L 271

Query: 576 LIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTN 635
                L +    G +  +  +   +    +L   D  +  +TEL  +  P  +  L+L N
Sbjct: 272 THNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITELDLSQNP-KLVYLYLNN 327

Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
             ++++          L  +  V   +++ +
Sbjct: 328 TELTELDVSHN---TKLKSLSCVNAHIQDFS 355

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 30/136 (22%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L  D N++    +       KL  L  +++ +  +     +    L  L    N LTE
Sbjct: 88  TYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTE 141

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---- 921
           I   +      L EL    NK I   +      T L  L    N+IT   V         
Sbjct: 142 I---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196

Query: 922 -----QIQSITLTSNP 932
                 I  + L  N 
Sbjct: 197 NCDTNNITKLDLNQNI 212

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L    N +  +         +L  L  + +    I         +L  L    N++TE
Sbjct: 130 TYLNCARNTLTEIDVSHN---TQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE 184

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +   +  + + L  L    N I  +          L  L    N++T   V  L+  +  
Sbjct: 185 L---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTY 237

Query: 926 ITLTSNP 932
              + NP
Sbjct: 238 FDCSVNP 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L    N+I  +        K L  L  +++++  +     N   +L  L    N+LTE
Sbjct: 173 TTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---- 921
           I   +   L  L       N +  +      +L+ L  L      +    + H +     
Sbjct: 227 I---DVTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

Query: 922 ------QIQSITLTSNP 932
                 +I+ + +T N 
Sbjct: 281 QAEGCRKIKELDVTHNT 297

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T L+     +              Q+++  +     I         +L +L      +TE
Sbjct: 257 TTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE 311

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +   +  +   L  LYL   ++  +        T LK L   +  I  F+       + +
Sbjct: 312 L---DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 926 ITLTSN 931
                 
Sbjct: 366 NFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
                        +TI   +   L  L  L   ++ +T++ G   E+L  L +L    N 
Sbjct: 21  ASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---------QIQSITLTSNP 932
           I  +        T+L  L  D N++T+  V  L+          ++  + ++ NP
Sbjct: 76  ITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP 127

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 12/129 (9%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T      N +  +   +     KL  L    + +  I       L              +
Sbjct: 236 TYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYF-----QAEGCRK 287

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I+  +      L  L  Q   I  +          L  L L++  +T   V H +  ++S
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHNTK-LKS 343

Query: 926 ITLTSNPWS 934
           ++  +    
Sbjct: 344 LSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 8/131 (6%)

Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
           +Y        +         +L +L   ++ +  +     +   +L+ L L++  LTE+ 
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL- 333

Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSIT 927
             +      L+ L      I   S+     +  L        +  +     L++   +I 
Sbjct: 334 --DVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

Query: 928 LTSNPWSCDCD 938
           ++ +      +
Sbjct: 390 VSPDLLDQFGN 400

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  188 bits (480), Expect = 7e-53
 Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 13/282 (4%)

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
           +   S+ S +S+P+     +   + L L  N +T++++  L    +L  L L+ N +  I
Sbjct: 35  ICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
             + F+    L+ + L  N ++ L+   F  L+ L  L+L  N         + FS L +
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTK 150

Query: 345 LVVLNIAYN-KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
           L +L +       K+    F  L  L+ L ++ + ++S    +  S+ N+  LI+   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 404 KRIESNSLDSLTALSVLSLDNNELEY--------IEENALKNSTSLQDFHLNGNKLTEIP 455
             +    +D  +++  L L + +L+          E N+L    + ++  +    L ++ 
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           K+L  +  L  L+   N +  + +   + L  L  + L  N 
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  173 bits (441), Expect = 1e-47
 Identities = 55/292 (18%), Positives = 119/292 (40%), Gaps = 22/292 (7%)

Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
               S  S+ ++P  +    +++  L+L+ N+++ ++             +NL+ L L++
Sbjct: 35  ICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRC------VNLQALVLTS 85

Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE-LF 289
           N  +++  + FS L  L+ L L  N L+ L+      L+SLT LNL  N    +    LF
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 290 NQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
           +    L+ + + N  +   +    F  LT L  L++  ++L        +   +  +  L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHL 203

Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN--------TFASLSNLHTLIMSN 400
            +   +   L          ++ L L +  +++ H +        +         + +++
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
             L ++    L+ ++ L  L    N+L+ + +      TSLQ   L+ N   
Sbjct: 264 ESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  171 bits (435), Expect = 5e-47
 Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 20/267 (7%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           +  SLD+S+N  T           +L++L L+ N I T+ +  F  L SL +L+L+ N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNI-LTFLA 261
           SN+++  F          +L  L+L  N + +L     FS L++LQ L +      T + 
Sbjct: 113 SNLSSSWFKPL------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 262 DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
                GL  L  L +  ++L +  P+     +++  + L      +L     +V + +  
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 322 LDLSNNELTEEWVNAAT---FSGLHRLVVLNIAYNKMNKLDS--SIFKDLYRLQVLHLEN 376
           L+L + +L     +  +    + L +             L     +   +  L  L    
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKL 403
           NQ++S+    F  L++L  + +  N  
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  165 bits (420), Expect = 6e-45
 Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 60/332 (18%)

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            +   +   S  +L +IP  L      +K + L NN I  ++         L  L L++N
Sbjct: 30  CDRNGICKGSSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI-HRNT 386
            +    +   +FS L  L  L+++YN ++ L SS FK L  L  L+L  N  +++   + 
Sbjct: 87  GINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 387 FASLSNLHTLIMSNN-KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
           F+ L+ L  L + N     +I+      LT L  L +D ++L+  E  +LK+  ++    
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 446 LNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
           L+  +   + +  +    S++ L+L D                     L   + S +S G
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDT-------------------DLDTFHFSELSTG 245

Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNI 564
               L                             +++    L  +  L  ++  L+ L  
Sbjct: 246 ETNSLIKKFTFRN---------------------VKITDESLFQVMKLLNQISGLLELEF 284

Query: 565 SENLLEWFDYALIPAD-------LQWLDIHGN 589
           S N L+      +P         LQ + +H N
Sbjct: 285 SRNQLK-----SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  165 bits (419), Expect = 9e-45
 Identities = 64/350 (18%), Positives = 125/350 (35%), Gaps = 74/350 (21%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           ++ L L NN+I  I  +      NL  L++++N +  IE +S  SL +L  L L  N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
            +  +  K  +SL   +L GN    + +  +  +L  L+ L +G+               
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM-------------- 159

Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
                    +  + I +  F  L+ L  L + ++ +Q  E  +  +  N+  + L     
Sbjct: 160 ---------DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 547 TDI-GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
             +         ++  L                 +L+  D+     SEL           
Sbjct: 211 ILLLEIFVDVTSSVECL-----------------ELRDTDLDTFHFSEL----------- 242

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
                  +N L +        +  N+ +T+  + +V          L  ++   N+LK++
Sbjct: 243 ---STGETNSLIKKF------TFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSV 292

Query: 666 NQTALRISPLPSHKNIPDFYIGENPFQCDCNM-----QWLQSYSVNKERN 710
                    L S + I   ++  NP+ C C       +WL   S  ++ +
Sbjct: 293 PDGIF--DRLTSLQKI---WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 337

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  130 bits (329), Expect = 7e-33
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 22/236 (9%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           +++   SF +L  L+ L + +  + NLS+  F+ L  L  L L      + T    +   
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL--LGNPYKT----LGET 142

Query: 161 VFTDELQSLESLDLSMN-SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
                L  L+ L +    +   +    F  L  L  L +  + L +    S  +      
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ---- 198

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF--------LADHALDGLNSL 271
             N+  L L       L        S ++ L L+   L             ++L    + 
Sbjct: 199 --NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
             + ++  +L  +   L   S  L E+    N +  +  GIF+ LT L  + L  N
Sbjct: 257 RNVKITDESLFQVMKLLNQISG-LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (256), Expect = 2e-23
 Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 40/199 (20%)

Query: 762 ACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSH 821
           +    ++C  N  C             S+G  ++ +P  +      L L  NRI  + + 
Sbjct: 23  SNQASLSCDRNGIC-----------KGSSGSLNS-IPSGLTEAVKSLDLSNNRITYISNS 70

Query: 822 SFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY 881
                  LQ L L S+ + TI   +F+ L  L  L L  N L+ +    F+ L +L  L 
Sbjct: 71  DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130

Query: 882 LQYNKII--------------------------YISNRTFLSLTHLKVLQLDHNRITSFA 915
           L  N                              I  + F  LT L+ L++D + + S+ 
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 916 --VWHLSSQIQSITLTSNP 932
                    +  + L    
Sbjct: 191 PKSLKSIQNVSHLILHMKQ 209

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.9 bits (231), Expect = 4e-20
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 34/183 (18%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           + +    F  L  L++L ++   + +    S + ++ +                      
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH-------------------- 202

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN--YDTAR 218
                      L L M     L +       S+  L L    L        S    ++  
Sbjct: 203 -----------LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
                R + +++ S   +  +  +++S L EL    N L  + D   D L SL  + L  
Sbjct: 252 KKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 279 NNL 281
           N  
Sbjct: 311 NPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 37/188 (19%)

Query: 809 YLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRG 868
             + +    +    F G   L+ L +++S +++   K+   ++ +  L L   +   +  
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 869 YEFERLENLRELYLQYNKIIY-----ISNRTFLSL------------------------- 898
              +   ++  L L+   +       +S     SL                         
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

Query: 899 -THLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV 954
            + L  L+   N++ S        L+S +Q I L +NPW C C   +    +L ++    
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334

Query: 955 HDISQIRC 962
                 +C
Sbjct: 335 QG--SAKC 340

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score =  178 bits (454), Expect = 6e-52
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 1071 YKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIG 1130
              + +  +    + FDAF+ Y   D  FV +E+   LE  +   KLC+  R+   G  + 
Sbjct: 3    ITTLDDPLGHMPERFDAFICYCPSDIQFV-QEMIRQLEQTNYRLKLCVSDRDVLPGTCVW 61

Query: 1131 DTIVQAVES-SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKK-RLIVILLGEVPQKDL 1188
                + +E   RR ++V+S+++++S+ C ++ K A        + RLI I       K +
Sbjct: 62   SIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKY-----KAM 116

Query: 1189 DPDIRLYLKSNTYLQWGD----KLFWEKLKFALPDVPNNQRNNN 1228
              +    L+  T   + +      FW +L  AL     +  +++
Sbjct: 117  KKEFPSILRFITVCDYTNPCTKSWFWTRLAKALSLPLEHHHHHH 160

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score =  177 bits (451), Expect = 9e-52
 Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 9/147 (6%)

Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
            R+  +DAFVSYS +D  +V   +   LEN +P +KL LH R+F  G +I D I+ ++E S
Sbjct: 2    RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVL-RGKKRLIVILLGEVPQKDLDP---DIRLYL 1196
             +T+ VLSENF+KSEW +YE   +H ++        I+ILL  + +K +      +R  +
Sbjct: 62   HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIM 121

Query: 1197 KSNTYLQW-----GDKLFWEKLKFALP 1218
             + TYL+W       + FW  L+ A+ 
Sbjct: 122  NTKTYLEWPMDEAQREGFWVNLRAAIK 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  181 bits (462), Expect = 3e-51
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           +   + L  N + ++P   F   R+L  ++L +N +  +    F  L  L  LDLS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
               V+ ATF GL RL  L++    + +L   +F+ L  LQ L+L++N ++++  +TF  
Sbjct: 93  LRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           L NL  L +  N++  +   +   L +L  L L  N + ++  +A ++   L   +L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 450 KLTEIPK-VLRNLHSLKTLDLGDN 472
            L+ +P   L  L +L+ L L DN
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  174 bits (442), Expect = 1e-48
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 3/202 (1%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE-L 427
            Q + L  N+I  +   +F +  NL  L + +N L RI++ +   L  L  L L +N  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
             ++         L   HL+   L E+   + R L +L+ L L DN +  + + +   L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
            L  L L  N IS++ +  F  L  L  L L  N++  V    F +   L+ + L  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 547 TDI-GGLFPKLPNLVWLNISEN 567
           + +       L  L +L +++N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  167 bits (425), Expect = 2e-46
 Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 9/211 (4%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           + + + L  N I  +P A F   ++L+ L L  N L+ +   +F+          L  LD
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLEQLD 86

Query: 228 LSNNS-FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
           LS+N+   S+    F  L RL  L+L    L  L      GL +L  L L  N L  +P 
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
           + F    +L  ++L  N I+ +    F  L  L  L L  N +    V+   F  L RL+
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLM 204

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377
            L +  N ++ L +     L  LQ L L +N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  154 bits (391), Expect = 8e-42
 Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 12/203 (5%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           S +   SF+   +L  L +    +  + A +F GL  L+ L L   N    +    +   
Sbjct: 45  SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-DNAQLRS----VDPA 99

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
            F   L  L +L L    +  L   +F  L +L YL L  N L  +   +F +       
Sbjct: 100 TFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------ 152

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
            NL  L L  N   S+P   F  L  L  L L  N +  +  HA   L  L  L L  NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 281 LVNIPPELFNQSRDLKEVYLQNN 303
           L  +P E     R L+ + L +N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  151 bits (384), Expect = 8e-41
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVFTDELQSLES 171
             + + +   +I ++ A SFR  R L  L L   N       L  I    FT  L  LE 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLH-SN------VLARIDAAAFTG-LALLEQ 84

Query: 172 LDLSMNS-IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
           LDLS N+ + ++  A F  L  L  L+L +  L  +    F           L+ L L +
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQD 138

Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
           N+  +LP + F  L  L  L+L GN ++ + + A  GL+SL  L L  N + ++ P  F 
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
               L  +YL  N+++ L       L  L  L L++N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  150 bits (381), Expect = 2e-40
 Identities = 71/312 (22%), Positives = 116/312 (37%), Gaps = 60/312 (19%)

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
               L  +P  +    + + + L  N I+ +   S  +   L  L L  N ++ I    F
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 507 EKLSVLTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNI 564
             L++L  L+L+ N +++ V+  TF     L  + LD   L ++  GLF  L  L +L +
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 565 SENLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT 617
            +N L+      +P D       L  L +HGN+IS +              F      L 
Sbjct: 137 QDNALQ-----ALPDDTFRDLGNLTHLFLHGNRISSVPERA----------FR----GLH 177

Query: 618 ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS 677
            L           L L  N ++ V P+ F     L  + L  N L  +   AL  +PL +
Sbjct: 178 SLD---------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRA 226

Query: 678 HKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL--- 734
            + +    + +NP+ CDC  + L        +          V C      + P  L   
Sbjct: 227 LQYL---RLNDNPWVCDCRARPL----WAWLQKFRGSS--SEVPC------SLPQRLAGR 271

Query: 735 -LKEAHSNQFLC 745
            LK   +N    
Sbjct: 272 DLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  124 bits (313), Expect = 2e-31
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 6/159 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L+LD   +  +G   F G   LQ L+L  + ++ + + TF  L  L  L L  NR++ 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA--VWHLSSQI 923
           +    F  L +L  L L  N++ ++    F  L  L  L L  N +++           +
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
           Q + L  NPW CDC        +LQ+ R S    S++ C
Sbjct: 228 QYLRLNDNPWVCDCRARP-LWAWLQKFRGSS---SEVPC 262

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score =  172 bits (437), Expect = 7e-50
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVES 1139
               K +D  V +S +D     ++L   LE    + +  L  R+   GG I   + QA+ S
Sbjct: 6    RWSKDYDVCVCHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSS 64

Query: 1140 SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSN 1199
            S   +++++  F++  WC+Y+   A  +    +   I +L   + +    P     L+  
Sbjct: 65   SHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS-GLSRAAYPP----ELRFM 119

Query: 1200 TYLQW-GDKLFWEKLKFALP 1218
             Y+   G    + ++K A+ 
Sbjct: 120  YYVDGRGPDGGFRQVKEAVM 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  165 bits (419), Expect = 1e-45
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 6/208 (2%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           + + LDLS N    L +  F     LQ L L    +  + D A   L+ L+ L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
            ++    F+    L+++     ++  L       L  L  L++++N +   +     FS 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQV----LHLENNQIESIHRNTFASLSNLHTLI 397
           L  L  L+++ NK+  +  +  + L+++ +    L L  N +  I    F  +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206

Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNN 425
           +  N+LK +     D LT+L  + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  158 bits (403), Expect = 2e-43
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L++++N +  L S  F     LQVL L   +I++I    + SLS+L TLI++ N ++ +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSL 464
              +   L++L  L      L  +E   + +  +L++ ++  N +      +   NL +L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 465 KTLDLGDNLITEINNLSLNSLHQL----AGLRLTENNISNISKGVFEKLSVLTILNLASN 520
           + LDL  N I  I    L  LHQ+      L L+ N ++ I  G F+++  L  L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210

Query: 521 KIQKVEAGTFDNNSNLVAIRLDGN 544
           +++ V  G FD  ++L  I L  N
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  150 bits (380), Expect = 2e-40
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
            + L L  N +  +   +F S   L  L +S  +++ IE  +  SL+ LS L L  N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSL-NSLH 486
            +   A    +SLQ        L  +    + +L +LK L++  NLI         ++L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTI----LNLASNKIQKVEAGTFDNNSNLVAIRLD 542
            L  L L+ N I +I       L  + +    L+L+ N +  ++ G F     L  + LD
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALD 208

Query: 543 GNYLTDI-GGLFPKLPNLVWLNISEN 567
            N L  +  G+F +L +L  + +  N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  135 bits (341), Expect = 2e-35
 Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
             K+L + F  + +L + SF    +L+ L L             I    +   L  L +L
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAY-QSLSHLSTL 81

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
            L+ N I +L    F  L SL  L   +  L+++  F   +         L+ L++++N 
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------KTLKELNVAHNL 135

Query: 233 FDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTV----LNLSVNNLVNIPPE 287
             S      FS L+ L+ L L  N +  +    L  L+ + +    L+LS+N +  I P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            F + R LKE+ L  N +  +  GIF+ LT L  + L  N
Sbjct: 196 AFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  133 bits (336), Expect = 1e-34
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 20/213 (9%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
            +   L +S N L+ + S S  S   L VL L   E++ IE+ A ++ + L    L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 451 LTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI-SKGVFEK 508
           +  +       L SL+ L   +  +  + N  +  L  L  L +  N I +      F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIR----LDGNYLTDI-GGLFPKLPNLVWLN 563
           L+ L  L+L+SNKIQ +          +  +     L  N +  I  G F ++  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206

Query: 564 ISENLLEWFDYALIPAD-------LQWLDIHGN 589
           +  N L+      +P         LQ + +H N
Sbjct: 207 LDTNQLK-----SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  128 bits (324), Expect = 6e-33
 Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 44/271 (16%)

Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
                 +IP  L    S K LDL  N +  + + S  S  +L  L L+   I  I  G +
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNIS 565
           + LS L+ L L  N IQ +  G F   S+L  +      L  +       L  L  LN++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 566 ENLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
            NL++    +    +       L+ LD+  N+I  +            T        L +
Sbjct: 133 HNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYC----------TDLR----VLHQ 174

Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSH 678
           +    +     +L L+ N ++ +QP   F +  L  + L  N+LK++         L S 
Sbjct: 175 MPLLNL-----SLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIF--DRLTSL 226

Query: 679 KNIPDFYIGENPFQCDCNM-----QWLQSYS 704
           + I   ++  NP+ C C       +WL   S
Sbjct: 227 QKI---WLHTNPWDCSCPRIDYLSRWLNKNS 254

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  105 bits (264), Expect = 4e-25
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
           C              C    +  ++P  +P     L L  N +  +GS+SF    +LQ+L
Sbjct: 3   CVEVVP----NITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
            L+   ++TI +  +  L  L  L L  N +  +    F  L +L++L      +  + N
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 893 RTFLSLTHLKVLQLDHNRITSF 914
                L  LK L + HN I SF
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 43/183 (23%), Positives = 62/183 (33%), Gaps = 40/183 (21%)

Query: 793 YDNQLPPRIPMDA-------TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK 845
              ++   I   A       + L L GN I  +   +F G   LQ L    +++ ++ N 
Sbjct: 60  SRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 846 TFNGLKELIILRLDDNRLTEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKV- 903
               LK L  L +  N +   +  E F  L NL  L L  NKI  I       L  + + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 904 ---LQLDHNRITSF--------------------------AVWHLSSQIQSITLTSNPWS 934
              L L  N +                                 L+S +Q I L +NPW 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWD 237

Query: 935 CDC 937
           C C
Sbjct: 238 CSC 240

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 42/179 (23%), Positives = 57/179 (31%), Gaps = 57/179 (31%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           +SL       L  LK+L+V    I +                                  
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-----------------------------KLPE 143

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
            F   L +LE LDLS N I ++       L  +  LNL+                     
Sbjct: 144 YF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------------- 181

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
                LDLS N  + +    F  + RL+EL L  N L  + D   D L SL  + L  N
Sbjct: 182 -----LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 18/109 (16%)

Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
           QS   P  F  L +L+ L +   KI ++     R L ++  L L           LD+S 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----------LDLSL 186

Query: 160 NVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           N           E++ L+ L L  N + ++PD IF  L SL  + L  N
Sbjct: 187 NPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  158 bits (402), Expect = 1e-42
 Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 12/255 (4%)

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
           C  + RV     +    +P++         EL      L  +   A  G   L  + +S 
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 279 NNLV-NIPPELFNQSRDLKEVYLQN-NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
           N+++  I  ++F+    L E+ ++  N++  + P  F  L  L  L +SN  +    +  
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPD 121

Query: 337 ATFSGLHRLVVLNIAYN-KMNKLDSSIFKDL-YRLQVLHLENNQIESIHRNTFASLSNLH 394
                  + V+L+I  N  ++ ++ + F  L +   +L L  N I+ IH + F       
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
             +  NN L+ + ++     +   +L +    +  +    L+N   L+        L ++
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 239

Query: 455 PKVLRNLHSLKTLDL 469
           P  L  L +L    L
Sbjct: 240 P-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  147 bits (372), Expect = 1e-38
 Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 13/249 (5%)

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI-E 380
                +++TE  + +        L        K+  +    F     L+ + +  N + E
Sbjct: 14  FLCQESKVTE--IPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 381 SIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
            I  + F++L  LH + +   N L  I   +  +L  L  L + N  ++++ +    +S 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 440 SLQDFHLNGN-KLTEIP-KVLRNLHS-LKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
                 +  N  +  I       L      L L  N I EI+N + N            N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKL 556
           N+  +   VF   S   IL+++  +I  + +   +N   L         L  +     KL
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNLKKL-PTLEKL 245

Query: 557 PNLVWLNIS 565
             L+  +++
Sbjct: 246 VALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  142 bits (359), Expect = 6e-37
 Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 38/261 (14%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           +   L   +  +  +    F     L  + ++QN +                        
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL----------------------- 67

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQ-GNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
                 + + A+ FS L +L E+ ++  N L ++   A   L +L  L +S   + ++P 
Sbjct: 68  ------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 287 ELFNQSRDLKEVYLQ-NNSINVLAPGIFNVLT-QLIVLDLSNNELTEEWVNAATFSGLHR 344
                S     + +Q N +I+ +    F  L+ + ++L L+ N + E  ++ + F+G   
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNGTQL 179

Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
             +     N + +L + +F       +L +   +I S+      +L  L     S   LK
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLK 237

Query: 405 RIESNSLDSLTALSVLSLDNN 425
           ++   +L+ L AL   SL   
Sbjct: 238 KLP--TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  133 bits (336), Expect = 7e-34
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 21/244 (8%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           +  +L     K+  +  G+F G   L+ + + + N         I  +VF   L  L  +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEI-SQNDVLEV----IEADVF-SNLPKLHEI 84

Query: 173 DLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLS-N 230
            +   N++  +    F  L +L YL ++   + ++      +       +   +LD+  N
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH------SLQKVLLDIQDN 138

Query: 231 NSFDSLPAEGFSRLS-RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF 289
            +  ++    F  LS     L+L  N +  + + A +G     +     NNL  +P ++F
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
           + +     + +    I+ L       L +L      N +         T   L  L+  +
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK------KLPTLEKLVALMEAS 252

Query: 350 IAYN 353
           + Y 
Sbjct: 253 LTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  121 bits (305), Expect = 7e-30
 Identities = 59/357 (16%), Positives = 114/357 (31%), Gaps = 57/357 (15%)

Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI- 498
           S + F    +K+TEIP  L    +   L      +  I   + +    L  + +++N++ 
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 499 SNISKGVFEKLSVLTILNLA-SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
             I   VF  L  L  + +  +N +  +    F N  NL  + +    +  +        
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 557 PNLVWLNISENL----LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDAS 612
              V L+I +N+    +E   +  +  +   L ++ N I E+ N            F+ +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----------FNGT 177

Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI------N 666
              L EL               NN + ++    F        +D+   R+ ++      N
Sbjct: 178 Q--LDEL-----------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 667 QTALRISPLPSHKNIPDFYIG--------ENPFQCDCNMQWLQSYS-VNKERNKPNLVDL 717
              LR     + K +P               P  C     W +  S ++   NK  L   
Sbjct: 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQ- 283

Query: 718 DTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCT 774
                  +         L E + + +   ++          +FD   C       C+
Sbjct: 284 ---EVDYMTQARGQRSSLAEDNESSYSRGFDMTYT------EFDYDLCNEVVDVTCS 331

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
             ++P +FQ L +L+ L +    I +L         +   L ++ +    +     I  N
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-----IERN 147

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
            F         L L+ N I  + ++ F   Q         N L  +    F         
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS----- 202

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
               +LD+S     SLP+ G   L +L+        L  L    L+ L +L   +L+  
Sbjct: 203 -GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL--PTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 96.8 bits (241), Expect = 1e-21
 Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 769 CPN-NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           C +  C C +       V  C       ++P  +P +A EL     ++ V+   +F G  
Sbjct: 2   CHHRICHCSN------RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG 54

Query: 828 KLQILFLNSSH-VETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLRELYLQYN 885
            L+ + ++ +  +E I    F+ L +L  +R++  N L  I    F+ L NL+ L +   
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 886 KIIYISNRTFLSLTHLKVLQLDHN----RITSFAVWHLSSQIQSITLTSN 931
            I ++ +   +      +L +  N     I   +   LS +   + L  N
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 806 TELYLDGN-RIPVVGSHSFIG-RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
             L +  N  I  +  +SF+G   +  IL+LN + ++ IHN  FNG +   +   D+N L
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190

Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQI 923
            E+    F        L +   +I  + +    +L  L+        +           +
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVAL 248

Query: 924 QSITLTSNPWSCDC 937
              +L + P  C  
Sbjct: 249 MEASL-TYPSHCCA 261

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score =  149 bits (378), Expect = 8e-42
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 24/159 (15%)

Query: 1083 KLFDAFVSYSSKD-----------EAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGD 1131
            K +DA++SY+  D           E F  E L  +LE     YKL +  R+    G   +
Sbjct: 1    KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIE 59

Query: 1132 TIVQAVESSRRTIMVLSENF-IKSEWCRYEFKSAHHQVL-RGKKRLIVILLGEVPQKDLD 1189
             + + V+ S+R I+V++ N+ ++  W  +E ++    +L  G+ ++I+I   E+      
Sbjct: 60   DVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNY 119

Query: 1190 PD---IRLYLKSNTYLQWGD-------KLFWEKLKFALP 1218
             +   ++  +K  T ++W           FW++L++ +P
Sbjct: 120  QEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEMP 158

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  161 bits (409), Expect = 2e-41
 Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 53/324 (16%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV-ATFSFSNYDTARCGINLR 224
                 L++  + + TLPD +      ++ L +  N L+++ A               LR
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP-----------ELR 84

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
            L++S N   SLP      L  L         L  L        + L  L +  N L ++
Sbjct: 85  TLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL 136

Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
           P         L+E+ + +N +  L        ++L  L   NN+LT              
Sbjct: 137 PVLPPG----LQELSVSDNQLASLPALP----SELCKLWAYNNQLTS------LPMLPSG 182

Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
           L  L+++ N++  L +   +    L  L   NN++ S+     A  S L  LI+S N+L 
Sbjct: 183 LQELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLT 234

Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
            +        + L  L +  N L  +        + L    +  N+LT +P+ L +L S 
Sbjct: 235 SLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 465 KTLDLGDNLITEINNLSLNSLHQL 488
            T++L  N ++E    +L  +   
Sbjct: 287 TTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  153 bits (388), Expect = 9e-39
 Identities = 78/432 (18%), Positives = 148/432 (34%), Gaps = 53/432 (12%)

Query: 181 TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240
            +     C     + LN+ ++ L+ +     +         ++  L + +N+  SLPA  
Sbjct: 30  VVQKMRACLNNGNAVLNVGESGLTTLPDCLPA---------HITTLVIPDNNLTSLPAL- 79

Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
                 L+ L + GN LT L      GL  L++ +  + +L  +P         L ++++
Sbjct: 80  ---PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPALPSG-------LCKLWI 128

Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
             N +  L          L  L +S+N+L          +    L  L    N++  L  
Sbjct: 129 FGNQLTSLPVLP----PGLQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLPM 178

Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
                   LQ L + +NQ+ S+        S L+ L   NN+L  + +      + L  L
Sbjct: 179 LPSG----LQELSVSDNQLASL----PTLPSELYKLWAYNNRLTSLPA----LPSGLKEL 226

Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNL 480
            +  N L  +        + L++  ++GN+LT +P +      L +L +  N +T +   
Sbjct: 227 IVSGNRLTSLPVLP----SELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPE- 278

Query: 481 SLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIR 540
           SL  L     + L  N +S  +     +++     +    +     A        L    
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 541 LDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYF 598
            D       G   P  +       + ++    + D      +         QIS      
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQL 398

Query: 599 EIESQLRLTYFD 610
             +  LR   F 
Sbjct: 399 AEDEALRANTFA 410

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (358), Expect = 5e-35
 Identities = 68/340 (20%), Positives = 114/340 (33%), Gaps = 50/340 (14%)

Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
           +L I  N  T        L +L++S N + +LP      L  LS  +     L  + +  
Sbjct: 65  TLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLP-PGLLELSIFSNPLTHLPALPS-- 121

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
                       L  L +  N   SLP         LQEL +  N L  L        + 
Sbjct: 122 -----------GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP----ALPSE 162

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
           L  L    N L ++P         L+E+ + +N +  L       L +L   +     L 
Sbjct: 163 LCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLASLPTLPSE-LYKLWAYNNRLTSLP 217

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
                         L  L ++ N++  L     +    L+ L +  N++ S+        
Sbjct: 218 AL---------PSGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLP----MLP 260

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
           S L +L +  N+L R+   SL  L++ + ++L+ N L      AL+  TS   +     +
Sbjct: 261 SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

Query: 451 LTEIPKVLRNLHSLKTLDLGDNLI--TEINNLSLNSLHQL 488
                           L   D L+   E      +  H  
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (358), Expect = 6e-35
 Identities = 69/407 (16%), Positives = 131/407 (32%), Gaps = 78/407 (19%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
              VL++  +   +LP    + +     L +  N LT L          L  L +S N L
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHI---TTLVIPDNNLTSLPAL----PPELRTLEVSGNQL 93

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
            ++P                              L +L +       L            
Sbjct: 94  TSLPVLPPG-------------------------LLELSIFSNPLTHLPAL--------- 119

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
              L  L I  N++  L          LQ L + +NQ+ S+     A  S L  L   NN
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPG----LQELSVSDNQLASLP----ALPSELCKLWAYNN 171

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
           +L  +        + L  LS+ +N+L  +        + L       N+LT +P      
Sbjct: 172 QLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPA---LP 220

Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
             LK L +  N +T +         +L  L ++ N ++++        S L  L++  N+
Sbjct: 221 SGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQ 272

Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADL 581
           + ++      + S+   + L+GN L++      +            +      A  P + 
Sbjct: 273 LTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 582 QWLDIHGN---------QISELGNYFEIESQLRLTYFDASSNKLTEL 619
           + L +            + +    +     +     F    ++L+E 
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  135 bits (340), Expect = 9e-33
 Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 93/408 (22%)

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            N   VLN+  + L  +P  L      +  + + +N++  L         +L  L++S N
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALP----PELRTLEVSGN 91

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
           +LT          GL  L + +     +  L S        L  L +  NQ+ S+     
Sbjct: 92  QLTSL---PVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP---- 137

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
                L  L +S+N+L  +        + L  L   NN+L  +        + LQ+  ++
Sbjct: 138 VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFE 507
            N+L  +P        L  L   +N +T +  L       L  L ++ N ++++      
Sbjct: 190 DNQLASLPT---LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----V 238

Query: 508 KLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
             S L  L ++ N++                                 LP L        
Sbjct: 239 LPSELKELMVSGNRLTS-------------------------------LPML-------- 259

Query: 568 LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS 627
                     P+ L  L ++ NQ++ L     +      T  +   N L+E T  A+   
Sbjct: 260 ----------PSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTLQALREI 307

Query: 628 VENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
                 +  +I           P  TR   +      +       +P 
Sbjct: 308 TSAPGYSGPIIR--FDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 3e-28
 Identities = 67/370 (18%), Positives = 113/370 (30%), Gaps = 78/370 (21%)

Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLD 173
           L+ L V   ++ +L      GL +L                              L  L 
Sbjct: 83  LRTLEVSGNQLTSLPV-LPPGLLELSIF--------------SNPLTHLPALPSGLCKLW 127

Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
           +  N + +LP                                       L+ L +S+N  
Sbjct: 128 IFGNQLTSLPVLPP----------------------------------GLQELSVSDNQL 153

Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
            SLPA      S L +L+   N LT L        + L  L++S N L ++P        
Sbjct: 154 ASLPAL----PSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLASLPTLPSE--- 202

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
            L +++  NN +  L        + L  L +S N LT              L  L ++ N
Sbjct: 203 -LYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTS------LPVLPSELKELMVSGN 251

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
           ++  L          L  L +  NQ+  +   +   LS+  T+ +  N L      +L  
Sbjct: 252 RLTSLPMLPSG----LLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLKTLDLGD 471
           +T+    S      +    +A + + +L     +         P      H     D  D
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNAD 366

Query: 472 NLITEINNLS 481
                ++ LS
Sbjct: 367 AFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (300), Expect = 8e-28
 Identities = 62/346 (17%), Positives = 113/346 (32%), Gaps = 49/346 (14%)

Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
             +   + +      +    L +  + L  +       +T    L + +N L  +     
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLPALP- 80

Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN----LITEINNLSL--------- 482
                L+   ++GN+LT +P +   L  L            L + +  L +         
Sbjct: 81  ---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 137

Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
                L  L +++N ++++        S L  L   +N++  +        S L  + + 
Sbjct: 138 VLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGLQELSVS 189

Query: 543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
            N L     L      L  L    N L     AL    L+ L + GN+++ L        
Sbjct: 190 DNQLAS---LPTLPSELYKLWAYNNRLTSLP-ALPSG-LKELIVSGNRLTSLPV--LPSE 242

Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
              L     S N+LT L    +P  + +L +  N ++++ P +     + T V+L GN L
Sbjct: 243 ---LKELMVSGNRLTSL--PMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL 296

Query: 663 KNINQTALR--------ISPLPSHKNIPDFYIGENPFQCDCNMQWL 700
                 ALR          P+            E          WL
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
            L   +N  T        L+ L +S N + +LP         L  L ++ N+L+++    
Sbjct: 205 KLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP----SELKELMVSGNRLTSLP--- 257

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
                       L  L +  N    LP      LS    + L+GN L+     AL  + S
Sbjct: 258 ------MLPS-GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
               +  +            ++R      L   + + L P             +   E  
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRA-----LHLAAADWLVPAREGEPAPADRWHMFGQED- 363

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
               NA  FS     +     + K     + I   L +L 
Sbjct: 364 ----NADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLA 399

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 5e-08
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
            LP  +P   T L +  N +  + +       +L+ L ++ + + ++      GL EL I
Sbjct: 54  TLPDCLPAHITTLVIPDNNLTSLPAL--PP--ELRTLEVSGNQLTSL-PVLPPGLLELSI 108

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
                  L  +          L +L++  N++  +          L+ L +  N++ S  
Sbjct: 109 FSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP 157

Query: 916 VWHLSSQIQSITLTSN 931
              L S++  +   +N
Sbjct: 158 A--LPSELCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 794 DNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKEL 853
              LP  +P    +L++ GN++  +          LQ L ++ + + ++         EL
Sbjct: 113 LTHLP-ALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPA----LPSEL 163

Query: 854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
             L   +N+LT +          L+EL +  N++  +        + L  L   +NR+TS
Sbjct: 164 CKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS 215

Query: 914 FAVWHLSSQIQSITLTSNP 932
                L S ++ + ++ N 
Sbjct: 216 LPA--LPSGLKELIVSGNR 232

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 29/136 (21%)

Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
             LP   P +   L + GN++  +      G  +L I     +H+  +          L 
Sbjct: 74  TSLPALPP-ELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLC 124

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI-------------SNR-TFL--SL 898
            L +  N+LT +          L+EL +  N++  +             +N+ T L    
Sbjct: 125 KLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180

Query: 899 THLKVLQLDHNRITSF 914
           + L+ L +  N++ S 
Sbjct: 181 SGLQELSVSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 793 YDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGL 850
           Y+N+L   P +P    EL + GNR+  +         +L+ L ++ + + ++        
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PS--ELKELMVSGNRLTSLPM----LP 260

Query: 851 KELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
             L+ L +  N+LT +       L +   + L+ N    +S RT  +L  +         
Sbjct: 261 SGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNP---LSERTLQALREITSAPGYSGP 316

Query: 911 ITSFAVWHLS--SQIQSITLTSNPW 933
           I  F +   S   + +++ L +  W
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADW 341

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  152 bits (387), Expect = 3e-41
 Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 8/207 (3%)

Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
             + S   +N    NL  +PP+L    +D   ++L  N +   +       T+L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
             ELT+  V       L  L  L++++N++  L   + + L  L VL +  N++ S+   
Sbjct: 64  RAELTKLQV----DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
               L  L  L +  N+LK +    L     L  LSL NN L  +    L    +L    
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDN 472
           L  N L  IPK     H L    L  N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  141 bits (356), Expect = 4e-37
 Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 9/210 (4%)

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
                 +   ++    +  +LP +          L+L  N+L   +   L     LT LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN 335
           L    L  +          L  + L +N +  L P +   L  L VLD+S N LT   + 
Sbjct: 62  LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS--LP 116

Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
                GL  L  L +  N++  L   +     +L+ L L NN +  +       L NL T
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
           L++  N L  I      S   L    L  N
Sbjct: 177 LLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  134 bits (338), Expect = 9e-35
 Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 39/236 (16%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
           + S   ++    ++  LP  +    +  + L+L++N L   +  +   Y        L  
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYT------RLTQ 59

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           L+L       L       L  L  L L  N L  L       L +LTVL++S N L ++P
Sbjct: 60  LNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLP 116

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
                   +L+E+YL+ N +  L PG+     +L  L L+NN LTE              
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-------------- 162

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
                       L + +   L  L  L L+ N + +I +  F S   L    +  N
Sbjct: 163 ------------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  131 bits (331), Expect = 9e-34
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 7/200 (3%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
              ++ +   + ++  +     + LH   +S N L      +L   T L+ L+LD  EL 
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            ++         L    L+ N+L  +P + + L +L  LD+  N +T +   +L  L +L
Sbjct: 69  KLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N +  +  G+      L  L+LA+N + ++ AG  +   NL  + L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 549 I-GGLFPKLPNLVWLNISEN 567
           I  G F     L +  +  N
Sbjct: 187 IPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (286), Expect = 8e-28
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           D   L +    +   S  +     +L  L L             ++       L  L +L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------LTKLQVDGTLPVLGTL 82

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
           DLS N + +LP  +   L +L+ L+++ N+L+++   +            L+ L L  N 
Sbjct: 83  DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGL------GELQELYLKGNE 135

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
             +LP    +   +L++L L  N LT L    L+GL +L  L L  N+L  IP   F  S
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-S 194

Query: 293 RDLKEVYLQNN 303
             L   +L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  109 bits (274), Expect = 3e-26
 Identities = 55/282 (19%), Positives = 95/282 (33%), Gaps = 58/282 (20%)

Query: 459 RNLHSLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
             + S   ++     +T +  +L  +       L L+EN +   S       + LT LNL
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKD----TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
              ++ K++         L  + L  N L  +  L   LP L  L++S N L       +
Sbjct: 63  DRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SL 115

Query: 578 PAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVEN 630
           P         LQ L + GN++  L                       +L           
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP----------GLLT----PTPKLE---------K 152

Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
           L L NN ++++         NL  + L  N L  I +             +P  ++  NP
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNP 206

Query: 691 FQCDCNM----QWLQSYS------VNKERNKPNLVDLDTVTC 722
           + C+C +    +WLQ  +            K    ++ +V C
Sbjct: 207 WLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQC 248

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  103 bits (258), Expect = 3e-24
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N++  +          L +L ++ + + ++      GL EL  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS-----FAVWHLS 920
           +          L +L L  N +  +       L +L  L L  N + +     F     S
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG----S 194

Query: 921 SQIQSITLTSNPWSCDCD 938
             +    L  NPW C+C+
Sbjct: 195 HLLPFAFLHGNPWLCNCE 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 38/151 (25%)

Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD 164
           P   QTL  L  L V F ++ +L  G+ RGL +L+                         
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE------------------------ 128

Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
                  L L  N + TLP  +  P   L  L+L  N L+ +     +         NL 
Sbjct: 129 -------LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL------ENLD 175

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
            L L  NS  ++P   F     L   +L GN
Sbjct: 176 TLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           +SL  G+ + L +L++L ++  ++  L  G      KL+ L+L  +N         +   
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTE-----LPAG 166

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           +  + L++L++L L  NS++T+P   F     L +  L  N
Sbjct: 167 LL-NGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
           +   L+L  N +   S  T +  T L  L LD   +T   V      + ++ L+ N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  151 bits (384), Expect = 4e-41
 Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 26/204 (12%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           + + LDL +N   SLP++ F RL++L+ LYL  N L  L       L +L  L ++ N L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +P  +F+Q  +L E+ L  N +  L P +F+ LT+L  L L  NEL            
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------- 147

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
                           L   +F  L  L+ L L NNQ++ +    F  L+ L TL + NN
Sbjct: 148 ----------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 402 KLKRIESNSLDSLTALSVLSLDNN 425
           +LKR+   + DSL  L +L L  N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  148 bits (377), Expect = 4e-40
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
           N+   ++ S   L  IP  +     D K++ LQ+N ++ L    F+ LT+L +L L++N+
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
           L    + A  F  L  L  L +  NK+  L   +F  L  L  L L+ NQ++S+    F 
Sbjct: 73  LQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
           SL+ L  L +  N+L+ +     D LT+L  L L NN+L+ + E A    T L+   L+ 
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 449 NKLTEIPK-VLRNLHSLKTLDLGDN 472
           N+L  +P+    +L  LK L L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  131 bits (332), Expect = 4e-34
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
             + LDL  N + +LP   F  L  L  L L  NKL  +    F          NL  L 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------NLETLW 91

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
           +++N   +LP   F +L  L EL L  N L  L     D L  LT L+L  N L ++P  
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
           +F++   LKE+ L NN +  +  G F+ LT+L  L L NN+L    V    F  L +L +
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKM 209

Query: 348 LNIAYN 353
           L +  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  122 bits (309), Expect = 4e-31
 Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 157 ISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
           +    F   L  L  L L+ N + TLP  IF  L++L  L +T NKL  +    F     
Sbjct: 52  LPSKAF-HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL-- 108

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
               +NL  L L  N   SLP   F  L++L  L L  N L  L     D L SL  L L
Sbjct: 109 ----VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
             N L  +P   F++  +LK + L NN +  +  G F+ L +L +L L  N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  119 bits (301), Expect = 6e-30
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 15/192 (7%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVFTDELQSLES 171
           D K L ++  K+ +L + +F  L KL+ L L       +   L  +   +F  EL++LE+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL-------NDNKLQTLPAGIF-KELKNLET 89

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           L ++ N +  LP  +F  L +L+ L L +N+L ++    F +         L  L L  N
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL------TKLTYLSLGYN 143

Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQ 291
              SLP   F +L+ L+EL L  N L  + + A D L  L  L L  N L  +P   F+ 
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 292 SRDLKEVYLQNN 303
              LK + LQ N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  116 bits (293), Expect = 5e-29
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 19/196 (9%)

Query: 408 SNSLDSL-----TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNL 461
           S  L ++          L L +N+L  +   A    T L+  +LN NKL  +P  + + L
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84

Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
            +L+TL + DN +  +     + L  LA LRL  N + ++   VF+ L+ LT L+L  N+
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
           +Q +  G FD  ++L  +RL  N L  +  G F KL  L  L +  N L+      +P  
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-----RVPEG 199

Query: 581 -------LQWLDIHGN 589
                  L+ L +  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  109 bits (274), Expect = 2e-26
 Identities = 71/292 (24%), Positives = 112/292 (38%), Gaps = 66/292 (22%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNL-HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
           + +      +  KLT IP    N+    K LDL  N ++ + + + + L +L  L L +N
Sbjct: 15  NNNKNSVDCSSKKLTAIP---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPK 555
            +  +  G+F++L  L  L +  NK+Q +  G FD   NL  +RLD N L  +   +F  
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNK 615
           L  L                       +L +  N++  L              FD    K
Sbjct: 132 LTKL----------------------TYLSLGYNELQSLPK----------GVFD----K 155

Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
           LT L           L L NN + +V    F     L  + L  N+LK + + A     L
Sbjct: 156 LTSLK---------ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSL 204

Query: 676 PSHKNIPDFYIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
              K +    + ENP+ C CN      +WL+  + ++          DT  C
Sbjct: 205 EKLKML---QLQENPWDCTCNGIIYMAKWLKKKA-DEGLGGV-----DTAGC 247

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 95.8 bits (239), Expect = 8e-22
 Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 63/223 (28%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIG 825
               C+C    +   N +DCS      +L   P  IP D  +L L  N++  + S +F  
Sbjct: 8   DGGVCSC----NNNKNSVDCS----SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR 59

Query: 826 RKKLQILFLNSSHVETI-----------------HNK-------TFNGLKELIILRLDDN 861
             KL++L+LN + ++T+                  NK        F+ L  L  LRLD N
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF------- 914
           +L  +    F+ L  L  L L YN++  +    F  LT LK L+L +N++          
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 915 --------------------AVWHLSSQIQSITLTSNPWSCDC 937
                               A   L   ++ + L  NPW C C
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEK-LKMLQLQENPWDCTC 221

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 48/155 (30%), Positives = 64/155 (41%), Gaps = 13/155 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            +L  G F+ L +L+ L V   K+  L  G F  L  L  L L        +    +   
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL--DRNQLKS----LPPR 127

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
           VF D L  L  L L  N + +LP  +F  L SL  L L  N+L  V   +F         
Sbjct: 128 VF-DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT----- 181

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
             L+ L L NN    +P   F  L +L+ L LQ N
Sbjct: 182 -ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  139 bits (352), Expect = 6e-36
 Identities = 55/237 (23%), Positives = 88/237 (37%), Gaps = 46/237 (19%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSH-SF 823
           +CP NC C       +N++ CS      QL   P  +P     L L  N +  + +  + 
Sbjct: 11  SCPANCLCA------SNILSCS----KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP 60

Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ 883
                L  L L+ +H+  I ++ F  +  L  L L  N L  +  + F  L+ L  L L 
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSF----------------------------- 914
            N I+ +    F  +  L+ L L  N+I+ F                             
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 915 -AVWHLSS-QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI-SQIRCMTGSEV 968
             +  L +     + L +NP  CDC   + F  +  R  SSV D    + CM   ++
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  129 bits (325), Expect = 2e-32
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 14/247 (5%)

Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
             +      +  +   + +      +LDLS+N L+         + L  L  L +++N +
Sbjct: 21  NILSCSKQQLPNVPQSLPSYTA---LLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHL 76

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
           N + S  F  +  L+ L L +N + ++    F+ L  L  L++ NN +  ++ N+ + + 
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 416 ALSVLSLDNNELEYIEENALKNS---TSLQDFHLNGNKLTEIPK-VLRNLHSLK--TLDL 469
            L  L L  N++       +K+      L    L+ NKL ++P   L+ L +     L L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 470 GDNLIT----EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
            +N +          S     QL+ +   + ++  +       +  L   N +  K    
Sbjct: 197 HNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAW 256

Query: 526 EAGTFDN 532
           EA   D 
Sbjct: 257 EAHLGDT 263

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  114 bits (287), Expect = 2e-27
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 15/187 (8%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV-ATFSFSNYDTARCGINLRVL 226
           +   L  S   +  +P ++       + L+L+ N LS + A ++ +         NL  L
Sbjct: 19  ASNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRL------TNLHSL 69

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
            LS+N  + + +E F  +  L+ L L  N L  L +     L +L VL L  N++V +  
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIF---NVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
             F     L+++YL  N I+     +    N L +L++LDLS+N+L +  +       L 
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK--LPLTDLQKLP 187

Query: 344 RLVVLNI 350
             V   +
Sbjct: 188 AWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  112 bits (282), Expect = 1e-26
 Identities = 58/332 (17%), Positives = 105/332 (31%), Gaps = 84/332 (25%)

Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISK 503
             +  +L  +P+ L +      LDL  N ++ +    +   L  L  L L+ N+++ IS 
Sbjct: 24  SCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
             F  +  L  L+L+SN +  ++   F +   L                           
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL--------------------------- 114

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
                             + L ++ N I  +              F+     + +L    
Sbjct: 115 ------------------EVLLLYNNHIVVVDRNA----------FE----DMAQLQ--- 139

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMK---PNLTRVDLVGNRLKNINQTALRISPLPSHKN 680
                  L+L+ N IS+            P L  +DL  N+LK +  T L+  P      
Sbjct: 140 ------KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 681 IPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHS 740
           +   Y+  NP +CDC +  L S+   ++ +       + + C       +   L      
Sbjct: 194 L---YLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ-EDLYC------MHSKKLHNIFSL 243

Query: 741 NQFLCEYETNCAPLCHCCDFDACDCEMTCPNN 772
           + F C      A   H  D     C+      
Sbjct: 244 DFFNCSEYKESAWEAHLGDTLTIRCDTKQQGM 275

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  106 bits (267), Expect = 7e-25
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 151 STMSLDISHNVFT--------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
            T  LD+SHN  +          L +L SL LS N +  +    F P+ +L YL+L+ N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
           L  +  F FS+         L VL L NN    +    F  +++LQ+LYL  N ++    
Sbjct: 100 LHTLDEFLFSDL------QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 263 HA---LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKE--VYLQNNSIN 306
                 + L  L +L+LS N L  +P     +     +  +YL NN + 
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  106 bits (266), Expect = 1e-24
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 438 STSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE 495
            +      L+ N L+ +        L +L +L L  N +  I++ +   +  L  L L+ 
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 496 NNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLF- 553
           N++  + + +F  L  L +L L +N I  V+   F++ + L  + L  N ++     L  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 554 --PKLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQI 591
              KLP L+ L++S N L           L       L +H N +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQ-KLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 113 DLKDLSVEFCKIGNLSAG-SFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLES 171
               L +    +  L A  +   L  L +L L  HN         IS   F   + +L  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNF-----ISSEAF-VPVPNLRY 92

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           LDLS N + TL + +F  LQ+L  L L  N +  V   +F +         L+ L LS N
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM------AQLQKLYLSQN 146

Query: 232 SFDSLPAEGF---SRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
                P E     ++L +L  L L  N L  L    L  L +     L ++N
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 101 SSLSPG-SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
           S L    +   L +L  L +    +  +S+ +F  +  L+ L L + N       L  + 
Sbjct: 52  SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL-SSN------HLHTLD 104

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
             +F  +LQ+LE L L  N I  +    F  +  L  L L+QN++S        + +   
Sbjct: 105 EFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQE--LYLQGN 255
               L +LDLS+N    LP     +L    +  LYL  N
Sbjct: 164 ---KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  144 bits (364), Expect = 7e-36
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 20/280 (7%)

Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
           + E    +  I  + P   +   + I  +L    +T+      T + L+ +  +    + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSD 54

Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
           +  +     + L  +  L L  N++  I      +L NL  L +  NK+K +   SL  L
Sbjct: 55  IKSVQG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLS--SLKDL 108

Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
             L  LSL++N +  I    L +   L+  +L  NK+T+I  VL  L  L TL L DN I
Sbjct: 109 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI 165

Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
           ++I  L+   L +L  L L++N+IS++       L  L +L L S +          N  
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDY 574
               ++     L     +     +    N+  +L E+ + 
Sbjct: 222 VPNTVKNTDGSLVTPEIISDD-GDYEKPNVKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (253), Expect = 4e-22
 Identities = 57/352 (16%), Positives = 113/352 (32%), Gaps = 48/352 (13%)

Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-----E 165
             +    +++   + +          +L ++             +  +++          
Sbjct: 20  FAETIKDNLKKKSVTDAV-----TQNELNSID-----------QIIANNSDIKSVQGIQY 63

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
           L ++  L L+ N +  +       L++L +L L +NK+ +++  S  +         L+ 
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLK------KLKS 113

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           L L +N    +   G   L +L+ LYL  N +T +    L  L  L  L+L  N + +I 
Sbjct: 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
           P        L+ +YL  N I+ L       L  L VL+L + E   + +N         L
Sbjct: 170 P--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH-----QSNL 220

Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
           VV N   N     D S+            E   ++         +S +    ++  K K 
Sbjct: 221 VVPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
                +            + +   I+      +                   
Sbjct: 277 RFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWY 328

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T+L+L+GN++  +        K L  LFL+ + ++ + +     LK+L  L L+ N +++
Sbjct: 68  TKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD 123

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I G     L  L  LYL  NKI  I+      LT L  L L+ N+I+        +++Q+
Sbjct: 124 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179

Query: 926 ITLTSN 931
           + L+ N
Sbjct: 180 LYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 3e-10
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            +  L    +    + + +    +  +  N+S ++++       L  +  L L+ N+LT+
Sbjct: 24  IKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD 79

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           I+      L+NL  L+L  NKI  +S+     L  LK L L+HN I+ 
Sbjct: 80  IKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 8e-08
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             LYL  N+I  +         KL  L L  + +  I      GL +L  L L  N +++
Sbjct: 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +R      L+NL  L L   + +        +L     ++     + +  +       + 
Sbjct: 190 LRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 926 ITLTSN 931
             +  +
Sbjct: 248 PNVKWH 253

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  134 bits (339), Expect = 1e-35
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 16/228 (7%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
            CP  CTC +      N++DC   G    +P  +P   TE+ L+ N I V+   +F   K
Sbjct: 4   HCPAACTCSN------NIVDCRGKGLTE-IPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
           KL+ + L+++ +  +    F GL+ L  L L  N++TE+    FE L +L+ L L  NKI
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFRD 945
             +    F  L +L +L L  N++ + A    S    IQ++ L  NP+ CDC       D
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW-LAD 175

Query: 946 YLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPS---CNVVSTNVSSH 990
           YL  +       S  RC +   +    +  +      C+  + +   H
Sbjct: 176 YLHTNPIET---SGARCTSPRRLANKRIGQIKSKKFRCSAAAHHHHHH 220

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  110 bits (278), Expect = 1e-27
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            + +  N +  +    F    +L+ + L NNQI  +  + F  L +L++L++  NK+  +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
             +  + L +L +L L+ N++  +  +A ++  +L    L  NKL  I K     L +++
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 466 TLDLGDN 472
           T+ L  N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  108 bits (272), Expect = 1e-26
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 33/167 (19%)

Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342
           N+P         + E+ L+ N+I V+ PG F+   +L  +DLSNN+++E           
Sbjct: 29  NLPE-------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----------- 70

Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
                          L    F+ L  L  L L  N+I  + ++ F  L +L  L+++ NK
Sbjct: 71  ---------------LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           +  +  ++   L  L++LSL +N+L+ I +       ++Q  HL  N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  108 bits (272), Expect = 1e-26
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             + LE N I+ I    F+    L  + +SNN++  +  ++   L +L+ L L  N++  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
           + ++  +   SLQ   LN NK+  +     ++LH+L  L L DN +  I   + + L  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 489 AGLRLTEN 496
             + L +N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  105 bits (263), Expect = 2e-25
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
            +  + L  N+   +P   FS   +L+ + L  N ++ LA  A  GL SL  L L  N +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +P  LF     L+ + L  N IN L    F  L  L +L L +N+L    +   TFS 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSP 150

Query: 342 LHRLVVLNIAYN 353
           L  +  +++A N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  103 bits (259), Expect = 6e-25
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
             +  + +  N +K I   +      L  + L NN++  +  +A +   SL    L GNK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
           +TE+PK +   L SL+ L L                          N I+ +    F+ L
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNA------------------------NKINCLRVDAFQDL 127

Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             L +L+L  NK+Q +  GTF     +  + L  N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 98.6 bits (246), Expect = 3e-23
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
            ++ +  L  N +  IP         L+ +DL +N I+E+   +   L  L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
           I+ + K +FE L  L +L L +NKI  +    F +  NL  + L  N L  I  G F  L
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 557 PNLVWLNISEN 567
             +  +++++N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLD-ISHNVFTDELQSLES 171
            + ++ +E   I  +  G+F   +KL+ + L  +N       +  ++ + F   L+SL S
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NN------QISELAPDAF-QGLRSLNS 84

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           L L  N I  LP ++F  L SL  L L  NK++ +   +F +        NL +L L +N
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL------HNLNLLSLYDN 138

Query: 232 SFDSLPAEGFSRLSRLQELYLQGN 255
              ++    FS L  +Q ++L  N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 83.2 bits (206), Expect = 5e-18
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 81/256 (31%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           +RL +N I  I  G F     L  ++L++N+I ++    F                    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ------------------- 77

Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
                L +L                        L ++GN+I+EL            + F+
Sbjct: 78  ----GLRSL----------------------NSLVLYGNKITELPK----------SLFE 101

Query: 611 ASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
                L  L           L L  N I+ ++   F    NL  + L  N+L+ I +   
Sbjct: 102 ----GLFSLQ---------LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRAN 730
             SPL + + +   ++ +NPF CDC+++WL       +    N ++     C      AN
Sbjct: 149 --SPLRAIQTM---HLAQNPFICDCHLKWL------ADYLHTNPIETSGARCTSPRRLAN 197

Query: 731 PAILLKEAHSNQFLCE 746
             I   +  S +F C 
Sbjct: 198 KRIG--QIKSKKFRCS 211

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           S L+P +FQ L  L  L +   KI  L    F GL  L+ L L   N         +  +
Sbjct: 69  SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINC-----LRVD 122

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
            F  +L +L  L L  N + T+    F PL+++  ++L QN
Sbjct: 123 AF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  133 bits (337), Expect = 3e-35
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
             ++  +    I  + P +         L L    L    + +  FS L  +  + ++ +
Sbjct: 12  QEEDFRVTCKDIQRI-PSL---PPSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSID 65

Query: 354 -KMNKLDSSIFKDLYRLQVLHLENNQ-IESIHRNTFASLSNLHTLIMSNNKLKRI-ESNS 410
             + +L+S  F +L ++  + + N + +  I  +    L  L  L + N  LK   +   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 411 LDSLTALSVLSL-DNNELEYIEENALKN-STSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
           + S     +L + DN  +  I  NA +          L  N  T +     N   L  + 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185

Query: 469 LGDN-LITEINNLSLNSLHQ-LAGLRLTENNISNISKGVFEKLSVLTILNL 517
           L  N  +T I+  +   ++   + L +++ +++ +     E L  L   N 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  133 bits (336), Expect = 4e-35
 Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 12/227 (5%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN- 280
                 ++      +P    S     Q L L    L  +  HA   L +++ + +S++  
Sbjct: 12  QEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 281 LVNIPPELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
           L  +    F     +  + ++N  ++  + P     L  L  L + N  L        T 
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPDLTK 125

Query: 340 -SGLHRLVVLNIAYN-KMNKLDSSIFKDLYR-LQVLHLENNQIESIHRNTFASLSNLHTL 396
                   +L I  N  M  +  + F+ L      L L NN   S+    F         
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185

Query: 397 IMSNNKLKRIESNSLDSL-TALSVLSLDNNELEYIEENALKNSTSLQ 442
           +  N  L  I+ ++   + +  S+L +    +  +    L++   L 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  122 bits (308), Expect = 3e-31
 Identities = 39/235 (16%), Positives = 82/235 (34%), Gaps = 38/235 (16%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN-KLSNVATFSFSNYDTARCGINLRVL 226
           S ++L L    + T+P   F  L ++S + ++ +  L  + + SF N         +  +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS------KVTHI 85

Query: 227 DLSNN-SFDSLPAEGFSRLSRLQELYLQGNILTFLAD-HALDGLNSLTVLNLSVNN-LVN 283
           ++ N  +   +  +    L  L+ L +    L    D   +   +   +L ++ N  + +
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 284 IPPELF-NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFSG 341
           IP   F     +   + L NN    +    FN  T+L  + L+ N  LT   ++   F G
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTV--IDKDAFGG 202

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
           ++                           +L +    + ++       L  L   
Sbjct: 203 VYSG-----------------------PSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  107 bits (268), Expect = 6e-26
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 45/243 (18%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
             + L +    +  + + +F  L  +                + +S +            
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISR--------------IYVSID------------ 65

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNK-LSNVATFSFSNYDTARCGINLRVLDLSNN 231
                ++  L    F  L  ++++ +   + L+ +   +            L+ L + N 
Sbjct: 66  ----VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL------PLLKFLGIFNT 115

Query: 232 SFDSLPAEGF-SRLSRLQELYLQGN-ILTFLADHALDGLNSLTV-LNLSVNNLVNIPPEL 288
                P             L +  N  +T +  +A  GL + T+ L L  N   ++    
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

Query: 289 FNQSRDLKEVYL-QNNSINVLAPGIF-NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
           FN ++ L  VYL +N  + V+    F  V +   +LD+S   +T   + +     L  L+
Sbjct: 176 FNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSKGLEHLKELI 232

Query: 347 VLN 349
             N
Sbjct: 233 ARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 29/221 (13%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN- 497
              +DF +    +  IP +  +    +TL L +  +  I + + ++L  ++ + ++ +  
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 498 ISNISKGVFEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFP 554
           +  +    F  LS +T + + + + +  ++         L  + +    L          
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127

Query: 555 KLPNLVWLNISENL----LEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYF 609
                  L I++N     +    +  +  +   L ++ N  + +  Y F   +  +L   
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF---NGTKLDAV 184

Query: 610 DASSNK-LTELTGNA---IPHSVENLFLTNNLISKVQPYTF 646
             + NK LT +  +A   +      L ++   ++ +     
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGR 826
               C C+ +          +       +   P +P     L L    +  + SH+F   
Sbjct: 4   SSPPCECHQEED-----FRVT----CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNL 54

Query: 827 KKLQILFLNSS-HVETIHNKTFNGLKELIILRLDDNR-LTEIRGYEFERLENLRELYLQY 884
             +  ++++    ++ + + +F  L ++  + + + R LT I     + L  L+ L +  
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 885 NKIIYISNRTFL-SLTHLKVLQLDHN----RITSFAVWHLSSQIQSITLTSN 931
             +    + T + S     +L++  N     I   A   L ++  ++ L +N
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 13/152 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISH 159
           + + P + + L  LK L +    +      +          L +  +    S     I  
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-----IPV 148

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK-LSNVATFSFSNYDTAR 218
           N F        +L L  N   ++    F   + L  + L +NK L+ +   +F    +  
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYS-- 205

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQEL 250
                 +LD+S  S  +LP++G   L  L   
Sbjct: 206 ---GPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIG--RKKLQILFLNSSHVETIHNKTFNGL-KELIILRLDDNR 862
             L +    + +    + +        +   ++ ++ +I    F GL  E + L+L +N 
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 863 LTEIRGYEFERLENLRELYLQYNKII-YISNRTFLSL-THLKVLQLDHNRITSFAVWHLS 920
            T ++GY F     L  +YL  NK +  I    F  + +   +L +    +T+     L 
Sbjct: 168 FTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

Query: 921 SQIQSITLTSNP 932
             ++ +   +  
Sbjct: 227 H-LKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 101 SSLSPGSFQTLI-DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
           +S+   +FQ L  +   L +      ++   +F G  KL  + L  +          I  
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTV-----IDK 197

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNL 198
           + F         LD+S  S+  LP      L+ L   N 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 73/201 (36%)

Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN- 520
           H  +   +    I  I +L  +       L+L E ++  I    F  L  ++ + ++ + 
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPS----TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
            +Q++E+ +F N                       L  +  + I                
Sbjct: 67  TLQQLESHSFYN-----------------------LSKVTHIEIRNT------------- 90

Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
                     ++ +                   + L EL        ++ L + N  +  
Sbjct: 91  --------RNLTYI-----------------DPDALKELP------LLKFLGIFNTGLKM 119

Query: 641 VQPYTFFMK-PNLTRVDLVGN 660
               T          +++  N
Sbjct: 120 FPDLTKVYSTDIFFILEITDN 140

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  132 bits (335), Expect = 4e-35
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSH-SFIGR 826
            CP  C C          +DCS    +  +P  IP    EL L+ N   V+ +   F   
Sbjct: 4   ACPEKCRCE------GTTVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVLEATGIFKKL 56

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            +L+ +  +++ +  I    F G   +  + L  NRL  ++   F+ LE+L+ L L+ N+
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
           I  + N +F+ L+ +++L L  N+IT+    A   L S + ++ L +NP++C+C      
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS-LSTLNLLANPFNCNCYLAW-L 174

Query: 944 RDYLQRSRSSVHDISQIRCMTGSEV 968
            ++L++ R         RC     +
Sbjct: 175 GEWLRKKRIVT---GNPRCQKPYFL 196

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  108 bits (272), Expect = 1e-26
 Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
            L L+NNE T        F  L +L  +N + NK+  ++   F+    +  + L +N++E
Sbjct: 36  ELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
           ++    F  L +L TL++ +N++  + ++S   L+++ +LSL +N++  +   A     S
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 441 LQDFHLNGN 449
           L   +L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  108 bits (271), Expect = 1e-26
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 347 VLNIAYNKMNKLDSS-IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            L +  N+   L+++ IFK L +L+ ++  NN+I  I    F   S ++ +++++N+L+ 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
           ++      L +L  L L +N +  +  ++    +S++   L  N++T +       LHSL
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 465 KTLDLGDN 472
            TL+L  N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  101 bits (253), Expect = 4e-24
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 222 NLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
               L L+NN F  L A G F +L +L+++    N +T + + A +G + +  + L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
           L N+  ++F     LK + L++N I  +    F  L+ + +L L +N++T   V    F 
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFD 150

Query: 341 GLHRLVVLNIAYN 353
            LH L  LN+  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 50/177 (28%)

Query: 370 QVLHLENNQIESIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
             L L NN+   +     F  L  L  +  SNNK+  IE  + +  + ++ +        
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI-------- 86

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
                            L  N+L  +  K+ + L SLKTL L  N IT +          
Sbjct: 87  ----------------LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV---------- 120

Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
                             F  LS + +L+L  N+I  V  G FD   +L  + L  N
Sbjct: 121 --------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 7/138 (5%)

Query: 167 QSLESLDLSMNSIWTL-PDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
           Q    L L+ N    L    IF  L  L  +N + NK++++   +F           +  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA------SGVNE 85

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           + L++N  +++  + F  L  L+ L L+ N +T + + +  GL+S+ +L+L  N +  + 
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 286 PELFNQSRDLKEVYLQNN 303
           P  F+    L  + L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 98.2 bits (245), Expect = 4e-23
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 196 LNLTQNKLSNV-ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG 254
           L L  N+ + + AT  F           LR ++ SNN    +    F   S + E+ L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLP------QLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 255 NILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFN 314
           N L  +      GL SL  L L  N +  +  + F     ++ + L +N I  +APG F+
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 315 VLTQLIVLDLSNN 327
            L  L  L+L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 95.1 bits (237), Expect = 5e-22
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 439 TSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
               +  LN N+ T +    + + L  L+ ++  +N IT+I   +      +  + LT N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPK 555
            + N+   +F+ L  L  L L SN+I  V   +F   S++  + L  N +T +  G F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 556 LPNLVWLNISEN 567
           L +L  LN+  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 76/212 (35%)

Query: 491 LRLTENNISNI-SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
           LRL  N  + + + G+F+KL  L  +N ++NKI  +E G F+  S +  I L  N L ++
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 550 -GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTY 608
              +F  L +                      L+ L +  N+I+ +GN            
Sbjct: 97  QHKMFKGLES----------------------LKTLMLRSNRITCVGNDS---------- 124

Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQT 668
           F      L+ +           L L +N I+ V P  F                      
Sbjct: 125 FI----GLSSVR---------LLSLYDNQITTVAPGAF---------------------- 149

Query: 669 ALRISPLPSHKNIPDFYIGENPFQCDCNMQWL 700
                 L S   +    +  NPF C+C + WL
Sbjct: 150 ----DTLHSLSTL---NLLANPFNCNCYLAWL 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)

Query: 101 SSLSP-GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
           + L   G F+ L  L+ ++    KI ++  G+F G   +  + L T N       L ++ 
Sbjct: 45  TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL-TSN------RLENVQ 97

Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
           H +F   L+SL++L L  N I  + +  F  L S+  L+L  N+++ VA  +F       
Sbjct: 98  HKMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH--- 153

Query: 219 CGINLRVLDLSNNSFD 234
              +L  L+L  N F+
Sbjct: 154 ---SLSTLNLLANPFN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  135 bits (341), Expect = 4e-35
 Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 20/275 (7%)

Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
            E       I  +     +   + I  +L    +T+      T + L+ +  +    + +
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDI 58

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             +     + L  +  L L  N++  I     A+L NL  L +  NK+K + S  L  L 
Sbjct: 59  KSVQG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLK 112

Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
            L  LSL++N +  I    L +   L+  +L  NK+T+I  VL  L  L TL L DN I+
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 169

Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
           +I  L+   L +L  L L++N+IS++       L  L +L L S +          N   
Sbjct: 170 DIVPLA--GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
              ++     L     +     +    N+  +L E
Sbjct: 226 PNTVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  127 bits (321), Expect = 2e-32
 Identities = 61/281 (21%), Positives = 111/281 (39%), Gaps = 19/281 (6%)

Query: 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
            D        NL   ++ +      N+   + ++   N+ I  +       L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR 384
           + N+LT    +    + L  L  L +  NK+  L S   KDL +L+ L LE+N I  I  
Sbjct: 76  NGNKLT----DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-- 127

Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
           N    L  L +L + NNK+  I    L  LT L  LSL++N++  I    L   T LQ+ 
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNL 183

Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
           +L+ N ++++ + L  L +L  L+L             ++L     ++ T+ ++      
Sbjct: 184 YLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI- 241

Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
                      N+  +  +     +F     +   +    +
Sbjct: 242 -ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  110 bits (278), Expect = 8e-27
 Identities = 58/286 (20%), Positives = 109/286 (38%), Gaps = 28/286 (9%)

Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINL 223
           D        +L   S+          L S+  +    + + +V    +          N+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP--------NV 70

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
             L L+ N    +  +  + L  L  L+L  N +  L+  +L  L  L  L+L  N + +
Sbjct: 71  TKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISD 126

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
           I          L+ +YL NN I  +     + LT+L  L L +N+++    +    +GL 
Sbjct: 127 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS----DIVPLAGLT 178

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
           +L  L ++ N ++ L +     L  L VL L + +  +   N  ++L   +T+  ++  L
Sbjct: 179 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 404 KRIESNS----LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
              E  S     +       L    NE+ +I    +    +   FH
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  102 bits (255), Expect = 8e-24
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 37/252 (14%)

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
                  ++ I   +          +L    +T+       L+S+  +   ++ I  +  
Sbjct: 7   TITVPTPIKQIF--SDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG 63

Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
           +    L  +  L L  N +++I       L  L  L L  NK++ + +    +   L ++
Sbjct: 64  IQ--YLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL 117

Query: 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
            L+ N ++DI GL   LP L  L +                        N+I+++     
Sbjct: 118 SLEHNGISDINGL-VHLPQLESLYLG----------------------NNKITDITV--- 151

Query: 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG 659
           +    +L       N+++++   A    ++NL+L+ N IS ++        NL  ++L  
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

Query: 660 NRLKNINQTALR 671
               N       
Sbjct: 210 QECLNKPINHQS 221

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           T+L+L+GN++  +        K L  LFL+ + V+ + +     LK+L  L L+ N +++
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I G     L  L  LYL  NKI  I+      LT L  L L+ N+I+        +++Q+
Sbjct: 127 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 926 ITLTSN 931
           + L+ N
Sbjct: 183 LYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
             +  L    +      +      +  +  N+S ++++       L  +  L L+ N+LT
Sbjct: 26  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +I+      L+NL  L+L  NK+  +S+     L  LK L L+HN I+ 
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             LYL  N+I  +         KL  L L  + +  I      GL +L  L L  N +++
Sbjct: 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +R      L+NL  L L   + +        +L     ++     + +
Sbjct: 193 LRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 579 ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI 638
           A+    ++    +++     E+ S   +    A+++ +  + G     +V  LFL  N +
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
           + ++P       NL  + L  N++K+       +S L   K +    +  N
Sbjct: 81  TDIKPLANL--KNLGWLFLDENKVKD-------LSSLKDLKKLKSLSLEHN 122

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (342), Expect = 7e-35
 Identities = 56/332 (16%), Positives = 114/332 (34%), Gaps = 30/332 (9%)

Query: 166 LQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
               E+L      ++    D +    Q     +   N+  +    + SN        N +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL-SQWQRHYNADR--NRWHSAWRQANSN--------NPQ 59

Query: 225 VLDLSNNSFDSLPAE-GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
           +   +  +  +       +       L L+   L    D     L+ L  + +    L+ 
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME 118

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTE------EWVNA 336
           +P  +   +  L+ + L  N +  L   I + L +L  L +    ELTE          +
Sbjct: 119 LPDTMQQFAG-LETLTLARNPLRALPASIAS-LNRLRELSIRACPELTELPEPLASTDAS 176

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
               GL  L  L + +  +  L +SI   L  L+ L + N+ + ++       L  L  L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALG-PAIHHLPKLEEL 234

Query: 397 IMS-NNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGN-KLTE 453
            +     L+            L  L L D + L  +  + +   T L+   L G   L+ 
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR 292

Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
           +P ++  L +   + +  +L  +++     + 
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (306), Expect = 4e-30
 Identities = 52/316 (16%), Positives = 108/316 (34%), Gaps = 25/316 (7%)

Query: 268 LNSLTVLNLS-VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
            +    L       L      L       +  Y  + +                +   + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHS-AWRQANSNNPQIETRTG 65

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
             L     +    +     V L +    + +     F+ L  LQ + ++   +  +  +T
Sbjct: 66  RALKAT-ADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DT 122

Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEEN--------ALKN 437
               + L TL ++ N L+ +   S+ SL  L  LS+    EL  + E           + 
Sbjct: 123 MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
             +LQ   L    +  +P  + NL +LK+L + ++ ++ +   +++ L +L  L L    
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCT 240

Query: 498 -ISNISKGVFEKLSVLTILNLAS-NKIQKVEAGTFDNNSNLVAIRLDGNY-LTDIGGLFP 554
            + N     F   + L  L L   + +  +        + L  + L G   L+ +  L  
Sbjct: 241 ALRNYPPI-FGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 555 KLPNLVWLNISENLLE 570
           +LP    + +  +L  
Sbjct: 299 QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (303), Expect = 9e-30
 Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 32/266 (12%)

Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
                +L+L    +   PD  F  L  L ++ +    L  +   +   +        L  
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQF------AGLET 131

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGN---------ILTFLADHALDGLNSLTVLNL 276
           L L+ N   +LPA   + L+RL+EL ++           + +  A     GL +L  L L
Sbjct: 132 LTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTE--EW 333
               + ++P  + N    LK + ++N+ ++ L P I + L +L  LDL     L      
Sbjct: 191 EWTGIRSLPASIANLQN-LKSLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPP- 247

Query: 334 VNAATFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLS 391
                F G   L  L +   + +  L   I + L +L+ L L     +  +  +  A L 
Sbjct: 248 ----IFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLP-SLIAQLP 301

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTAL 417
               +++  +   +++ +   +  A 
Sbjct: 302 ANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 4e-16
 Identities = 33/265 (12%), Positives = 73/265 (27%), Gaps = 52/265 (19%)

Query: 369 LQVLHLEN-NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
            + L+ +    +   H      LS       ++       +    +     + +     L
Sbjct: 14  RENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRAL 68

Query: 428 EYIEENALK-NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
           +   +              L    L + P     L  L+ + +    + E+ + ++    
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFA 127

Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
            L  L L  N +  +       L+ L  L++ +                          L
Sbjct: 128 GLETLTLARNPLRALPAS-IASLNRLRELSIRAC-----------------------PEL 163

Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
           T       +LP      ++          L+  +LQ L +    I  L     I +   L
Sbjct: 164 T-------ELPE----PLASTDASGEHQGLV--NLQSLRLEWTGIRSLPA--SIANLQNL 208

Query: 607 TYFDASSNKLTELTGNAIPHSVENL 631
                 ++ L+ L       ++ +L
Sbjct: 209 KSLKIRNSPLSAL-----GPAIHHL 228

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRL 863
             + +D   +  +     + +   L+ L L  + +  +   +   L  L  L +     L
Sbjct: 107 QHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPEL 163

Query: 864 TEI--------RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           TE+           E + L NL+ L L++  I  +   +  +L +LK L++ ++ +++ 
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 9e-05
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLN---------SSHVETIHNKTFNGLKELII 855
             L L  N +  +   + I    +L+ L +               T  +    GL  L  
Sbjct: 130 ETLTLARNPLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH-NRITSF 914
           LRL+   +  +       L+NL+ L ++ + +  +       L  L+ L L     + ++
Sbjct: 188 LRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 828 KLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
             QI       ++   +   +      + L L    L +    +  RL +L+ + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAG 115

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
           ++ + + T      L+ L L  N + + 
Sbjct: 116 LMELPD-TMQQFAGLETLTLARNPLRAL 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  132 bits (335), Expect = 4e-34
 Identities = 65/307 (21%), Positives = 126/307 (41%), Gaps = 21/307 (6%)

Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEV 298
                L+   ++    + +T         L+ +T L+     +  I         +L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGL 68

Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
            L++N I  LAP     LT++  L+LS N L     N +  +GL  +  L++   ++  +
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQITDV 122

Query: 359 DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
                  L  LQVL+L+ NQI +I  +  A L+NL  L + N ++  +    L +L+ L+
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
            L  D+N++  I    L +  +L + HL  N+++++   L N  +L  + L +  IT   
Sbjct: 177 TLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQP 233

Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
               N+L       +   + + I+             NL  N    +   ++  N ++  
Sbjct: 234 VFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTF 291

Query: 539 IRLDGNY 545
                 +
Sbjct: 292 KNTTVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  122 bits (307), Expect = 2e-30
 Identities = 58/294 (19%), Positives = 116/294 (39%), Gaps = 28/294 (9%)

Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINL 223
             L +   +    +++          L  ++ L+     ++ +    +          NL
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYL--------NNL 65

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
             L+L +N    L       L+++ EL L GN L  +   A+ GL S+  L+L+   + +
Sbjct: 66  IGLELKDNQITDL--APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD 121

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
           + P       +L+ +YL  N I  ++P     LT L  L + N +++    +    + L 
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS----DLTPLANLS 173

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
           +L  L    NK++ +       L  L  +HL+NNQI  +  +  A+ SNL  + ++N  +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTI 229

Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
                   ++L       +       I    + ++ +    +L  N  + I  V
Sbjct: 230 TNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  110 bits (276), Expect = 2e-26
 Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 39/270 (14%)

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
           I     +  I      +L     ++   + +         +   +      G  +T I  
Sbjct: 3   ITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58

Query: 457 VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
            ++ L++L  L+L DN IT++  L   +L ++  L L+ N + N+S      L  +  L+
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113

Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
           L S +I  V        SNL  + LD N +T+I  L   L NL +L+I            
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIG----------- 159

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
                        Q+S+L     + +  +LT   A  NK+++++  A   ++  + L NN
Sbjct: 160 -----------NAQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205

Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
            IS V P       NL  V L    + N  
Sbjct: 206 QISDVSPLANT--SNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 8e-23
 Identities = 50/305 (16%), Positives = 113/305 (37%), Gaps = 40/305 (13%)

Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLE 170
           L +   ++     + +    +   L  + TL+              ++       L +L 
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTG---------VTTIEGVQYLNNLI 66

Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
            L+L  N I  L       L  ++ L L+ N L NV   + +         +++ LDL++
Sbjct: 67  GLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGL------QSIKTLDLTS 116

Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
                +     + LS LQ LYL  N +T ++   L GL +L  L++    + ++ P    
Sbjct: 117 TQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LA 170

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
               L  +   +N I+ ++P     L  LI + L NN+++    + +  +    L ++ +
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS----DVSPLANTSNLFIVTL 224

Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
               +         +L    V+   +    +         +       ++  L    ++ 
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP-------ATISDNGTYASPNLTWNLTSF 277

Query: 411 LDSLT 415
           +++++
Sbjct: 278 INNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L   +I  V   +  G   LQ+L+L+ + +  I      GL  L  L + + ++++
Sbjct: 110 KTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +       L  L  L    NKI  IS     SL +L  + L +N+I+  +    +S +  
Sbjct: 166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFI 221

Query: 926 ITLTSNP 932
           +TLT+  
Sbjct: 222 VTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             LYLD N+I  +      G   LQ L + ++ V  +       L +L  L+ DDN++++
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           I       L NL E++L+ N+I  +S     + ++L ++ L +  IT+  V++ ++ +  
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 926 ITLTSN 931
             +   
Sbjct: 244 NVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L  N+I  +         K+  L L+ + ++ +      GL+ +  L L   ++T+
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD 121

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +       L NL+ LYL  N+I  IS      LT+L+ L + + +++        S++ +
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 926 ITLTSN 931
           +    N
Sbjct: 178 LKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 13/159 (8%)

Query: 531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
              +N + I    + +TD       L  +  L+     +   +      +L  L++  NQ
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKP 650
           I++L     +++  ++T  + S N L  ++  A   S++ L LT+  I+ V P       
Sbjct: 75  ITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 651 NLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
           NL  + L  N++ N       ISPL    N+    IG  
Sbjct: 130 NLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
                +    S+V      T   L  +  L      +T I G   + L NL  L L+ N+
Sbjct: 19  ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
           I  ++     +LT +  L+L  N + + +       I+++ LTS 
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 29/193 (15%)

Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------LDI 157
           +   L  +K L +   +I +++     GL  L+ L L   N  T+ S ++       L I
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD-LNQITNISPLAGLTNLQYLSI 158

Query: 158 SHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFS 212
            +   +D      L  L +L    N I  +       L +L  ++L  N++S+V+  + +
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANT 216

Query: 213 NYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLT 272
           +        NL ++ L+N +  + P    + L       ++G     +A   +    +  
Sbjct: 217 S--------NLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYA 266

Query: 273 VLNLSVNNLVNIP 285
             NL+ N    I 
Sbjct: 267 SPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L +   ++  +         KL  L  + + +  I       L  LI + L +N++++
Sbjct: 154 QYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +         NL  + L    I         +L    V++       +
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
            L   I +    + +T+        L+ +  L      +  I       L +L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 909 NRITS 913
           N+IT 
Sbjct: 73  NQITD 77

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  125 bits (315), Expect = 8e-32
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 8/209 (3%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
                     +L   S         + L+ + ++    + +  +    +  L ++  L L
Sbjct: 15  DDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLAL 70

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
             N L +I      +  +L  + L  N +  L  G+F+ LT L  L L  N+L    +  
Sbjct: 71  GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPD 126

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
             F  L  L  LN+A+N++  L   +F  L  L  L L  NQ++S+    F  L+ L  L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            +  N+LK +     D LT+L  + L +N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  116 bits (293), Expect = 6e-29
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 9/204 (4%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
                NL   ++ +      N+   + ++   N+ I  +       L  +  L L  N+L
Sbjct: 20  ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
            +          L  L  L +  N++  L + +F  L  L+ L L  NQ++S+    F  
Sbjct: 76  HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           L+NL  L +++N+L+ +     D LT L+ L L  N+L+ + E      T L+D  L  N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191

Query: 450 KLTEIPK-VLRNLHSLKTLDLGDN 472
           +L  +P  V   L SL+ + L DN
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 151 STMSLDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
            T+  ++     T     +EL S++ +  + + I ++       L ++ YL L  NKL +
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL 265
           ++              NL  L L+ N   SLP   F +L+ L+EL L  N L  L D   
Sbjct: 78  ISAL-----KEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
           D L +LT LNL+ N L ++P  +F++  +L E+ L  N +  L  G+F+ LTQL  L L 
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189

Query: 326 NNEL 329
            N+L
Sbjct: 190 QNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 10/198 (5%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
              +L+   +      T   L+++  +I +N+ +K ++   +  L  +  L+L  N+L  
Sbjct: 22  IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
           I   ALK  T+L    L GN+L  +P  V   L +LK L L +N +  + +   + L  L
Sbjct: 78  IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L  N + ++ KGVF+KL+ LT L+L+ N++Q +  G FD  + L  +RL  N L  
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 549 I-GGLFPKLPNL--VWLN 563
           +  G+F +L +L  +WL+
Sbjct: 196 VPDGVFDRLTSLQYIWLH 213

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 6/176 (3%)

Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
              +    +    +   + L ++  +  +N++++ ++   ++   +++   L GNKL +I
Sbjct: 23  KANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI 78

Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI 514
              L+ L +L  L L  N +  + N   + L  L  L L EN + ++  GVF+KL+ LT 
Sbjct: 79  S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
           LNLA N++Q +  G FD  +NL  + L  N L  +  G+F KL  L  L + +N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 21/190 (11%)

Query: 128 SAGSFRGLRKLKTLTLRTH--------NTDWSTMSLDISHN------VFTDELQSLESLD 173
            A +   L  +  +                 +   L +  N          EL +L  L 
Sbjct: 33  DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL-KELTNLTYLI 91

Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
           L+ N + +LP+ +F  L +L  L L +N+L ++    F          NL  L+L++N  
Sbjct: 92  LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------TNLTYLNLAHNQL 145

Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
            SLP   F +L+ L EL L  N L  L +   D L  L  L L  N L ++P  +F++  
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205

Query: 294 DLKEVYLQNN 303
            L+ ++L +N
Sbjct: 206 SLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 66/293 (22%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
                  +L    +T+       L+S+  +   ++ I  +    +  L  +  L L  N 
Sbjct: 18  FAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNK 74

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLP 557
           + +I     ++L+ LT L L  N++Q +  G FD  +NL  + L  N L         LP
Sbjct: 75  LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLP 125

Query: 558 NLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN-YFEIESQLRLTYFDASSNKL 616
           + V           FD      +L +L++  NQ+  L    F  +    LT  D S N+L
Sbjct: 126 DGV-----------FDK---LTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQL 169

Query: 617 TELTGNAIPHSVENLF--LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
                 ++P  V   F  LT                 L  + L  N+LK++         
Sbjct: 170 Q-----SLPEGV---FDKLT----------------QLKDLRLYQNQLKSVPDGVF--DR 203

Query: 675 LPSHKNIPDFYIGENPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
           L S + I   ++ +NP+ C C       +W+  +S    RN    V  D+  C
Sbjct: 204 LTSLQYI---WLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 252

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 30/164 (18%)

Query: 801 IPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860
              +   L L GN++  + +        L  L L  + ++++ N  F+ L  L  L L +
Sbjct: 61  YLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF------ 914
           N+L  +    F++L NL  L L +N++  +    F  LT+L  L L +N++ S       
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178

Query: 915 ---------------------AVWHLSSQIQSITLTSNPWSCDC 937
                                    L+S +Q I L  NPW C C
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCTC 221

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 23/148 (15%)

Query: 786 IDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI--- 842
           I  ST       P     +  +  L    +    +        +  +  N+S ++++   
Sbjct: 3   ITVSTPIKQI-FPDDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGI 59

Query: 843 ------------HNK-----TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
                        NK         L  L  L L  N+L  +    F++L NL+EL L  N
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITS 913
           ++  + +  F  LT+L  L L HN++ S
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQS 147

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 102 SLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNV 161
           SL  G F  L +L  L++   ++ +L  G F  L  L  L L   N   S     +   V
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQS-----LPEGV 176

Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           F D+L  L+ L L  N + ++PD +F  L SL Y+ L  N
Sbjct: 177 F-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  126 bits (319), Expect = 9e-31
 Identities = 92/477 (19%), Positives = 150/477 (31%), Gaps = 89/477 (18%)

Query: 154 SLDISHNVFTDE--------LQSLESLDLSMNSI----WTLPDAIFCPLQSLSYLNLTQN 201
           SLDI     +D         LQ  + + L    +         +      +L+ LNL  N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 202 KLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGNIL 257
           +L +V                ++ L L N           +     L  LQEL+L  N+L
Sbjct: 67  ELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 258 T-----FLADHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSRDLKEVYLQNNSIN-- 306
                  L +  LD    L  L L   +L          +     D KE+ + NN IN  
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 307 ---VLAPGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNK-----MN 356
              VL  G+ +   QL  L L +  +T +         +    L  L +  NK     M 
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245

Query: 357 KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
           +L   +     RL+ L +    I      T     +L                 L +  +
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGI------TAKGCGDL--------------CRVLRAKES 285

Query: 417 LSVLSLDNNELE-----YIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKT 466
           L  LSL  NEL       + E  L+    L+   +     T         VL     L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 467 LDLGDNLITE--INNLS---LNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILN 516
           L + +N + +  +  L          L  L L + ++S+     ++         L  L+
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELD 404

Query: 517 LASNKIQKVEAGTF-----DNNSNLVAIRLDGNYLTDIG-----GLFPKLPNLVWLN 563
           L++N +                  L  + L   Y ++        L    P+L  ++
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  116 bits (294), Expect = 1e-27
 Identities = 84/435 (19%), Positives = 150/435 (34%), Gaps = 85/435 (19%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRL----SRLQELYLQGNILTF-----LADHALDGLNSLT 272
           +++ LD+            ++ L     + Q + L    LT      ++  AL    +L 
Sbjct: 4   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALA 59

Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
            LNL  N L                    +  ++ +  G+     ++  L L N  LT  
Sbjct: 60  ELNLRSNEL-------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 333 WVN--AATFSGLHRLVVLNIAYNK-----MNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
                ++T   L  L  L+++ N      +  L   +     RL+ L LE   + +    
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 386 TFASL----SNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNEL-----EYIE 431
             AS+     +   L +SNN +       L     DS   L  L L++  +       + 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 432 ENALKNSTSLQDFHLNGNKLTE------IPKVLRNLHSLKTLDLGDNLITE--INNLS-- 481
              + +  SL++  L  NKL +       P +L     L+TL + +  IT     +L   
Sbjct: 221 G-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 482 LNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DN 532
           L +   L  L L  N + +     + + + E    L  L + S          F      
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 533 NSNLVAIRLDGNYLTDIG------GLFPKLPNLVWLNISENLLEWFDY-ALIPA-----D 580
           N  L+ +++  N L D G      GL      L  L +++  +      +L         
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 581 LQWLDIHGNQISELG 595
           L+ LD+  N + + G
Sbjct: 400 LRELDLSNNCLGDAG 414

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.7 bits (244), Expect = 3e-21
 Identities = 76/415 (18%), Positives = 137/415 (33%), Gaps = 72/415 (17%)

Query: 292 SRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVL 348
           S D++ + +Q   ++      +  +L Q  V+ L +  LTE      ++       L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 349 NIAYNK-----MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHTLIMS 399
           N+  N+     ++ +   +     ++Q L L+N  +        +S       L  L +S
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 400 NNKL-----KRIESNSLDSLTALSVLSLDNNEL-----EYIEENALKNSTSLQDFHLNGN 449
           +N L     + +    LD    L  L L+   L     E +    L+     ++  ++ N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNN 180

Query: 450 KLTE-----IPKVLRNLH-SLKTLDLGDNLITE--INNLS--LNSLHQLAGLRLTENNIS 499
            + E     + + L++    L+ L L    +T     +L   + S   L  L L  N + 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 500 N-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DNNSNLVAIRLDGNYLTDIG 550
           +     +  G+    S L  L +    I     G          +L  + L GN L D G
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 551 ------GLFPKLPNLVWLNISENLL-EWFDYALIPA-----DLQWLDIHGNQIS-----E 593
                  L      L  L +                      L  L I  N++      E
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 594 LGNYFEIESQLRLTYFDASSNKLTE---------LTGNAIPHSVENLFLTNNLIS 639
           L      +    L     +   +++         L  N   HS+  L L+NN + 
Sbjct: 361 LCQGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLAN---HSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.5 bits (233), Expect = 6e-20
 Identities = 69/406 (16%), Positives = 128/406 (31%), Gaps = 84/406 (20%)

Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
           ++ LS++ C +     G     LR L TL             L +S N+  D        
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-----------ELHLSDNLLGDAGLQLLCE 135

Query: 166 -----LQSLESLDLSMNSIWTLPDAIFCPL----QSLSYLNLTQNKLSNVATFSFSNYDT 216
                   LE L L   S+          +         L ++ N ++            
Sbjct: 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ-GL 194

Query: 217 ARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGNILT-----FLADHALDG 267
                 L  L L +    S          +  + L+EL L  N L       L    L  
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 268 LNSLTVLNLSVNNL----VNIPPELFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQ 318
            + L  L +    +          +      LKE+ L  N +      +L   +     Q
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 319 LIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKM-----NKLDSSIFKDLYRLQV 371
           L  L + +   T    +  ++  +    L+ L I+ N++      +L   + +    L+V
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE--- 428
           L L +  +      + +S S+L              + +L +  +L  L L NN L    
Sbjct: 375 LWLADCDV------SDSSCSSL--------------AATLLANHSLRELDLSNNCLGDAG 414

Query: 429 --YIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTL 467
              + E+  +    L+   L     +E     +  + ++  SL+ +
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 1e-09
 Identities = 52/290 (17%), Positives = 93/290 (32%), Gaps = 51/290 (17%)

Query: 438 STSLQDFHLNGNKLTE--IPKVLRNLHSLKTLDLGDNLITE--INNLS--LNSLHQLAGL 491
           S  +Q   +   +L++    ++L  L   + + L D  +TE    ++S  L     LA L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 492 RLTENNISN-----ISKGVFEKLSVLTILNLASNKIQ----KVEAGTFDNNSNLVAIRLD 542
            L  N + +     + +G+      +  L+L +  +      V + T      L  + L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 543 GNYLTDIG------GLFPKLPNLVWLNISENLL-----EWFDYALIP-ADLQWLDIHGNQ 590
            N L D G      GL      L  L +    L     E     L    D + L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 591 ISE-----LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYT 645
           I+E     L    + +S  +L      S  +T      +        + +          
Sbjct: 182 INEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDL-----CGIVASK--------- 226

Query: 646 FFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDC 695
                +L  + L  N+L ++    L    L     +   +I E       
Sbjct: 227 ----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  124 bits (313), Expect = 1e-29
 Identities = 55/321 (17%), Positives = 96/321 (29%), Gaps = 34/321 (10%)

Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
           S +   N+I       F          L     +   +                 L L+ 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-----QFSELQLNR 68

Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
            +  SLP        ++  L +  N L  L     +   SL  L+   N L  +P    +
Sbjct: 69  LNLSSLPDNLP---PQITVLEITQNALISL----PELPASLEYLDACDNRLSTLPELPAS 121

Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
               LK + + NN + +L          L  ++  NN+LT              L VL++
Sbjct: 122 ----LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTM------LPELPTSLEVLSV 167

Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESI---HRNTFASLSNLHTLIMSNNKLKRIE 407
             N++  L          L+ L +  N +ES+         S           N++  I 
Sbjct: 168 RNNQLTFLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI- 222

Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTL 467
             ++ SL     + L++N L      +L   T+  D+H      +        LH     
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 468 DLGDNLITEINNLSLNSLHQL 488
            +         +      H  
Sbjct: 283 AVTAWFPENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  124 bits (313), Expect = 1e-29
 Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 35/275 (12%)

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQG----NILTFLADHALDGLNSLTVLNLSVNNL 281
            +   N+     A+ FS   + ++  L G      ++ L +  +   N  + L L+  NL
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---NQFSELQLNRLNL 71

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
            ++P  L  Q   +  + +  N++  L          L  LD  +N L+           
Sbjct: 72  SSLPDNLPPQ---ITVLEITQNALISLPELP----ASLEYLDACDNRLST------LPEL 118

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
              L  L++  N++  L          L+ ++ +NNQ+  +        ++L  L + NN
Sbjct: 119 PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTML----PELPTSLEVLSVRNN 170

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEE---NALKNSTSLQDFHLNGNKLTEIPKVL 458
           +L  +     +   +L  L +  N LE +         +  +   F    N++T IP+ +
Sbjct: 171 QLTFLP----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
            +L    T+ L DN ++     SL+          
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  121 bits (304), Expect = 2e-28
 Identities = 71/408 (17%), Positives = 127/408 (31%), Gaps = 49/408 (12%)

Query: 151 STMSLDISHNV-------FTDELQSLESLDLSMNSIWTLPDAIF-CPLQSLSYLNLTQNK 202
            ++S +  +N        +       E   L   +       +  C +   S L L +  
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
           LS++                + VL+++ N+  SLP       + L+ L    N L+ L +
Sbjct: 71  LSSLPDNLPPQ---------ITVLEITQNALISLPEL----PASLEYLDACDNRLSTLPE 117

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
                  SL  L++  N L  +P         L+ +   NN + +L      + T L VL
Sbjct: 118 L----PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTMLPE----LPTSLEVL 165

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD---LYRLQVLHLENNQI 379
            + NN+LT              L  L+++ N +  L +   ++              N+I
Sbjct: 166 SVRNNQLTF------LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
             I      SL    T+I+ +N L      SL   TA              +        
Sbjct: 220 THI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
            L D         +   V +  H+ +  +  +     ++ LS                ++
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD--TVSARNTSGFREQVA 336

Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
                  EKLS    L   S  +      + ++   L    L    L 
Sbjct: 337 A----WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (269), Expect = 4e-24
 Identities = 55/362 (15%), Positives = 115/362 (31%), Gaps = 77/362 (21%)

Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV-LTQLIVLDLSNNELTEE 332
            N   N +     + F+     ++  L   + N     +    + Q   L L+   L+  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS- 73

Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSN 392
                                    L  ++     ++ VL +  N + S+        ++
Sbjct: 74  -------------------------LPDNLPP---QITVLEITQNALISLP----ELPAS 101

Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
           L  L   +N+L  +     +   +L  L +DNN+L  + E        L+  + + N+LT
Sbjct: 102 LEYLDACDNRLSTL----PELPASLKHLDVDNNQLTMLPEL----PALLEYINADNNQLT 153

Query: 453 EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVL 512
            +P++  +L   + L + +N +T +                             E    L
Sbjct: 154 MLPELPTSL---EVLSVRNNQLTFL----------------------------PELPESL 182

Query: 513 TILNLASNKIQKVEAGTFDNNS---NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
             L++++N ++ + A    N+      +  R   N +T I      L     + + +N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 570 EWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE 629
                  +       D HG +I         ++ L     DA +    E   + +     
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIY-FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

Query: 630 NL 631
             
Sbjct: 302 AF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (266), Expect = 1e-23
 Identities = 45/307 (14%), Positives = 97/307 (31%), Gaps = 35/307 (11%)

Query: 374 LENNQIESIHRNTFASLSNLHTLIMS----NNKLKRIESNSLDSLTALSVLSLDNNELEY 429
              N I   + + F++        +     N  +  ++   ++  +    L L+   L  
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNLSS 73

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
           + +N       +    +  N L  +P++  +L   + LD  DN ++ +          L 
Sbjct: 74  LPDNLPPQ---ITVLEITQNALISLPELPASL---EYLDACDNRLSTL----PELPASLK 123

Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
            L +  N ++ +     E  ++L  +N  +N++  +        ++L  + +  N LT  
Sbjct: 124 HLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPELP----TSLEVLSVRNNQLTF- 174

Query: 550 GGLFPKLPNLVWLNISENLLEWFDYAL-----IPADLQWLDIHGNQISELGNYFEIESQL 604
             L     +L  L++S NLLE                 +     N+I+ +     I S  
Sbjct: 175 --LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE--NILSLD 230

Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
                    N L+     ++             I            +    D V      
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

Query: 665 INQTALR 671
             Q+ + 
Sbjct: 291 NKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 2e-13
 Identities = 43/295 (14%), Positives = 88/295 (29%), Gaps = 31/295 (10%)

Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
            ++  +N  T   +   SLE L +  N +  LP+      +SL  L+++ N L    +  
Sbjct: 144 YINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLE---SLP 196

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
                               N    +P E    L     + L+ N L+     +L    +
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
               +           +     R L +                + ++Q+           
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW-----FPENKQSDVSQIW-------HAF 303

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY--------RLQVLHLENNQIESI 382
           E   +A TFS     +   ++    +     +   L         R Q   +  +  ES 
Sbjct: 304 EHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESC 363

Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN 437
                 + +NL   ++ +   + +  N   +L +L         LE I  + ++ 
Sbjct: 364 EDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRT 418

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 7e-06
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
            LP  +P   T L +  N +  +          L+ L    + + T+          L  
Sbjct: 73  SLPDNLPPQITVLEITQNALISL--PELPA--SLEYLDACDNRLSTLPEL----PASLKH 124

Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           L +D+N+LT +     E    L  +    N++  +        T L+VL + +N++T  
Sbjct: 125 LDVDNNQLTMLP----ELPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL 175

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  116 bits (292), Expect = 6e-29
 Identities = 39/194 (20%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
                I  +       L+N     +    +  + S     L+ +   + DN+ ++ +   
Sbjct: 4   QRPTPINQV--FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-- 57

Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
            ++  T+L++ HL+ N+++++   L++L  L+ L +  N +  +N +    L +   L L
Sbjct: 58  GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFL 113

Query: 494 TENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLF 553
             N + +        L  L IL++ +NK++ +        S L  + L GN +T+ GGL 
Sbjct: 114 DNNELRDTD--SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT 169

Query: 554 PKLPNLVWLNISEN 567
            +L  + W++++  
Sbjct: 170 -RLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  107 bits (270), Expect = 5e-26
 Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 20/240 (8%)

Query: 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
             GL +    NL   ++ ++      +   ++     N++I  LA       T L  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70

Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR 384
           S+N+++    + +    L +L  L++  N++  L+         L  L L+NN++     
Sbjct: 71  SHNQIS----DLSPLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELRDT-- 121

Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
           ++   L NL  L + NNKLK I    L  L+ L VL L  NE+       L     +   
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 445 HLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
            L G K    P K    L+   T+   D        +S           +         +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG--GSYVDGCVLWELPVYTDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 25/243 (10%)

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
           L +    NL +  ++++   S            ++  +  N++  SL   G    + L+E
Sbjct: 18  LANAVKQNLGKQSVTDLV--SQKELS------GVQNFNGDNSNIQSL--AGMQFFTNLKE 67

Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
           L+L  N ++ L+   L  L  L  L+++ N L N+       S  L  ++L NN +    
Sbjct: 68  LHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELRDTD 122

Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
                 L  L +L + NN+L     +      L +L VL++  N++          L ++
Sbjct: 123 S--LIHLKNLEILSIRNNKLK----SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             + L   +  +        L   +T+   + +   I    + +  +     +      Y
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPVY 232

Query: 430 IEE 432
            +E
Sbjct: 233 TDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 42/250 (16%)

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
                + ++      L +    +LG   +T++ +     L  +       +NI +++   
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLA--G 58

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
            +  + L  L+L+ N+I  +      + + L  + ++ N L ++ G+      L  L + 
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLD 114

Query: 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
                                  N++ +  +   +     L      +NKL  +      
Sbjct: 115 ----------------------NNELRDTDS---LIHLKNLEILSIRNNKLKSIVMLGFL 149

Query: 626 HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI---NQTALRISPL---PSHK 679
             +E L L  N I+     T      +  +DL G +  N     Q  L I+     P  +
Sbjct: 150 SKLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

Query: 680 NIPDFYIGEN 689
            I  +YI   
Sbjct: 208 WISPYYISNG 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 40/241 (16%), Positives = 83/241 (34%), Gaps = 30/241 (12%)

Query: 153 MSLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
           +  ++     TD     EL  +++ +   ++I +L         +L  L+L+ N++S+++
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLS 79

Query: 208 TFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG 267
                          L  L ++ N   +L   G      L  L+L  N L      +L  
Sbjct: 80  PLKDL--------TKLEELSVNRNRLKNL--NGIPSAC-LSRLFLDNNELRDT--DSLIH 126

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           L +L +L++  N L +I          L+ + L  N I          L ++  +DL+  
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIF-KDLYRLQVLHLENNQIESIHRNT 386
           +   E V          L + N   +   +  S  +  +        +           +
Sbjct: 183 KCVNEPVKY-----QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237

Query: 387 F 387
           +
Sbjct: 238 Y 238

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 47/251 (18%)

Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-- 164
           S + L  +++ + +   I +L+     G++    L             L +SHN  +D  
Sbjct: 36  SQKELSGVQNFNGDNSNIQSLA-----GMQFFTNLK-----------ELHLSHNQISDLS 79

Query: 165 ---ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
              +L  LE L ++ N +  L      P   LS L L  N+L +  +             
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHLK-------- 128

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           NL +L + NN   S+       LS+L+ L L GN +T      L  L  +  ++L+    
Sbjct: 129 NLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

Query: 282 VNIPPELF------NQSRDLKEVYLQNNSI---NVLAPG--IFNVLTQLIVLDLSNNELT 330
           VN P +        N  +D    ++    I        G  ++ +      +    +E  
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYI 244

Query: 331 EEWVNAATFSG 341
                 A F G
Sbjct: 245 NVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
                I +V        +N V   L    +TD+     +L  +   N   + ++      
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQ 60

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
              +L+ L +  NQIS+L     ++   +L     + N+L  L G      +  LFL NN
Sbjct: 61  FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNN 116

Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
            +            NL  + +  N+LK+       I  L     +    +  N 
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLKS-------IVMLGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            EL+L  N+I  +         KL+ L +N + ++ ++      L  L    LD+N L +
Sbjct: 66  KELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD 120

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
                   L+NL  L ++ NK+  I       L+ L+VL L  N IT+        ++  
Sbjct: 121 TDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176

Query: 926 ITLTSNP 932
           I LT   
Sbjct: 177 IDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            +  L    +  + S   +    +Q    ++S+++++          L  L L  N++++
Sbjct: 22  VKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISD 77

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
           +     + L  L EL +  N++  ++    +    L  L LD+N +           ++ 
Sbjct: 78  LSP--LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDSLIHLKNLEI 132

Query: 926 ITLTSN 931
           +++ +N
Sbjct: 133 LSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
           GL   +   L    +T++     + L  ++      + I  ++       T+LK L L H
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 909 NRITS 913
           N+I+ 
Sbjct: 73  NQISD 77

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
           + L+LD N +      S I  K L+IL + ++ +++I       L +L +L L  N +T 
Sbjct: 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN 164

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHL-KVLQLDHNRIT 912
             G    RL+ +  + L   K +    +    L     V   D   I+
Sbjct: 165 TGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  110 bits (276), Expect = 6e-27
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 26/178 (14%)

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
             LDL +    +L    F  L++L  L L  N L  L+    D L  L  L L+ N L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
           +P  +F+    L ++YL  N +  L  G+F+ LT+L  L L+ N+L              
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------ 145

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
                         + +  F  L  LQ L L  NQ++S+    F  L  L T+ +  N
Sbjct: 146 --------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  108 bits (272), Expect = 2e-26
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 25/176 (14%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           + L L++  + ++   TF  L+ L  L +  N+L+ + +   D LT L  L L NN+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
           +      + T L   +L GN+L  +P  V   L  LK L L  N              QL
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--------------QL 143

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
                      +I  G F+KL+ L  L+L++N++Q V  G FD    L  I L GN
Sbjct: 144 ----------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  108 bits (272), Expect = 2e-26
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 3/152 (1%)

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           LDL +  L    ++ ATF GL +L  LN+ YN++  L + +F DL  L  L L NNQ+ S
Sbjct: 40  LDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
           +    F  L+ L  L +  N+LK + S   D LT L  L L+ N+L+ I   A    T+L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 442 QDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
           Q   L+ N+L  +P      L  L+T+ L  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  105 bits (263), Expect = 4e-25
 Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 35/199 (17%)

Query: 768 TCP--NNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIG 825
           TC     CTC    +     +DC     D+ +P  IP D  +L L    +  +   +F G
Sbjct: 3   TCETVTGCTC----NEGKKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRG 57

Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
             KL  L L+ + ++T+    F+ L EL  L L +N+L  +    F+ L  L +LYL  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF---------------------------AVWH 918
           ++  + +  F  LT LK L+L+ N++ S                            A   
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 919 LSSQIQSITLTSNPWSCDC 937
           L   +Q+ITL  N + C  
Sbjct: 178 LGK-LQTITLFGNQFDCSR 195

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 94.8 bits (236), Expect = 1e-21
 Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLS 229
           E LDL    + TL DA F  L  L++LNL  N+L                          
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72

Query: 230 NNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF 289
                +L A  F  L+ L  L L  N L  L     D L  L  L L  N L ++P  +F
Sbjct: 73  -----TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127

Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
           ++   LKE+ L  N +  +  G F+ LT L  L LS N+L 
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 37/191 (19%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           D + L ++   +  LS  +FRGL KL  L L        T    +S  VF D+L  L +L
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNL--DYNQLQT----LSAGVF-DDLTELGTL 88

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
            L+ N + +LP  +F  L  L  L L  N+L                             
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK---------------------------- 120

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
             SLP+  F RL++L+EL L  N L  +   A D L +L  L+LS N L ++P   F++ 
Sbjct: 121 --SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

Query: 293 RDLKEVYLQNN 303
             L+ + L  N
Sbjct: 179 GKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 59/239 (24%), Positives = 87/239 (36%), Gaps = 56/239 (23%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           L L    ++ +S   F  L+ LT LNL  N++Q + AG FD+ + L  + L  N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA--- 96

Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
                LP  V           FD+      L  L + GNQ+  L +            FD
Sbjct: 97  ----SLPLGV-----------FDH---LTQLDKLYLGGNQLKSLPS----------GVFD 128

Query: 611 ASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
               +LT+L           L L  N +  +    F    NL  + L  N+L+++   A 
Sbjct: 129 ----RLTKLK---------ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

Query: 671 RISPLPSHKNIPDFYIGENPFQCDCN-----MQWLQSYS--VNKERNKPNLVDLDTVTC 722
               L   + I    +  N F C         QW++  S  V     +      D VTC
Sbjct: 176 --DRLGKLQTI---TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTC 229

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 13/135 (9%)

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
           + LDL    +  +++ +   L +L  L L  N +  +S GVF+ L+ L  L LA+N++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPA---- 579
           +  G FD+ + L  + L GN L  +  G+F +L  L  L ++ N L+      IPA    
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-----SIPAGAFD 152

Query: 580 ---DLQWLDIHGNQI 591
              +LQ L +  NQ+
Sbjct: 153 KLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 37/155 (23%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            +LS G F  L +L  L +   ++ +L  G F                            
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVF---------------------------- 103

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
              D L  L+ L L  N + +LP  +F  L  L  L L  N+L ++   +F         
Sbjct: 104 ---DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------ 154

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
            NL+ L LS N   S+P   F RL +LQ + L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  102 bits (256), Expect = 1e-24
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          ++C + G  + +P  IP   T L L+ N +  + +  F     
Sbjct: 1   CPSRCSC------SGTTVECYSQGRTS-VPTGIPAQTTYLDLETNSLKSLPNGVFDELTS 53

Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L  L+L  + ++++ N  FN L  L  L L  N+L  +    F++L  L+EL L  N++ 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
            + +  F  LT LK L+L  N++ S        L+S +Q I L  NPW C C
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCTC 164

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 29/185 (15%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           +RC  +   ++  +    S+P    ++      L L+ N L  L +   D L SLT L L
Sbjct: 3   SRCSCSGTTVECYSQGRTSVPTGIPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLYL 59

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
             N L ++P  +FN+   L  + L  N +  L  G+F+ LTQL  L L+ N+L       
Sbjct: 60  GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS----- 114

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
                                L   +F  L +L+ L L  NQ++S+    F  L++L  +
Sbjct: 115 ---------------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153

Query: 397 IMSNN 401
            + +N
Sbjct: 154 WLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 89.0 bits (221), Expect = 4e-20
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
             V   +     +  GI     Q   LDL  N L         F  L  L  L +  NK+
Sbjct: 10  TTVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGV--FDELTSLTQLYLGGNKL 64

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L + +F  L  L  L+L  NQ++S+    F  L+ L  L ++ N+L+ +     D LT
Sbjct: 65  QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124

Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
            L  L L  N+L+ + +      TSLQ   L+ N
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 88.2 bits (219), Expect = 9e-20
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L++  N +  L + +F +L  L  L+L  N+++S+    F  L++L  L +S N+L+ +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
            +   D LT L  L+L+ N+L+ + +      T L+D  L  N+L  +P  V   L SL+
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 466 TLDLGDN 472
            + L DN
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEI 477
            L L+ N L+ +        TSL   +L GNKL  +P  V   L SL  L+L  N +  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537
            N   + L QL  L L  N + ++  GVF+KL+ L  L L  N+++ V  G FD  ++L 
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 538 AIRLDGN 544
            I L  N
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
                  L  N L  +P  V   L SL  L LG N +  + N   N L  L  L L+ N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
           + ++  GVF+KL+ L  L L +N++Q +  G FD  + L  +RL  N L  +  G+F +L
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 557 PNL--VWLN 563
            +L  +WL+
Sbjct: 148 TSLQYIWLH 156

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
             LDL  N +  + N   + L  L  L L  N + ++  GVF KL+ LT LNL++N++Q 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
           +  G FD  + L  + L+ N L  +  G+F KL  L  L + +N L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
               L +E   + +L  G F  L  L  L L        +    + + VF ++L SL  L
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQS----LPNGVF-NKLTSLTYL 81

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
           +LS N + +LP+ +F  L  L  L L  N+L ++    F           L+ L L  N 
Sbjct: 82  NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL------TQLKDLRLYQNQ 135

Query: 233 FDSLPAEGFSRLSRLQELYLQGN 255
             S+P   F RL+ LQ ++L  N
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 102 SLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNV 161
           SL  G F  L  L  L++   ++ +L  G F  L +LK L L T N   S     +   V
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQS-----LPDGV 119

Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           F D+L  L+ L L  N + ++PD +F  L SL Y+ L  N
Sbjct: 120 F-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 28/172 (16%)

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFLT 634
           IPA   +LD+  N +  L N    +    LT      NKL  L             L L+
Sbjct: 26  IPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLK-----------NINQTALRISPLPSH----- 678
            N +  +    F     L  + L  N+L+            +    L  + L S      
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

Query: 679 ---KNIPDFYIGENPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
               ++   ++ +NP+ C C       +W+  +S    RN    V  D+  C
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 195

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  101 bits (254), Expect = 1e-24
 Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 44/206 (21%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C      E   +DC+  G   ++P  IP+  TEL L+ N +  + S        
Sbjct: 2   CPAMCHC------EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDG------ 48

Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
                             F  L  L+ L L  N+LT I    FE   +++EL L  NKI 
Sbjct: 49  -----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 889 YISNRTFLSLTHLKVLQLDHNRITS-----FAVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
            ISN+ FL L  LK L L  N+I+      F   HL+S + S+ L SNP++C+C      
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNS-LTSLNLASNPFNCNCHL---- 144

Query: 944 RDYLQR-SRSSVHDISQIRCMTGSEV 968
             +     R    +    RC   S+V
Sbjct: 145 -AWFAEWLRKKSLNGGAARCGAPSKV 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 82.0 bits (203), Expect = 9e-18
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 224 RVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV 282
             L L++N    + ++G F RL  L +L L+ N LT +  +A +G + +  L L  N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            I  ++F     LK + L +N I+ + PG F  L  L  L+L++N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 347 VLNIAYNKMNKLDSS-IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
            L +  N++ ++ S  +F  L  L  L L+ NQ+  I  N F   S++  L +  NK+K 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           I +     L  L  L+L +N++  +   + ++  SL   +L  N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 2/108 (1%)

Query: 439 TSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
               +  LN N+L  I    +   L  L  L+L  N +T I   +      +  L+L EN
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
            I  IS  +F  L  L  LNL  N+I  V  G+F++ ++L ++ L  N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
           +IP           E+ L +N +  ++  G+F  L  L+ L+L  N+LT           
Sbjct: 26  DIPL-------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT----------- 67

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
                           ++ + F+    +Q L L  N+I+ I    F  L  L TL + +N
Sbjct: 68  ---------------GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 402 KLKRIESNSLDSLTALSVLSLDNN 425
           ++  +   S + L +L+ L+L +N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 370 QVLHLENNQIESIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
             L L +N++  I  +  F  L +L  L +  N+L  IE N+ +  + +  L L  N+++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
            I          L+  +L  N+++ +      +L+SL +L+L  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 195 YLNLTQNKLSNV-ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
            L L  N+L  + +   F          +L  L+L  N    +    F   S +QEL L 
Sbjct: 33  ELLLNDNELGRISSDGLFGRL------PHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86

Query: 254 GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
            N +  +++    GL+ L  LNL  N +  + P  F     L  + L +N
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 465 KTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
             L L DN +  I ++     L  L  L L  N ++ I    FE  S +  L L  NKI+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
           ++    F     L  + L  N ++ +  G F  L +L  LN++ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 38/137 (27%)

Query: 151 STMSLDISHNVFT--------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
            T  L ++ N             L  L  L+L  N +  +    F     +  L L +NK
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
           +                                +  + F  L +L+ L L  N ++ +  
Sbjct: 90  IK------------------------------EISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 263 HALDGLNSLTVLNLSVN 279
            + + LNSLT LNL+ N
Sbjct: 120 GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLT 634
           IP     L ++ N++  + +         L   +   N+LT +  NA      ++ L L 
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86

Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD 694
            N I ++    F     L  ++L  N++  +   +     L S  ++    +  NPF C+
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSL---NLASNPFNCN 141

Query: 695 CNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEY--ETNC 751
           C++ W   +   K       ++     C          + +K+   ++F C       C
Sbjct: 142 CHLAWFAEWLRKKS------LNGGAARCG--APSKVRDVQIKDLPHSEFKCSSENSEGC 192

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 101 SSLSP-GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
             +S  G F  L  L  L ++  ++  +   +F G   ++ L L  +         +IS+
Sbjct: 42  GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK------EISN 95

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK---------LSNVATFS 210
            +F   L  L++L+L  N I  +    F  L SL+ LNL  N           +      
Sbjct: 96  KMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154

Query: 211 FSNYDTARCGINLRVLDLSNNS 232
             N   ARCG   +V D+    
Sbjct: 155 SLNGGAARCGAPSKVRDVQIKD 176

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score =  101 bits (253), Expect = 2e-24
 Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
            CP  CTC         V+ CS  G    LP  IP D TELYLDGN+             
Sbjct: 3   RCPTECTC------LDTVVRCSNKGLK-VLPKGIPRDVTELYLDGNQF------------ 43

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
                        T+  K  +  K L ++ L +NR++ +    F  +  L  L L YN++
Sbjct: 44  -------------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCD 938
             I  RTF  L  L++L L  N I+     A   LS+ +  + + +NP  CDC+
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-LSHLAIGANPLYCDCN 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 34/106 (32%), Positives = 57/106 (53%)

Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
             + + +L+GN+ T +PK L N   L  +DL +N I+ ++N S +++ QL  L L+ N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             I    F+ L  L +L+L  N I  V  G F++ S L  + +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L +  N+   L      +   L ++ L NN+I ++   +F++++ L TLI+S N+L+ I
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
              + D L +L +LSL  N++  + E A  + ++L    +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             L+L+ NQ   +     ++  +L  + +SNN++  + + S  ++T L  L L  N L  
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
           I         SL+   L+GN ++ +P+    +L +L  L +G N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
             L L  N F  +P E  S    L  + L  N ++ L++ +   +  L  L LS N L  
Sbjct: 34  TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           IPP  F+  + L+ + L  N I+V+  G FN L+ L  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
            L L  N+ T         S    L +++++ N+++ L +  F ++ +L  L L  N++ 
Sbjct: 35  ELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
            I   TF  L +L  L +  N +  +   + + L+ALS L++  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
           L L  N+ + V     SNY       +L ++DLSNN   +L  + FS +++L  L L  N
Sbjct: 36  LYLDGNQFTLVPK-ELSNY------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88

Query: 256 ILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
            L  +     DGL SL +L+L  N++  +P   FN    L  + +  N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 27/130 (20%)

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
           T L L  N    +P E  +  + L  + L NN I+ L+   F+ +TQL+ L LS N L  
Sbjct: 34  TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
                                     +    F  L  L++L L  N I  +    F  LS
Sbjct: 93  --------------------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126

Query: 392 NLHTLIMSNN 401
            L  L +  N
Sbjct: 127 ALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
            ELYL GN  T L    L     LT+++LS N +  +  + F+    L  + L  N +  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 308 LAPGIFNVLTQLIVLDLSNNEL 329
           + P  F+ L  L +L L  N++
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFLT 634
           IP D+  L + GNQ + +       +   LT  D S+N+++ L+  +  +  +   L L+
Sbjct: 29  IPRDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD 694
            N +  + P TF    +L  + L GN +  + + A   + L +  ++    IG NP  CD
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHL---AIGANPLYCD 141

Query: 695 CNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC 745
           CNMQWL  +  +         +     C      A+  +L     S +F C
Sbjct: 142 CNMQWLSDWVKS------EYKEPGIARCAGPGEMADKLLL--TTPSKKFTC 184

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 151 STMSLDISHNVFT------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS 204
               L +  N FT         + L  +DLS N I TL +  F  +  L  L L+ N+L 
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 205 NVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
            +   +F          +LR+L L  N    +P   F+ LS L  L +  N
Sbjct: 92  CIPPRTFDGL------KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
           L L  N  + +          LT+++L++N+I  +   +F N + L+ + L  N L  I 
Sbjct: 36  LYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 550 GGLFPKLPNLVWLNISENLL 569
              F  L +L  L++  N +
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
           Q +L P        L  + +   +I  LS  SF  + +L TL L ++N         I  
Sbjct: 42  QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRC-----IPP 95

Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
             F D L+SL  L L  N I  +P+  F  L +LS+L +  N
Sbjct: 96  RTF-DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  100 bits (251), Expect = 4e-24
 Identities = 28/186 (15%), Positives = 66/186 (35%), Gaps = 11/186 (5%)

Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
               +   L  +          T + ++ L  + +A   +  L     +  + ++ L + 
Sbjct: 22  FKAYLNGLLGQSSTAN-----ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
           N    +   N  + LSNL  L +    +   +  +L  LT+L++L + ++  +      +
Sbjct: 75  NIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE 495
                +    L+ N        L+ L  LK+L++  + + +   +      +L  L    
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 496 NNISNI 501
             I   
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.6 bits (241), Expect = 9e-23
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 10/177 (5%)

Query: 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
               +   +     +  L  + L N  +  +         N+  L ++N          +
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--I 84

Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLG 470
             L+ L  L +   ++   +   L   TSL    ++ +   +     +  L  + ++DL 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 471 DN-LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
            N  IT+I  L   +L +L  L +  + + +      E    L  L   S  I   +
Sbjct: 145 YNGAITDIMPLK--TLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 25/178 (14%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
           S     +          + +   + +L+ ++L N  +  +    ++ + +++D  +N   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIH 77

Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
            T     +  L +L+ L +    +T     +L+ L  L  L ++ +   +        L 
Sbjct: 78  ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 511 VLTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
            +  ++L+ N  I  +          L ++ +  + + D  G+    P L  L     
Sbjct: 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
            +  A     L  +    I E  + + T +    L    +T++   +   H++K L + +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL-TGIEYAHNIKDLTINN 75

Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFD 531
              T  N +S   L  L  LR+   ++++        L+ LT+L+++ +          +
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 532 NNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA--DLQWLDIHG 588
               + +I L  N  +TDI  L   LP L  LNI  + +   DY  I     L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVH--DYRGIEDFPKLNQLYAFS 190

Query: 589 NQISEL 594
             I   
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 13/168 (7%)

Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
           ++ SL  + L+  ++  L         ++  L +     +N    S           NL 
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGL--------SNLE 91

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
            L +      S      S L+ L  L +  +         ++ L  +  ++LS N  +  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
              L      LK + +Q + ++           +L  L   +  +  +
Sbjct: 152 IMPLKTLPE-LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 28/243 (11%), Positives = 73/243 (30%), Gaps = 58/243 (23%)

Query: 424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN 483
           + +   I ++  K   +     L  +    I +    ++SL  + L +  +T++  +   
Sbjct: 11  SQDNVNIPDSTFKAYLNG---LLGQSSTANITEA--QMNSLTYITLANINVTDLTGIE-- 63

Query: 484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
             H +  L +   + +N +      LS L  L +    +   +       ++L  + +  
Sbjct: 64  YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 544 NYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
           +   D        LP +  +++S N                       I+++        
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN---------------------GAITDIMP------ 154

Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
                        L  L        +++L +  + +   +    F  P L ++      +
Sbjct: 155 -------------LKTLP------ELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQTI 193

Query: 663 KNI 665
              
Sbjct: 194 GGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN-RLT 864
             L + G  +      +  G   L +L ++ S  +       N L ++  + L  N  +T
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
           +I     + L  L+ L +Q++ +             L  L      I  
Sbjct: 151 DIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            +L ++             G   L+ L +    V +      +GL  L +L +  +   +
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLS-LTHLKVLQLDHNRITSF-AVWHLSSQI 923
               +   L  +  + L YN    I++   L  L  LK L +  + +  +  +     ++
Sbjct: 127 SILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF-PKL 183

Query: 924 QSITLTSNP 932
             +   S  
Sbjct: 184 NQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
           T + L    +  +   + I     ++ L +N+ H         +GL  L  LR+    +T
Sbjct: 47  TYITLANINVTDL---TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN-RITS 913
             +      L +L  L + ++           +L  +  + L +N  IT 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           ++ +P     L +L+ L +    + +    +  GL  L  L +            D S  
Sbjct: 79  TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-------HDDSIL 129

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
              + L  + S+DLS N   T    +   L  L  LN+  + + +               
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFP------- 181

Query: 221 INLRVLDLSNNSFDSL 236
             L  L   + +    
Sbjct: 182 -KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
           L ++ +    +++L     IE    +     ++   T     +   ++E L +    ++ 
Sbjct: 46  LTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102

Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
            +        +LT +D+  +   +       ++ + +   +    +  N 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSI-----LTKINTLPKVNSIDLSYNG 147

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  102 bits (256), Expect = 1e-23
 Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 40/317 (12%)

Query: 91  IECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDW 150
             C      +      S + L+   D   +  +  ++     + L  LK LT+R      
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII----KSLS-LKRLTVRAARIPS 82

Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
             +   +     +  LQ L   +L +      P  +      L+ LNL     +    + 
Sbjct: 83  RILFGALRVLGIS-GLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATRDAWL 140

Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT----FLADHALD 266
                       L+VL ++     +   E       L  L L  N        ++     
Sbjct: 141 AELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
              +L VL L    +                      + + +   +     QL  LDLS+
Sbjct: 199 KFPTLQVLALRNAGM---------------------ETPSGVCSALAAARVQLQGLDLSH 237

Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
           N L +    A +     +L  LN+++  + ++   +     +L VL L  N+++      
Sbjct: 238 NSLRDA-AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPS-- 291

Query: 387 FASLSNLHTLIMSNNKL 403
              L  +  L +  N  
Sbjct: 292 PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 99.6 bits (248), Expect = 9e-23
 Identities = 62/310 (20%), Positives = 105/310 (33%), Gaps = 38/310 (12%)

Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
           N +      ++   +SL YL    +  +++  F+    D  +  ++L+ L +      S 
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFT----DIIKS-LSLKRLTVRAARIPSR 83

Query: 237 PAEGFSRL---SRLQELYLQ-----GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPEL 288
              G  R+   S LQEL L+     G     L +     LN L + N+S         EL
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 289 FNQS-RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
                  LK + +        +     V   L  LDLS+N    E               
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-------------- 189

Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI- 406
                  ++ L    F  L  L + +        +     A+   L  L +S+N L+   
Sbjct: 190 -----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
            + S D  + L+ L+L    L+ + +        L    L+ N+L   P     L  +  
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDE-LPQVGN 300

Query: 467 LDLGDNLITE 476
           L L  N   +
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 4e-15
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 35/290 (12%)

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL---EYIEENALKNSTSLQDFH 445
             S  + L   + +    +   +    +L  L++    +          +   + LQ+  
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 446 LNGNKLT---EIPKVLRNLHSLKTLDLGDNLIT----EINNLSLNSLHQLAGLRLTENNI 498
           L   ++T     P +      L  L+L +         +  L       L  L + + + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 499 SNISKGVFEKLSVLTILNLASNKIQK----VEAGTFDNNSNLVAIRLDGNYLTDIGGLFP 554
            N S         L+ L+L+ N        + A        L  + L    +    G+  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 555 KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
            L                        LQ LD+  N + +       +   +L   + S  
Sbjct: 222 ALAAA------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
            L ++    +P  +  L L+ N + +         P +  + L GN   +
Sbjct: 264 GLKQVPKG-LPAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 33/277 (11%)

Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
           D  +A + L   + EL Y    +L+      D   +  + T+I K L     LK L +  
Sbjct: 23  DWSSAFNCLGAADVEL-YGGGRSLEYLLKRVDTEADLGQFTDIIKSLS----LKRLTVRA 77

Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNIS-------KGVFEKLSVLTILNLASNKIQK 524
             I     +   +L  L    L E  + N+          +      L ILNL +     
Sbjct: 78  ARIPS--RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 525 VEAGTFD----NNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL---EWFDYAL 576
            +A   +        L  + +   +  +         P L  L++S+N          AL
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 577 IPAD---LQWLDIHGNQISELGNYFE--IESQLRLTYFDASSNKLTEL---TGNAIPHSV 628
            P     LQ L +    +            ++++L   D S N L +         P  +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
            +L L+   + +V          L+ +DL  NRL   
Sbjct: 256 NSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 9/145 (6%)

Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL-------NSSHVETIHNKTF 847
            +L   +      L +                  L  L L           +  +    F
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR-TFLSLTHLKVLQL 906
             L+ L +        + +          L+ L L +N +   +   +    + L  L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
               +       L +++  + L+ N
Sbjct: 261 SFTGLKQV-PKGLPAKLSVLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 13/124 (10%)

Query: 795 NQLPPRIPMDATELYLDGNR---IPVVGSHSFIGRKKLQILFLNSSH---VETIHNKTFN 848
           + L P        L L          V S     R +LQ L L  SH    +     + +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL--SHNSLRDAAGAPSCD 250

Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
              +L  L L    L ++          L  L L YN++    +     L  +  L L  
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKG 305

Query: 909 NRIT 912
           N   
Sbjct: 306 NPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 806 TELYLDGNRI----PVVGSHSFIGRKKLQILFLNSSHVETI---HNKTFNGLKELIILRL 858
           + L L  N       ++ +   +    LQ+L L ++ +ET     +       +L  L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 859 DDNRLTEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
             N L +  G    +    L  L L +  +  +          L VL L +NR+      
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSP 292

Query: 918 HLSSQIQSITLTSNP 932
               Q+ +++L  NP
Sbjct: 293 DELPQVGNLSLKGNP 307

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
            CP+ C+C          +DC +  + + +P  IP +A  LYL  N+I  +    F    
Sbjct: 12  ACPSQCSC------SGTTVDCRSKRHAS-VPAGIPTNAQILYLHDNQITKLEPGVFDSLI 64

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L+ L+L S+ +  +    F+ L +L +L L  N+LT +    F+RL +L+EL++  NK+
Sbjct: 65  NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
             +  R    LTHL  L LD N++ S    A   LSS +    L  NPW C+C
Sbjct: 125 TELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS-LTHAYLFGNPWDCEC 175

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 92.5 bits (230), Expect = 4e-21
 Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 33/157 (21%)

Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
           Q LYL  N +T L     D L +L  L L  N L  +P  +F+    L  + L  N + V
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI---FK 364
           L   +F+ L  L  L +  N+LT                               +    +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT------------------------------ELPRGIE 132

Query: 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
            L  L  L L+ NQ++SI    F  LS+L    +  N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
             V  ++     +  GI    T   +L L +N++T+       F  L  L  L +  N++
Sbjct: 22  TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGV--FDSLINLKELYLGSNQL 76

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
             L   +F  L +L VL L  NQ+  +    F  L +L  L M  NKL  +    ++ LT
Sbjct: 77  GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLT 135

Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
            L+ L+LD N+L+ I   A    +SL   +L GN
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
           +L +  N++ KL+  +F  L  L+ L+L +NQ+ ++    F SL+ L  L +  N+L  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
            S   D L  L  L +  N+L  +    ++  T L    L+ N+L  IP      L SL 
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 466 TLDLGDN 472
              L  N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 41/127 (32%), Positives = 62/127 (48%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           Q+L+L +NQI  +    F SL NL  L + +N+L  +     DSLT L+VL L  N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
           +          L++  +  NKLTE+P+ +  L  L  L L  N +  I + + + L  L 
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 490 GLRLTEN 496
              L  N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 32/105 (30%), Positives = 56/105 (53%)

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
           + L L DN IT++     +SL  L  L L  N +  +  GVF+ L+ LT+L+L +N++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
           + +  FD   +L  + +  N LT++     +L +L  L + +N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           + + L +   +I  L  G F  L  LK L L   +         +   VF D L  L  L
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYL--GSNQLGA----LPVGVF-DSLTQLTVL 93

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI----NLRVLDL 228
           DL  N +  LP A+F  L  L  L +  NKL+ +             GI    +L  L L
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-----------GIERLTHLTHLAL 142

Query: 229 SNNSFDSLPAEGFSRLSRLQELYLQGN 255
             N   S+P   F RLS L   YL GN
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 29/173 (16%)

Query: 577 IPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFL 633
           IP + Q L +H NQI++L    F  +S + L      SN+L  L         +   L L
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95

Query: 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI-----NQTALRISPLPSH--KNIPD--- 683
             N ++ +    F    +L  + +  N+L  +       T L    L  +  K+IP    
Sbjct: 96  GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 684 --------FYIGENPFQCDCN-----MQWL-QSYSVNKERNKPNLVDLDTVTC 722
                    Y+  NP+ C+C        W+    S+    +   + D D+  C
Sbjct: 156 DRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKC 208

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            +L  G F +L  L  L +   ++  L +  F  L  LK L +   N         +   
Sbjct: 77  GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTE-----LPRG 130

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           +  + L  L  L L  N + ++P   F  L SL++  L  N
Sbjct: 131 I--ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 98.7 bits (245), Expect = 3e-21
 Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 24/346 (6%)

Query: 155 LDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
           L  +          +   +  ++  ++ P  +   + +L  +           T    N 
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 215 DTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVL 274
            +     +L    L++          ++     +E  L  +               L   
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRC 354

Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
            LSV     +  EL                +  L P     L  +I+L  + + L  E  
Sbjct: 355 ELSVEKSTVLQSEL-----------ESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQVLHLENNQIESIHRNTFAS 389
               FS L  +  +  AY    +    +   +       ++VLHL +  +  +       
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQ 461

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
           L  +  L +S+N+L+ +    L +L  L VL   +N LE ++   + N   LQ+  L  N
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518

Query: 450 KLTEIPKV--LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
           +L +   +  L +   L  L+L  N + +   +       L  +  
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 87.5 bits (216), Expect = 9e-18
 Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 12/259 (4%)

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
             L   +L+     +    ++  S   KE  L  +              QL   +LS  +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEK 360

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
            T         S L     L     +      +I   +  L  L  E   ++        
Sbjct: 361 STV------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
                  L    +K     S        + VL L + +L  +    L+    +    L+ 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSH 472

Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFE 507
           N+L  +P  L  L  L+ L   DN +  ++ ++  +L +L  L L  N +   +      
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 508 KLSVLTILNLASNKIQKVE 526
               L +LNL  N + + E
Sbjct: 531 SCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.5 bits (190), Expect = 1e-14
 Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 13/259 (5%)

Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
             L   ++           I+      +   L  ++ E   R+  A+   L    +S  K
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK 360

Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLH 462
              ++ + L+S   L  L  +N          ++    L  +     +     K +  + 
Sbjct: 361 STVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMR 418

Query: 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
           +    DL  +     N++       +  L L   +++ +     E+L ++T L+L+ N++
Sbjct: 419 AAYLDDL-RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL 475

Query: 523 QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP---- 578
           + +          L  ++   N L ++ G+   LP L  L +  N L+    A+ P    
Sbjct: 476 RALPPA-LAALRCLEVLQASDNALENVDGV-ANLPRLQELLLCNNRLQQSA-AIQPLVSC 532

Query: 579 ADLQWLDIHGNQISELGNY 597
             L  L++ GN + +    
Sbjct: 533 PRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 3e-14
 Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 8/344 (2%)

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
           V N     P   +QS      +L   +         +V  +   L +  +          
Sbjct: 215 VQNAFFTDPN--DQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMG 272

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
           T   +     L++ +   +  +      L  L    L +   +   R  +    +    +
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
           +  ++          +   L    L   +   ++   L++   LQ   L       +  +
Sbjct: 333 LLKDR-PECWCRDSATDEQLFRCELSVEKSTVLQSE-LESCKELQ--ELEPENKWCLLTI 388

Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
           +  + +L  L      +   + L      + A L    +     +  +  + + + +L+L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
           A   +  +     +    +  + L  N L  +      L  L  L  S+N LE  D    
Sbjct: 449 AHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506

Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
              LQ L +  N++ +      + S  RL   +   N L +  G
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 3e-13
 Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 6/268 (2%)

Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
                    S   L  L   SL++   ++        S S ++  L  ++     +    
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
              L   +L     T + +  L S  +L  L             +   L  L        
Sbjct: 348 DEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
               ++    D         L   +L +   L  +  ++  L+++   L    +      
Sbjct: 407 YFSTLK--AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
           +  LD+  N++  L     + +   L    AS N L  + G A    ++ L L NN + +
Sbjct: 465 VTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522

Query: 641 VQPYTFFMK-PNLTRVDLVGNRLKNINQ 667
                  +  P L  ++L GN L     
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 1e-06
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            +   L    S     ++       ++ +L L    LT +     E+L  +  L L +N+
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR 474

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
           +  +      +L  L+VLQ   N + + 
Sbjct: 475 LRALPP-ALAALRCLEVLQASDNALENV 501

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           LH     IE +     ++L     L +S N +++I   SL  +  L +LSL  N ++ I 
Sbjct: 30  LHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI- 85

Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAG 490
           EN    + +L++  ++ N++  +   +  L +L+ L + +N IT    +  L +L +L  
Sbjct: 86  ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144

Query: 491 LRLTENNISNISK 503
           L L  N + N  K
Sbjct: 145 LLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 85.1 bits (211), Expect = 8e-19
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 401 NKLKRIESNSLDSLTALSVLSLDN--NELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
           + ++  E       T    + L      +E ++   L    + +   L+ N + +I   L
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI-SSL 66

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA 518
             + +L+ L LG NLI +I NL       L  L ++ N I+++S    EKL  L +L ++
Sbjct: 67  SGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRVLYMS 123

Query: 519 SNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558
           +NKI              L  + L GN L +          
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
           L       + +     S L   + L L  N +  ++   L G+ +L +L+L  N +  I 
Sbjct: 30  LHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIE 86

Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
             L   +  L+E+++  N I  L+      L  L VL +SNN++T  W      + L +L
Sbjct: 87  N-LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKL 142

Query: 346 VVLNIAYNKM-NKLDSSIFKDLYRLQVL 372
             L +A N + N    +     YR++V+
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEW 333
           L+  +  +  +   L    +  K + L  N+I  ++    + +  L +L L  N + +  
Sbjct: 30  LHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK-- 84

Query: 334 VNAATFSGLH----RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFA 388
                   L      L  L I+YN++  L     + L  L+VL++ NN+I +    +  A
Sbjct: 85  -----IENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 389 SLSNLHTLIMSNNKL 403
           +L  L  L+++ N L
Sbjct: 138 ALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 9/144 (6%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            EL+     I  +   +    K  + L L+++++E I +   +G++ L IL L  N + +
Sbjct: 28  VELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK 84

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--Q 922
           I   +    + L EL++ YN+I  +S      L +L+VL + +N+IT++  +  L++  +
Sbjct: 85  IENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 923 IQSITLTSNPWSCDCDFTEKFRDY 946
           ++ + L  NP   D        +Y
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL-NSLTVLNLSVNN 280
             + L LS N+ + +     S +  L+ L L  N++  + +  LD + ++L  L +S N 
Sbjct: 49  ACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQ 104

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATF 339
           + ++      +  +L+ +Y+ NN I           L +L  L L+ N L  ++      
Sbjct: 105 IASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162

Query: 340 SGLHRLVVLNI 350
           S     VV  +
Sbjct: 163 SEYRIEVVKRL 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 5/148 (3%)

Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNY--LTDIGGLFPKLPNLVWLNISENLLEWFD 573
               + I+  E       +    + L G    +  +      L     L +S N +E   
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS 64

Query: 574 YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFL 633
                 +L+ L +  N I ++ N   +     L     S N++  L+G     ++  L++
Sbjct: 65  SLSGMENLRILSLGRNLIKKIENLDAVADT--LEELWISYNQIASLSGIEKLVNLRVLYM 122

Query: 634 TNNLISKVQPYTFFMK-PNLTRVDLVGN 660
           +NN I+             L  + L GN
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 155 LDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATF 209
           L +S N          +++L  L L  N I  + + +     +L  L ++ N++++++  
Sbjct: 53  LALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGI 111

Query: 210 SFSNYDTARCGINLRVLDLSNNSFDSLPA-EGFSRLSRLQELYLQGNILT 258
                      +NLRVL +SNN   +    +  + L +L++L L GN L 
Sbjct: 112 E--------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 63/370 (17%), Positives = 112/370 (30%), Gaps = 76/370 (20%)

Query: 167 QSLESLDLSMNSIW-----TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
             + SLDLS+N+++      L  A      S++ LNL+ N L    +        A    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-LAAIPA 80

Query: 222 NLRVLDLSNNSFDSLPAEGFSRL-----SRLQELYLQGNILT-----FLADHALDGLN-S 270
           N+  L+LS N      ++   +        +  L L  N  +          A   L  S
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-AFSNLPAS 139

Query: 271 LTVLNLSVNNL-----VNIPPELFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLI 320
           +T LNL  N+L       +   L     ++  + L+ N++       LA  + ++   + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
            LDLS N L  +                         L          +  L+L  N + 
Sbjct: 200 SLDLSANLLGLKSYAE---------------------LAYIFSSIPNHVVSLNLCLNCLH 238

Query: 381 SIHRNTFASL----SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
                    L     +L T+ +  + +K +      +L                   A  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-----------------AAFP 281

Query: 437 NSTSLQDFHLNGNKLT-----EIPKVLRNLH-SLKTLDLGDNLITEINNLSLNSLHQLAG 490
           N   +     NG ++       I  ++R L        L +  +        N       
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 491 LRLTENNISN 500
             L E+  + 
Sbjct: 342 DELRESIQTC 351

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 45/295 (15%), Positives = 97/295 (32%), Gaps = 66/295 (22%)

Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
             +  LDLS N L               L+              +       +  L+L  
Sbjct: 22  HGVTSLDLSLNNLYSI--------STVELI-------------QAFANTPASVTSLNLSG 60

Query: 377 NQIESIHRNTFASL-----SNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNE 426
           N +   + +    +     +N+ +L +S N L    S+ L          ++VL L  N+
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 427 L-----EYIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLH-SLKTLDLGDNLIT 475
                    ++       S+   +L GN L       + ++L  +  ++ +L+L  N + 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 476 EI-----------NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
                           S+ SL  L+   L   + + ++       + +  LNL  N +  
Sbjct: 181 SKNCAELAKFLASIPASVTSLD-LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

Query: 525 VE----AGTFDNNSNLVAIRLDGNYLTDIGG--------LFPKLPNLVWLNISEN 567
                     D+  +L  + LD + + ++           FP +  ++ ++ +  
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 47/323 (14%), Positives = 95/323 (29%), Gaps = 83/323 (25%)

Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
           +  L++    +   S+    + L  +   T+           LD+  N F+ +       
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPF-TITV---------LDLGWNDFSSKSSSEFKQ 131

Query: 166 -----LQSLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
                  S+ SL+L  N +       L   +     +++ LNL  N L++      + + 
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRL-----SRLQELYLQGNILT-----FLADHAL 265
            +    ++  LDLS N          + +     + +  L L  N L       L     
Sbjct: 192 ASIPA-SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL-LK 249

Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
           D L  L  + L  + + N+  E   Q + L   +                   +I++D +
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKE---QCKALGAAFPNIQK--------------IILVDKN 292

Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
             E+                            + + I +   +  V  L N  +    ++
Sbjct: 293 GKEIHPSHSIP---------------------ISNLIRELSGKADVPSLLNQCLIFAQKH 331

Query: 386 TFASL-----SNLHTLIMSNNKL 403
                       L   I +   L
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 50/299 (16%), Positives = 103/299 (34%), Gaps = 58/299 (19%)

Query: 434 ALKNSTSLQDFHLNGNKLTE-----IPKVLRNLH-SLKTLDLGDNLITEI---------- 477
                  +    L+ N L       + +   N   S+ +L+L  N +             
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 478 -NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF-----D 531
               ++ SL+ L+G  L+  +   + K +      +T+L+L  N      +  F     +
Sbjct: 77  AIPANVTSLN-LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 532 NNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQI 591
             +++ ++ L GN L                 + + L      A IPA++  L++ GN +
Sbjct: 136 LPASITSLNLRGNDLGIKSSDE----------LIQIL------AAIPANVNSLNLRGNNL 179

Query: 592 SELGNYFEIESQLR-----LTYFDASSNKLTELTGNAI-------PHSVENLFLTNNLIS 639
           +      E+   L      +T  D S+N L   +   +       P+ V +L L  N + 
Sbjct: 180 ASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 640 K--VQPYTFFMKPN--LTRVDLVGNRLKNINQTALR--ISPLPSHKNIPDFYIGENPFQ 692
              ++           L  V L  + +KN+++   +   +  P+ + I           
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 32/250 (12%), Positives = 71/250 (28%), Gaps = 57/250 (22%)

Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
           +  L++    +G  S+    + L  +    + +         L++  N    +       
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPA-NVNS---------LNLRGNNLASKNCAELAK 189

Query: 166 -----LQSLESLDLSMNSIWT-----LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
                  S+ SLDLS N +       L          +  LNL  N L   +  +     
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
            +    +L+ + L  +   ++  E    L                   A   +  + +++
Sbjct: 250 DSLK--HLQTVYLDYDIVKNMSKEQCKALG-----------------AAFPNIQKIILVD 290

Query: 276 LSVNNL-----VNIPPELFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQLIVLDLS 325
            +   +     + I   +   S       L N  +     +       N+  +L     +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 326 NNELTEEWVN 335
              L E   +
Sbjct: 351 CKPLLEHHHH 360

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 85.0 bits (211), Expect = 4e-19
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 35/172 (20%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP+ C+C          I C++ G  + +P  IP  AT L L+ N++             
Sbjct: 1   CPSRCSC------SGTEIRCNSKGLTS-VPTGIPSSATRLELESNKL------------- 40

Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
                      +++ +  F+ L +L  L L  N++  +    F++L  L  LYL  NK+ 
Sbjct: 41  -----------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
            + N  F  LT LK L LD N++ S        L+S +Q I L +NPW C C
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSC 140

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 35/103 (33%), Positives = 52/103 (50%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L +  NK+  L   +F  L +L  L L  NQI+S+    F  L+ L  L +  NKL+ +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
            +   D LT L  L+LD N+L+ + +      TSLQ   L+ N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 26/132 (19%)

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
               + L++N +  L  G+F+ LTQL  L LS N++                        
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------------------- 65

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
               L   +F  L +L +L+L  N+++S+    F  L+ L  L +  N+LK +     D 
Sbjct: 66  ---SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

Query: 414 LTALSVLSLDNN 425
           LT+L  + L  N
Sbjct: 123 LTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 26/130 (20%)

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
           T L L  N L ++P  +F++   L ++ L  N I  L  G+F+ LT+L +L L  N+L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
                                     L + +F  L +L+ L L+ NQ++S+    F  L+
Sbjct: 91  --------------------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124

Query: 392 NLHTLIMSNN 401
           +L  + +  N
Sbjct: 125 SLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
             L LE+N+++S+    F  L+ L  L +S N+++ +     D LT L++L L  N+L+ 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
           +        T L++  L+ N+L  +P  +   L SL+ + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
           GI  +   L+L +N   SLP   F +L++L +L L  N +  L D   D L  LT+L L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
            N L ++P  +F++   LKE+ L  N +  +  GIF+ LT L  + L  N
Sbjct: 85  ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           +S     L  NKL  +P  V   L  L  L L  N I  + +   + L +L  L L EN 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           + ++  GVF+KL+ L  L L +N+++ V  G FD  ++L  I L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           +RC  +   +  ++    S+P  G    S    L L+ N L  L     D L  LT L+L
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           S N + ++P  +F++   L  +YL  N +  L  G+F+ LTQL  L L  N+L
Sbjct: 60  SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
             L+L  N +  + +   + L QL  L L++N I ++  GVF+KL+ LTIL L  NK+Q 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLN 563
           +  G FD  + L  + LD N L  +  G+F +L +L  +WL+
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 13/112 (11%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
           S   L++  N          D+L  L  L LS N I +LPD +F  L  L+ L L +NKL
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
            ++    F           L+ L L  N   S+P   F RL+ LQ+++L  N
Sbjct: 89  QSLPNGVFDKL------TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
            SL  G F  L  L  LS+   +I +L  G F  L KL  L L   N   S     + + 
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQS-----LPNG 94

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
           VF D+L  L+ L L  N + ++PD IF  L SL  + L  N
Sbjct: 95  VF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 34/159 (21%)

Query: 577 IPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV------- 628
           IP+    L++  N++  L    F  +   +LT    S N++  L     P  V       
Sbjct: 26  IPSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQSL-----PDGVFDKLTKL 78

Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGE 688
             L+L  N +  +    F     L  + L  N+LK++              ++   ++  
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHT 133

Query: 689 NPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
           NP+ C C       +WL               +  +  C
Sbjct: 134 NPWDCSCPRIDYLSRWL--------NKNSQ-KEQGSAKC 163

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 89.4 bits (222), Expect = 8e-19
 Identities = 53/323 (16%), Positives = 103/323 (31%), Gaps = 60/323 (18%)

Query: 293 RDLKEVYLQNNSINVL-APGIFNVL---TQLIVLDLSNNELTEEWVN--AATFSGLHRLV 346
             ++   L+ ++I       +F VL     +  + LS N +  E     +   +    L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 347 VLNIAYNKMNKLDSSI----------FKDLYRLQVLHLENNQIESIHRNTFASL----SN 392
           +   +     ++   I               +L  + L +N      +          + 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 393 LHTLIMSNNKL-------------KRIESNSLDSLTALSVLSLDNNELE-----YIEENA 434
           L  L + NN L             +   +    +   L  +    N LE        +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-T 182

Query: 435 LKNSTSLQDFHLNGNKLTE------IPKVLRNLHSLKTLDLGDNLITE--INNLS--LNS 484
            ++   L    +  N +        + + L     LK LDL DN  T    + L+  L S
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 485 LHQLAGLRLTENNISNI-SKGVFEKLSV-----LTILNLASNKIQKVEAGTF-----DNN 533
              L  L L +  +S   +  V +  S      L  L L  N+I+     T      +  
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 534 SNLVAIRLDGNYLTDIGGLFPKL 556
            +L+ + L+GN  ++   +  ++
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEI 325

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 84.0 bits (208), Expect = 5e-17
 Identities = 68/426 (15%), Positives = 116/426 (27%), Gaps = 125/426 (29%)

Query: 154 SLDISHNVFTDE-----------LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
              +  +  T E             S++ + LS N+I    +A     + LS   +   K
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--TEAA----RWLSEN-IASKK 60

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
                              +L + + S+     +  E    L  L +             
Sbjct: 61  -------------------DLEIAEFSDIFTGRVKDEIPEALRLLLQ------------- 88

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
            AL     L  + LS N                        +   L   + +  T L  L
Sbjct: 89  -ALLKCPKLHTVRLSDNA-------------------FGPTAQEPLIDFL-SKHTPLEHL 127

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
            L NN L  +                 IA        +   K+   L+ +    N++E+ 
Sbjct: 128 YLHNNGLGPQAGAK-------------IARALQELAVNKKAKNAPPLRSIICGRNRLEN- 173

Query: 383 HRNTFASLSNLHTLIMSNNKLK--RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
                 S+        S+  L   ++  N +       +L              L     
Sbjct: 174 -----GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-----------EGLAYCQE 217

Query: 441 LQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEI------NNLSLNSLHQLA 489
           L+   L  N  T      +   L++  +L+ L L D L++        +  S      L 
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277

Query: 490 GLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAG------TFDNNSNLVA 538
            LRL  N I       +   + EK+  L  L L  N+  + +         F        
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337

Query: 539 IRLDGN 544
             LD  
Sbjct: 338 DELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 48/338 (14%), Positives = 93/338 (27%), Gaps = 96/338 (28%)

Query: 369 LQVLHLENNQI---------ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
           ++ + L  N I         E+I         +L     S+    R++    ++L  L  
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLL- 87

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLI 474
                         AL     L    L+ N         +   L     L+ L L +N +
Sbjct: 88  -------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

Query: 475 TE-------------INNLSLNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILN 516
                            N    +   L  +    N + N      +K  F+   +L  + 
Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVK 193

Query: 517 LASNKI-----QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571
           +  N I     + +          L  + L  N  T +G             ++  L  W
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS----------ALAIALKSW 243

Query: 572 FDYALIPADLQWLDIHGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH 626
                   +L+ L ++   +S      + + F     + L       N++       +  
Sbjct: 244 -------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
                 +   +            P+L  ++L GNR   
Sbjct: 297 V-----IDEKM------------PDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 52/273 (19%), Positives = 83/273 (30%), Gaps = 70/273 (25%)

Query: 114 LKDLSVEFCKIGNLSAGSFRG-------LRKLKTLTLRTHNTDWSTMSLDISHNVFTDE- 165
           L+         G +              L K   L            ++ +S N F    
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-----------TVRLSDNAFGPTA 110

Query: 166 ----------LQSLESLDLSMNSI-------------WTLPDAIFCPLQSLSYLNLTQNK 202
                        LE L L  N +                 +        L  +   +N+
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSF-----DSLPAEGFSRLSRLQELYLQGNIL 257
           L N +   ++   T +    L  + +  N       + L  EG +    L+ L LQ N  
Sbjct: 171 LENGSMKEWA--KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 258 T-----FLADHALDGLNSLTVLNLSVNN--------LVNIPPELFNQSRDLKEVYLQNNS 304
           T      LA  AL    +L  L L+           +V+   +L N    L+ + LQ N 
Sbjct: 229 THLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG--LQTLRLQYNE 285

Query: 305 IN-----VLAPGIFNVLTQLIVLDLSNNELTEE 332
           I       L   I   +  L+ L+L+ N  +EE
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 8e-12
 Identities = 53/321 (16%), Positives = 103/321 (32%), Gaps = 58/321 (18%)

Query: 113 DLKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQ---- 167
            +K++ +    IG  +A      +   K L       ++S +      +   + L+    
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLE----IAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 168 ------SLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNV-------ATF 209
                  L ++ LS N+        L D +      L +L L  N L          A  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 210 SFSNYDTARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGN------ILTF 259
             +    A+    LR +    N  ++      A+ F     L  + +  N      I   
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 260 LADHALDGLNSLTVLNLSVNNL----VNIPPELFNQSRDLKEVYLQNNSI-NVLAPGIFN 314
           L +  L     L VL+L  N       +          +L+E+ L +  +    A  + +
Sbjct: 208 LLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 315 VL-----TQLIVLDLSNNELTEEWVNA---ATFSGLHRLVVLNIAYNKMNKLDSSI---- 362
                    L  L L  NE+  + V          +  L+ L +  N+ ++ D  +    
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326

Query: 363 --FKDLYRLQVLHLENNQIES 381
             F    R ++  L++ +  +
Sbjct: 327 EVFSTRGRGELDELDDMEELT 347

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.0 bits (214), Expect = 4e-18
 Identities = 65/308 (21%), Positives = 103/308 (33%), Gaps = 57/308 (18%)

Query: 130 GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLS-MNSIW-TLPDAIF 187
            +     ++  L L   N         I  ++    L  L  L +  +N++   +P AI 
Sbjct: 44  DTDTQTYRVNNLDLSGLNL---PKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSR 246
             L  L YL +T   +S       S          L  LD S N+   +LP    S L  
Sbjct: 99  K-LTQLHYLYITHTNVSGAIPDFLSQI------KTLVTLDFSYNALSGTLPPS-ISSLPN 150

Query: 247 LQELYLQGNILTFLADHALDGLNSL-TVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNS 304
           L  +   GN ++     +    + L T + +S N L   IPP   N +  L  V L  N 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNM 208

Query: 305 INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI-- 362
           +   A  +F        + L+ N L          +                     +  
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSL----------AF-------------------DLGK 239

Query: 363 FKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLK-RI-ESNSLDSLTALSV 419
                 L  L L NN+I  ++ +     L  LH+L +S N L   I +  +L      + 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 420 LSLDNNEL 427
            +  N  L
Sbjct: 299 AN--NKCL 304

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 8e-16
 Identities = 51/301 (16%), Positives = 99/301 (32%), Gaps = 70/301 (23%)

Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHL-NGNKLT-EI 454
            N     +  ++      ++ L L    L       ++L N   L   ++   N L   I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 455 PKVLRNLHSLKTLDLGDNLIT-----EINNLSLNSLHQLAGLRLTENNIS-NISKGVFEK 508
           P  +  L  L  L +    ++      ++ +       L  L  + N +S  +   +   
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPSIS-S 147

Query: 509 LSVLTILNLASNKIQKVEAGT----FDNNSNLV-AIRLDGNYLT-----DIGGLFPKLPN 558
           L  L  +    N+I     G     + + S L  ++ +  N LT         L     N
Sbjct: 148 LPNLVGITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----N 198

Query: 559 LVWLNISENLLEWFDYALIPAD------LQWLDIHGNQ----ISELGNYFEIESQLR-LT 607
           L ++++S N+LE                 Q + +  N     + ++G         + L 
Sbjct: 199 LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-------SKNLN 247

Query: 608 YFDASSNKLTELTGNAIPHSVENL-FLT------NNLISKVQPYTFFMKPNLTRVDLVGN 660
             D  +N+   + G  +P  +  L FL       NNL  ++ P    ++          N
Sbjct: 248 GLDLRNNR---IYG-TLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQ-RFDVSAYANN 301

Query: 661 R 661
           +
Sbjct: 302 K 302

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 82.9 bits (204), Expect = 6e-17
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 845 KTFNGLKELIILRLDDNR-LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
               G + L  L +++ + L  +   +   L  LR L +  + + +++   F     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 904 LQLDHNRITSFAVWHLSS-QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
           L L  N + S +   +    +Q + L+ NP  C C      + + +     V +      
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRW-LQRWEEEGLGGVPEQKLQCH 143

Query: 963 MTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNN 994
             G           +P+  V   N S    ++
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDD 175

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 77.1 bits (189), Expect = 6e-15
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 222 NLRVLDLS-NNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
           NL  L +        L       L  L+ L +  + L F+A  A      L+ LNLS N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSIN 306
           L ++  +   Q   L+E+ L  N ++
Sbjct: 92  LESLSWKTV-QGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 76.3 bits (187), Expect = 9e-15
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 338 TFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
              G   L  L I   +    L+    + L  L+ L +  + +  +  + F     L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
            +S N L+ +   ++  L+ L  L L  N L
Sbjct: 86  NLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 447 NGNKLTEIPKVLRNLHSLKTLDL-GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
             +   +    L    +L  L +     +  +    L  L +L  L + ++ +  ++   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
           F     L+ LNL+ N ++ +   T    S L  + L GN L 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.8 bits (183), Expect = 3e-14
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 386 TFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
                 NL  L + N + L+ +E   L  L  L  L++  + L ++  +A   +  L   
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDN 472
           +L+ N L  +        SL+ L L  N
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.2 bits (179), Expect = 9e-14
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP--MDATELYLDGNR-IPVVGSHSFIG 825
           CP+ C  +      ++ + C+  G  +     +P   + TELY++  + +  +      G
Sbjct: 1   CPDACCPH-----GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRG 54

Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
             +L+ L +  S +  +    F+    L  L L  N L  +     + L +L+EL L  N
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-ILTFLADHALDGLNSLTVLNL 276
               +  +    + + DSL          L ELY++    L  L    L GL  L  L +
Sbjct: 6   CPHGSSGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
             + L  + P+ F+ +  L  + L  N++  L+      L+ L  L LS N L 
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 70.2 bits (171), Expect = 1e-12
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
            ++ +++ L          L  L + N +  +  +      GL  L  L I  + +  + 
Sbjct: 16  TRDGALDSLHH--LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
              F    RL  L+L  N +ES+   T   LS L  L++S N L
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 7e-11
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 605 RLTYFDASSNK-LTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNR 661
            LT     + + L  L    +     + NL +  + +  V P  F   P L+R++L  N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 662 LKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
           L++++   ++   L          +  NP  C C ++WLQ +
Sbjct: 92  LESLSWKTVQGLSLQE------LVLSGNPLHCSCALRWLQRW 127

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 506 FEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLN 563
                 LT L + + + +Q +E         L  + +  + L  +    F   P L  LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 564 ISENLLEWF-DYALIPADLQWLDIHGN 589
           +S N LE      +    LQ L + GN
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 91  IECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK-IGNLSAGSFRGLRKLKTLTLRTHNTD 149
           + C       S           +L +L +E  + + +L     RGL +L+ LT+    + 
Sbjct: 13  LRCTRDGALDS---LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSG 67

Query: 150 WSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
                  ++ + F      L  L+LS N++ +L       L SL  L L+ N L
Sbjct: 68  LRF----VAPDAFHF-TPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 131 SFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPL 190
              G   L  L +  +          +        L  L +L +  + +  +    F   
Sbjct: 26  HLPGAENLTELYIE-NQQHLQH----LELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD 234
             LS LNL+ N L +++  +          ++L+ L LS N   
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQG-------LSLQELVLSGNPLH 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
           ++ L+   + +    AA ++   R   L++   K+  +++ +   L +   +   +N+I 
Sbjct: 1   MVKLTAELIEQ----AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55

Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE-NALKNST 439
            +  + F  L  L TL+++NN++ RI      +L  L+ L L NN L  + + + L +  
Sbjct: 56  KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 440 SLQDFHLNGNKLTEIP----KVLRNLHSLKTLDLGDNLITEI 477
           SL    +  N +T        V+  +  ++ LD     + E 
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
           L    + +  +   N    + LDL    I  I NL   +L Q   +  ++N I  +    
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG-- 59

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLN 563
           F  L  L  L + +N+I ++  G      +L  + L  N L ++G L P   L +L +L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 564 ISEN 567
           I  N
Sbjct: 120 ILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
           +   +++       +      L L   ++  IE N             + N++ ++    
Sbjct: 5   TAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG-F 60

Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNL 517
             L  LKTL + +N I  I      +L  L  L LT N++  +        L  LT L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 518 ASNKIQKVE 526
             N +   +
Sbjct: 121 LRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 31/171 (18%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           ++LT   I   ++  +        L+L   KI  +E           AI    N +  + 
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58

Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLTY 608
           G  P L  L  L ++ N +      L  A  DL  L +  N + ELG+            
Sbjct: 59  GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD------------ 105

Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK---PNLTRVD 656
                  L  L       S+  L +  N ++  + Y  ++    P +  +D
Sbjct: 106 -------LDPLASL---KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           + L+   I       +        L+L   K+  +      N            +D S+N
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-----ENLGATL--DQFDAIDFSDN 52

Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP-ELFN 290
               L  +GF  L RL+ L +  N +  + +     L  LT L L+ N+LV +   +   
Sbjct: 53  EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 291 QSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLDLSNNELTE 331
             + L  + +  N +         +   + Q+ VLD    +L E
Sbjct: 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
            EL L G +IPV+  +      +   +  + + +  +    F  L+ L  L +++NR+  
Sbjct: 22  RELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICR 78

Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLS-LTHLKVLQLDHNRITS 913
           I     + L +L EL L  N ++ + +   L+ L  L  L +  N +T+
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
           + L   LI +       +  +   L L    I  I   +   L     ++ + N+I+K++
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58

Query: 527 AGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENL---LEWFDYALIPADLQ 582
              F     L  + ++ N +  I  GL   LP+L  L ++ N    L   D       L 
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 583 WLDIHGNQISELGNY--FEIESQLRLTYFDASSNKLTE 618
           +L I  N ++   +Y  + I    ++   D    KL E
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            + + L L    +  I N     L +   +   DN + ++ G  F  L  L+ L +  N+
Sbjct: 19  VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNR 75

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
           I  I      +L  L  L L +N +     +  L+S   +  + +  NP
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 562 LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
           + ++  L+E           + LD+ G +I  + N      Q     F  S N++ +L G
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDF--SDNEIRKLDG 59

Query: 622 NAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
             +   ++ L + NN I ++        P+LT + L  N L  +      + PL S K++
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD----LDPLASLKSL 115

Query: 682 PDFYIGENPFQCDCN 696
               I  NP     +
Sbjct: 116 TYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 154 SLDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
           ++D S N          L+ L++L ++ N I  + + +   L  L+ L LT N L  +  
Sbjct: 46  AIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 209 FSFSNYDTARCGINLRVLDLSNN 231
                 D      +L  L +  N
Sbjct: 106 L-----DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           +++L    + +   Y        REL L+  KI  I N    +L     +    N I   
Sbjct: 1   MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL 57

Query: 915 AVWHLSSQIQSITLTSN 931
             + L  +++++ + +N
Sbjct: 58  DGFPLLRRLKTLLVNNN 74

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
           VL    +    I     A   NL  L + N  L  + +  L  L  L  L L  N +   
Sbjct: 30  VLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGG 86

Query: 431 EENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            +   +   +L   +L+GNKL +I   + L+ L  LK+LDL +  +T +N+   +    L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 489 AGLR 492
             L 
Sbjct: 147 PQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 283 NIPPELFNQS-RDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
            I  EL N++   ++E+ L N   N     G+      L  L L N  L       +   
Sbjct: 13  RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLP 68

Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMS 399
            L +L  L ++ N++      + + L  L  L+L  N+++ I        L  L +L + 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 400 NNKLKRIE 407
           N ++  + 
Sbjct: 129 NCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
           K +        +  A+  L LDN +    + E       +L+   L    L  +   L  
Sbjct: 11  KRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK 69

Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLAS 519
           L  LK L+L +N I    ++    L  L  L L+ N + +IS     +KL  L  L+L +
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 520 NKIQKVE 526
            ++  + 
Sbjct: 130 CEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           NL  L L N    S+      +L +L++L L  N +    D   + L +LT LNLS N L
Sbjct: 50  NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 282 VNIPP-ELFNQSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLDLSNNELTE 331
            +I   E   +   LK + L N  +  L      +F +L QL  LD  + E  E
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 459 RNLHSLKTLDLGD--NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
           R   +++ L L +  +   +I  L       L  L L    + ++S     KL  L  L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLE 77

Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISEN 567
           L+ N+I        +   NL  + L GN L DI  L P  KL  L  L++   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 243 RLSRLQELYLQGNILTFLA-DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301
             + ++EL L          +       +L  L+L    L+++      +   LK++ L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSS 361
            N I      +   L  L  L+LS N+L ++         L  L  L++   ++  L+  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND- 137

Query: 362 IFKDLYRLQVLHL 374
                YR  V  L
Sbjct: 138 -----YRESVFKL 145

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 828 KLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
            ++ L L++        +        L  L L +  L  +      +L  L++L L  N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENR 82

Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
           I    +     L +L  L L  N++   + +  L     ++S+ L +  
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
           PA ++ L +   + ++          + L +    +  L  ++       ++ L L+ N 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
           I           PNLT ++L GN+LK+I+     + PL   + +    +    
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDIST----LEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 21/115 (18%)

Query: 133 RGLRKLKTLTLRTHNTDWSTM-----------SLDISHNVFTD-----ELQSLESLDLSM 176
           R    ++ L L    ++   +            L + +          +L  L+ L+LS 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           N I+   D +   L +L++LNL+ NKL +++T      +  +    L+ LDL N 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-----EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
           E L   F       +L++L +    +  + N   +    +L   + S N++         
Sbjct: 42  EGLTAEFV------NLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 626 H--SVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNIN 666
              ++ +L L+ N +  +       K   L  +DL    + N+N
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
             L L    +  V +       KL+ L L+ + +    +     L  L  L L  N+L +
Sbjct: 52  EFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 866 IRGYE-FERLENLRELYLQYNKIIYISN---RTFLSLTHLKVLQLDHNRIT 912
           I   E  ++LE L+ L L   ++  +++     F  L  L    LD     
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY--LDGYDRE 158

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 362 IFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
             +    ++ L L+N++               L  L   N  L  I +  L  L  L  L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKL 69

Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEIN 478
            L +N +    E   +   +L   +L+GNK+ ++   + L+ L +LK+LDL +  +T +N
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 479 NLSLNSLHQLAGLR 492
           +   N    L  L 
Sbjct: 130 DYRENVFKLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 284 IPPELFNQS-RDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
           I  EL N++  D+KE+ L N+  N     G+ +   +L  L   N  LT           
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------- 55

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
                              +    L +L+ L L +N++            NL  L +S N
Sbjct: 56  -----------------SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 402 KLKRIES-NSLDSLTALSVLSLDNNELEYIEE 432
           K+K + +   L  L  L  L L N E+  + +
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 413 SLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
           + + +  L LDN+     + E        L+        LT I   L  L+ LK L+L D
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKVE 526
           N ++    +       L  L L+ N I ++S     +KL  L  L+L + ++  + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 222 NLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
           +++ L L N+  +    EG       L+ L      LT +A+  L  LN L  L LS N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEE 332
           +      L  +  +L  + L  N I  L+       L  L  LDL N E+T  
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 459 RNLHSLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
           R    +K L L ++   E     L +   +L  L      +++I+     KL+ L  L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLEL 71

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISEN 567
           + N++        +   NL  + L GN + D+  + P  KL NL  L++   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
            L  L   N    S+      +L++L++L L  N ++   +   +   +LT LNLS N +
Sbjct: 43  ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 282 VNIP-PELFNQSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLD 323
            ++   E   +  +LK + L N  +  L      +F +L QL  LD
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 243 RLSRLQELYLQGNILTFLA-DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301
             S ++EL L  +       +   D    L  L+     L +I      +   LK++ L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSS 361
           +N ++     +      L  L+LS N++ ++         L  L  L++   ++  L+  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNLND- 130

Query: 362 IFKDLYRLQVLHL 374
                YR  V  L
Sbjct: 131 -----YRENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 827 KKLQILFLNSSHVETIHNKT-FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
             ++ L L++S       +   +  +EL  L   +  LT I      +L  L++L L  N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74

Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
           ++            +L  L L  N+I   + +  L     ++S+ L +  
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
           P+D++ L +  ++ +E       +    L +    +  LT +      + ++ L L++N 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75

Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
           +S          PNLT ++L GN++K+++     I PL   +N+    +         +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLST----IEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 154 SLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
            L   +   T      +L  L+ L+LS N +    + +     +L++LNL+ NK+ +   
Sbjct: 46  FLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--- 102

Query: 209 FSFSNYDTARCGINLRVLDLSNN 231
              S  +  +   NL+ LDL N 
Sbjct: 103 --LSTIEPLKKLENLKSLDLFNC 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.2 bits (189), Expect = 3e-14
 Identities = 95/695 (13%), Positives = 211/695 (30%), Gaps = 179/695 (25%)

Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
           V N    ++ ++P  + +   ++  + +  ++++         L     L     E+ ++
Sbjct: 30  VDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVS-------GTLRLFWTLLSKQEEMVQK 81

Query: 333 WVNAATFSGLHRLVVLNIAYN-KMNKL-----DSSIFKDLYRLQVLHLEN-NQIESIHRN 385
           +V            VL I Y   M+ +       S+   +Y  Q   L N NQ+ + +  
Sbjct: 82  FVEE----------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-- 129

Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSL--------TALSVLSLDNNELEYIEENALKN 437
              ++S L   +     L  +       +        T +++    + +++   +  +  
Sbjct: 130 ---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-- 184

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
                 F LN         VL  L           L+ +I+    +     + ++L  ++
Sbjct: 185 ------FWLNLKNCNSPETVLEML---------QKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 498 ISNISKGVFEKLS---VLTIL-NLASNKIQKVEAGTFDNNSN-LVAIRLDGNYLTDIGGL 552
           I    + + +       L +L N+ + K     A  F+ +   L+  R        +   
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKA--WNA--FNLSCKILLTTR-FKQVTDFLSAA 284

Query: 553 FPKLPNLVWLNI------SENLL-EWFDYALIPADL--QWLDIHGNQISELGNYFEIESQ 603
                +L   ++       ++LL ++ D    P DL  + L  +  ++S +      +  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIR-DGL 341

Query: 604 LRLTYF-DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR---VDLVG 659
                +   + +KLT      I  S+  L                 +P   R     L  
Sbjct: 342 ATWDNWKHVNCDKLTT----IIESSLNVL-----------------EPAEYRKMFDRLS- 379

Query: 660 NRLKNINQTALRISPLPSHKNIPD-----FYIGENPFQCDCNMQWLQSYSVNKERNKPNL 714
                       +   P   +IP       +           +  L  YS+ +++ K + 
Sbjct: 380 ------------V--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 715 VDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCT 774
           + + ++  +L     N        H    +  Y     P     D    D      +   
Sbjct: 426 ISIPSIYLELKVKLEN----EYALH-RSIVDHYN---IPKTFDSD----DLIPPYLDQYF 473

Query: 775 C----YHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQ 830
                +H       + +                    ++LD           F+ +K   
Sbjct: 474 YSHIGHH-------LKNIEHPERMTLFR--------MVFLD---------FRFLEQK--- 506

Query: 831 ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLEN-LRELYLQYNKIIY 889
              +   H  T  N + + L  L  L+     + +    ++ERL N + +   +  + + 
Sbjct: 507 ---IR--HDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLI 560

Query: 890 ISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQ 924
            S   +  L  +  L  +   I   A      Q+Q
Sbjct: 561 CSK--YTDLLRI-ALMAEDEAIFEEA----HKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 5e-13
 Identities = 103/571 (18%), Positives = 172/571 (30%), Gaps = 179/571 (31%)

Query: 8   VFITVLISALGLVSASISKALR--YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCK 65
           +F T+L     +V   + + LR  Y      K+   +    E   PS       + +  +
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINY------KFLM-SPIKTEQRQPS---MMTRMYIEQR 116

Query: 66  LRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG 125
            R  N    N  F+    +Y V  R++    L  + +L       L   K++ ++    G
Sbjct: 117 DRLYND---NQVFA----KYNVS-RLQPYLKL--RQAL-----LELRPAKNVLID----G 157

Query: 126 NLSAGSFRGLRK--LKTLTLRTHNTD--------WSTMSLDISHNVFTDELQSLES-LDL 174
            L +G      K  +      ++           W  +    S     + LQ L   +D 
Sbjct: 158 VLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 175 SMNSIWTLPDAIFCPLQSLSY--LNLTQNK--------LSNV------ATFSFSNYDTAR 218
           +  S       I   + S+      L ++K        L NV        F+        
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL------S 265

Query: 219 CGINLRVLDLSNNS--FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           C    ++L  +      D L A   + +S      L  + +T   D     L  L  L+ 
Sbjct: 266 C----KILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEVKSLL--LKYLDC 313

Query: 277 SVNNL----VNIPP-------ELFNQSRDLKEVYLQNN----------SINVLAP----- 310
              +L    +   P       E         + +   N          S+NVL P     
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 311 -----GIFN--------VL-----------TQLIVLDLSNNELTEEWVNAATFS------ 340
                 +F         +L             ++V  L    L E+    +T S      
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 341 ----------GLHRLVVLNIAYNKMNKLDSS----IFKDLYRLQVL--HL---ENNQIES 381
                      LHR +V    YN     DS      + D Y    +  HL   E+ +  +
Sbjct: 434 ELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNS--- 438
           + R  F     L        K++   +    S + L+ L        YI +N  K     
Sbjct: 492 LFRMVFLDFRFL------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469
            ++ DF         +PK+  NL   K  DL
Sbjct: 546 NAILDF---------LPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 9e-05
 Identities = 100/659 (15%), Positives = 204/659 (30%), Gaps = 171/659 (25%)

Query: 608  YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR--VDLVGNRLKNI 665
            + D  + +      + +    +  F+ N     VQ      K  L++  +D +      +
Sbjct: 6    HMDFETGEHQYQYKDILSVFEDA-FVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAV 61

Query: 666  NQTALRISPLPSH-KNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCK- 723
            + T      L S  + +   ++ E       N ++L S  +  E+ +P+++    +  + 
Sbjct: 62   SGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRD 117

Query: 724  LLYN-----------RANPAILLKEAHSNQFLCEYETNCAPLCH--------CCDFDAC- 763
             LYN           R  P + L++A     L E       L              D C 
Sbjct: 118  RLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 764  DCEMTCPNNCTCYHDVSWEANVIDCSTGGYD----NQLPPRIPMDATELYLDGNRIPVVG 819
              ++ C  +      + W  N+ +C++         +L  +I  + T      + I +  
Sbjct: 173  SYKVQCKMDF----KIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-R 226

Query: 820  SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLR 878
             HS   + +L+ L  +  +              L++L   +         +         
Sbjct: 227  IHSI--QAELRRLLKSKPYENC-----------LLVL--LNVQNAKAWNAFNLS------ 265

Query: 879  ELYLQYNKII----YISNRTFLSLTHLKVLQLDHNRITS--------FAVWHLSSQIQSI 926
                   KI+    +     FLS      + LDH+ +T            + L  + Q +
Sbjct: 266  ------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDL 318

Query: 927  ---TLTSNPWSCDCDFTEKFRDYLQRS----RSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
                LT+NP        E  RD L         +   ++ I   + + +     R +   
Sbjct: 319  PREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 980  CNVVSTNVSSHSNNNNNTTTTTTTTTIF---IPEHSPMNGSFILSEL--------QPQQD 1028
             +V   +              T   ++    + +   M    ++++L        QP++ 
Sbjct: 378  LSVFPPSAH----------IPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKES 424

Query: 1029 YVFLLIILVSASFVLVLLLIL---IIIYRQEMRVW-------------FHSRFGVRLFYK 1072
             + +  I +     L     L   I+ +    + +             F+S  G    + 
Sbjct: 425  TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HH 480

Query: 1073 SSEIEMDDRDKLF-DAFVSYSSKDEAFVAEEL-APILENGDPAYKLCL-----HYREFPV 1125
               IE  +R  LF   F+ +      F+ +++             L        Y+    
Sbjct: 481  LKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKP--- 532

Query: 1126 GGYIGD---TIVQAVESSRRTIMVLSENFIKSEWCR-----------YEFKSAHHQVLR 1170
              YI D      + V +    +  + EN I S++               F+ AH QV R
Sbjct: 533  --YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           QVL+L +NQI  +    F  L+ L  L + NN+L  + +   D LT L+ LSL++N+L+ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 430 IEENALKNSTSLQDFHLNGN 449
           I   A  N  SL    L  N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
           +L L DN++T++    F+RL  L  L L  N++  +    F  LT L  L L+ N++ S 
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 915 ---AVWHLSSQIQSITLTSNPWSCDC 937
              A  +L S +  I L +NPW C C
Sbjct: 94  PRGAFDNLKS-LTHIWLLNNPWDCAC 118

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
           GI    +VL L +N    L    F RL++L  L L  N LT L     D L  LT L+L+
Sbjct: 27  GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNN 303
            N L +IP   F+  + L  ++L NN
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 27/79 (34%), Positives = 46/79 (58%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
           VL +  N++ KL+  +F  L +L  L L+NNQ+  +    F  L+ L  L +++N+LK I
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 407 ESNSLDSLTALSVLSLDNN 425
              + D+L +L+ + L NN
Sbjct: 94  PRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S S      +G  L  +P  +    + + L L DN IT++     + L QL  L L  N 
Sbjct: 8   SCSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           ++ +  GVF+KL+ LT L+L  N+++ +  G FDN  +L  I L  N
Sbjct: 66  LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 26/108 (24%)

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
             + +YL +N I  L PG+F+ LTQL  LDL NN+LT                       
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT----------------------- 67

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
               L + +F  L +L  L L +NQ++SI R  F +L +L  + + NN
Sbjct: 68  ---VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 27/113 (23%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           ++C  +   +D S  S  S+P                  I T           +  VL L
Sbjct: 5   SQCSCSGTTVDCSGKSLASVPT----------------GIPT-----------TTQVLYL 37

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
             N +  + P +F++   L  + L NN + VL  G+F+ LTQL  L L++N+L
Sbjct: 38  YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
           +    L + +N++ ++E    D LT L+ L LDNN+L  +        T L    LN N+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 451 LTEIPK-VLRNLHSLKTLDLGDN 472
           L  IP+    NL SL  + L +N
Sbjct: 90  LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
           L L +N I+ +  GVF++L+ LT L+L +N++  + AG FD  + L  + L+ N L  I 
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94

Query: 550 GGLFPKLPNL--VWL 562
            G F  L +L  +WL
Sbjct: 95  RGAFDNLKSLTHIWL 109

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
            +L L  N+I K+E G FD  + L  + LD N LT +  G+F KL  L  L++++N L
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 39/113 (34%)

Query: 151 STMSLDISHN--------VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
           +T  L +  N        VF D L  L  LDL  N +  LP  +F  L  L+ L+L  N+
Sbjct: 31  TTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
           L                               S+P   F  L  L  ++L  N
Sbjct: 90  LK------------------------------SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 41/154 (26%)

Query: 577 IPADLQWLDIHGNQISELGN-YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLF--L 633
           IP   Q L ++ NQI++L    F  +   +LT  D  +N+LT      +P  V   F  L
Sbjct: 28  IPTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNNQLT-----VLPAGV---FDKL 77

Query: 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQC 693
           T                 LT++ L  N+LK+I + A     L S  +I   ++  NP+ C
Sbjct: 78  T----------------QLTQLSLNDNQLKSIPRGAF--DNLKSLTHI---WLLNNPWDC 116

Query: 694 DCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
            C+      +W+  +         N +D D+  C
Sbjct: 117 ACSDILYLSRWISQHP-GLVFGYLN-LDPDSARC 148

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 31/80 (38%), Positives = 40/80 (50%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           Q L L NNQI  +    F  L NL  L  ++NKL  I +   D LT L+ L L++N L+ 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 430 IEENALKNSTSLQDFHLNGN 449
           I   A  N  SL   +L  N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
            L L++N++T++    F+ L NL++LY   NK+  I    F  LT L  L L+ N + S 
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96

Query: 915 ---AVWHLSSQIQSITLTSNPWSCDC 937
              A  +L S +  I L +NPW C+C
Sbjct: 97  PRGAFDNLKS-LTHIYLYNNPWDCEC 121

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
           GI  + + L L+NN    L    F  L  LQ+LY   N LT +     D L  LT L+L+
Sbjct: 30  GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNN 303
            N+L +IP   F+  + L  +YL NN
Sbjct: 90  DNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            L +  N++ KL+  +F  L  LQ L+  +N++ +I    F  L+ L  L +++N LK I
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96

Query: 407 ESNSLDSLTALSVLSLDNN 425
              + D+L +L+ + L NN
Sbjct: 97  PRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
           S      +    +L  +P  +      + L L +N IT++     + L  L  L    N 
Sbjct: 11  SCDQTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68

Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           ++ I  GVF+KL+ LT L+L  N ++ +  G FDN  +L  I L  N
Sbjct: 69  LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 26/108 (24%)

Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
           D + ++L NN I  L PG+F+ L  L  L  ++N+LT                       
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT----------------------- 70

Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
               + + +F  L +L  L L +N ++SI R  F +L +L  + + NN
Sbjct: 71  ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 27/113 (23%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
           ++C  +  +++  N    S+PA                 I T               L L
Sbjct: 8   SQCSCDQTLVNCQNIRLASVPA----------------GIPT-----------DKQRLWL 40

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           + N +  + P +F+   +L+++Y  +N +  +  G+F+ LTQL  LDL++N L
Sbjct: 41  NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
           L L  N I+ +  GVF+ L  L  L   SNK+  +  G FD  + L  + L+ N+L  I 
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97

Query: 550 GGLFPKLPNL--VWL 562
            G F  L +L  ++L
Sbjct: 98  RGAFDNLKSLTHIYL 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
           ++   L ++NN++ ++E    D L  L  L  ++N+L  I        T L    LN N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 451 LTEIPK-VLRNLHSLKTLDLGDN 472
           L  IP+    NL SL  + L +N
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
             L L +N+I K+E G FD+  NL  +  + N LT I  G+F KL  L  L++++N L
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 34/152 (22%)

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
           IP D Q L ++ NQI++L              FD     L  L           L+  +N
Sbjct: 31  IPTDKQRLWLNNNQITKLEP----------GVFD----HLVNLQ---------QLYFNSN 67

Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
            ++ +    F     LT++DL  N LK+I + A     L S  +I   Y+  NP+ C+C 
Sbjct: 68  KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF--DNLKSLTHI---YLYNNPWDCECR 122

Query: 697 -----MQWL-QSYSVNKERNKPNLVDLDTVTC 722
                  W+    S+    +   + D D+  C
Sbjct: 123 DIMYLRNWVADHTSIVMRWDGKAVNDPDSAKC 154

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 39/113 (34%)

Query: 151 STMSLDISHN--------VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
               L +++N        VF D L +L+ L  + N +  +P  +F  L  L+ L+L  N 
Sbjct: 34  DKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
           L                               S+P   F  L  L  +YL  N
Sbjct: 93  LK------------------------------SIPRGAFDNLKSLTHIYLYNN 115

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 66/430 (15%), Positives = 143/430 (33%), Gaps = 61/430 (14%)

Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
           L+++ ++   + +       +  +  K L L +    +ST  L           ++L+ L
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGFSTDGL----AAIAATCRNLKEL 161

Query: 173 DLSMNSIWTLPD----AIFCPLQSLSYLNL--TQNKLSNVATFSFSNYDTARCGINLRVL 226
           DL  + +  +             SL  LN+    +++S  A          RC  NL+ L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV----TRCP-NLKSL 216

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQG--NILTFLADHALD----GLNSLTVLNLSVNN 280
            L+        A    R  +L+EL   G    +       L     G   L  L+   + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
           +    P +++    L  + L   ++       +     +L  L + +  + +  +     
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA- 334

Query: 340 SGLHRLVVLNIAYNKMNKLDS----------SIFKDLYRLQVLHLENNQI-----ESIHR 384
           S    L  L +  ++   ++           S+     +L+ +     Q+      +I R
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394

Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLD--------SLTALSVLSLD----NNELEYIEE 432
           N   +++     I+       +    LD            L  LSL     +   EYI  
Sbjct: 395 N-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI-- 451

Query: 433 NALKNSTSLQDFHLNGNKLTE--IPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLA 489
                +  ++   +     ++  +  VL    SL+ L++ D     +    + + L  + 
Sbjct: 452 --GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509

Query: 490 GLRLTENNIS 499
            L ++  ++S
Sbjct: 510 SLWMSSCSVS 519

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 62/383 (16%), Positives = 113/383 (29%), Gaps = 73/383 (19%)

Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
           L       +   + CP+++L  L   Q     +          +   ++         + 
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSEL-LDHLFFHYEFQN- 63

Query: 234 DSLPAEGFSRLSRLQELYLQGNILT-----FLADHALDGLNSLTVLNLSVNNLVNIPPE- 287
               AE    LS L++L L G  +T      +A     G ++L  +NL+      + P  
Sbjct: 64  QRFSAEV---LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAG 117

Query: 288 ---LFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
              L       +++ LQ NS+       L   + +   Q+  L LSNN LT         
Sbjct: 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA------- 170

Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHT 395
            G+  L                       +  L L +  +        A+       L  
Sbjct: 171 -GVAVL--------------MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215

Query: 396 LIMSNNKLKRIE----SNSLDSLTALSVLSLDNNELEYIEENAL-------KNSTSLQDF 444
           L ++ N          + +     +L +L L  NEL       L       +    +   
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 445 HLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
              G  ++E     + +V RNL+S     +  +L   + +L  +    L   R  +    
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRV 335

Query: 500 NISKGVFEKLSVLTILNLASNKI 522
                       +  L       
Sbjct: 336 E---------GEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 56/331 (16%), Positives = 98/331 (29%), Gaps = 64/331 (19%)

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR-LSRLQ 248
           L SL  LNL   +++ V     +          L  ++L++   D            R +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVA-AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 249 ELYLQGNILT-----FLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
           +L LQ N L       L D  L     +T L LS N L                      
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-------------------TAA 170

Query: 304 SINVLAPGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKMN----K 357
            + VL  G+    T +  L L +  L +E +   AA      +L  LN+AYN        
Sbjct: 171 GVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 358 LDSSIFKDLYRLQVLHLENNQIE-------SIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
             +   ++   L++LHL  N++                  + +   +     +      S
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV------S 283

Query: 411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLK 465
                 LS +  + N  +      ++    L    L  ++          ++LR    ++
Sbjct: 284 EYWSVILSEVQRNLNSWD---RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR 340

Query: 466 TLDLGDNLITEI----------NNLSLNSLH 486
            L                         +  H
Sbjct: 341 ALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 35/240 (14%)

Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
           L   N  + +       +L  L        KL ++    L     L  L   + E +   
Sbjct: 7   LSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFF-HYEFQNQR 65

Query: 432 ENALKNSTSLQDFHLNGNKLTE-----IPKVLR-NLHSLKTLDLGDNLITEINNLSL-NS 484
             + +  +SL+  +L G ++T      +  VL    H+L  ++L    +      +L   
Sbjct: 66  F-SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124

Query: 485 LHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DNNSN 535
             +   L L  N++       +   +      +T L L++N +              N++
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELG 595
           +  + L    L D G             ++  L            LQ L++  N   +  
Sbjct: 185 VTHLSLLHTGLGDEGLEL----------LAAQLDR-------NRQLQELNVAYNGAGDTA 227

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE----- 165
            +  + L ++   +G  +    R L       + T         L +S+N  T       
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT---------LRLSNNPLTAAGVAVL 175

Query: 166 ------LQSLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
                   S+  L L    +       L   +    + L  LN+  N   + A  + +  
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARA 234

Query: 215 DTARCGINLRVLDLSNNSFDS----LPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
                  +L +L L  N   S    +  +          + +     T ++++    L+ 
Sbjct: 235 AREHP--SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292

Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
           +   NL+  +   +   L    RDL++      +    A  +  V  ++  L        
Sbjct: 293 V-QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL-RVEGEVRALLEQLGSSG 350

Query: 331 EE 332
             
Sbjct: 351 SP 352

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.3 bits (151), Expect = 6e-10
 Identities = 64/426 (15%), Positives = 133/426 (31%), Gaps = 57/426 (13%)

Query: 114 LKDLSVEFC-KIGNLSAGSF-RGLRKLKTLTL-RTHNTDWSTMSLDISHNVFTDELQSLE 170
           L+ L ++ C         S     RK+KTL +  +  ++     L    +       SLE
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL----HELAQHNTSLE 195

Query: 171 SLDLSMNSIWTLPD----AIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
            L+  M     +       I    +SL  + +   ++  +  F        +   NL   
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-------FKAAANLEEF 248

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL----NSLTVLNLSVNNLV 282
              + + D    E +  L   ++L   G  L+++  + +  L      +  L+L    L 
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLG--LSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 283 -NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
                 L  +  +L+ +  +N   +     +     QL  L +      +   +      
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
              L+              ++ +    L+ + +  + I      T  SL    ++     
Sbjct: 367 QRGLI--------------ALAQGCQELEYMAVYVSDI------TNESLE---SIGTYLK 403

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLR 459
            L       LD    ++ L LD N +  +     K       F+L    LT   +  + +
Sbjct: 404 NLCDFRLVLLDREERITDLPLD-NGVRSLLIG-CKKLRRF-AFYLRQGGLTDLGLSYIGQ 460

Query: 460 NLHSLKTLDLGDNLITE--INNLSLNSLHQLAGLRLTENNISNIS-KGVFEKLSVLTILN 516
              +++ + LG    ++  +          L  L +     S  +      KL  L  L 
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 517 LASNKI 522
           +   + 
Sbjct: 520 VQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 2e-09
 Identities = 50/373 (13%), Positives = 118/373 (31%), Gaps = 37/373 (9%)

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
                 + ++     +       R   L+ L L+G      A   L   N    +   V 
Sbjct: 49  SETREHVTMALCYTATPDRL-SRRFPNLRSLKLKGK--PRAAMFNLIPENWGGYVTPWVT 105

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN-NELTEEWVNAAT 338
            + N   +L  +S   + + + +  ++ LA         L  L L   +  T + + +  
Sbjct: 106 EISNNLRQL--KSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIV 160

Query: 339 FSGLHRLVVLNIAYNKMNKLD----SSIFKDLYRLQVLHLENNQIESIHRNTFASL---- 390
            +   ++  L +  +  ++ D      + +    L+VL+    +   I      ++    
Sbjct: 161 -THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 391 SNLHTLIMSNNKLKRIES--NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
            +L ++ + + ++  +     +  +L      SL+ +     +   L     L    L+ 
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 449 NKLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVF 506
               E+P +      ++ LDL    L TE +   +     L  L    N I +   + + 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 507 EKLSVLTILNLASNKIQKVEAGTFD------------NNSNLVAIRLDGNYLTDIG--GL 552
           +    L  L +     ++                       L  + +  + +T+     +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 553 FPKLPNLVWLNIS 565
              L NL    + 
Sbjct: 399 GTYLKNLCDFRLV 411

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 7e-06
 Identities = 35/315 (11%), Positives = 85/315 (26%), Gaps = 42/315 (13%)

Query: 109 QTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQS 168
             L +    S+           +    RKL  L L  +        L             
Sbjct: 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS-YMGPNEMPIL-------FPFAAQ 294

Query: 169 LESLDLSMNSIWTLP-DAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           +  LDL    + T     +     +L  L    N + +           A+    L+ L 
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-----AQYCKQLKRLR 348

Query: 228 LSNNSFDSLPAEGFSRLS------------RLQELYLQGNILTFLADHAL-DGLNSLTVL 274
           +   + +    +    +S             L+ + +  + +T  +  ++   L +L   
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408

Query: 275 NL-SVNNLVNIPPELFNQS--------RDLKEVYLQNNSINVLAPGIFNV---LTQLIVL 322
            L  ++    I     +          + L+          +   G+  +      +  +
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468

Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIES 381
            L     ++E +      G   L  L +       +  ++    L  L+ L ++  +   
Sbjct: 469 LLGYVGESDEGL-MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

Query: 382 IHRNTFASLSNLHTL 396
             ++          +
Sbjct: 528 TGQDLMQMARPYWNI 542

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 50/312 (16%), Positives = 94/312 (30%), Gaps = 17/312 (5%)

Query: 240 GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299
                + +  L L G +      H  D   SL VL++S   +     +          +Y
Sbjct: 20  TEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIY 79

Query: 300 LQN----NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           + N     + + +  G+      L  + LS   +    +  A F G   L +  I     
Sbjct: 80  MANFVPAYAFSNVVNGVTKGKQTLEKVILSEK-IKN--IEDAAFKGCDNLKICQIRKKTA 136

Query: 356 NKLDSSIFKDLYRLQVLHLENNQI----ESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
             L      D      + L ++             F     L T I     + ++E   +
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIM 195

Query: 412 D---SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTL 467
                   ++ L+++        +       +L    ++    T IP         L  +
Sbjct: 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255

Query: 468 DLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527
            L  N +  I     ++  +LAG      +++ I  G F     L  +    +KI  +  
Sbjct: 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314

Query: 528 GTFDNNSNLVAI 539
             F N      I
Sbjct: 315 ELFGNGVPSKLI 326

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 44/292 (15%), Positives = 87/292 (29%), Gaps = 14/292 (4%)

Query: 156 DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
           D  H    DE  SL+ LD+S   I               Y+ +     +   + +  N  
Sbjct: 40  DFRH--LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS-NVVNGV 96

Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
           T      L  + LS     ++    F     L+   ++      L   AL    +   + 
Sbjct: 97  TKGK-QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154

Query: 276 LSVNNLVNIPPEL----FNQSRDLKEVYLQNNSINVLAPGIFNVLTQL--IVLDLSNNEL 329
           L  ++            F +   L+       ++  L   I     Q   I       +L
Sbjct: 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTIEGKL 213

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
                       +  LV L+I+      +    F     L  + L +N +++I +  F++
Sbjct: 214 DN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
              L   +     +  IE  +      L  +    +++  + +    N    
Sbjct: 272 CGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 44/309 (14%), Positives = 104/309 (33%), Gaps = 20/309 (6%)

Query: 254 GNILTFLADHALDGLNSLTVL-NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
           G +++ + +   + +  LT+   L+  +  ++  E  +    LK + + N  I + +   
Sbjct: 13  GTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPS----LKVLDISNAEIKMYSGKA 68

Query: 313 FNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
                    + ++N      + N       G   L  + +   K+  ++ + FK    L+
Sbjct: 69  GTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGCDNLK 127

Query: 371 VLHLENNQIESIHRNTFASLSNL----HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426
           +  +      ++     A              +     R E  +      L         
Sbjct: 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA- 186

Query: 427 LEYIEENALKNSTSLQDFHLNGNKLTEIPK-----VLRNLHSLKTLDLGDNLITEINNLS 481
           +  +E+  +K     +D +       ++       +   + +L +LD+     T I + +
Sbjct: 187 MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT 245

Query: 482 LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
                 L  ++L  +N+  I + VF     L         +  +E G F    NL  +  
Sbjct: 246 FAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304

Query: 542 DGNYLTDIG 550
            G+ +T +G
Sbjct: 305 TGDKITTLG 313

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 43/305 (14%), Positives = 89/305 (29%), Gaps = 59/305 (19%)

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY----IEENALKNSTSLQDF 444
              +L  L +SN ++K     +         + + N    Y    +     K   +L+  
Sbjct: 47  EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKV 106

Query: 445 HLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI----S 499
            L   K+  I     +   +LK   +       +   +L        + L  ++     +
Sbjct: 107 IL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165

Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNL 559
                 F +   L         + K+E            I    N+LT  G L      L
Sbjct: 166 RWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDI----NFLTIEGKLDNADFKL 220

Query: 560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYFDASSNKLTE 618
           +   +               +L  LDI     + + ++ F                 L +
Sbjct: 221 IRDYMP--------------NLVSLDISKTNATTIPDFTFA------------QKKYLLK 254

Query: 619 LTGNAIPHSV----ENLF-----LTNNL-----ISKVQPYTFFMKPNLTRVDLVGNRLKN 664
           +    +PH++    + +F     L   L     ++ ++   F    NL  V   G+++  
Sbjct: 255 IK---LPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITT 311

Query: 665 INQTA 669
           +    
Sbjct: 312 LGDEL 316

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 43/137 (31%)

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
            P     L LT N ++ + P      P L    L                          
Sbjct: 29  FPVDTTELVLTGNNLTALPPGLLDALPALRTAHL-------------------------- 62

Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL----LKEAH 739
              G NP++CDC +  L+++       +P       + C        P  L    L    
Sbjct: 63  ---GANPWRCDCRLVPLRAWL----AGRPERAPYRDLRC------VAPPALRGRLLPYLA 109

Query: 740 SNQFLCEYETNCAPLCH 756
            ++             H
Sbjct: 110 EDELRAACAPGPLSSHH 126

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
           +   L L+ N+  +LP      L  L+  +L  N
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 24/90 (26%)

Query: 875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWS 934
            +  EL L  N +  +      +L  L+   L                        NPW 
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA----------------------NPWR 68

Query: 935 CDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
           CDC      R +L            +RC+ 
Sbjct: 69  CDCRLV-PLRAWLAGRPERA-PYRDLRCVA 96

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
            T L L  N +  +  G  D    L    L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQ-LPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
           CP  C+C         ++DC   G     LP   P+D TEL L GN +  +         
Sbjct: 2   CPAPCSCA------GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALP 55

Query: 828 KLQILFLNS 836
            L+   L +
Sbjct: 56  ALRTAHLGA 64

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
            LDL       + V       L+R        + M      I +++  L  L+L NN++ 
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRR-------SCMAATLRIIEENIPELLSLNLSNNRLY 183

Query: 381 SIH--RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA--LSVLSLDNNELEYIEENALK 436
            +    +      NL  L +S N+LK      LD +    L  L LD N L     +   
Sbjct: 184 RLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQST 241

Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
                            I  +      L  LD
Sbjct: 242 Y----------------ISAIRERFPKLLRLD 257

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSI---WTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
           S  +LD+   + +D     +++D+ +N           I   +  L  LNL+ N+L  + 
Sbjct: 128 SQQALDLK-GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD 186

Query: 208 TFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS--RLQELYLQGNILT 258
             S       +   NL++L+LS N   S       ++   +L+EL+L GN L 
Sbjct: 187 DMS----SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 218 RCGINLRVLDLSNNSFDSLPAEG--FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
           R   + + LDL     D           L+R        + +        + +  L  LN
Sbjct: 124 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR-------SCMAATLRIIEENIPELLSLN 176

Query: 276 LSVNNLVNIPP--ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ--LIVLDLSNNELTE 331
           LS N L  +     +  ++ +LK + L  N +        + +    L  L L  N L +
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234

Query: 332 EWVNAATF 339
            + + +T+
Sbjct: 235 TFRDQSTY 242

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
           +   L +   +       + +    L+  S     L  IEEN  +    L   +L+ N+L
Sbjct: 128 SQQALDLKGLRSDPDLV-AQNIDVVLNRRSCMAATLRIIEENIPE----LLSLNLSNNRL 182

Query: 452 T---EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG---- 504
               ++  +++   +LK L+L  N +     L      +L  L L  N++ +  +     
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242

Query: 505 ---VFEKLSVLTILN 516
              + E+   L  L+
Sbjct: 243 ISAIRERFPKLLRLD 257

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 19/239 (7%)

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
           T +   +    ++  + +   +  + + L     + L N+ ++SI ++ F + S +  ++
Sbjct: 84  TITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNS-VKSIPKDAFRN-SQIAKVV 141

Query: 398 MSNNKLKRIESNSLD--SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
           ++   LK I   +    ++  +       + LE ++E+      +L+   L+  K+T++P
Sbjct: 142 LNEG-LKSIGDMAFFNSTVQEIVF----PSTLEQLKEDIFYYCYNLKKADLSKTKITKLP 196

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
                   ++ + L    + EI + +     QL  + +   N+S I +  F +   +T +
Sbjct: 197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI-PENVSTIGQEAFRESG-ITTV 253

Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGN-----YLTDIG-GLFPKLPNLVWLNISENL 568
            L  N +  + +  F     L  +   G+         I        P L    I E++
Sbjct: 254 KL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI 311

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 4e-06
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 28/202 (13%)

Query: 92  ECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWS 151
           E       Q  LSP     +  L +L ++     ++          LK+L + +     S
Sbjct: 153 EQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDS 208

Query: 152 TMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA---IFCPL------QSLSYLNLTQNK 202
            +      ++   +L +LE L L +       D    +F PL       +L +L +   +
Sbjct: 209 VVE-----DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA----EGFSRLSRLQELYLQGNILT 258
             NV    F     +     L  +D+S        A    +   ++  L+ + ++ N L+
Sbjct: 264 EQNVVVEMFLE---SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 259 FLADHALDGLNSLTVLNLSVNN 280
              D     L     + + V++
Sbjct: 321 ---DEMKKELQKSLPMKIDVSD 339

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 6e-05
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 20/134 (14%)

Query: 222 NLRVLDLSNNSF--DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN---------S 270
           NL+ L++ +       +     S L  L++L L   +  +  D  ++            +
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 271 LTVLNLSVNNLVNIPPELFNQSR---DLKEVYLQNNSI-----NVLAPGIFNVLTQLIVL 322
           L  L +      N+  E+F +S     L+ + +    +      +L   + + +  L  +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFI 312

Query: 323 DLSNNELTEEWVNA 336
           ++  N L++E    
Sbjct: 313 NMKYNYLSDEMKKE 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 46/297 (15%), Positives = 101/297 (34%), Gaps = 40/297 (13%)

Query: 150 WSTMSLDISHNVFTDELQSLESLDLSMN---SIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
           W T+ L   +       + L    ++     S    P A       + +++L+ + +   
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 108

Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL- 265
                 +    +C   L+ L L             ++ S L  L L G   +  ++ AL 
Sbjct: 109 TLHGILS----QC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQ 161

Query: 266 ---DGLNSLTVLNLSVNNLVN---IPPELFNQSRDLKEVYLQNNSINVLAPGIFNV---L 316
                 + L  LNLS         +   + + S  + ++ L     N+    +  +    
Sbjct: 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221

Query: 317 TQLIVLDLSN-NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI--FKDLYRLQVLH 373
             L+ LDLS+   L  +      F  L+ L  L+++    + +  ++    ++  L+ L 
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQ 278

Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
           +               +    TL +    L  ++ N     T ++  ++ N + + I
Sbjct: 279 V-------------FGIVPDGTLQLLKEALPHLQIN-CSHFTTIARPTIGNKKNQEI 321

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILEN-GDPAYKLCLHYREFPVGGYIGDTIVQAVES 1139
                 D F+S++ +D+A   E LA  L   G   +           G  +  +I + + S
Sbjct: 17   SAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWY---DDFSLRPGDSLRRSIDKGLGS 73

Query: 1140 SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVI 1178
            SR  I+VLS +F K EW + E          G+ R++ I
Sbjct: 74   SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPI 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 18/135 (13%)

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
            +   D Y++Q +   ++ I SI  +    L  +  + +       IE   L+ L+ L  
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLEN 111

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD-NLITEIN 478
           L     E+E      + +  ++ D  +           L +  +LK L L D   + E  
Sbjct: 112 LQKSMLEME------IISCGNVTDKGI---------IALHHFRNLKYLFLSDLPGVKEKE 156

Query: 479 NLSLNSLHQLAGLRL 493
            +       L  L L
Sbjct: 157 KIVQAFKTSLPSLEL 171

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 22/163 (13%)

Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHLNGNKLTE-----IP 455
           + R+  +    L  +++ ++     E I     A  NS  ++ F L    +++     + 
Sbjct: 33  INRLREDD-TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSL-NSLHQ---LAGLRLTENNISNISKGVFEKL-- 509
           +++    SL+ L++  N +T      L  S      +   +      S +   V   +  
Sbjct: 92  ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151

Query: 510 -----SVLTILNLASNKI---QKVEAGTFDNNSNLVAIRLDGN 544
                  L  + ++   +    +V      N   +   RL  +
Sbjct: 152 AIEENESLLRVGISFASMEARHRVSEALERNYERVRLRRLGKD 194

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 32/144 (22%)

Query: 403 LKRIESNSLDSLTALSVLSLDNN----ELEYIEENALKNSTSLQDFHLNGNKLTE----- 453
           LKRI++N    L  ++ L+   N     L+   E ALK +T ++ F + G +  +     
Sbjct: 28  LKRIQNND-PDLEEVN-LNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFA 84

Query: 454 IPKVLRNLHSLKTLDLGDNLITEI----------NNLSLNSLHQLAGLRLTENNISN--- 500
           + ++L+  ++LK+L++  N I+            +N SL  L     +      + N   
Sbjct: 85  LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR----IDNQSQPLGNNVE 140

Query: 501 --ISKGVFEKLSVLTILNLASNKI 522
             I+  + EK + L        + 
Sbjct: 141 MEIAN-MLEKNTTLLKFGYHFTQQ 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1269
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.97
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.9
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.66
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.65
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.35
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.43
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.97
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.63
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	91.33

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-89  Score=895.80  Aligned_cols=786  Identities=22%  Similarity=0.336  Sum_probs=451.2

Q ss_pred             EEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCC-CCCccCcccCCCCCCCCE
Q psy5670         171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN-SFDSLPAEGFSRLSRLQE  249 (1269)
Q Consensus       171 ~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  249 (1269)
                      ..+.++++++.+|.    ..++|++|+|++|.++.+.+..|..      +++|++|+|++| .+..+++.+|+++++|++
T Consensus         8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPF------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSS------CCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred             EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcc------cccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence            45556666666664    2356666666666666555544433      456666666666 333444555666666666


Q ss_pred             EEccCCCCcccchhhhcCCCCCcEEEccCCCCCC--CCcccccCCCCCcEEEeeCCcccccCc-ccccCCCCCCEEECcC
Q psy5670         250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN--IPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSN  326 (1269)
Q Consensus       250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~f~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  326 (1269)
                      |+|++|.+..+.+.+|.++++|++|+|++|.+++  .....|..+++|++|+|++|.++++.+ ..|+++++|++|++++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            6666666666656666666666666666666554  222235556666666666666555433 3455556666666655


Q ss_pred             CCCCccccCcccccCC--CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670         327 NELTEEWVNAATFSGL--HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       327 n~l~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      |.+.+  ..+..+..+  ++|+.|+++.|.+.+..+..+..+++                 .|.. ..|+.|++++|.+.
T Consensus       158 N~i~~--~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          158 NQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNGWT  217 (844)
T ss_dssp             SCCCC--CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCCSS
T ss_pred             CcCCe--eCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCcCc
Confidence            55544  223334333  45555555555554433333332222                 0000 01444444444333


Q ss_pred             ccCcccccC---CCCCCEEEccC---------CCCCccChhhhcCC--CCCcEEEccCCCCCCch-hhhcCCCCCcEEEC
Q psy5670         405 RIESNSLDS---LTALSVLSLDN---------NELEYIEENALKNS--TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL  469 (1269)
Q Consensus       405 ~~~~~~~~~---l~~L~~L~Ls~---------n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L  469 (1269)
                      +..+..+..   ...++.|.++.         +.+.......|.++  ++|+.|++++|.+..++ ..+..+++|++|++
T Consensus       218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  297 (844)
T 3j0a_A          218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL  297 (844)
T ss_dssp             TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred             hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence            322222211   12333444332         22222222333332  34555555555444332 23444455555555


Q ss_pred             CCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670         470 GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       470 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      ++|.++++.+..|.++++|+.|+|++|.++.+.+..|.++++|+.|++++|++..+.+..|.++++|+.|++++|.++.+
T Consensus       298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            55555544444444445555555555555444444444455555555555555444444444444455555544444433


Q ss_pred             CCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCcc
Q psy5670         550 GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE  629 (1269)
Q Consensus       550 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~  629 (1269)
                      +.    ++                      +|+.|++++|+++.++..     ..+++.|++++|+++++...       
T Consensus       378 ~~----~~----------------------~L~~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~-------  419 (844)
T 3j0a_A          378 HF----IP----------------------SIPDIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDIL-------  419 (844)
T ss_dssp             SS----CC----------------------SCSEEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTH-------
T ss_pred             cC----CC----------------------CcchhccCCCCccccccc-----ccccceeecccCccccCchh-------
Confidence            22    33                      455555555555544431     23566777777776654321       


Q ss_pred             EEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccccc
Q psy5670         630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER  709 (1269)
Q Consensus       630 ~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~  709 (1269)
                                    ..+..+++|+.|+|++|++++++....    ....                               
T Consensus       420 --------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~-------------------------------  450 (844)
T 3j0a_A          420 --------------YFLLRVPHLQILILNQNRFSSCSGDQT----PSEN-------------------------------  450 (844)
T ss_dssp             --------------HHHTTCTTCCEEEEESCCCCCCCSSSS----SCSC-------------------------------
T ss_pred             --------------hhhhcCCccceeeCCCCcccccccccc----cccC-------------------------------
Confidence                          112345566666666665554321100    0000                               


Q ss_pred             CCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecC
Q psy5670         710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCS  789 (1269)
Q Consensus       710 ~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~  789 (1269)
                                                                                                      
T Consensus       451 --------------------------------------------------------------------------------  450 (844)
T 3j0a_A          451 --------------------------------------------------------------------------------  450 (844)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcc
Q psy5670         790 TGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGY  869 (1269)
Q Consensus       790 ~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~  869 (1269)
                                   .+++.|++++|.++.+...                   .+.+..|.++++|+.|+|++|+|+.+++.
T Consensus       451 -------------~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  498 (844)
T 3j0a_A          451 -------------PSLEQLFLGENMLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPG  498 (844)
T ss_dssp             -------------TTCCBCEEESCCCSSSCCS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred             -------------CccccccCCCCcccccccc-------------------ccchhhhcCcccccEEECCCCcccccChh
Confidence                         1122333333333322211                   11123455566666777777777777777


Q ss_pred             cccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670         870 EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQ  948 (1269)
Q Consensus       870 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~  948 (1269)
                      +|.++++|++|+|++|+|+++++..|.  ++|+.|+|++|+|+++++. +  .+++.+++++|||.|+|++ .||..|++
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~~-~~f~~~~~  573 (844)
T 3j0a_A          499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECEL-STFINWLN  573 (844)
T ss_dssp             SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSSC-CSHHHHHH
T ss_pred             HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCccccccc-HHHHHHHH
Confidence            777777777777777777777776664  6777777777777777776 4  4688999999999999997 69999998


Q ss_pred             hccCCcCc-cCcceeccCCccceeeeeeecCCccccccccccCCCCCCCccccccceeeecCCCCCCCcceeeccCCCcc
Q psy5670         949 RSRSSVHD-ISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQ 1027 (1269)
Q Consensus       949 ~~~~~i~~-~~~~~C~~p~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1269)
                      .....+.+ ..++.|.+|+...+.         ++.++....|.    ..      ...                  ...
T Consensus       574 ~~~~~~~~~~~~~~C~~p~~~~g~---------~l~~~~~~~C~----~~------~~~------------------~~~  616 (844)
T 3j0a_A          574 HTNVTIAGPPADIYCVYPDSFSGV---------SLFSLSTEGCD----EE------EVL------------------KSL  616 (844)
T ss_dssp             HTTTTTCCCGGGCCCSSCSSSCSC---------CTTTCCCCCC-------------------------------------
T ss_pred             hcCcccccccccCccCCchhhCCC---------ccccCccccCC----ch------hhc------------------ccc
Confidence            76655543 467899999887541         23334445665    10      000                  000


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccCCCCceeEEEEcccCCHHHHHHHHHHhh
Q psy5670        1028 DYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPIL 1107 (1269)
Q Consensus      1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDafvsy~~~d~~~v~~~l~~~L 1107 (1269)
                      .+. ++++++++++++++++++++.|+....+||+.. ..++.....+ ++.+++++|||||||+++|++||.++|+|.|
T Consensus       617 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~-~~~~~~~~yd~fisy~~~d~~~v~~~l~~~L  693 (844)
T 3j0a_A          617 KFS-LFIVCTVTLTLFLMTILTVTKFRGFCFICYKTA-QRLVFKDHPQ-GTEPDMYKYDAYLCFSSKDFTWVQNALLKHL  693 (844)
T ss_dssp             -CH-HHHHHHHHHHHHHHTTTSHHHHC-----------------CCCG-GGSSSCCCCSEEEECCSTTHHHHHHTHHHHH
T ss_pred             cee-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHhccccc-cccccceeccEEEEeeCCcHHHHHHHHHHHH
Confidence            111 111222222222222233344443334455433 2233322222 4556789999999999999999999999999


Q ss_pred             hcC---CCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCC
Q psy5670        1108 ENG---DPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGK-KRLIVILLGEV 1183 (1269)
Q Consensus      1108 e~~---~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~ 1183 (1269)
                      |++   ++|||+|+++|||.||+.++++|.++|++|||+|+|+|++|++|+||++|++.|++++++++ +++|+|+++++
T Consensus       694 e~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~  773 (844)
T 3j0a_A          694 DTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSL  773 (844)
T ss_dssp             HSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCC
T ss_pred             hhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence            983   68999999999999999999999999999999999999999999999999999999999888 99999999999


Q ss_pred             CCCCCC--HHHHHHHhcCceEEcCC-----cchHHHHHHhCCCCCCCCCCCCCCC
Q psy5670        1184 PQKDLD--PDIRLYLKSNTYLQWGD-----KLFWEKLKFALPDVPNNQRNNNNRN 1231 (1269)
Q Consensus      1184 ~~~~~~--~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~~~~~~~~~~~~~~ 1231 (1269)
                      ++++++  ++||+++++++||+|++     ++||++||||||.+.+.+ +..+++
T Consensus       774 ~~~~~~~~~~l~~~~~~~~~l~w~~~~~~~~~Fw~~l~~al~~~~~~~-~~~~~~  827 (844)
T 3j0a_A          774 SQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKEK-KKDNNI  827 (844)
T ss_dssp             CSSSCCSCSSTTHHHHTTCCCCCCSSSTTTTHHHHHHTTTTTSCCCCS-CC----
T ss_pred             ChHHhhhhHHHHHHHhhCCeeeCCCCchhHHHHHHHHHHHhccccccc-cCCCCc
Confidence            998873  58999999999999976     589999999999765543 344444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.9e-61  Score=619.81  Aligned_cols=715  Identities=21%  Similarity=0.222  Sum_probs=487.2

Q ss_pred             hhhHHHHHHHhhhhhhhccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeE
Q psy5670           9 FITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVR   88 (1269)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~   88 (1269)
                      -..+|+.|...+......++|....+||.|.||+|+                                      ..+|+.
T Consensus        13 ~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--------------------------------------~~~v~~   54 (768)
T 3rgz_A           13 EIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--------------------------------------DDKVTS   54 (768)
T ss_dssp             HHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--------------------------------------TTEEEE
T ss_pred             HHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--------------------------------------CCcEEE
Confidence            456778877644333234556677889999987552                                      124567


Q ss_pred             EEEEeCCceeeccC---CCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccch--hhh
Q psy5670          89 LRIECGDMLFFQSS---LSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN--VFT  163 (1269)
Q Consensus        89 L~L~~~~~~~~~~~---i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~--~f~  163 (1269)
                      |+|+++.+   .+.   ++ .+|.++++|+.++++.+.+..++. .|.++++|++|+|+++...     ..+ +.  .+ 
T Consensus        55 L~L~~~~l---~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~-----~~~-~~~~~l-  122 (768)
T 3rgz_A           55 IDLSSKPL---NVGFSAVS-SSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS-----GPV-TTLTSL-  122 (768)
T ss_dssp             EECTTSCC---CEEHHHHH-HHTTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEE-----EEG-GGGGGG-
T ss_pred             EECCCCCc---CCccCccC-hhHhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCC-----CcC-CChHHH-
Confidence            77776653   222   44 478888888888888887765543 6888899999999765431     112 33  56 


Q ss_pred             hcCCCCCEEEccCCCCcc-CCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCC
Q psy5670         164 DELQSLESLDLSMNSIWT-LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS  242 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  242 (1269)
                      +++++|++|+|++|.+.. +|...+.++++|++|+|++|++++..+..+..   ...+++|++|++++|.++...+  +.
T Consensus       123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~  197 (768)
T 3rgz_A          123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL---SDGCGELKHLAISGNKISGDVD--VS  197 (768)
T ss_dssp             GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH---TTCCTTCCEEECCSSEEESCCB--CT
T ss_pred             hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh---hccCCCCCEEECCCCcccccCC--cc
Confidence            888999999999888774 34444478888889998888887766544211   1236788888888888876654  47


Q ss_pred             CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670         243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  322 (1269)
                      ++++|++|++++|.+.+..+. ++++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..  .+++|++|
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            788888888888888876665 888888888888888888766677788888888888888887765543  77888888


Q ss_pred             ECcCCCCCccccCcccccC-CCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc-ccccccccCCCCCcEEEccC
Q psy5670         323 DLSNNELTEEWVNAATFSG-LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSN  400 (1269)
Q Consensus       323 ~L~~n~l~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~  400 (1269)
                      ++++|.+.+. + +..+.+ +++|++|++++|.+.+..+..|+.+++|++|++++|.+. .++...|..+++|+.|++++
T Consensus       275 ~L~~n~l~~~-i-p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          275 SLAENKFTGE-I-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             ECCSSEEEES-C-CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             ECcCCccCCc-c-CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            8888887652 2 344444 488888888888888777777888888888888888876 56655577888888888888


Q ss_pred             CcccccCcccccCCC-CCCEEEccCCCCCccChhhhcC--CCCCcEEEccCCCCC-CchhhhcCCCCCcEEECCCCCCCc
Q psy5670         401 NKLKRIESNSLDSLT-ALSVLSLDNNELEYIEENALKN--STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       401 n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      |++++..+..+..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            888777777777766 7888888888777655555554  667777777777776 566677777777777777777777


Q ss_pred             cChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccc-ccCCcCCC
Q psy5670         477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT-DIGGLFPK  555 (1269)
Q Consensus       477 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~  555 (1269)
                      ..+..+..+++|+.|++++|.+....+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            77777777777777777777775444445677777777777777777776777777777777777777776 45556666


Q ss_pred             CCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccC
Q psy5670         556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTN  635 (1269)
Q Consensus       556 l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~  635 (1269)
                      +++|+.|++++|++..    .+|.                   .+..+++|+.|++++|++++..               
T Consensus       513 l~~L~~L~L~~N~l~~----~~p~-------------------~l~~l~~L~~L~Ls~N~l~g~i---------------  554 (768)
T 3rgz_A          513 LENLAILKLSNNSFSG----NIPA-------------------ELGDCRSLIWLDLNTNLFNGTI---------------  554 (768)
T ss_dssp             CTTCCEEECCSSCCEE----ECCG-------------------GGGGCTTCCEEECCSSEEESBC---------------
T ss_pred             CCCCCEEECCCCcccC----cCCH-------------------HHcCCCCCCEEECCCCccCCcC---------------
Confidence            6666666666665541    1111                   1233445555555555555433               


Q ss_pred             cccccccCCccCCCCCccEEEcCC-CCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcc
Q psy5670         636 NLISKVQPYTFFMKPNLTRVDLVG-NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNL  714 (1269)
Q Consensus       636 N~i~~~~~~~f~~~~~L~~LdLs~-N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~  714 (1269)
                             |..+.....+..+++.. +++..+.....     ..........+.                          +
T Consensus       555 -------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------~  596 (768)
T 3rgz_A          555 -------PAAMFKQSGKIAANFIAGKRYVYIKNDGM-----KKECHGAGNLLE--------------------------F  596 (768)
T ss_dssp             -------CGGGGTTTTCBCCSTTCSCEEEEEECCSC-----CTTCCSSEEEEE--------------------------C
T ss_pred             -------ChHHhcccchhhhhccccccccccccccc-----cccccccccccc--------------------------c
Confidence                   33322222222222211 11111111000     010000000000                          0


Q ss_pred             cccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCcc
Q psy5670         715 VDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYD  794 (1269)
Q Consensus       715 ~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~  794 (1269)
                      .....             ..+..+..                                                      
T Consensus       597 ~~~~~-------------~~~~~l~~------------------------------------------------------  609 (768)
T 3rgz_A          597 QGIRS-------------EQLNRLST------------------------------------------------------  609 (768)
T ss_dssp             TTCCG-------------GGGGGGGG------------------------------------------------------
T ss_pred             ccccc-------------hhhhcccc------------------------------------------------------
Confidence            00000             00000000                                                      


Q ss_pred             ccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCC
Q psy5670         795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL  874 (1269)
Q Consensus       795 ~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l  874 (1269)
                                ...+++..|.+....+..|.++++|+.|+|++|+++...|..|..+++|+.|+|++|++++..|..|.++
T Consensus       610 ----------~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          610 ----------RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             ----------TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ----------ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                      0001111222222233456778899999999999999889999999999999999999999888999999


Q ss_pred             cccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCccccc
Q psy5670         875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCD  936 (1269)
Q Consensus       875 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~  936 (1269)
                      ++|++|+|++|++++..|..|..+++|++|+|++|+|++..|. ....++....+.|||.-|.
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence            9999999999999999999999999999999999999987776 3445555667889999886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.3e-60  Score=605.20  Aligned_cols=619  Identities=25%  Similarity=0.340  Sum_probs=375.2

Q ss_pred             CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670         170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE  249 (1269)
Q Consensus       170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  249 (1269)
                      +.++.+++.++.+|... .  +++++|+|++|+++++++..|..      +++|++|+|++|.++.+++..|+++++|++
T Consensus         7 ~~~~cs~~~L~~ip~~~-~--~~l~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL-P--TNITVLNLTHNQLRRLPAANFTR------YSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             SEEECCSSCCSSCCSCS-C--TTCSEEECCSSCCCCCCGGGGGG------GTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             CeeECCCCCcccccccc-C--CCCcEEECCCCCCCCcCHHHHhC------CCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            45666766676666543 1  56666666666666655544433      355666666666666665555666666666


Q ss_pred             EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670         250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL  329 (1269)
Q Consensus       250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  329 (1269)
                      |++++|.++.+++.+|+++++|++|++++|+++.+++..|..+++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            66666666665555566666666666666666666555556666666666666666555555555556666666665555


Q ss_pred             CccccCcccc--cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccc---cCCCCCcEEEccCCccc
Q psy5670         330 TEEWVNAATF--SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF---ASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       330 ~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f---~~l~~L~~L~Ls~n~l~  404 (1269)
                      ++  +.+..+  ..+++|+.|++++|.+.++.+..+..+++|+.|+++++.+.......+   ...++|+.|++++|.+.
T Consensus       158 ~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          158 QA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             CC--BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             cc--cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence            44  222222  233555555555555555555555555555555555544431111000   01234444445444444


Q ss_pred             ccCcccccCCCC--CCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670         405 RIESNSLDSLTA--LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL  482 (1269)
Q Consensus       405 ~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~  482 (1269)
                      +..+..+.+++.  |+.|++++|.+.++.+..|..+++|++|++++|                       .++++.+..|
T Consensus       236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----------------------~l~~~~~~~~  292 (680)
T 1ziw_A          236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-----------------------NIQHLFSHSL  292 (680)
T ss_dssp             EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-----------------------CBSEECTTTT
T ss_pred             ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-----------------------ccCccChhhh
Confidence            444444444332  444444444444444444444444444444444                       4444444444


Q ss_pred             hccccCCeeeccCCcCC---------CCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccc--ccC-
Q psy5670         483 NSLHQLAGLRLTENNIS---------NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT--DIG-  550 (1269)
Q Consensus       483 ~~l~~L~~L~Ls~n~l~---------~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~l~-  550 (1269)
                      .++++|+.|++++|...         .+....|..+++|++|++++|++.++.+..|.++++|+.|++++|.+.  .++ 
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence            44444444444433221         222223555556666666666655555555555555555555555432  221 


Q ss_pred             CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc-cCCccc--CC
Q psy5670         551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL-TGNAIP--HS  627 (1269)
Q Consensus       551 ~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~-~~~~~~--~~  627 (1269)
                      ..|..+                    ...+|+.|++++|+++.+.+ ..+..+++|+.|++++|++++. +...+.  ++
T Consensus       373 ~~f~~~--------------------~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~  431 (680)
T 1ziw_A          373 ETFVSL--------------------AHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN  431 (680)
T ss_dssp             TTTGGG--------------------TTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred             hhhccc--------------------ccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence            111111                    01245555555555554433 1234566777888888877653 222332  47


Q ss_pred             ccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccc
Q psy5670         628 VENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNK  707 (1269)
Q Consensus       628 L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~  707 (1269)
                      |++|++++|+++++.+..|..+++|+.|++++|.++.+...       |.                              
T Consensus       432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------p~------------------------------  474 (680)
T 1ziw_A          432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-------PS------------------------------  474 (680)
T ss_dssp             CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-------SC------------------------------
T ss_pred             ccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-------Cc------------------------------
Confidence            88888888888888888899999999999999887642110       00                              


Q ss_pred             ccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeee
Q psy5670         708 ERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVID  787 (1269)
Q Consensus       708 ~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~  787 (1269)
                                                                                                      
T Consensus       475 --------------------------------------------------------------------------------  474 (680)
T 1ziw_A          475 --------------------------------------------------------------------------------  474 (680)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccc--------cccCCCCCCEEeCC
Q psy5670         788 CSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK--------TFNGLKELIILRLD  859 (1269)
Q Consensus       788 c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~--------~f~~l~~L~~L~L~  859 (1269)
                          .+..      ..+++.|++++|+|+.+++..|.++++|++|++++|+++.+...        .|.++++|+.|+|+
T Consensus       475 ----~~~~------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~  544 (680)
T 1ziw_A          475 ----PFQP------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE  544 (680)
T ss_dssp             ----TTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred             ----cccc------CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence                0000      02357899999999999999999999999999999999988544        37899999999999


Q ss_pred             CCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c--ccCCccEEEeeCCccccc
Q psy5670         860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H--LSSQIQSITLTSNPWSCD  936 (1269)
Q Consensus       860 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~  936 (1269)
                      +|+++.+++.+|.++++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++. +  .+++|+.+++++|||.||
T Consensus       545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            9999999999999999999999999999999999999999999999999999999998 6  578999999999999999


Q ss_pred             CCcHHHHHHHHHhccCCcCcc-CcceeccCCccce
Q psy5670         937 CDFTEKFRDYLQRSRSSVHDI-SQIRCMTGSEVGF  970 (1269)
Q Consensus       937 C~~~~~~~~w~~~~~~~i~~~-~~~~C~~p~~~~~  970 (1269)
                      |+...||++|++.....+.+. .+++|..|+..+|
T Consensus       625 c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g  659 (680)
T 1ziw_A          625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG  659 (680)
T ss_dssp             CCCCSSEECCSSCC---------------------
T ss_pred             CccHHHHHHHHHhcCcccccccCCcEECCchHHCC
Confidence            995468999998776666664 5789999998866

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-57  Score=578.41  Aligned_cols=622  Identities=21%  Similarity=0.293  Sum_probs=352.9

Q ss_pred             EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCce
Q psy5670          61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKT  140 (1269)
Q Consensus        61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~  140 (1269)
                      .+.|.+..++.+|.     . .+.++++|+|++|.    ...+++.+|+++++|++|+|++|.++.+.+++|.++++|++
T Consensus         8 ~~~cs~~~L~~ip~-----~-~~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            8 VADCSHLKLTQVPD-----D-LPTNITVLNLTHNQ----LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             EEECCSSCCSSCCS-----C-SCTTCSEEECCSSC----CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             eeECCCCCcccccc-----c-cCCCCcEEECCCCC----CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            57888888888762     1 24667777777777    45666666777777777777777766666555555555555


Q ss_pred             eecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCC
Q psy5670         141 LTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG  220 (1269)
Q Consensus       141 L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l  220 (1269)
                      |+++++..      ..+.+.+| +++++|++|++++|.+..+++..|+++++|++|++++|++.+..+..+..      +
T Consensus        78 L~L~~n~l------~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l  144 (680)
T 1ziw_A           78 LNLQHNEL------SQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ------L  144 (680)
T ss_dssp             EECCSSCC------CCCCTTTT-TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC------C
T ss_pred             EECCCCcc------CccChhhh-ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc------c
Confidence            55543322      12333344 55555555555555555555444555555555555555554443333321      3


Q ss_pred             CcccEEEcCCCCCCccCcccCC--CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccc---cCCCCC
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFS--RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF---NQSRDL  295 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f---~~l~~L  295 (1269)
                      ++|++|++++|.++.+++..+.  .+++|++|++++|.++++.+..|..+++|+.|+++++.+.......+   ...++|
T Consensus       145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L  224 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI  224 (680)
T ss_dssp             TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred             ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence            4455555555555444433322  23445555555554444444444444444554444443321000000   012344


Q ss_pred             cEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEcc
Q psy5670         296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE  375 (1269)
Q Consensus       296 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  375 (1269)
                      +.|++++|.+.++.+..|.+++.                        ++|+.|++++|.+.++.+..|..+++|++|+++
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLKW------------------------TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE  280 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGGG------------------------SCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cEEEccCCcccccChhHhhccCc------------------------CCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence            44444444444444444443322                        125555555555555444445555555555555


Q ss_pred             CCcccccccccccCCCCCcEEEccCCccc---------ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEc
Q psy5670         376 NNQIESIHRNTFASLSNLHTLIMSNNKLK---------RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL  446 (1269)
Q Consensus       376 ~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  446 (1269)
                      +|.+..+.+..|..+++|+.|++++|...         .+....|..+++|++|++++|.+.++.+..|.++++|++|++
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  360 (680)
T 1ziw_A          281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL  360 (680)
T ss_dssp             SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred             CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence            55555544444555555555555443222         222234555666666666666666666666666666666666


Q ss_pred             cCCCCC--Cchh-hhc--CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCC
Q psy5670         447 NGNKLT--EIPK-VLR--NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASN  520 (1269)
Q Consensus       447 s~n~l~--~lp~-~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n  520 (1269)
                      ++|.+.  .++. .+.  ..++|+.|++++|.++++.+..|..+++|+.|++++|.+ +.++...|.++++|++|++++|
T Consensus       361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence            666432  2222 121  124566666666666666666666666666666666666 3455555666666666666666


Q ss_pred             ccccccccccCCCCCccEEEccccccc---ccCCcCCCCCCCcEEEccCCcCcccccccc--CCCccEEECCCCCccccc
Q psy5670         521 KIQKVEAGTFDNNSNLVAIRLDGNYLT---DIGGLFPKLPNLVWLNISENLLEWFDYALI--PADLQWLDIHGNQISELG  595 (1269)
Q Consensus       521 ~i~~~~~~~~~~~~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L~~L~Ls~n~l~~~~  595 (1269)
                      ++.++.+..|..+++|+.|++++|.+.   .+|..|..+++|+.|++++|+++.++...+  .++|++|++++|+++.++
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence            666666666666666666666666654   335556666666666666666665543322  245666777777666543


Q ss_pred             c-------cccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670         596 N-------YFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN  666 (1269)
Q Consensus       596 ~-------~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~  666 (1269)
                      .       ...+..+++|+.|++++|+++.++...+.  .+|+.|+|++|+++++.+..|..+++|+.|+|++|+|++++
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            2       12256778999999999999988875554  58999999999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCCCceEecCCccccccCC-hhHHhhccccccCCCcccc-cCccccccccccCCCccccccc
Q psy5670         667 QTALRISPLPSHKNIPDFYIGENPFQCDCNM-QWLQSYSVNKERNKPNLVD-LDTVTCKLLYNRANPAILLKEA  738 (1269)
Q Consensus       667 ~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~-~~l~~~~~~~~~~~~~~~~-l~~~~c~~~~~~~~~~~~l~~~  738 (1269)
                      +..+.    +..++++.+++++|||.|+|.+ .|+..|-..   ....+.+ ...+.|..+..  ..+.++.++
T Consensus       601 ~~~~~----~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~---~~~~~~~~~~~~~C~~p~~--~~g~~l~~~  665 (680)
T 1ziw_A          601 KKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINE---THTNIPELSSHYLCNTPPH--YHGFPVRLF  665 (680)
T ss_dssp             HHHHH----HHHTTCSEEECTTCCCCBCCCCCSSEECCSSC---C-----------------------------
T ss_pred             hhHhc----ccccccCEEEccCCCcccCCccHHHHHHHHHh---cCcccccccCCcEECCchH--HCCCccccc
Confidence            86552    1235788999999999999996 888765321   1122222 24567765432  334444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-55  Score=569.32  Aligned_cols=666  Identities=22%  Similarity=0.189  Sum_probs=429.7

Q ss_pred             ccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCC
Q psy5670         122 CKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN  201 (1269)
Q Consensus       122 ~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n  201 (1269)
                      |.+..+.-+    -..++.|+|+++...  +. ....+.++ .++++|+.++++.+.+..+|.. |+.+++|++|+|++|
T Consensus        40 C~w~gv~C~----~~~v~~L~L~~~~l~--g~-~~~l~~~l-~~L~~L~~l~~~~~~~~~l~~~-~~~l~~L~~L~Ls~n  110 (768)
T 3rgz_A           40 CTFDGVTCR----DDKVTSIDLSSKPLN--VG-FSAVSSSL-LSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN  110 (768)
T ss_dssp             GGSTTEEEE----TTEEEEEECTTSCCC--EE-HHHHHHHT-TTCTTCCEEECTTSCEEECCCC-CCCCTTCCEEECCSS
T ss_pred             cCCcceEEC----CCcEEEEECCCCCcC--Cc-cCccChhH-hccCcccccCCcCCCcCCCchh-hccCCCCCEEECCCC
Confidence            555554332    257888888654321  10 01124567 7888888888888877665554 688888888888888


Q ss_pred             CCCCCCcc--ccCCCCcccCCCcccEEEcCCCCCCccCcccC-CCCCCCCEEEccCCCCcccchhh---hcCCCCCcEEE
Q psy5670         202 KLSNVATF--SFSNYDTARCGINLRVLDLSNNSFDSLPAEGF-SRLSRLQELYLQGNILTFLADHA---LDGLNSLTVLN  275 (1269)
Q Consensus       202 ~l~~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~  275 (1269)
                      .+.+..+.  .+      ..+++|++|+|++|.++...+..+ .++++|++|++++|.+++..+..   +.++++|++|+
T Consensus       111 ~l~~~~~~~~~l------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~  184 (768)
T 3rgz_A          111 SLSGPVTTLTSL------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA  184 (768)
T ss_dssp             EEEEEGGGGGGG------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred             cCCCcCCChHHH------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence            87754333  33      346788888888888775544433 77888888888888888777665   67788888888


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCC
Q psy5670         276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM  355 (1269)
Q Consensus       276 Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l  355 (1269)
                      +++|.+....+  +..+++|++|++++|.+.+..+. ++++++|++|++++|.+.+  ..+..+.++++|++|++++|.+
T Consensus       185 Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l  259 (768)
T 3rgz_A          185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQF  259 (768)
T ss_dssp             CCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSSCC
T ss_pred             CCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEECCCCcc
Confidence            88887765544  25677778888877777776555 6777777777777777765  2355667777777777777777


Q ss_pred             cccCchhhcCCCCCcEEEccCCccc-ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCC-ccChh
Q psy5670         356 NKLDSSIFKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEEN  433 (1269)
Q Consensus       356 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~  433 (1269)
                      .+..+..  .+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .++..
T Consensus       260 ~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~  337 (768)
T 3rgz_A          260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD  337 (768)
T ss_dssp             EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred             cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence            6544432  5667777777777766 333332233466777777777776666666666677777777776666 33334


Q ss_pred             hhcCCCCCcEEEccCCCCC-CchhhhcCCC-CCcEEECCCCCCCccChhhhhc--cccCCeeeccCCcCCCCChhhhcCC
Q psy5670         434 ALKNSTSLQDFHLNGNKLT-EIPKVLRNLH-SLKTLDLGDNLITEINNLSLNS--LHQLAGLRLTENNISNISKGVFEKL  509 (1269)
Q Consensus       434 ~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~f~~l  509 (1269)
                      .+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+++..+..+..  +++|+.|++++|.+....+..|.++
T Consensus       338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  417 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC  417 (768)
T ss_dssp             HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred             HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence            4666666666666666665 5565555554 6666666666666554444433  4556666666666643333345556


Q ss_pred             CCCCEEEcCCCccccccccccCCCCCccEEEccccccc-ccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCC
Q psy5670         510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHG  588 (1269)
Q Consensus       510 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~  588 (1269)
                      ++|++|++++|++++..+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++.                 
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------  480 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-----------------  480 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-----------------
Confidence            66666666666666555555555566666666666555 334444455555555554444431                 


Q ss_pred             CCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670         589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN  666 (1269)
Q Consensus       589 n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~  666 (1269)
                          .++.  .+..+++|++|++++|++++..+..+.  ++|++|+|++|++++..|..+..+++|+.|||++|++++.-
T Consensus       481 ----~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          481 ----EIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             ----CCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             ----cCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence                1111  234566777888888877765554443  46777777777777777777777777777777777776422


Q ss_pred             ccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccc
Q psy5670         667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCE  746 (1269)
Q Consensus       667 ~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~  746 (1269)
                      +..+                             ......         .....          .....+..+.....   
T Consensus       555 p~~~-----------------------------~~~~~~---------~~~~~----------~~~~~~~~~~~~~~---  583 (768)
T 3rgz_A          555 PAAM-----------------------------FKQSGK---------IAANF----------IAGKRYVYIKNDGM---  583 (768)
T ss_dssp             CGGG-----------------------------GTTTTC---------BCCST----------TCSCEEEEEECCSC---
T ss_pred             ChHH-----------------------------hcccch---------hhhhc----------cccccccccccccc---
Confidence            2111                             110000         00000          00000000000000   


Q ss_pred             cccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCC
Q psy5670         747 YETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR  826 (1269)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~  826 (1269)
                                             ..  .|.    ....                      .+.+     ..+.+..+..+
T Consensus       584 -----------------------~~--~~~----~~~~----------------------~~~~-----~~~~~~~~~~l  607 (768)
T 3rgz_A          584 -----------------------KK--ECH----GAGN----------------------LLEF-----QGIRSEQLNRL  607 (768)
T ss_dssp             -----------------------CT--TCC----SSEE----------------------EEEC-----TTCCGGGGGGG
T ss_pred             -----------------------cc--ccc----cccc----------------------cccc-----ccccchhhhcc
Confidence                                   00  000    0000                      0111     11112223334


Q ss_pred             CCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEec
Q psy5670         827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL  906 (1269)
Q Consensus       827 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L  906 (1269)
                      ..++.+++..|.+....+..|..+++|+.|||++|++++..|..|.++++|+.|+|++|+|++..|..|+++++|++|||
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL  687 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL  687 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence            55666788888888888999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             cCccceeeecc-c-ccCCccEEEeeCCcccccCCc
Q psy5670         907 DHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDF  939 (1269)
Q Consensus       907 ~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~  939 (1269)
                      ++|++++..|. + .+++|+.|++++|++...-+.
T Consensus       688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999987777 6 889999999999999987663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.5e-54  Score=539.78  Aligned_cols=562  Identities=22%  Similarity=0.255  Sum_probs=388.5

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC
Q psy5670         273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY  352 (1269)
Q Consensus       273 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~  352 (1269)
                      .++.++..++.+|...   .+.+++|++++|.++++.+..|.++++|++|++++|.+..  +.+..|.++++|++|++++
T Consensus        16 ~~~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             EEECTTSCCSSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTT
T ss_pred             eEECCCCCcccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce--eChhhccCccccCeeeCCC
Confidence            4555555566665433   3356666666666666666666666666666666666655  4455566666666666666


Q ss_pred             CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccCh
Q psy5670         353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE  432 (1269)
Q Consensus       353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  432 (1269)
                      |.+..+.+..|.++++|++|++++|.++.+.+..|..+++|++|++++|++.++....+..+++|+.|++++|.+.++.+
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            66666666666666666666666666666655566666667777777766666544444456677777777777776666


Q ss_pred             hhhcCCCCCc--EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccC-----CcCCCCChhh
Q psy5670         433 NALKNSTSLQ--DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-----NNISNISKGV  505 (1269)
Q Consensus       433 ~~~~~l~~L~--~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~  505 (1269)
                      ..++.+++|+  .|++++|.+..++.......+|++|++++|..   .+..+..+..+....+.-     .....++...
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence            6666677776  66777777666655444445677777776651   122333333332222211     1223444555


Q ss_pred             hcCCC--CCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcccccccc--CCCc
Q psy5670         506 FEKLS--VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI--PADL  581 (1269)
Q Consensus       506 f~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L  581 (1269)
                      |.++.  +|+.|++++|.++++.+..|..+++|+.|++++|.++.+|..+..+++|+.|++++|.++......+  .++|
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  327 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL  327 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred             hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence            55554  6778888888888877777888888888888888888887777777888888888877765432111  2356


Q ss_pred             cEEECCCCCcc-cccccccccccccccEEEcCCCcccccc--CCcc--cCCccEEEccCcccccccCCccCCCCCccEEE
Q psy5670         582 QWLDIHGNQIS-ELGNYFEIESQLRLTYFDASSNKLTELT--GNAI--PHSVENLFLTNNLISKVQPYTFFMKPNLTRVD  656 (1269)
Q Consensus       582 ~~L~Ls~n~l~-~~~~~~~l~~~~~L~~LdLs~N~l~~~~--~~~~--~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~Ld  656 (1269)
                      ++|++++|.+. .++. ..+..+++|++|++++|+++++.  +..+  .++|++|++++|+++++.|..|..+++|+.|+
T Consensus       328 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (606)
T 3t6q_A          328 THLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD  406 (606)
T ss_dssp             SEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred             CEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence            66666666554 2221 12345566666666666666553  2222  23566666666666666666666666666666


Q ss_pred             cCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccc
Q psy5670         657 LVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLK  736 (1269)
Q Consensus       657 Ls~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~  736 (1269)
                      +++|+++...+...                                                                  
T Consensus       407 l~~n~l~~~~~~~~------------------------------------------------------------------  420 (606)
T 3t6q_A          407 LAFTRLKVKDAQSP------------------------------------------------------------------  420 (606)
T ss_dssp             CTTCCEECCTTCCT------------------------------------------------------------------
T ss_pred             CCCCcCCCcccchh------------------------------------------------------------------
Confidence            66665543211000                                                                  


Q ss_pred             ccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCC
Q psy5670         737 EAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIP  816 (1269)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~  816 (1269)
                                                                              +..      ...+++|++++|.++
T Consensus       421 --------------------------------------------------------~~~------l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          421 --------------------------------------------------------FQN------LHLLKVLNLSHSLLD  438 (606)
T ss_dssp             --------------------------------------------------------TTT------CTTCCEEECTTCCCB
T ss_pred             --------------------------------------------------------hhC------cccCCEEECCCCccC
Confidence                                                                    000      023578899999999


Q ss_pred             CcCCCcCCCCCCccEEEccCcCcccc---ccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChh
Q psy5670         817 VVGSHSFIGRKKLQILFLNSSHVETI---HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR  893 (1269)
Q Consensus       817 ~l~~~~f~~~~~L~~L~l~~n~i~~i---~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~  893 (1269)
                      .+.+..|.++++|+.|++++|+++..   .+..|..+++|+.|+|++|+++.+.+.+|.++++|++|+|++|+|+.+++.
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            88888899999999999999999873   336799999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcccee
Q psy5670         894 TFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFT  971 (1269)
Q Consensus       894 ~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~  971 (1269)
                      .|..+++| +|+|++|+++++++. + .+++|+.+++++|||.|+|+. .||..|++.....+.+...++|.+|+..+|.
T Consensus       519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~  596 (606)
T 3t6q_A          519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN-IYFLEWYKENMQKLEDTEDTLCENPPLLRGV  596 (606)
T ss_dssp             GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG-HHHHHHHHHCGGGEECGGGCBEEESGGGTTC
T ss_pred             HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc-HHHHHHHHhCcccccCCCCCeeCCchHhCCC
Confidence            99999999 999999999999998 6 789999999999999999996 6999999987677777788999999988764


Q ss_pred             ee
Q psy5670         972 IM  973 (1269)
Q Consensus       972 ~~  973 (1269)
                      .+
T Consensus       597 ~l  598 (606)
T 3t6q_A          597 RL  598 (606)
T ss_dssp             BG
T ss_pred             ee
Confidence            33

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.2e-52  Score=524.75  Aligned_cols=562  Identities=22%  Similarity=0.261  Sum_probs=357.7

Q ss_pred             CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670         248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN  327 (1269)
Q Consensus       248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  327 (1269)
                      ++++.+++.++.++.. +.  ++|++|++++|+++.+++..|.++++|++|++++|.++++.+..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            4566666666666542 21  56677777777776666666666777777777777666666666666677777777766


Q ss_pred             CCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCccccc
Q psy5670         328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRI  406 (1269)
Q Consensus       328 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~  406 (1269)
                      .+.+  +.+..|.++++|++|++++|.+.++++..++++++|++|++++|.+..+. +..|.++++|+.|++++|+++++
T Consensus        91 ~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           91 PIQS--FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCC--CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cccc--cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            6665  44556666666777777666666666555666666666666666666432 44566666666666666666666


Q ss_pred             CcccccCCCCCC----EEEccCCCCCccChhhhcCCCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChh
Q psy5670         407 ESNSLDSLTALS----VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNL  480 (1269)
Q Consensus       407 ~~~~~~~l~~L~----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~  480 (1269)
                      .+..++.+++|+    .|++++|.+.++.+..+... +|+.|++++|.+.  .+|..+..++.|+.+++..+.+....  
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--  245 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--  245 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--
Confidence            555555544443    56666666666665555444 5666666666654  34455566666666555433222110  


Q ss_pred             hhhccccCCeeeccCCcCCCCChhhhcCCC--CCCEEEc-CCCccccccccccCCCCCccEEEcccccccccCCcCCCCC
Q psy5670         481 SLNSLHQLAGLRLTENNISNISKGVFEKLS--VLTILNL-ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLP  557 (1269)
Q Consensus       481 ~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~--~L~~L~L-s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~  557 (1269)
                                      .+..+....+.++.  .++.+++ ..|.+.+..+. +..+++|+.|++++|.+..++ .+..++
T Consensus       246 ----------------~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~  307 (606)
T 3vq2_A          246 ----------------NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHF  307 (606)
T ss_dssp             ----------------CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTC
T ss_pred             ----------------cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccc
Confidence                            00111122222222  2233333 33444444333 444555555555555555444 444445


Q ss_pred             CCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc--CCcc--cCCccEEEc
Q psy5670         558 NLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT--GNAI--PHSVENLFL  633 (1269)
Q Consensus       558 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~--~~~~--~~~L~~L~L  633 (1269)
                      +|+.|++++|.++.++.. -.++|+.|++++|+.....   .+..+++|++|++++|+++++.  +..+  .++|++|++
T Consensus       308 ~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L  383 (606)
T 3vq2_A          308 KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL  383 (606)
T ss_dssp             CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred             cCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence            555555555544433321 2223444444444221111   1234456666666666665542  1111  135666666


Q ss_pred             cCcccccccCCccCCCCCccEEEcCCCCcccccc-cccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCC
Q psy5670         634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ-TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKP  712 (1269)
Q Consensus       634 s~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~-~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~  712 (1269)
                      ++|.++++. ..|..+++|+.|++++|++.++.+ ..+                                          
T Consensus       384 ~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------  420 (606)
T 3vq2_A          384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF------------------------------------------  420 (606)
T ss_dssp             CSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTT------------------------------------------
T ss_pred             CCCccccch-hhccCCCCCCeeECCCCccCCccChhhh------------------------------------------
Confidence            666655543 456666666666666665554221 000                                          


Q ss_pred             cccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCC
Q psy5670         713 NLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGG  792 (1269)
Q Consensus       713 ~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~  792 (1269)
                                                                                                      
T Consensus       421 --------------------------------------------------------------------------------  420 (606)
T 3vq2_A          421 --------------------------------------------------------------------------------  420 (606)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccc
Q psy5670         793 YDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEF  871 (1269)
Q Consensus       793 l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f  871 (1269)
                       ..+      ..+++|++++|.++.+.+..|.++++|+.|++++|+++. +.+..|..+++|+.|+|++|+++.+.+..|
T Consensus       421 -~~l------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          421 -LSL------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             -TTC------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             -hcc------ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence             000      234778888888888777888999999999999999997 678899999999999999999999999999


Q ss_pred             cCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeeccc-ccC-CccEEEeeCCcccccCCcHHHHHHHHHh
Q psy5670         872 ERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH-LSS-QIQSITLTSNPWSCDCDFTEKFRDYLQR  949 (1269)
Q Consensus       872 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~-~l~~l~l~~Np~~C~C~~~~~~~~w~~~  949 (1269)
                      .++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.++..+ .++ +|+.+++++|||.|+|+. .||.+|++.
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~-~~~~~~l~~  572 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH-QKFLQWVKE  572 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT-HHHHTTTTT
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc-HHHHHHHHc
Confidence            99999999999999999999999999999999999999999999984 554 699999999999999997 799999988


Q ss_pred             ccCCcCccCcceeccCCccce
Q psy5670         950 SRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       950 ~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      ....+.+..+++|..|+..++
T Consensus       573 ~~~~~~~~~~~~C~~p~~~~~  593 (606)
T 3vq2_A          573 QKQFLVNVEQMTCATPVEMNT  593 (606)
T ss_dssp             SSSSBSSGGGCCCC-------
T ss_pred             CcccccCCccceeCCChHhCC
Confidence            777777888999999998765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-51  Score=515.76  Aligned_cols=576  Identities=22%  Similarity=0.301  Sum_probs=330.2

Q ss_pred             CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670          30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ  109 (1269)
Q Consensus        30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~  109 (1269)
                      +.||..|.|...                 ...+.|....++.+|.      ..|..+++|+|++|.    .+.+++.+|+
T Consensus         2 ~~~~~~C~~~~~-----------------~~~~~c~~~~l~~iP~------~l~~~l~~L~Ls~n~----i~~~~~~~~~   54 (606)
T 3t6q_A            2 TSSDQKCIEKEV-----------------NKTYNCENLGLNEIPG------TLPNSTECLEFSFNV----LPTIQNTTFS   54 (606)
T ss_dssp             ----CCCEEEET-----------------TTEEECTTSCCSSCCT------TSCTTCCEEECTTCC----CSEECTTTST
T ss_pred             ccccCceecccC-----------------CceEECCCCCcccCcC------CCCCcCcEEEccCCc----cCcCChhHhc
Confidence            458888999742                 1168898888888762      124556666666666    3445555566


Q ss_pred             CCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCC
Q psy5670         110 TLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP  189 (1269)
Q Consensus       110 ~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~  189 (1269)
                      ++++|++|+|++|.+..+.+.+|                               .++++|++|+|++|.+..+++..|+.
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~-------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTF-------------------------------QSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTT-------------------------------TTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCccceEEECCCCccceeChhhc-------------------------------cCccccCeeeCCCCcccccChhhhcc
Confidence            66666666666655555544444                               44555555555555555554445555


Q ss_pred             CCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCC
Q psy5670         190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN  269 (1269)
Q Consensus       190 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  269 (1269)
                      +++|++|++++|+++.+.+..+..      +++|++|++++|.++.++...+..+++|++|++++|.++.+.+..|+.++
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHN------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTT------CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred             cccccEeeccccCcccCCcchhcc------CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence            555555555555555544433322      45566666666666655433344466666777766666666666666666


Q ss_pred             CCc--EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCc---cccCcccccCCC-
Q psy5670         270 SLT--VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE---EWVNAATFSGLH-  343 (1269)
Q Consensus       270 ~L~--~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~l~-  343 (1269)
                      +|+  .|++++|.+..+++..|.. .+|+.|++++|..   .+..+..+.++....+....+..   ..+....+.++. 
T Consensus       178 ~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~  253 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE  253 (606)
T ss_dssp             TCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred             ccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence            666  6677777766666665543 4667777766641   12233444443333222211111   001122222222 


Q ss_pred             -CccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q psy5670         344 -RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL  422 (1269)
Q Consensus       344 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  422 (1269)
                       +|+.|++++|.+.++++..|..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence             45555555555555555555555555555555555554443 2445555555555555555544444455555555555


Q ss_pred             cCCCCC-ccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC--hhhhhccccCCeeeccCCcCC
Q psy5670         423 DNNELE-YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN--NLSLNSLHQLAGLRLTENNIS  499 (1269)
Q Consensus       423 s~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~  499 (1269)
                      ++|.+. .+.+..+.                       .+++|++|++++|.+++..  +..+..+++|+.|++++|.+.
T Consensus       333 ~~n~~~~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          333 KGNTKRLELGTGCLE-----------------------NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             CSCSSCCBCCSSTTT-----------------------TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             CCCCcccccchhhhh-----------------------ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence            555444 22233344                       4445555555555544443  334455555555555555554


Q ss_pred             CCChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccCCcCcccccccc
Q psy5670         500 NISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALI  577 (1269)
Q Consensus       500 ~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  577 (1269)
                      .+++..|..+++|+.|++++|++.+..+ ..|..+++|+.|++++|.++.. +..+..+++|+.|++++|.++....   
T Consensus       390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---  466 (606)
T 3t6q_A          390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI---  466 (606)
T ss_dssp             EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE---
T ss_pred             cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc---
Confidence            4444455555666666666666555433 2355566666666666666543 3445556666666666665542100   


Q ss_pred             CCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEE
Q psy5670         578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRV  655 (1269)
Q Consensus       578 p~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~L  655 (1269)
                      |                 ....+..+++|++|++++|+++++.+..+.  ++|+.|+|++|++++..|..|..+++| .|
T Consensus       467 ~-----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          467 Q-----------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             C-----------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             c-----------------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            0                 001233456777777777777776655444  578899999999999989999999999 99


Q ss_pred             EcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCcccccccc
Q psy5670         656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLY  726 (1269)
Q Consensus       656 dLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~  726 (1269)
                      ++++|+++++++..+.     ..++++.+++++||+.|+|...|+..|-.   .....+.+...+.|..+.
T Consensus       529 ~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~c~~~~~~~w~~---~~~~~~~~~~~~~C~~p~  591 (606)
T 3t6q_A          529 NLASNHISIILPSLLP-----ILSQQRTINLRQNPLDCTCSNIYFLEWYK---ENMQKLEDTEDTLCENPP  591 (606)
T ss_dssp             ECCSSCCCCCCGGGHH-----HHHTSSEEECTTCCEECSGGGHHHHHHHH---HCGGGEECGGGCBEEESG
T ss_pred             ECcCCcccccCHhhcc-----cCCCCCEEeCCCCCccccCCcHHHHHHHH---hCcccccCCCCCeeCCch
Confidence            9999999998876653     34578899999999999999888776532   112234455677887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-48  Score=491.22  Aligned_cols=533  Identities=22%  Similarity=0.291  Sum_probs=439.5

Q ss_pred             CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670         167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR  246 (1269)
Q Consensus       167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  246 (1269)
                      ++|++|++++|.+..+++..|.++++|++|+|++|+++++.+..|..      +++|++|+|++|.++.+++..|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~------l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG------LHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc------hhhcCEeECCCCcccccChhhcCCccc
Confidence            78999999999999999888999999999999999999887766654      689999999999999998888999999


Q ss_pred             CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCCC----E
Q psy5670         247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLI----V  321 (1269)
Q Consensus       247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~  321 (1269)
                      |++|++++|.++.+.+..|+++++|++|++++|.+..+. +..|.++++|++|++++|.++++.+..|+.+++|+    .
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            999999999999988888999999999999999998643 56678999999999999999998888777766654    8


Q ss_pred             EECcCCCCCccccCcccccCCCCccEEEcCCCCCc-ccCchhhcCCCCCcEEEccCCcc------cccccccccCCC--C
Q psy5670         322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQI------ESIHRNTFASLS--N  392 (1269)
Q Consensus       322 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l------~~i~~~~f~~l~--~  392 (1269)
                      |++++|.+..  +....+... +|+.|++++|.+. ...+..+.+++.|+.+++..+.+      ..+....+..+.  .
T Consensus       186 L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          186 LDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             EECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             eeccCCCcce--eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence            9999999886  555566555 8999999999886 45566788899999888765433      223333344433  3


Q ss_pred             CcEEEc-cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670         393 LHTLIM-SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD  471 (1269)
Q Consensus       393 L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~  471 (1269)
                      ++.+++ ..+.+.+..+. +..+++|+.|++++|.+..+.  .+..+++|++|++++|.+..+|. + .+++|++|++++
T Consensus       263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~  337 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTM  337 (606)
T ss_dssp             EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEES
T ss_pred             Hhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCccccc-C-CCCccceeeccC
Confidence            556777 66777777766 889999999999999998876  78899999999999999999994 5 899999999999


Q ss_pred             CCCCccChhhhhccccCCeeeccCCcCCCCC--hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670         472 NLITEINNLSLNSLHQLAGLRLTENNISNIS--KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      |...+..  .+..+++|+.|++++|.+..++  +..+..+++|++|++++|.+++++ ..|..+++|+.|++++|.+..+
T Consensus       338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEEST
T ss_pred             CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCc
Confidence            9655433  5678999999999999997663  456899999999999999998876 7888999999999999999987


Q ss_pred             C--CcCCCCCCCcEEEccCCcCcccccccc--CCCccEEECCCCCccc--ccccccccccccccEEEcCCCccccccCCc
Q psy5670         550 G--GLFPKLPNLVWLNISENLLEWFDYALI--PADLQWLDIHGNQISE--LGNYFEIESQLRLTYFDASSNKLTELTGNA  623 (1269)
Q Consensus       550 ~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L~~L~Ls~n~l~~--~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~  623 (1269)
                      +  ..+..+++|+.|++++|.+.......+  .++|++|++++|.+++  ++.  .+..+++|+.|++++|+++++.+..
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hhccCCCCCEEECCCCcCCccChhh
Confidence            5  478899999999999999886543322  3589999999999986  333  4567889999999999999988765


Q ss_pred             cc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670         624 IP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ  701 (1269)
Q Consensus       624 ~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~  701 (1269)
                      +.  ++|++|+|++|+++++.|..|..+++|+.|+|++|+|+.++.. +.  .++  ++++.+++++||+.|+|.+.|+.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~--~l~--~~L~~l~l~~N~~~c~c~~~~~~  567 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQ--HFP--KSLAFFNLTNNSVACICEHQKFL  567 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GG--GSC--TTCCEEECCSCCCCCSSTTHHHH
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hh--hhc--ccCcEEEccCCCcccCCccHHHH
Confidence            54  6899999999999999999999999999999999999988875 21  111  25889999999999999999988


Q ss_pred             hhccccccCCCcccccCcccccccc
Q psy5670         702 SYSVNKERNKPNLVDLDTVTCKLLY  726 (1269)
Q Consensus       702 ~~~~~~~~~~~~~~~l~~~~c~~~~  726 (1269)
                      .+-.   .....+.+.+.+.|..+.
T Consensus       568 ~~l~---~~~~~~~~~~~~~C~~p~  589 (606)
T 3vq2_A          568 QWVK---EQKQFLVNVEQMTCATPV  589 (606)
T ss_dssp             TTTT---TSSSSBSSGGGCCCC---
T ss_pred             HHHH---cCcccccCCccceeCCCh
Confidence            7643   112234455667786543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.3e-47  Score=484.88  Aligned_cols=563  Identities=21%  Similarity=0.238  Sum_probs=352.6

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC
Q psy5670         273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY  352 (1269)
Q Consensus       273 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~  352 (1269)
                      ..+.++-+++.+|.++   .+++++|+|++|.++++++..|.++++|++|+|++|.++.  +.+.+|.++++|++|+|++
T Consensus        35 ~~~c~~~~l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EEECTTSCCSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCCcCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccC
Confidence            3444444566666543   3456666666666666666666666667777776666665  4555666666677777776


Q ss_pred             CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccC
Q psy5670         353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIE  431 (1269)
Q Consensus       353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~  431 (1269)
                      |+++.+++..|.++++|++|++++|.++.+++..|+++++|++|++++|.+..+. +..+..+++|++|++++|++.++.
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            6666666666666777777777777776666666666777777777777666542 445566667777777777776666


Q ss_pred             hhhhcCCCC----CcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc-cChhhhhccccCCeeeccCCcC------CC
Q psy5670         432 ENALKNSTS----LQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE-INNLSLNSLHQLAGLRLTENNI------SN  500 (1269)
Q Consensus       432 ~~~~~~l~~----L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l------~~  500 (1269)
                      +..+..+.+    +..++++.|.+..++........+..+++.+|.... +....+..+..++...+..+..      ..
T Consensus       190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            555544332    235666666666555444444445566666554332 2223344444444444322211      11


Q ss_pred             CChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCC
Q psy5670         501 ISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD  580 (1269)
Q Consensus       501 i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~  580 (1269)
                      .....+..+..+....+..+....                    ....+...+..+.+++.+++.++.+...........
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  329 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDY--------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG  329 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCS--------------------CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCC
T ss_pred             ccccccccccchhhhhhhhhhhcc--------------------cccchhhhhhhhcccccccccccccccccccccchh
Confidence            111222223333333322221110                    011122233334445555555554443332233334


Q ss_pred             ccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccc--cCCccCCCCCccEEEcC
Q psy5670         581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV--QPYTFFMKPNLTRVDLV  658 (1269)
Q Consensus       581 L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~--~~~~f~~~~~L~~LdLs  658 (1269)
                      ++.|++++|.+..+..    ..+..|+.++++.|.+.......-.++|+.|++++|.+...  .+..+..+.+|+.++++
T Consensus       330 L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~  405 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS  405 (635)
T ss_dssp             CSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred             hhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence            5555555555444332    12344555556555555443333334566666666655432  23334455666666666


Q ss_pred             CCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccccc
Q psy5670         659 GNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEA  738 (1269)
Q Consensus       659 ~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~  738 (1269)
                      .|.+..+....      ....++..+++.+|....                                            .
T Consensus       406 ~~~~~~~~~~~------~~l~~L~~l~l~~~~~~~--------------------------------------------~  435 (635)
T 4g8a_A          406 FNGVITMSSNF------LGLEQLEHLDFQHSNLKQ--------------------------------------------M  435 (635)
T ss_dssp             SCSEEEECSCC------TTCTTCCEEECTTSEEES--------------------------------------------T
T ss_pred             ccccccccccc------cccccccchhhhhccccc--------------------------------------------c
Confidence            66655433211      122223333322211000                                            0


Q ss_pred             CCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCc
Q psy5670         739 HSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVV  818 (1269)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l  818 (1269)
                                                    .+.                   ..+..      ...++.++++.|.+..+
T Consensus       436 ------------------------------~~~-------------------~~~~~------l~~l~~l~ls~n~l~~~  460 (635)
T 4g8a_A          436 ------------------------------SEF-------------------SVFLS------LRNLIYLDISHTHTRVA  460 (635)
T ss_dssp             ------------------------------TSS-------------------CTTTT------CTTCCEEECTTSCCEEC
T ss_pred             ------------------------------ccc-------------------ccccc------ccccccccccccccccc
Confidence                                          000                   00000      12357889999999999


Q ss_pred             CCCcCCCCCCccEEEccCcC-ccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhc
Q psy5670         819 GSHSFIGRKKLQILFLNSSH-VETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS  897 (1269)
Q Consensus       819 ~~~~f~~~~~L~~L~l~~n~-i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~  897 (1269)
                      .+..|.++++|+.|++++|+ +..+.+..|..+++|++|+|++|+|+++++.+|.++++|++|+|++|+|+++++..|.+
T Consensus       461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  540 (635)
T 4g8a_A          461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  540 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred             cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence            99999999999999999997 55678899999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceEeccCccceeeecc-c-cc-CCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670         898 LTHLKVLQLDHNRITSFAVW-H-LS-SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       898 l~~L~~L~L~~N~l~~~~~~-~-~~-~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      +++|++|+|++|+|+++++. + .+ ++|+.|+|++|||.|||++ .||++|+++....+.+..+++|++|+..+|
T Consensus       541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~-~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g  615 (635)
T 4g8a_A          541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERMECATPSDKQG  615 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG-HHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred             CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc-HHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence            99999999999999999998 6 44 7899999999999999996 799999998877888888999999999876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-47  Score=496.49  Aligned_cols=534  Identities=23%  Similarity=0.290  Sum_probs=340.4

Q ss_pred             EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEecccc-CCCCChhhccCCccCc
Q psy5670          61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK-IGNLSAGSFRGLRKLK  139 (1269)
Q Consensus        61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~-i~~i~~~~f~~l~~L~  139 (1269)
                      .+.|...+++.+|      . .|.++++|+|++|.    .+.+.+.+|.++++|++|+|++|. +..+++++|.++++|+
T Consensus         8 ~~dcs~~~L~~vP------~-lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            8 IAFYRFCNLTQVP------Q-VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEESCCCSSCCC------S-SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             EEEccCCCCCCCC------C-CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            7889888998887      2 46778888888887    456666677888888888887773 3455555555555555


Q ss_pred             eeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc-CC-cccCCCCCCCcEEECCCCCCCCCCcc-ccCCCCc
Q psy5670         140 TLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT-LP-DAIFCPLQSLSYLNLTQNKLSNVATF-SFSNYDT  216 (1269)
Q Consensus       140 ~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~-l~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~  216 (1269)
                      +|+|++|.+      ..+.|..| .++++|++|+|++|.+.+ ++ ...|.++++|++|+|++|.+.+.... .|     
T Consensus        77 ~L~Ls~N~l------~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-----  144 (844)
T 3j0a_A           77 ILDLGSSKI------YFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF-----  144 (844)
T ss_dssp             EEECTTCCC------CEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-----
T ss_pred             EEECCCCcC------cccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH-----
Confidence            555543322      12334445 555555555555555543 11 12344555555555555554443221 12     


Q ss_pred             ccCCCcccEEEcCCCCCCccCcccCCCC--CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCC
Q psy5670         217 ARCGINLRVLDLSNNSFDSLPAEGFSRL--SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRD  294 (1269)
Q Consensus       217 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~  294 (1269)
                       ..+++|++|+|++|.++.+.+..+..+  ++|+.|++++|.+....+..+..+++                 .|.. ..
T Consensus       145 -~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~  205 (844)
T 3j0a_A          145 -GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MV  205 (844)
T ss_dssp             -GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CC
T ss_pred             -hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-Cc
Confidence             223445555555554444444444433  44444455444444433333333222                 0000 12


Q ss_pred             CcEEEeeCCcccccCcccccC---CCCCCEEECcCC---------CCCccccCcccccCC--CCccEEEcCCCCCcccCc
Q psy5670         295 LKEVYLQNNSINVLAPGIFNV---LTQLIVLDLSNN---------ELTEEWVNAATFSGL--HRLVVLNIAYNKMNKLDS  360 (1269)
Q Consensus       295 L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n---------~l~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~  360 (1269)
                      |+.|++++|.+++..+..+..   .++++.|.++.+         .+..  .....|.++  ++|+.|++++|.+..+.+
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~--~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT--GGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC--CChhhhhccccCCccEEECCCCcccccCh
Confidence            555555555444333333222   134555554422         2222  223344444  678889998888888888


Q ss_pred             hhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC
Q psy5670         361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS  440 (1269)
Q Consensus       361 ~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  440 (1269)
                      ..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++.+..|.++++|+.|++++|.+..+.+..|.++++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK  363 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence            88888889999999999888888888888889999999999888888888888899999999999888888888888899


Q ss_pred             CcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChh-hhcCCCCCCEEEcCC
Q psy5670         441 LQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEKLSVLTILNLAS  519 (1269)
Q Consensus       441 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~f~~l~~L~~L~Ls~  519 (1269)
                      |+.|++++|.++.++.    +++|+.|++++|+++.++..    ..+++.|++++|.+..++.. .+.++++|+.|+|++
T Consensus       364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  435 (844)
T 3j0a_A          364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ  435 (844)
T ss_dssp             CCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred             CCEEECCCCCCCcccC----CCCcchhccCCCCccccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence            9999999998887654    67889999999988876542    46788999999999776542 356889999999999


Q ss_pred             Ccccccccc-ccCCCCCccEEEcccccccccC------CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcc
Q psy5670         520 NKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG------GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQIS  592 (1269)
Q Consensus       520 n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~------~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~  592 (1269)
                      |+++++... .+..+++|+.|++++|.++.++      ..|.++++|+.|+                             
T Consensus       436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~-----------------------------  486 (844)
T 3j0a_A          436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY-----------------------------  486 (844)
T ss_dssp             CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC-----------------------------
T ss_pred             CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE-----------------------------
Confidence            999876543 4566889999999999987543      2233344444444                             


Q ss_pred             cccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccc
Q psy5670         593 ELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL  670 (1269)
Q Consensus       593 ~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~  670 (1269)
                                        |++|+++++++..+.  ++|+.|+|++|+++++.+..+.  ++|+.|||++|+|+++++..+
T Consensus       487 ------------------Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~  546 (844)
T 3j0a_A          487 ------------------LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF  546 (844)
T ss_dssp             ------------------CCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred             ------------------CCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence                              444444433333222  3455555555555555444443  556666666666666555433


Q ss_pred             ccccCCCCCCCCceEecCCccccccCChhHHhh
Q psy5670         671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY  703 (1269)
Q Consensus       671 ~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~  703 (1269)
                              .++..+++++|||.|+|.+.|+..+
T Consensus       547 --------~~L~~l~l~~Np~~C~c~~~~f~~~  571 (844)
T 3j0a_A          547 --------VSLSVLDITHNKFICECELSTFINW  571 (844)
T ss_dssp             --------SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred             --------CCcCEEEecCCCcccccccHHHHHH
Confidence                    2466788999999999999988765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-46  Score=467.69  Aligned_cols=537  Identities=22%  Similarity=0.271  Sum_probs=336.7

Q ss_pred             EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670         249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE  328 (1269)
Q Consensus       249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  328 (1269)
                      .++.++..++.++. .+  .++++.|++++|+++.+++..|..+++|++|++++|.++++.+..|.++++|++|++++|.
T Consensus        11 ~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           11 TYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            34444444555443 12  1356666666666666665556666666666666666666655566666666666666666


Q ss_pred             CCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCcccccC
Q psy5670         329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIE  407 (1269)
Q Consensus       329 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~  407 (1269)
                      +..  +.+..|.++++|++|++++|.+..++...++.+++|++|++++|.++.+. +..|.++++|+.|++++|+++++.
T Consensus        88 l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           88 IQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCc--cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            554  33455666666666666666666555544556666666666666655432 344555666666666666665555


Q ss_pred             cccccCCCCC----CEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChhh
Q psy5670         408 SNSLDSLTAL----SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNLS  481 (1269)
Q Consensus       408 ~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~  481 (1269)
                      +..+..+++|    +.|++++|.+.++.+..+... +|+.|++++|...  .++..+..++.++.+.+....+...    
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----  240 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----  240 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC----
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc----
Confidence            5555555555    556666666655555555443 4556655555322  3344444455554444322111100    


Q ss_pred             hhccccCCeeeccCCcCCCCChhhhcCCCC--CCEEEcCCC-ccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670         482 LNSLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN  558 (1269)
Q Consensus       482 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~--L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~  558 (1269)
                                    ..+..++...|.++.+  ++.++++++ .+.+..+..|..+++|+.|++++|.++.+|..+..+ +
T Consensus       241 --------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~  305 (570)
T 2z63_A          241 --------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-G  305 (570)
T ss_dssp             --------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-C
T ss_pred             --------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-C
Confidence                          0112222233333332  455666665 555666666777777777777777777777666666 7


Q ss_pred             CcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCccc
Q psy5670         559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI  638 (1269)
Q Consensus       559 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i  638 (1269)
                      |+.|++++|.+..++...                          +++|+.|++++|.+.+..+..-.++|+.|++++|++
T Consensus       306 L~~L~l~~n~~~~l~~~~--------------------------l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          306 WQHLELVNCKFGQFPTLK--------------------------LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             CSEEEEESCBCSSCCBCB--------------------------CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred             ccEEeeccCcccccCccc--------------------------ccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence            777777777666443321                          233444444444443333222233555555555555


Q ss_pred             cccc--CCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccc
Q psy5670         639 SKVQ--PYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVD  716 (1269)
Q Consensus       639 ~~~~--~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~  716 (1269)
                      ++..  +..+..+++|+.|++++|+++.++.. +     ..+.                                     
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-----~~l~-------------------------------------  396 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-----LGLE-------------------------------------  396 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-----ETCT-------------------------------------
T ss_pred             CccccccccccccCccCEEECCCCcccccccc-c-----cccC-------------------------------------
Confidence            5443  44566667777777777766654321 1     0111                                     


Q ss_pred             cCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCcccc
Q psy5670         717 LDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ  796 (1269)
Q Consensus       717 l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~  796 (1269)
                                                                                                      
T Consensus       397 --------------------------------------------------------------------------------  396 (570)
T 2z63_A          397 --------------------------------------------------------------------------------  396 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcEEEecCCCCCCcCC-CcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCc-ccCcccccCC
Q psy5670         797 LPPRIPMDATELYLDGNRIPVVGS-HSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT-EIRGYEFERL  874 (1269)
Q Consensus       797 ~p~~~p~~~~~l~l~~n~i~~l~~-~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~-~i~~~~f~~l  874 (1269)
                             .+++|++++|.+..+.+ ..|.++++|++|++++|.+..+.+..|.++++|++|+|++|.++ ...+..|.++
T Consensus       397 -------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  469 (570)
T 2z63_A          397 -------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  469 (570)
T ss_dssp             -------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             -------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence                   12455555555554433 45677888999999999999888889999999999999999987 3455788999


Q ss_pred             cccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccC
Q psy5670         875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRS  952 (1269)
Q Consensus       875 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~  952 (1269)
                      ++|++|+|++|+|+.+.+..|..+++|++|+|++|+++++++. + .+++|+.|++++|||.|+|+..+++..|++....
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~  549 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  549 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence            9999999999999999888999999999999999999999887 6 7899999999999999999975444599998776


Q ss_pred             CcCccCcceeccCCcc
Q psy5670         953 SVHDISQIRCMTGSEV  968 (1269)
Q Consensus       953 ~i~~~~~~~C~~p~~~  968 (1269)
                      .+.+..  +|.+|.+.
T Consensus       550 ~~~~~~--~C~~~~~~  563 (570)
T 2z63_A          550 KEQGSA--KCSGSGKP  563 (570)
T ss_dssp             GEESCC--BBTTTCCB
T ss_pred             cCCCch--hhCCCCCc
Confidence            776655  99987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.3e-44  Score=450.73  Aligned_cols=516  Identities=21%  Similarity=0.279  Sum_probs=357.1

Q ss_pred             CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEE
Q psy5670         269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL  348 (1269)
Q Consensus       269 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  348 (1269)
                      +.....+.+++.++.+|...+   ++|++|++++|.++++.+..|.++++|++|++++|.+.+  +.+..|.++++|++|
T Consensus         5 ~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHL   79 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEE
T ss_pred             CCCceEECCCCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccccCCEE
Confidence            444557888889999998653   789999999999999888888999999999999999887  556778889999999


Q ss_pred             EcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCc-ccccCcccccCCCCCCEEEccCCC
Q psy5670         349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDNNE  426 (1269)
Q Consensus       349 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  426 (1269)
                      ++++|.+.++++..|+.+++|++|++++|.++.+. +..|.++++|++|++++|. +..+.+..+.++++|++|++++|.
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            99999999888888888999999999999887643 3467888888888888887 555555677888888888888888


Q ss_pred             CCccChhhhcCCCCCcEEEccCCCCCCchhhh-cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhh
Q psy5670         427 LEYIEENALKNSTSLQDFHLNGNKLTEIPKVL-RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV  505 (1269)
Q Consensus       427 i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~  505 (1269)
                      +.+..+..++.+++|++|++++|.+..+|..+ ..+++|++|++++|.+++....                     +...
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~  218 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPV  218 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSS
T ss_pred             ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccch
Confidence            88877777888888888888888777776643 4567777777777776654210                     0011


Q ss_pred             hcCCCCCCEEEcCCCccccccc----cccCCCCCccEEEcccccccccC-------CcCCCCCCCcEEEccCCcCccccc
Q psy5670         506 FEKLSVLTILNLASNKIQKVEA----GTFDNNSNLVAIRLDGNYLTDIG-------GLFPKLPNLVWLNISENLLEWFDY  574 (1269)
Q Consensus       506 f~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~~l~-------~~~~~l~~L~~L~Ls~n~l~~~~~  574 (1269)
                      ...+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+..++       ..+..+++|+.|++.++.+.....
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~  298 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL  298 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence            2234445555555554443221    12233455555555555544332       123455666666666665543210


Q ss_pred             cccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcc--cCCccEEEccCcccccccC---CccCCC
Q psy5670         575 ALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAI--PHSVENLFLTNNLISKVQP---YTFFMK  649 (1269)
Q Consensus       575 ~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~--~~~L~~L~Ls~N~i~~~~~---~~f~~~  649 (1269)
                      .                ..++..  .....+|+.|++++|+++.++...+  .++|++|+|++|++++..|   ..+..+
T Consensus       299 ~----------------~~l~~~--~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l  360 (549)
T 2z81_A          299 F----------------YDLSTV--YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW  360 (549)
T ss_dssp             S----------------CCCCHH--HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred             c----------------ccchhh--hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence            0                000000  0112345555555555554443221  2456666666666665442   336677


Q ss_pred             CCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccC
Q psy5670         650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRA  729 (1269)
Q Consensus       650 ~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~  729 (1269)
                      ++|+.|+|++|+++.++...-.   +...                                                   
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~---~~~l---------------------------------------------------  386 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEI---LLTL---------------------------------------------------  386 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHH---GGGC---------------------------------------------------
T ss_pred             ccCcEEEccCCcccccccchhh---hhcC---------------------------------------------------
Confidence            7888888888877654320000   0000                                                   


Q ss_pred             CCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEE
Q psy5670         730 NPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY  809 (1269)
Q Consensus       730 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~  809 (1269)
                                                                                               .++++|+
T Consensus       387 -------------------------------------------------------------------------~~L~~L~  393 (549)
T 2z81_A          387 -------------------------------------------------------------------------KNLTSLD  393 (549)
T ss_dssp             -------------------------------------------------------------------------TTCCEEE
T ss_pred             -------------------------------------------------------------------------CCCCEEE
Confidence                                                                                     1235666


Q ss_pred             ecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcc
Q psy5670         810 LDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY  889 (1269)
Q Consensus       810 l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  889 (1269)
                      +++|+++.++. .+..+++|+.|++++|+|+.++...+   ++|++|+|++|+|+++.    .++++|++|+|++|+|+.
T Consensus       394 Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~  465 (549)
T 2z81_A          394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT  465 (549)
T ss_dssp             CTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS
T ss_pred             CCCCCCccCCh-hhcccccccEEECCCCCcccccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccCc
Confidence            66666666654 45566778888888888777665433   57889999999988764    478899999999999999


Q ss_pred             cChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCc
Q psy5670         890 ISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE  967 (1269)
Q Consensus       890 i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~  967 (1269)
                      |+..  ..+++|++|+|++|+|+++++. + .+++|+.|++++|||.|+|+...|+.+|++.....  +...++|..|..
T Consensus       466 ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~--~~~~~~C~~~~~  541 (549)
T 2z81_A          466 LPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSGK  541 (549)
T ss_dssp             CCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT--EESCCBBTTTCC
T ss_pred             CCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccc--cCCCCeECCCCc
Confidence            8874  4589999999999999999887 6 78999999999999999999778999999876433  557889998753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.8e-44  Score=446.53  Aligned_cols=492  Identities=18%  Similarity=0.254  Sum_probs=350.4

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      |+.....+.+++.++.+|...+   ++|++|+|++|+++++.+..|..      +++|++|++++|.++.+++.+|.+++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~n~i~~~~~~~~~~l~   74 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRA------CANLQVLILKSSRINTIEGDAFYSLG   74 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSS------CTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCceEECCCCccccccccCC---CCccEEECcCCccCccChhhhhc------CCcccEEECCCCCcCccChhhccccc
Confidence            3444456778888888887653   68888899888888776665544      67888999999888888888888889


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCc-ccccCcccccCCCCCCEEE
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +|++|++++|.++++.+..|+++++|++|++++|.++.++ +..|..+++|++|++++|. +..+++..|.++++|++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            9999999999888888888888899999999998888653 3467888889999998887 5667667788888889999


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc---cccccCCCCCcEEEccC
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH---RNTFASLSNLHTLIMSN  400 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~---~~~f~~l~~L~~L~Ls~  400 (1269)
                      +++|.+.+  ..+..+..+++|+.|+++.|.+..++...+..+++|++|++++|.++.++   ......+++|+.|++++
T Consensus       155 L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  232 (549)
T 2z81_A          155 IKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG  232 (549)
T ss_dssp             EEETTCCE--ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred             ccCCcccc--cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence            98888876  44677888888888888888887776666667888888888888887652   22234567888888888


Q ss_pred             CcccccCc----ccccCCCCCCEEEccCCCCCccC------hhhhcCCCCCcEEEccCCCCCCc------hhhhcCCCCC
Q psy5670         401 NKLKRIES----NSLDSLTALSVLSLDNNELEYIE------ENALKNSTSLQDFHLNGNKLTEI------PKVLRNLHSL  464 (1269)
Q Consensus       401 n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~l------p~~l~~l~~L  464 (1269)
                      |.+++..+    ..+..+++|+.+++++|.+.++.      ...+..+.+|+.|++.++.+...      +..+...++|
T Consensus       233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L  312 (549)
T 2z81_A          233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV  312 (549)
T ss_dssp             CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred             cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence            88776433    23456678888888888766542      12345667788888887766543      2223345678


Q ss_pred             cEEECCCCCCCccChhhhhccccCCeeeccCCcCCCC-C--hhhhcCCCCCCEEEcCCCccccccc--cccCCCCCccEE
Q psy5670         465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI-S--KGVFEKLSVLTILNLASNKIQKVEA--GTFDNNSNLVAI  539 (1269)
Q Consensus       465 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~--~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L  539 (1269)
                      ++|++++|.+..++...+..+++|+.|++++|.+... +  ...+..+++|++|++++|+++++..  ..+..+++|+.|
T Consensus       313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence            8888888887776665556778888888888877543 2  1235677788888888888877643  456777888888


Q ss_pred             EcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc
Q psy5670         540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL  619 (1269)
Q Consensus       540 ~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~  619 (1269)
                      ++++|+++.+|..+..+++|++|++++|+++.++. .+|++|+.|++++|+++++.     ..++               
T Consensus       393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~-----~~l~---------------  451 (549)
T 2z81_A          393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS-----LFLP---------------  451 (549)
T ss_dssp             ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCCC-----CCCT---------------
T ss_pred             ECCCCCCccCChhhcccccccEEECCCCCcccccc-hhcCCceEEECCCCChhhhc-----ccCC---------------
Confidence            88888888777777777778888777777765542 23445555555555555432     1233               


Q ss_pred             cCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccC-Ch
Q psy5670         620 TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN-MQ  698 (1269)
Q Consensus       620 ~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~-~~  698 (1269)
                             +|++|+|++|+++.+.+  ...+++|+.|+|++|+|+++++..+.     ...+++.+++++|||.|+|. ..
T Consensus       452 -------~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~  517 (549)
T 2z81_A          452 -------RLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCPRID  517 (549)
T ss_dssp             -------TCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG-----GCTTCCEEECCSSCBCCCHHHHH
T ss_pred             -------hhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHh-----cCcccCEEEecCCCccCCCccHH
Confidence                   45555555555554332  23456666777777766666554432     34566777788888999998 46


Q ss_pred             hHHhh
Q psy5670         699 WLQSY  703 (1269)
Q Consensus       699 ~l~~~  703 (1269)
                      |+..|
T Consensus       518 ~l~~~  522 (549)
T 2z81_A          518 YLSRW  522 (549)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.2e-44  Score=453.97  Aligned_cols=572  Identities=20%  Similarity=0.260  Sum_probs=378.3

Q ss_pred             EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCce
Q psy5670          61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKT  140 (1269)
Q Consensus        61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~  140 (1269)
                      .+.|..++++.+|.      ..|..+++|+|++|.    .+.+++.+|+++++|++|+|++|+|+.+++++|.++++|++
T Consensus        35 ~~~c~~~~l~~vP~------~lp~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           35 TYQCMELNFYKIPD------NLPFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST  104 (635)
T ss_dssp             EEECTTSCCSSCCS------SSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             EEECCCCCcCccCC------CCCcCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence            68999999999982      236789999999998    57788888999999999999999998888888888888888


Q ss_pred             eecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCC
Q psy5670         141 LTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG  220 (1269)
Q Consensus       141 L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l  220 (1269)
                      |+|++|+.      ..+++..| .++++|++|+|++|.++.+++..|+++++|++|+|++|++..+....+     ...+
T Consensus       105 L~Ls~N~l------~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-----~~~l  172 (635)
T 4g8a_A          105 LILTGNPI------QSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-----FSNL  172 (635)
T ss_dssp             EECTTCCC------CEECGGGG-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-----GGGC
T ss_pred             EEccCCcC------CCCCHHHh-cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-----hccc
Confidence            88876543      24556667 788888888888888888877777788888888888877765432211     1235


Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCC----EEEccCCCCcccchhhhcCCCCCcEEEccCCCCC-CCCcccccCCCCC
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQ----ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDL  295 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L  295 (1269)
                      ++|++|++++|.++.+++..|..+.+++    .++++.|.+..+.+..+.. ..++.+++.+|... .+....+..+..+
T Consensus       173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l  251 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGL  251 (635)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred             hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccc
Confidence            6677777777777666655554443332    4555555555554443322 23445555554322 1222333444444


Q ss_pred             cEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcc---cCchhhcCCCCCcEE
Q psy5670         296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK---LDSSIFKDLYRLQVL  372 (1269)
Q Consensus       296 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L  372 (1269)
                      +...+..+.....                  ..+..  .....+..+..+....+..+....   .....+..+.+++.+
T Consensus       252 ~~~~l~~~~~~~~------------------~~l~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l  311 (635)
T 4g8a_A          252 EVHRLVLGEFRNE------------------GNLEK--FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF  311 (635)
T ss_dssp             EEEEEEEECCTTS------------------CCCSC--CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred             ccccccccccccc------------------ccccc--ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence            4444322111100                  00000  112223333444444443322211   112234455677777


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670         373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT  452 (1269)
Q Consensus       373 ~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (1269)
                      .+.++.+..+..  +.....|+.|++.+|.+..+...   .++.|+.+++..|.+....  ....+++|+.|++++|.+.
T Consensus       312 ~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  384 (635)
T 4g8a_A          312 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS  384 (635)
T ss_dssp             EEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB
T ss_pred             cccccccccccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccc
Confidence            777776665543  44556777788777777665432   3456777777777665543  2345778888888888775


Q ss_pred             C---chhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCcccccccc
Q psy5670         453 E---IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAG  528 (1269)
Q Consensus       453 ~---lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~  528 (1269)
                      .   .+..+..+.+|+.+++..+.+..... .+..+++|+.++++.+.. ...+...|..+++++.++++.|.+.++.+.
T Consensus       385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~  463 (635)
T 4g8a_A          385 FKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  463 (635)
T ss_dssp             EEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             cccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence            3   34556677888888888887766544 466788888888888877 444556788899999999999999999888


Q ss_pred             ccCCCCCccEEEcccccccc--cCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccc
Q psy5670         529 TFDNNSNLVAIRLDGNYLTD--IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL  606 (1269)
Q Consensus       529 ~~~~~~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L  606 (1269)
                      .+..+++|+.|++++|.+..  .|..|..+++|+.|++++|+++.++..                       .+.+++  
T Consensus       464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-----------------------~f~~l~--  518 (635)
T 4g8a_A          464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-----------------------AFNSLS--  518 (635)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------------------TTTTCT--
T ss_pred             ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH-----------------------HHcCCC--
Confidence            99999999999999987543  467788888887777777766533111                       111222  


Q ss_pred             cEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCC-CCCCceE
Q psy5670         607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSH-KNIPDFY  685 (1269)
Q Consensus       607 ~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~-~~l~~l~  685 (1269)
                                          +|++|+|++|+|+++.+..|.++++|+.|||++|+|+++++..+.     .. ++|+.++
T Consensus       519 --------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~~L~~L~  573 (635)
T 4g8a_A          519 --------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-----HFPSSLAFLN  573 (635)
T ss_dssp             --------------------TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-----CCCTTCCEEE
T ss_pred             --------------------CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH-----hhhCcCCEEE
Confidence                                455566666666666677788888899999999999888877653     22 4688999


Q ss_pred             ecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccccc
Q psy5670         686 IGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEA  738 (1269)
Q Consensus       686 l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~  738 (1269)
                      +++|||.|||++.|+..|-.   .....+.+.+.+.|..|..  ..+.++.++
T Consensus       574 L~~Np~~C~C~~~~~~~wl~---~~~~~~~~~~~~~C~~P~~--~~g~~l~~~  621 (635)
T 4g8a_A          574 LTQNDFACTCEHQSFLQWIK---DQRQLLVEVERMECATPSD--KQGMPVLSL  621 (635)
T ss_dssp             CTTCCBCCSGGGHHHHHHHH---HTTTTBSCGGGCBBCSSTT--TTTCBGGGC
T ss_pred             eeCCCCcccCCcHHHHHHHH---hCCCccCCCCCceeCCchH--HCCCEeeee
Confidence            99999999999999987643   1223345667789976643  455666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.3e-43  Score=436.26  Aligned_cols=491  Identities=23%  Similarity=0.291  Sum_probs=320.4

Q ss_pred             CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670         167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR  246 (1269)
Q Consensus       167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  246 (1269)
                      +++++|++++|.++.+++..|..+++|++|+|++|++.++++..|..      +++|++|+|++|.++.+++..|+++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccC------chhCCEEeCcCCcCCccCHhhhcCccc
Confidence            46777777777777777766777777777777777777766555543      567777777777777777777777777


Q ss_pred             CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCC----CE
Q psy5670         247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQL----IV  321 (1269)
Q Consensus       247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~  321 (1269)
                      |++|++++|.++.+.+..|+++++|++|++++|.+..+. +..|.++++|++|++++|.++++.+..++.+++|    +.
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            777777777777776666777777777777777777642 3456777777777777777777766666666666    67


Q ss_pred             EECcCCCCCccccCcccccCCCCccEEEcCCCCCcc-cCchhhcCCCCCcEEEccCC------cccccccccccCCCC--
Q psy5670         322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLHLENN------QIESIHRNTFASLSN--  392 (1269)
Q Consensus       322 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n------~l~~i~~~~f~~l~~--  392 (1269)
                      |++++|.+..  +.+..+... +|+.|++++|.... ..+..+..+..++.+.+...      .+..+....|..+++  
T Consensus       182 L~l~~n~l~~--~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          182 LDLSLNPMNF--IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             EECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             cccCCCCcee--cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence            7777777765  445555544 67777777664321 12234455566655544322      122333333333332  


Q ss_pred             CcEEEccCC-cccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670         393 LHTLIMSNN-KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD  471 (1269)
Q Consensus       393 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~  471 (1269)
                      ++.++++++ .+.+..+..+..+++|+.|++++|.+..++. .+..+ +|++|++++|.+..+|.  ..+++|++|++++
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~  334 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEES
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccCcccccCc--ccccccCEEeCcC
Confidence            344555555 4555555556666666666666666655432 34445 66666666666666654  3556666666666


Q ss_pred             CCCCccChhhhhccccCCeeeccCCcCCCCC--hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670         472 NLITEINNLSLNSLHQLAGLRLTENNISNIS--KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      |.+.+..+.  ..+++|+.|++++|.+..+.  +..+.++++|++|++++|++.++.+. +..+++|+.|++++|.+..+
T Consensus       335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            665554432  45566666666666664443  23455666666666666666655544 55666666666666666554


Q ss_pred             C--CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc-ccCCcc--
Q psy5670         550 G--GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE-LTGNAI--  624 (1269)
Q Consensus       550 ~--~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~-~~~~~~--  624 (1269)
                      +  ..+..+++|+.|++++|.+.                      ...+ ..+..+++|++|++++|++++ ..+..+  
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTR----------------------VAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCE----------------------ECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cchhhhhcCCCCCEEeCcCCccc----------------------ccch-hhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            3  24555555555555555544                      3221 123456788888888888862 223333  


Q ss_pred             cCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670         625 PHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ  701 (1269)
Q Consensus       625 ~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~  701 (1269)
                      .++|++|+|++|+++++.|..|..+++|+.|+|++|+++++++..+     ..+++|+.+++++||+.|+|...|+.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-----hcccCCcEEEecCCcccCCCcchHHH
Confidence            3589999999999999999999999999999999999999877654     45678999999999999999975543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=429.53  Aligned_cols=477  Identities=19%  Similarity=0.232  Sum_probs=293.7

Q ss_pred             CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q psy5670         320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS  399 (1269)
Q Consensus       320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  399 (1269)
                      ++|++++|.++.  ++ ..+.  ++|+.|++++|.+.++++..|..+++|++|++++|.++.+.+..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~~--ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS--CC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc--cc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            356666666654  32 2222  566666666666666665556666666666666666666655556666666666666


Q ss_pred             CCcccccCcccccCCCCCCEEEccCCCCCcc-ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCC--cEEECCCCCC--
Q psy5670         400 NNKLKRIESNSLDSLTALSVLSLDNNELEYI-EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL--KTLDLGDNLI--  474 (1269)
Q Consensus       400 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L--~~L~Ls~n~i--  474 (1269)
                      +|+++.+...   .+++|++|++++|.+.++ .|..|+++++|++|++++|.++.  ..+..+++|  ++|++++|.+  
T Consensus        78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc
Confidence            6666544332   455566666666655553 23455555555555555555543  223444444  5555555555  


Q ss_pred             CccChhhhhccc-cCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCc-------cccccccccCCCCCccEEEccccc
Q psy5670         475 TEINNLSLNSLH-QLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNK-------IQKVEAGTFDNNSNLVAIRLDGNY  545 (1269)
Q Consensus       475 ~~~~~~~~~~l~-~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~-------i~~~~~~~~~~~~~L~~L~L~~n~  545 (1269)
                      .+..+..+..+. ....+++++|.+ +.++...+..+++|+.|++++|.       +.+..+                  
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------  214 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA------------------  214 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH------------------
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh------------------
Confidence            444443333332 122334444444 33333334444444444444443       222222                  


Q ss_pred             ccccCCcCCCCCCCcEEEccCCcCcccccccc-----CCCccEEECCCCCcc-cccccc---cccccccccEEEcCCCcc
Q psy5670         546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALI-----PADLQWLDIHGNQIS-ELGNYF---EIESQLRLTYFDASSNKL  616 (1269)
Q Consensus       546 l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----p~~L~~L~Ls~n~l~-~~~~~~---~l~~~~~L~~LdLs~N~l  616 (1269)
                            .+..+++|+.|++++|.++......+     ..+|++|++++|+++ .++...   ....+.+|+.+++++|.+
T Consensus       215 ------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          215 ------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             ------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ------hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence                  33444455555555544432111111     124555555555555 333211   014566777777777777


Q ss_pred             ccccCCccc-----CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCcc
Q psy5670         617 TELTGNAIP-----HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF  691 (1269)
Q Consensus       617 ~~~~~~~~~-----~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~  691 (1269)
                       .++...+.     .+|+.|++++|.+....  .+..+++|+.|++++|++++..+..+     ...             
T Consensus       289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l-------------  347 (520)
T 2z7x_B          289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-----GHL-------------  347 (520)
T ss_dssp             -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-----CCC-------------
T ss_pred             -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-----ccC-------------
Confidence             33322211     35777777777765543  12566777777777777664211110     000             


Q ss_pred             ccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCC
Q psy5670         692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPN  771 (1269)
Q Consensus       692 ~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~  771 (1269)
                                                                                                      
T Consensus       348 --------------------------------------------------------------------------------  347 (520)
T 2z7x_B          348 --------------------------------------------------------------------------------  347 (520)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCC--CcCCCCCCccEEEccCcCccc-ccccccc
Q psy5670         772 NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGS--HSFIGRKKLQILFLNSSHVET-IHNKTFN  848 (1269)
Q Consensus       772 ~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~--~~f~~~~~L~~L~l~~n~i~~-i~~~~f~  848 (1269)
                                                     ..+++|++++|+++.++.  ..|.++++|+.|++++|+++. ++...|.
T Consensus       348 -------------------------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          348 -------------------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             -------------------------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             -------------------------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence                                           124667777777776543  457778899999999999998 8888899


Q ss_pred             CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670         849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI  926 (1269)
Q Consensus       849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l  926 (1269)
                      .+++|+.|+|++|+++...+..+.  ++|++|+|++|+|+.++...+ .+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence            999999999999999866554443  789999999999999988777 899999999999999999988 6 78999999


Q ss_pred             EeeCCcccccCCcHHHH-HHHHHhccCCcCccCcceeccCCcc
Q psy5670         927 TLTSNPWSCDCDFTEKF-RDYLQRSRSSVHDISQIRCMTGSEV  968 (1269)
Q Consensus       927 ~l~~Np~~C~C~~~~~~-~~w~~~~~~~i~~~~~~~C~~p~~~  968 (1269)
                      ++++|||.|+|+. .|| +.|+++....  +..+++|..|...
T Consensus       474 ~l~~N~~~c~c~~-~~~~~~~~~~~~~~--~~~~~~C~~p~~~  513 (520)
T 2z7x_B          474 WLHTNPWDCSCPR-IDYLSRWLNKNSQK--EQGSAKCSGSGKP  513 (520)
T ss_dssp             ECCSSCBCCCHHH-HHHHHHHHHHTTTT--EESCCBBTTTCCB
T ss_pred             ECcCCCCcccCCc-hHHHHHHHHhcccc--CCCCCCcCCcccc
Confidence            9999999999996 688 9999876433  4578899998643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.7e-42  Score=423.00  Aligned_cols=462  Identities=20%  Similarity=0.233  Sum_probs=280.1

Q ss_pred             CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670         170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE  249 (1269)
Q Consensus       170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  249 (1269)
                      ++|++++|.++.+|...+   ++|++|+|++|++.++++..|..      +++|++|+|++|.++.+.+..|+++++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILS------LSKLRILIISHNRIQYLDISVFKFNQELEY   73 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTT------CTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccc------cccccEEecCCCccCCcChHHhhcccCCCE
Confidence            356666666666665432   55555555555555544333332      344555555555555544444555555555


Q ss_pred             EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670         250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL  329 (1269)
Q Consensus       250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  329 (1269)
                      |++++|.++.++..   .+++|++|++++|.++.++                       .|..|+++++|++|++++|.+
T Consensus        74 L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-----------------------~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           74 LDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-----------------------ICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             EECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-----------------------CCGGGGGCTTCCEEEEEESSC
T ss_pred             EecCCCceeecCcc---ccCCccEEeccCCcccccc-----------------------chhhhccCCcceEEEecCccc
Confidence            55555555443322   4445555555555444432                       233444444444444444444


Q ss_pred             CccccCcccccCCCCc--cEEEcCCCCC--cccCchhhcCCC-CCcEEEccCCccc-ccccccccCCCCCcEEEccCCc-
Q psy5670         330 TEEWVNAATFSGLHRL--VVLNIAYNKM--NKLDSSIFKDLY-RLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNK-  402 (1269)
Q Consensus       330 ~~~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~-  402 (1269)
                      .+     ..+..+++|  +.|++++|.+  .+..+..+..+. ....+++++|.+. .++...+..+++|+.|++++|. 
T Consensus       128 ~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          128 EK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             CG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             ch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            32     123333333  5555555544  333333333332 1223445555433 3344445566666666666664 


Q ss_pred             ------ccccCcccccCCCCCCEEEccCCCCCccChhhh---cCCCCCcEEEccCCCCC-Cchhhh-----cCCCCCcEE
Q psy5670         403 ------LKRIESNSLDSLTALSVLSLDNNELEYIEENAL---KNSTSLQDFHLNGNKLT-EIPKVL-----RNLHSLKTL  467 (1269)
Q Consensus       403 ------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L  467 (1269)
                            +.+..+ .+..+++|+.|++++|.+.+.....+   ...++|++|++++|.++ .+|..+     ..+++|+.+
T Consensus       203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                  444333 45666677777776666554222111   11356777777777766 666665     667777777


Q ss_pred             ECCCCCCCccChhhhhcc---ccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccc
Q psy5670         468 DLGDNLITEINNLSLNSL---HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN  544 (1269)
Q Consensus       468 ~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n  544 (1269)
                      ++++|.+ .++...+..+   .+|+.|++++|.+..++.  +..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       282 ~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  358 (520)
T 2z7x_B          282 QVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN  358 (520)
T ss_dssp             EEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred             cccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence            7777777 4443444443   567777777777755442  256777888888888877766677777777888888877


Q ss_pred             ccccc---CCcCCCCCCCcEEEccCCcCcc-ccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc
Q psy5670         545 YLTDI---GGLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT  620 (1269)
Q Consensus       545 ~l~~l---~~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~  620 (1269)
                      .++++   |..+..+++|+.|++++|.++. ++..                       .+..+++|++|++++|++++..
T Consensus       359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~  415 (520)
T 2z7x_B          359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSLNMSSNILTDTI  415 (520)
T ss_dssp             CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEEECCSSCCCGGG
T ss_pred             ccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEEECcCCCCCcch
Confidence            77753   3456667777777777776653 2211                       1234567888888888887766


Q ss_pred             CCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhH
Q psy5670         621 GNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWL  700 (1269)
Q Consensus       621 ~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l  700 (1269)
                      +..++++|+.|+|++|+++.+. ..+..+++|+.|+|++|+|+.++...+     ...++++++++++||+.|+|.+.|+
T Consensus       416 ~~~l~~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          416 FRCLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             GGSCCTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             hhhhcccCCEEECCCCcccccc-hhhhcCCCCCEEECCCCcCCccCHHHh-----ccCCcccEEECcCCCCcccCCchHH
Confidence            6667788999999999999654 445589999999999999998887533     4567899999999999999999998


Q ss_pred             -Hhhc
Q psy5670         701 -QSYS  704 (1269)
Q Consensus       701 -~~~~  704 (1269)
                       ..|-
T Consensus       490 ~~~~~  494 (520)
T 2z7x_B          490 LSRWL  494 (520)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence             6553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-40  Score=412.07  Aligned_cols=154  Identities=21%  Similarity=0.303  Sum_probs=113.5

Q ss_pred             cEEEecCCCCCCcCC--CcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccccCC-cccCeee
Q psy5670         806 TELYLDGNRIPVVGS--HSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELY  881 (1269)
Q Consensus       806 ~~l~l~~n~i~~l~~--~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l-~~L~~L~  881 (1269)
                      ++|++++|+++.++.  ..|.++++|+.|++++|+++. ++...|.++++|+.|+|++|+++...+   ..+ ++|++|+
T Consensus       380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L~  456 (562)
T 3a79_B          380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLD  456 (562)
T ss_dssp             CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEEE
T ss_pred             CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEEE
Confidence            334444444444332  235556677777777777777 777777788888888888888765433   334 5888888


Q ss_pred             cccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHH-HHHHhccCCcC---
Q psy5670         882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFR-DYLQRSRSSVH---  955 (1269)
Q Consensus       882 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~-~w~~~~~~~i~---  955 (1269)
                      |++|+|+.+++..| .+++|++|+|++|+|+.+++. + .+++|+.|++++|||.|+|+. .||. .|++.....+.   
T Consensus       457 L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~~~~~~~~~~~~~~~~~  534 (562)
T 3a79_B          457 LHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-IRYLSEWINKHSGVVRNSA  534 (562)
T ss_dssp             CCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH-HHHHHHHHHHTTTTEECSS
T ss_pred             CCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch-HHHHHHHHHhcCCcccccc
Confidence            88888888888777 888888888888888888887 6 778899999999999999996 6775 49887665554   


Q ss_pred             ---ccCcceecc
Q psy5670         956 ---DISQIRCMT  964 (1269)
Q Consensus       956 ---~~~~~~C~~  964 (1269)
                         ....+.|..
T Consensus       535 ~~~~~~~~~C~~  546 (562)
T 3a79_B          535 GSVAPDSAKCSG  546 (562)
T ss_dssp             SSBCSSSSCBSS
T ss_pred             cCCCCCCCccCC
Confidence               334678876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=404.84  Aligned_cols=463  Identities=19%  Similarity=0.178  Sum_probs=273.2

Q ss_pred             CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670         168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL  247 (1269)
Q Consensus       168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  247 (1269)
                      ..++++++++.++.+|...+   ++|++|+|++|++.++++..|..      +++|++|+|++|.++.+++..|.++++|
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISF------LSELRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTT------CTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhcc------CCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence            34566666666666655432   45555555555555544433332      3455555555555555544445555555


Q ss_pred             CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670         248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN  326 (1269)
Q Consensus       248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  326 (1269)
                      ++|++++|.++.++..   .+++|++|++++|+++.++ +..|.++++|++|++++|.++...   +..+++|       
T Consensus       103 ~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L-------  169 (562)
T 3a79_B          103 EYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHL-------  169 (562)
T ss_dssp             CEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTS-------
T ss_pred             CEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhc-------
Confidence            5555555555444332   4455555555555544443 233444445555555444444321   2222222       


Q ss_pred             CCCCccccCcccccCCCCccEEEcCCCCC--cccCchhhcCCC-CCcEEEccCCcccc-cccccccCCCCCcEEEccCCc
Q psy5670         327 NELTEEWVNAATFSGLHRLVVLNIAYNKM--NKLDSSIFKDLY-RLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNK  402 (1269)
Q Consensus       327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~  402 (1269)
                                       +|+.|++++|.+  .+..+..+..+. ..-.+++++|.+.. +....+..+++|+.|++++|+
T Consensus       170 -----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          170 -----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             -----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred             -----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence                             225555555444  333333333332 11133444444332 333344555666666666553


Q ss_pred             -----ccccCcccccCCCCCCEEEccCCCCCccChh---hhcCCCCCcEEEccCCCCC-Cchhhh-----cCCCCCcEEE
Q psy5670         403 -----LKRIESNSLDSLTALSVLSLDNNELEYIEEN---ALKNSTSLQDFHLNGNKLT-EIPKVL-----RNLHSLKTLD  468 (1269)
Q Consensus       403 -----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L~  468 (1269)
                           +.+. ...+..++.|+.|++.++.+.+....   .....++|++|++++|.++ .+|..+     ..++.|+.++
T Consensus       233 ~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~  311 (562)
T 3a79_B          233 ENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH  311 (562)
T ss_dssp             TTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred             cccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence                 1111 12345556666666665554432110   1112347777777777766 566554     5555566666


Q ss_pred             CCCCCCCccChhhhhcc---ccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccc
Q psy5670         469 LGDNLITEINNLSLNSL---HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY  545 (1269)
Q Consensus       469 Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~  545 (1269)
                      ++.+.+ .++...+..+   .+|+.|++++|.+..+..  +..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       312 ~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          312 VKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             EEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             ccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence            666665 3433333322   567888888887755441  2567788888888888887777777778888888888888


Q ss_pred             ccccC---CcCCCCCCCcEEEccCCcCcc-ccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccC
Q psy5670         546 LTDIG---GLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG  621 (1269)
Q Consensus       546 l~~l~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~  621 (1269)
                      ++.++   ..+..+++|+.|++++|+++. ++..                       .+..+++|++|++++|++++..+
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------------------TCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------------CCCCCTTCCEEECCSSCCCGGGG
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------------hhcCcccCCEEECCCCCCCcchh
Confidence            77654   456777777777777776653 2111                       12345678888888888887766


Q ss_pred             CcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670         622 NAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ  701 (1269)
Q Consensus       622 ~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~  701 (1269)
                      ..++++|+.|+|++|+++.+.+..+ .+++|+.|+|++|+|+.++...+     ...++++.+++++|||.|+|++.|+.
T Consensus       446 ~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~~  519 (562)
T 3a79_B          446 RCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVF-----DRLTSLQYIWLHDNPWDCTCPGIRYL  519 (562)
T ss_dssp             SSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTST-----TTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred             hhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHH-----hcCCCCCEEEecCCCcCCCcchHHHH
Confidence            6777889999999999997765555 89999999999999999887633     45678899999999999999999884


Q ss_pred             h
Q psy5670         702 S  702 (1269)
Q Consensus       702 ~  702 (1269)
                      .
T Consensus       520 ~  520 (562)
T 3a79_B          520 S  520 (562)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.4e-40  Score=414.39  Aligned_cols=322  Identities=20%  Similarity=0.309  Sum_probs=205.5

Q ss_pred             CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCC-CCC--CCcccccC------CCCCcEEEeeCCcccccCc-cc
Q psy5670         243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN-LVN--IPPELFNQ------SRDLKEVYLQNNSINVLAP-GI  312 (1269)
Q Consensus       243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~f~~------l~~L~~L~L~~n~l~~~~~-~~  312 (1269)
                      ++++|++|++++|.+.+..|..|.++++|++|++++|+ ++.  +|.. +..      +++|++|++++|.++.++. ..
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence            55555555555555555555555555555555555555 443  3322 222      2556666666666553332 14


Q ss_pred             ccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCC-CcEEEccCCcccccccccccCC-
Q psy5670         313 FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR-LQVLHLENNQIESIHRNTFASL-  390 (1269)
Q Consensus       313 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l-  390 (1269)
                      ++++++|+.|++++|.+.+. + + .+..+++|+.|++++|.+..++. .+..+++ |++|++++|.++.++. .+..+ 
T Consensus       326 l~~l~~L~~L~L~~N~l~g~-i-p-~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~  400 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGK-L-P-AFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPN-IFDAKS  400 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEE-C-C-CCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCS-CCCTTC
T ss_pred             hccCCCCCEEeCcCCcCccc-h-h-hhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccch-hhhhcc
Confidence            55666666666666665532 2 2 55555666666666666664433 3555666 6666666666665543 33333 


Q ss_pred             -CCCcEEEccCCcccccCccccc-------CCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcC-C
Q psy5670         391 -SNLHTLIMSNNKLKRIESNSLD-------SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN-L  461 (1269)
Q Consensus       391 -~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~-l  461 (1269)
                       ++|+.|++++|.+.+..+..+.       .+++|+.|++++|.+..+++..+..+++|++|++++|.++.+|..... .
T Consensus       401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence             3677777777777766665555       566777777777777777766677777777888877777777653322 2


Q ss_pred             -------CCCcEEECCCCCCCccChhhh-hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEc------CCCccccccc
Q psy5670         462 -------HSLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL------ASNKIQKVEA  527 (1269)
Q Consensus       462 -------~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L------s~n~i~~~~~  527 (1269)
                             ++|++|++++|.++.++...+ ..+++|+.|+|++|++..+|.. +..+++|+.|+|      ++|++.+..+
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccCh
Confidence                   278888888888876554322 3777888888888888766654 567888888888      4566777777


Q ss_pred             cccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcccc
Q psy5670         528 GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD  573 (1269)
Q Consensus       528 ~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~  573 (1269)
                      ..+..+++|+.|++++|.++.+|..+.  ++|+.|++++|.+..++
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             HHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence            778888888888888888877776544  67777777777776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-38  Score=405.83  Aligned_cols=436  Identities=19%  Similarity=0.216  Sum_probs=246.9

Q ss_pred             cceeEEEEEeCCceeeccCCCchhccCCcccceeEe-ccccCCCCCh-hhc-----------------------------
Q psy5670          84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSV-EFCKIGNLSA-GSF-----------------------------  132 (1269)
Q Consensus        84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L-~~~~i~~i~~-~~f-----------------------------  132 (1269)
                      .+|+.|+|+++.+   .+.+|+ +|+++++|++|+| ++|.+....+ ...                             
T Consensus       323 ~~V~~L~Ls~~~L---~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          323 GRVTGLSLAGFGA---KGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             SCEEEEECTTTCC---EEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             CCEEEEECccCCC---CCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence            5688999999984   456664 8999999999999 7775532211 000                             


Q ss_pred             ---------------------cCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc----------
Q psy5670         133 ---------------------RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT----------  181 (1269)
Q Consensus       133 ---------------------~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~----------  181 (1269)
                                           .....++.+.+...     ...+.-.|..| +++++|++|+|++|.++.          
T Consensus       399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~-----~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~  472 (876)
T 4ecn_A          399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-----TNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDA  472 (876)
T ss_dssp             GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCC-----SCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             hhhHHHHHHhhhCccccccccccccchhhceeccc-----cCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccc
Confidence                                 00111111111110     00111135556 677777777777777766          


Q ss_pred             --------CCccc-CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCC-CCc--cCcc------cCCC
Q psy5670         182 --------LPDAI-FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS-FDS--LPAE------GFSR  243 (1269)
Q Consensus       182 --------l~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~--~~~~------~~~~  243 (1269)
                              +|..+ |.++++|++|+|++|++.+..+..+..      +++|+.|+|++|+ ++.  +|..      .+..
T Consensus       473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~  546 (876)
T 4ecn_A          473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------LPELQSLNIACNRGISAAQLKADWTRLADDEDT  546 (876)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred             ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------CCCCCEEECcCCCCcccccchHHHHhhhhcccc
Confidence                    56543 226777777777777665554444432      5667777777776 654  3221      2233


Q ss_pred             CCCCCEEEccCCCCcccch-hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCC-CCE
Q psy5670         244 LSRLQELYLQGNILTFLAD-HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ-LIV  321 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~  321 (1269)
                      +++|+.|++++|.++.++. ..|.++++|+.|+|++|+++.+|  .|..+++|+.|+|++|.+..++ ..+.++++ |+.
T Consensus       547 l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~  623 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEG  623 (876)
T ss_dssp             TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCE
T ss_pred             cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccch-HHHhhccccCCE
Confidence            4467777777777664432 25667777777777777666665  4566677777777777666443 34566666 777


Q ss_pred             EECcCCCCCccccCcccccCCC--CccEEEcCCCCCcccCchhh---c--CCCCCcEEEccCCcccccccccccCCCCCc
Q psy5670         322 LDLSNNELTEEWVNAATFSGLH--RLVVLNIAYNKMNKLDSSIF---K--DLYRLQVLHLENNQIESIHRNTFASLSNLH  394 (1269)
Q Consensus       322 L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~  394 (1269)
                      |++++|.+..  + +..+..+.  +|+.|++++|.+.+..+...   .  .+++|+.|++++|.++.++...+..+++|+
T Consensus       624 L~Ls~N~L~~--l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          624 LGFSHNKLKY--I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             EECCSSCCCS--C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             EECcCCCCCc--C-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            7777776653  2 33444333  36777777776655433211   1  233666666666666666665555666666


Q ss_pred             EEEccCCcccccCcccccCC-------CCCCEEEccCCCCCccChhhhc--CCCCCcEEEccCCCCCCchhhhcCCCCCc
Q psy5670         395 TLIMSNNKLKRIESNSLDSL-------TALSVLSLDNNELEYIEENALK--NSTSLQDFHLNGNKLTEIPKVLRNLHSLK  465 (1269)
Q Consensus       395 ~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~  465 (1269)
                      .|+|++|++..+....+...       ++|+.|+|++|++..++. .+.  .+++|+.|+|++|.++.+|..+..+++|+
T Consensus       701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~  779 (876)
T 4ecn_A          701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK  779 (876)
T ss_dssp             EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCC
T ss_pred             EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCccchhhhcCCCCC
Confidence            66666666665544333322       266666666666664443 333  56666666666666666666666666666


Q ss_pred             EEECCC------CCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670         466 TLDLGD------NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI  539 (1269)
Q Consensus       466 ~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L  539 (1269)
                      .|+|++      |.+.+..+..+..+++|+.|+|++|.++.+|...+   ++|+.|+|++|++..+....+.....+..+
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~  856 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMY  856 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCC
T ss_pred             EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHHccccccchhe
Confidence            666654      44445555555555555555555555555554321   355555555555555444444333333333


Q ss_pred             Eccccc
Q psy5670         540 RLDGNY  545 (1269)
Q Consensus       540 ~L~~n~  545 (1269)
                      .|.+|.
T Consensus       857 ~L~~n~  862 (876)
T 4ecn_A          857 VLLYDK  862 (876)
T ss_dssp             EEECCT
T ss_pred             eecCCC
Confidence            344433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-37  Score=374.33  Aligned_cols=417  Identities=23%  Similarity=0.316  Sum_probs=265.9

Q ss_pred             EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCC-CCChhhhcCCCCCCEEEcCCCc
Q psy5670         443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNK  521 (1269)
Q Consensus       443 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~  521 (1269)
                      .++.+++.++.+|. +  .++|++|++++|.++++.+..|..+++|+.|++++|.+. .++...|.++++|++|+|++|+
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            45555666666665 2  256666666666666666666666666666666666663 5555566666677777777776


Q ss_pred             cccccccccCCCCCccEEEcccccccc-cC--CcCCCCCCCcEEEccCCcCccccccc---cCCCccEEECCCCCccccc
Q psy5670         522 IQKVEAGTFDNNSNLVAIRLDGNYLTD-IG--GLFPKLPNLVWLNISENLLEWFDYAL---IPADLQWLDIHGNQISELG  595 (1269)
Q Consensus       522 i~~~~~~~~~~~~~L~~L~L~~n~l~~-l~--~~~~~l~~L~~L~Ls~n~l~~~~~~~---lp~~L~~L~Ls~n~l~~~~  595 (1269)
                      ++++.+..|.++++|++|++++|.+++ ++  ..+..+++|++|++++|+++......   -.++|++|++++|+++.+.
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            666666666666667777776666664 22  23566666666666666655432111   1123444444444443332


Q ss_pred             cc-ccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670         596 NY-FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP  674 (1269)
Q Consensus       596 ~~-~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~  674 (1269)
                      .. +.-....+|+.|++++|.+.++....+..              .....+..+++|+.|++++|++++..+..+.  .
T Consensus       171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~  234 (455)
T 3v47_A          171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFF--D  234 (455)
T ss_dssp             TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHH--H
T ss_pred             hhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhh--c
Confidence            21 00001134555555555555443322110              0000122334455555555554443222211  0


Q ss_pred             CCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccc
Q psy5670         675 LPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPL  754 (1269)
Q Consensus       675 ~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  754 (1269)
                      .....+++.+++++|.......       .      ..                     .+.+....             
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~-------~------~~---------------------~~~~~~~~-------------  267 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSF-------G------HT---------------------NFKDPDNF-------------  267 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCT-------T------CC---------------------SSCCCCTT-------------
T ss_pred             cccccceeeEeecccccccccc-------c------hh---------------------hhccCccc-------------
Confidence            0011223333333322110000       0      00                     00000000             


Q ss_pred             cccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEc
Q psy5670         755 CHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL  834 (1269)
Q Consensus       755 ~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l  834 (1269)
                                                           .+...    -...++.|++++|.++.+.+..|.++++|++|++
T Consensus       268 -------------------------------------~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  306 (455)
T 3v47_A          268 -------------------------------------TFKGL----EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL  306 (455)
T ss_dssp             -------------------------------------TTGGG----TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -------------------------------------ccccc----cccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence                                                 00000    1134689999999999999999999999999999


Q ss_pred             cCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceee
Q psy5670         835 NSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF  914 (1269)
Q Consensus       835 ~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  914 (1269)
                      ++|+++.+.+..|.++++|+.|+|++|+++.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670         915 AVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV  968 (1269)
Q Consensus       915 ~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~  968 (1269)
                      ++. + .+++|+.|++++|||.|+|+...|+..|++.....  ......|..+...
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~--~~~~~~c~~~~~~  440 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSGKP  440 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTT--EESCCBBTTTCCB
T ss_pred             CHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccc--eeeeeeecCCCcc
Confidence            998 6 78999999999999999999778999999876443  3456789876544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-37  Score=396.32  Aligned_cols=443  Identities=20%  Similarity=0.227  Sum_probs=323.5

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEc-cCCCCcccchhh-----------------------------------
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYL-QGNILTFLADHA-----------------------------------  264 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~-----------------------------------  264 (1269)
                      .+++.|+|+++.+.+..+..|+++++|+.|+| ++|.+.+..+..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57888888888888766667888888888888 777554331100                                   


Q ss_pred             -----h-----------cCCCCCcEEEccC--CCCCCCCcccccCCCCCcEEEeeCCcccc-----------------cC
Q psy5670         265 -----L-----------DGLNSLTVLNLSV--NNLVNIPPELFNQSRDLKEVYLQNNSINV-----------------LA  309 (1269)
Q Consensus       265 -----~-----------~~l~~L~~L~Ls~--n~l~~l~~~~f~~l~~L~~L~L~~n~l~~-----------------~~  309 (1269)
                           +           .....++.+.+..  |+++++|. .|.++++|+.|+|++|.+++                 ..
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                 0           1112233333332  55666765 46889999999999999988                 13


Q ss_pred             ccccc--CCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-Ccc-cCchhhc-------CCCCCcEEEccCCc
Q psy5670         310 PGIFN--VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNK-LDSSIFK-------DLYRLQVLHLENNQ  378 (1269)
Q Consensus       310 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~Ls~n~  378 (1269)
                      |..++  ++++|+.|+|++|.+.+.  .+..+.++++|+.|++++|. +++ ..+..+.       .+++|++|++++|.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            44545  899999999999987763  36788899999999999997 776 3344343       44599999999999


Q ss_pred             cccccc-ccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchh
Q psy5670         379 IESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPK  456 (1269)
Q Consensus       379 l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~  456 (1269)
                      ++.++. ..|..+++|+.|++++|+++.+.  .+..+++|+.|+|++|.+..+ +..+..+++ |+.|++++|.++.+|.
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp~  636 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIPN  636 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECcCCCCCcCch
Confidence            997765 36889999999999999998444  788999999999999999854 455888888 9999999999999998


Q ss_pred             hhcCCCC--CcEEECCCCCCCccChh---hhh--ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccc
Q psy5670         457 VLRNLHS--LKTLDLGDNLITEINNL---SLN--SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGT  529 (1269)
Q Consensus       457 ~l~~l~~--L~~L~Ls~n~i~~~~~~---~~~--~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~  529 (1269)
                      .+..++.  |+.|++++|.+.+..+.   .+.  .+++|+.|+|++|.+..++...|..+++|+.|+|++|+++.++...
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~  716 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS  716 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence            7766654  99999999999876542   122  3458999999999999999888889999999999999999887766


Q ss_pred             cCCC-------CCccEEEcccccccccCCcCC--CCCCCcEEEccCCcCccccccc-cCCCccEEECCCCCccccccccc
Q psy5670         530 FDNN-------SNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYAL-IPADLQWLDIHGNQISELGNYFE  599 (1269)
Q Consensus       530 ~~~~-------~~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-lp~~L~~L~Ls~n~l~~~~~~~~  599 (1269)
                      +...       ++|+.|+|++|+++.+|..+.  .+++|+.|++++|+++.++... -.++|+.|+|++|+         
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~---------  787 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR---------  787 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------
T ss_pred             hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------
Confidence            6543       389999999999999987776  8889999999888887543211 11245555554433         


Q ss_pred             ccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCC
Q psy5670         600 IESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS  677 (1269)
Q Consensus       600 l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~  677 (1269)
                                ++++|++.+..+..+.  ++|+.|+|++|+++. +|..+.  ++|+.|||++|++..++...+...    
T Consensus       788 ----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~----  850 (876)
T 4ecn_A          788 ----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPY----  850 (876)
T ss_dssp             ----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--SSSCEEECCSCTTCEEECGGGHHH----
T ss_pred             ----------CcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhhc--CCCCEEECCCCCCCccChHHcccc----
Confidence                      2234666655544443  478888888888844 444444  588888888888888776554211    


Q ss_pred             CCCCCceEecCCcccc--ccC
Q psy5670         678 HKNIPDFYIGENPFQC--DCN  696 (1269)
Q Consensus       678 ~~~l~~l~l~~Np~~c--~c~  696 (1269)
                       .....+.+.+|+..+  +|+
T Consensus       851 -~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          851 -IEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             -HHTTCCEEECCTTSEEESCG
T ss_pred             -ccchheeecCCCccccCCCC
Confidence             122345667776654  665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.5e-37  Score=387.99  Aligned_cols=420  Identities=19%  Similarity=0.252  Sum_probs=301.9

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccc---------------------------------hhhhc-
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLA---------------------------------DHALD-  266 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------------~~~~~-  266 (1269)
                      .+++.|+|+++.+.+..+..|+++++|+.|+|++|.+....                                 +..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            47999999999999766678999999999999999651100                                 00000 


Q ss_pred             ------------------CCCCCcEEEcc--CCCCCCCCcccccCCCCCcEEEeeCCccccc-----------------C
Q psy5670         267 ------------------GLNSLTVLNLS--VNNLVNIPPELFNQSRDLKEVYLQNNSINVL-----------------A  309 (1269)
Q Consensus       267 ------------------~l~~L~~L~Ls--~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-----------------~  309 (1269)
                                        ....++.+.+.  .|+++++|. .|+++++|++|+|++|.+++.                 .
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              01112222222  455666654 467888888888888888873                 4


Q ss_pred             ccccc--CCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-Ccc-cCchhhcCC------CCCcEEEccCCcc
Q psy5670         310 PGIFN--VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNK-LDSSIFKDL------YRLQVLHLENNQI  379 (1269)
Q Consensus       310 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l  379 (1269)
                      |..++  ++++|++|++++|.+.+  ..+..+.++++|+.|++++|. +++ ..+..+..+      ++|++|++++|.+
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             chhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            55566  88888888888888776  336778888888888888887 776 444445554      7888888888888


Q ss_pred             ccccc-ccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchhh
Q psy5670         380 ESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPKV  457 (1269)
Q Consensus       380 ~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~  457 (1269)
                      +.++. ..|..+++|+.|++++|++++..+ .+..+++|+.|++++|.+..++ ..+..+++ |++|++++|.++.+|..
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~  395 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNI  395 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-HhhhhhcccCcEEEccCCcCcccchh
Confidence            86664 267888888888888888885555 7778888888888888887544 45777888 88888888888888876


Q ss_pred             hcCCC--CCcEEECCCCCCCccChhhhh-------ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccccccc
Q psy5670         458 LRNLH--SLKTLDLGDNLITEINNLSLN-------SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG  528 (1269)
Q Consensus       458 l~~l~--~L~~L~Ls~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~  528 (1269)
                      +..++  +|++|++++|.+++..+..+.       .+++|+.|+|++|.+..++...|..+++|++|+|++|+++.++..
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            66544  788888888888887776666       667888888888888888877777888888888888888877666


Q ss_pred             ccCCCC-------CccEEEcccccccccCCcCC--CCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670         529 TFDNNS-------NLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE  599 (1269)
Q Consensus       529 ~~~~~~-------~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~  599 (1269)
                      .+....       +|+.|+|++|.++.+|..+.  .+++|+.|++++|+++.                      ++.  .
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~----------------------ip~--~  531 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK----------------------FPT--Q  531 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS----------------------CCC--G
T ss_pred             HhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC----------------------cCh--h
Confidence            555433       77777777777777775554  66666666666666552                      222  2


Q ss_pred             ccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCC
Q psy5670         600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK  679 (1269)
Q Consensus       600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~  679 (1269)
                      +..+++|+.|++++|+                ++++|++.+..|..|..+++|+.|+|++|+|+.++....        +
T Consensus       532 ~~~l~~L~~L~Ls~N~----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--------~  587 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQR----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--------P  587 (636)
T ss_dssp             GGGCSSCCEEECCSCB----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--------T
T ss_pred             hhcCCCCCEEECCCCc----------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--------C
Confidence            3346677888887765                456677777777777777778888888877766655311        4


Q ss_pred             CCCceEecCCcccc
Q psy5670         680 NIPDFYIGENPFQC  693 (1269)
Q Consensus       680 ~l~~l~l~~Np~~c  693 (1269)
                      +|+.+++++||+.|
T Consensus       588 ~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          588 NISVLDIKDNPNIS  601 (636)
T ss_dssp             TCCEEECCSCTTCE
T ss_pred             cCCEEECcCCCCcc
Confidence            67777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.4e-35  Score=354.82  Aligned_cols=384  Identities=25%  Similarity=0.318  Sum_probs=248.7

Q ss_pred             CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670          30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ  109 (1269)
Q Consensus        30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~  109 (1269)
                      ++||..|.|.+.                   .+.|....++.+|      . .++++++|+|++|.    .+.+++.+|+
T Consensus         2 ~p~~~~c~~~~~-------------------~~~c~~~~l~~lp------~-l~~~l~~L~Ls~n~----i~~~~~~~~~   51 (455)
T 3v47_A            2 DPGTSECSVIGY-------------------NAICINRGLHQVP------E-LPAHVNYVDLSLNS----IAELNETSFS   51 (455)
T ss_dssp             -----CCEEETT-------------------EEECCSSCCSSCC------C-CCTTCCEEECCSSC----CCEECTTTTS
T ss_pred             CCccceeEEEcc-------------------ccCcCCCCcccCC------C-CCCccCEEEecCCc----cCcCChhHhc
Confidence            579999999753                   5788888887776      2 24667777777776    3455555677


Q ss_pred             CCcccceeEeccccCC-CCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc--CCccc
Q psy5670         110 TLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT--LPDAI  186 (1269)
Q Consensus       110 ~l~~L~~L~L~~~~i~-~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~--l~~~~  186 (1269)
                      ++++|++|+|++|.+. .+++.+|.++++|++|+++++..      ..+.+..| .++++|++|++++|.+.+  .+...
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~  124 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF------LQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNF  124 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT------CEECTTTT-TTCTTCCEEECTTSCCBTHHHHSST
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCcc------CccChhhc-cCcccCCEEeCCCCCCCccccCccc
Confidence            7777777777766654 45455555555555555543322      12334444 555555555555555543  12223


Q ss_pred             CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhc
Q psy5670         187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD  266 (1269)
Q Consensus       187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  266 (1269)
                      |..+++|++|+|++|++.+..+..                             .+.++++|++|++++|.+.+..+..+.
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A          125 FKPLTSLEMLVLRDNNIKKIQPAS-----------------------------FFLNMRRFHVLDLTFNKVKSICEEDLL  175 (455)
T ss_dssp             TTTCTTCCEEECCSSBCCSCCCCG-----------------------------GGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred             ccCcccCCEEECCCCccCccCccc-----------------------------ccCCCCcccEEeCCCCcccccChhhhh
Confidence            445555555555555554443322                             144444444444444444444444333


Q ss_pred             CC--CCCcEEEccCCCCCCCCcccc--------cCCCCCcEEEeeCCcccccCcccccCC---CCCCEEECcCCCCCccc
Q psy5670         267 GL--NSLTVLNLSVNNLVNIPPELF--------NQSRDLKEVYLQNNSINVLAPGIFNVL---TQLIVLDLSNNELTEEW  333 (1269)
Q Consensus       267 ~l--~~L~~L~Ls~n~l~~l~~~~f--------~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~  333 (1269)
                      .+  .+|+.|++++|.+..+++..+        ..+++|++|++++|.+++..+..+...   ++|+.|++++|......
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence            33  345555555555444433221        133455555555555554444333322   55566666555433211


Q ss_pred             c--------Cccccc--CCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670         334 V--------NAATFS--GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL  403 (1269)
Q Consensus       334 ~--------~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  403 (1269)
                      .        ....+.  ..++|+.|++++|.+.+..+..+..+++|++|++++|.++.+++..|..+++|+.|++++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence            1        111122  236899999999999999888899999999999999999999888899999999999999999


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh-hhcCCCCCcEEECCCCCCCccCh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINN  479 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~  479 (1269)
                      +++.+..+.++++|++|+|++|.+.++.+..|..+++|++|++++|+++.+|. .+..+++|++|++++|.+++..+
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99988889999999999999999999988899999999999999999998886 46889999999999999987654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.5e-35  Score=356.47  Aligned_cols=407  Identities=22%  Similarity=0.288  Sum_probs=246.2

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC-------------CcEEEccCCCCCCCCcc
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS-------------LTVLNLSVNNLVNIPPE  287 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~l~~~  287 (1269)
                      +.|++|++++|.+..+|+ .++++++|++|++++|.+.+..|..++++++             +++|++++|.++++|. 
T Consensus        11 ~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred             ccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence            456666666666644443 3566666666666666665555555555554             5899999999888875 


Q ss_pred             cccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCC
Q psy5670         288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY  367 (1269)
Q Consensus       288 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  367 (1269)
                         ..++|++|++++|.+++++.    .+++|+.|++++|.+.+  ++  .+  .++|++|++++|.+++++  .|+.++
T Consensus        89 ---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~--~~--~~~L~~L~L~~n~l~~lp--~~~~l~  153 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LS--DL--PPLLEYLGVSNNQLEKLP--ELQNSS  153 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CC--SC--CTTCCEEECCSSCCSSCC--CCTTCT
T ss_pred             ---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--cc--CC--CCCCCEEECcCCCCCCCc--ccCCCC
Confidence               24789999999998888653    24789999999988875  21  11  268889999999888865  388888


Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEcc
Q psy5670         368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN  447 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  447 (1269)
                      +|++|++++|.++.++..    ..+|++|++++|+++++.  .+.++++|+.|++++|.+.+++..    .++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECC
T ss_pred             CCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECc
Confidence            999999999888876542    358888888888888754  478888888888888888775431    2578888888


Q ss_pred             CCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccc
Q psy5670         448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA  527 (1269)
Q Consensus       448 ~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~  527 (1269)
                      +|.++.+|. +..+++|++|++++|.+++++.    .+++|+.|++++|.+..++..    +++|+.|++++|++++++.
T Consensus       224 ~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESC
T ss_pred             CCcCCcccc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccC
Confidence            888888874 7788888888888888887653    246788888888888777642    4678888888888877542


Q ss_pred             cccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccccccccccc
Q psy5670         528 GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT  607 (1269)
Q Consensus       528 ~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~  607 (1269)
                          ..++|+.|++++|.+++++..   .++|+.|++++|+++.++.  .+++|+.|++++|+++.++.     .+.+|+
T Consensus       295 ----~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp~-----~l~~L~  360 (454)
T 1jl5_A          295 ----LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-----LPQNLK  360 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCC
T ss_pred             ----cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc--cCCcCCEEECCCCccccccc-----hhhhcc
Confidence                136788888888887776532   2477888888887776543  24677788888887777665     246777


Q ss_pred             EEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEec
Q psy5670         608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIG  687 (1269)
Q Consensus       608 ~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~  687 (1269)
                      +|++++|++++++  .+|.++..|.  .|.+.+.+|..   +++|+.||+++|++++++.       +|  .++..+.++
T Consensus       361 ~L~L~~N~l~~l~--~ip~~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~-------iP--~sl~~L~~~  424 (454)
T 1jl5_A          361 QLHVEYNPLREFP--DIPESVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPD-------IP--ESVEDLRMN  424 (454)
T ss_dssp             EEECCSSCCSSCC--CCCTTCCEEE--CCC--------------------------------------------------
T ss_pred             EEECCCCCCCcCC--CChHHHHhhh--hcccccccccc---cCcCCEEECCCCcCCcccc-------ch--hhHhheeCc
Confidence            7888877777654  2455555543  34455544432   4789999999999987532       22  245566677


Q ss_pred             CCcccc
Q psy5670         688 ENPFQC  693 (1269)
Q Consensus       688 ~Np~~c  693 (1269)
                      +|.+.|
T Consensus       425 ~~~~~~  430 (454)
T 1jl5_A          425 SERVVD  430 (454)
T ss_dssp             ------
T ss_pred             CcccCC
Confidence            665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.2e-34  Score=341.85  Aligned_cols=416  Identities=23%  Similarity=0.263  Sum_probs=215.8

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCccc-------CCCcccEEEcCCCCCCccCc
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR-------CGINLRVLDLSNNSFDSLPA  238 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~  238 (1269)
                      .++|++|++++|.+..+|+. ++++++|++|++++|++.+..+..+..+..+.       ...++++|++++|.+++++.
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             cccchhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            35666666666666666654 46666666666666665544443333211000       00235777777777777654


Q ss_pred             ccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCC
Q psy5670         239 EGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ  318 (1269)
Q Consensus       239 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  318 (1269)
                        +  .++|++|++++|.+++++.    ..++|++|++++|+++.++..    .++|++|++++|.+++++  .|+++++
T Consensus        89 --~--~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~~~l~~  154 (454)
T 1jl5_A           89 --L--PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSF  154 (454)
T ss_dssp             --C--CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CCTTCTT
T ss_pred             --C--cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--ccCCCCC
Confidence              1  3677777777777777542    236777777777777766531    257777777777777754  3677777


Q ss_pred             CCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEc
Q psy5670         319 LIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM  398 (1269)
Q Consensus       319 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L  398 (1269)
                      |++|++++|.+++  ++ .   ...+|+.|++++|.+.+++  .+..+++|++|++++|.++.++..    .++|+.|++
T Consensus       155 L~~L~l~~N~l~~--lp-~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l  222 (454)
T 1jl5_A          155 LKIIDVDNNSLKK--LP-D---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVA  222 (454)
T ss_dssp             CCEEECCSSCCSC--CC-C---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEEC
T ss_pred             CCEEECCCCcCcc--cC-C---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEEC
Confidence            7777777777664  21 1   1246777777777777654  366777777777777777665432    246777777


Q ss_pred             cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC
Q psy5670         399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN  478 (1269)
Q Consensus       399 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~  478 (1269)
                      ++|.+..+.  .+..+++|++|++++|.+.+++.    ..++|+.|++++|.++.+|..   .++|++|++++|.++++.
T Consensus       223 ~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          223 GNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             CSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES
T ss_pred             cCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc
Confidence            777776443  36677777777777777766543    236777777777777776643   356777777777776643


Q ss_pred             hhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670         479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN  558 (1269)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~  558 (1269)
                      ..    .++|+.|++++|.+..++.    ..++|++|++++|++++++..    +++|+.|++++|+++.+|.   .+++
T Consensus       294 ~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~---~l~~  358 (454)
T 1jl5_A          294 EL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE---LPQN  358 (454)
T ss_dssp             CC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTT
T ss_pred             Cc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc---hhhh
Confidence            21    2567777777777655432    124677777777777664331    4667777777777776665   3566


Q ss_pred             CcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCccc
Q psy5670         559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI  638 (1269)
Q Consensus       559 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i  638 (1269)
                      |+.|++++|+++.++  .+|..+..|.. ++....++.     ..++|+.||+++|++++++  .+|.+++.|.+.+|.+
T Consensus       359 L~~L~L~~N~l~~l~--~ip~~l~~L~~-n~~~~~i~~-----~~~~L~~L~ls~N~l~~~~--~iP~sl~~L~~~~~~~  428 (454)
T 1jl5_A          359 LKQLHVEYNPLREFP--DIPESVEDLRM-NSHLAEVPE-----LPQNLKQLHVETNPLREFP--DIPESVEDLRMNSERV  428 (454)
T ss_dssp             CCEEECCSSCCSSCC--CCCTTCCEEEC-CC-------------------------------------------------
T ss_pred             ccEEECCCCCCCcCC--CChHHHHhhhh-ccccccccc-----ccCcCCEEECCCCcCCccc--cchhhHhheeCcCccc
Confidence            777777777666432  35555555432 111112221     1245666666666666542  3455566666655555


Q ss_pred             cccc
Q psy5670         639 SKVQ  642 (1269)
Q Consensus       639 ~~~~  642 (1269)
                      .+..
T Consensus       429 ~~~~  432 (454)
T 1jl5_A          429 VDPY  432 (454)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            4443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-32  Score=334.87  Aligned_cols=348  Identities=27%  Similarity=0.404  Sum_probs=212.5

Q ss_pred             cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670         165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL  244 (1269)
Q Consensus       165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  244 (1269)
                      .+++|+.|+++++.+..++.  +..+++|++|++++|.+.++++  +.      .+++|++|++++|.++.+++  ++++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~------~l~~L~~L~l~~n~l~~~~~--~~~l  111 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LK------NLTKLVDILMNNNQIADITP--LANL  111 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hh------ccccCCEEECCCCccccChh--hcCC
Confidence            34567777777776666654  4566677777777776666543  22      24566677777666666654  6666


Q ss_pred             CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670         245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL  324 (1269)
Q Consensus       245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  324 (1269)
                      ++|++|++++|.++++.+  +.++++|++|++++|.+..++.  +..+++|++|+++ +.+.+..+  +.++++|+.|++
T Consensus       112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l  184 (466)
T 1o6v_A          112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI  184 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEEC
Confidence            777777777766666543  6666777777777666666543  5666667777665 33444332  566667777777


Q ss_pred             cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670         325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      ++|.+..    ...+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.++  .+..+++|+.|++++|.+.
T Consensus       185 ~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          185 SSNKVSD----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC
T ss_pred             cCCcCCC----ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccc
Confidence            7766654    2335566666666666666665544  455666666666666666553  3556666666666666666


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc
Q psy5670         405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS  484 (1269)
Q Consensus       405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  484 (1269)
                      +..+  +..+++|+.|++++|.+.++.+  +..+++|+.|++++|.++.++. +..+++|++|++++|.++++.+  +..
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hcc
Confidence            5543  5566666666666666665544  5566666666666666665554 5556666666666666665544  455


Q ss_pred             cccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC
Q psy5670         485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG  550 (1269)
Q Consensus       485 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~  550 (1269)
                      +++|+.|++++|.+..++  .+..+++|+.|++++|++++..+  +..+++|+.|++++|.++.+|
T Consensus       330 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred             CccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence            666666666666665542  35556666666666666655544  455555555555555555544

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=100.00  E-value=2.8e-35  Score=299.77  Aligned_cols=158  Identities=35%  Similarity=0.643  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHhcCcccccccccccccCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHH
Q psy5670        1053 YRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDT 1132 (1269)
Q Consensus      1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~ 1132 (1269)
                      ++.++.+||+..++..        +..++++.|||||||+++|++||.++|.+.||++++||++|+++||+.||+.+.++
T Consensus        12 ~~~~~~L~yr~~~~~~--------~~~~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~   83 (178)
T 2j67_A           12 DLGTENLYFQSMKTTQ--------EQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISEN   83 (178)
T ss_dssp             --------------------------CCCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHH
T ss_pred             eeeeeeeeeecccccc--------cccCCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHH
Confidence            5567788998887743        45667899999999999999999988999999766899999999999999999999


Q ss_pred             HHHHHHhcceEEEEecccchhhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCH---HHHHHHhcCceEEcCC--
Q psy5670        1133 IVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDP---DIRLYLKSNTYLQWGD-- 1206 (1269)
Q Consensus      1133 i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~~---~l~~~l~~~~~l~w~~-- 1206 (1269)
                      |.++|++||++|+|+|++|++|+||.+|++.|++++++++ .+||||++++++.+++|+   +|+.+++++|||+|++  
T Consensus        84 i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~~~~~Lr~~l~~~t~l~W~~~~  163 (178)
T 2j67_A           84 IVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDR  163 (178)
T ss_dssp             HHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGGGSCTTCHHHHHHHHTTCSEECCSSG
T ss_pred             HHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCChhHHHHHHHHhcCCEEECCCCc
Confidence            9999999999999999999999999999999998888776 899999999999998987   9999999999999987  


Q ss_pred             ---cchHHHHHHhCC
Q psy5670        1207 ---KLFWEKLKFALP 1218 (1269)
Q Consensus      1207 ---~~Fw~~l~~~l~ 1218 (1269)
                         ++||++||+||.
T Consensus       164 ~~~~~FW~~Lr~al~  178 (178)
T 2j67_A          164 RKCGLFWANLRAAIN  178 (178)
T ss_dssp             GGHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHhC
Confidence               589999999983

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.1e-32  Score=328.93  Aligned_cols=346  Identities=27%  Similarity=0.423  Sum_probs=289.2

Q ss_pred             CCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCC
Q psy5670         189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL  268 (1269)
Q Consensus       189 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  268 (1269)
                      .+++|+.|+++++.+..++.  +      ..+++|++|++++|.++.+++  +.++++|++|++++|.+..+.+  +.++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~------~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l  111 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--V------EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL  111 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--G------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HhccccEEecCCCCCccCcc--h------hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCC
Confidence            45789999999999887653  2      336899999999999999875  8999999999999999998876  8999


Q ss_pred             CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEE
Q psy5670         269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL  348 (1269)
Q Consensus       269 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  348 (1269)
                      ++|++|++++|.++.+++  +..+++|++|++++|.+.++.  .+..+++|+.|++++ .+..    ...+.++++|+.|
T Consensus       112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~----~~~~~~l~~L~~L  182 (466)
T 1o6v_A          112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTD----LKPLANLTTLERL  182 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCC----CGGGTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccC----chhhccCCCCCEE
Confidence            999999999999999876  789999999999999998874  378999999999974 4443    3348889999999


Q ss_pred             EcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCC
Q psy5670         349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE  428 (1269)
Q Consensus       349 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  428 (1269)
                      ++++|.+..+.  .+..+++|++|++++|.+..+.+  +..+++|+.|++++|+++++.  .+..+++|+.|++++|.+.
T Consensus       183 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          183 DISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             ECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC
T ss_pred             ECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccc
Confidence            99999988764  37888999999999999887765  677889999999999888763  5778889999999999888


Q ss_pred             ccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcC
Q psy5670         429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK  508 (1269)
Q Consensus       429 ~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~  508 (1269)
                      +..+  +..+++|++|++++|.++.++. +..+++|++|++++|.++++.+  +..+++|+.|++++|.+..+++  +..
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence            8765  7888899999999998888876 7788889999999998888765  6788888889998888877665  678


Q ss_pred             CCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcc
Q psy5670         509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW  571 (1269)
Q Consensus       509 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~  571 (1269)
                      +++|+.|++++|+++++  ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.
T Consensus       330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            88888888888888876  357788888888888888887655 6777777777777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.9e-33  Score=338.22  Aligned_cols=333  Identities=25%  Similarity=0.348  Sum_probs=228.5

Q ss_pred             CCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccC
Q psy5670          31 QAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQT  110 (1269)
Q Consensus        31 ~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~  110 (1269)
                      .||..|+|...                 ...+.|....+..+|.      ..+..+++|+|++|.    ...+++.+|.+
T Consensus         2 ~Cp~~C~C~~~-----------------~~~v~c~~~~l~~ip~------~~~~~l~~L~L~~n~----l~~~~~~~~~~   54 (477)
T 2id5_A            2 GCPPRCECSAQ-----------------DRAVLCHRKRFVAVPE------GIPTETRLLDLGKNR----IKTLNQDEFAS   54 (477)
T ss_dssp             CCSTTCEEETT-----------------TTEEECCSCCCSSCCS------CCCTTCSEEECCSSC----CCEECTTTTTT
T ss_pred             cccCCCeECCC-----------------CCEEEeCCCCcCcCCC------CCCCCCcEEECCCCc----cceECHhHccC
Confidence            69999999741                 1268898888877762      124455566666555    33444445555


Q ss_pred             CcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCC
Q psy5670         111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPL  190 (1269)
Q Consensus       111 l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  190 (1269)
                      +++|++|+|++|.++.+.+                              .+| .++++|++|+|++|.+..++...|.++
T Consensus        55 l~~L~~L~L~~n~i~~~~~------------------------------~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l  103 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEP------------------------------GAF-NNLFNLRTLGLRSNRLKLIPLGVFTGL  103 (477)
T ss_dssp             CTTCCEEECTTSCCCEECT------------------------------TTT-TTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred             CCCCCEEECCCCccCEeCh------------------------------hhh-hCCccCCEEECCCCcCCccCcccccCC
Confidence            5555555555555544443                              444 556666666666666666666666666


Q ss_pred             CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670         191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS  270 (1269)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  270 (1269)
                      ++|++|+|++|++....+..|..      +++|++|++++|.++.+.+..|.++++|++|++++|.++.+.+..|.++++
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  177 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQD------LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG  177 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred             CCCCEEECCCCccccCChhHccc------cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence            67777777776666655544433      466777777777777766666777777777777777777777667777777


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670         271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI  350 (1269)
Q Consensus       271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  350 (1269)
                      |+.|++++|.+..+++..|..+++|+.|++++|...+..+.......+|+.|++++|.+..  ++...+..+++|+.|++
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEEC
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeEC
Confidence            7777777777777776667777777777777765444333333344577777777777765  44556777777888888


Q ss_pred             CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCc
Q psy5670         351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY  429 (1269)
Q Consensus       351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  429 (1269)
                      ++|.+..+.+..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.+..|..+++|+.|+|++|.+..
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            8877777777777777888888888888887777777888888888888888888777777788888888888887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=326.79  Aligned_cols=301  Identities=27%  Similarity=0.385  Sum_probs=183.7

Q ss_pred             cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670         222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ  301 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  301 (1269)
                      +++.|+|++|.++.+++..|.++++|++|+|++|.++.+.+.+|.++++|++|+|++|+++.++...|..+++|++|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            56666666666666666667777777777777777777666667777777777777777777776666677777777777


Q ss_pred             CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670         302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES  381 (1269)
Q Consensus       302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  381 (1269)
                      +|.+.++.+..|.++++|+.|++++|.+..  +.+..|.++++|+.|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCccccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            777776666666677777777777776655  445556666666666666666666666666666666666666666666


Q ss_pred             cccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCC
Q psy5670         382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL  461 (1269)
Q Consensus       382 i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  461 (1269)
                      ++...|..+++|+.|++++|...+..+.......+|+.|++++|.+..+....+                       ..+
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------------~~l  247 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----------------------RHL  247 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----------------------TTC
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----------------------cCc
Confidence            665566666666666666654433322222222344444444444444444444                       444


Q ss_pred             CCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEc
Q psy5670         462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL  541 (1269)
Q Consensus       462 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L  541 (1269)
                      ++|++|++++|.++++.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|+|++|+++++++..|..+++|+.|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            55555555555555544444555555555555555555554445555555555555555555555555555555666666


Q ss_pred             cccccc
Q psy5670         542 DGNYLT  547 (1269)
Q Consensus       542 ~~n~l~  547 (1269)
                      ++|.+.
T Consensus       328 ~~N~l~  333 (477)
T 2id5_A          328 DSNPLA  333 (477)
T ss_dssp             CSSCEE
T ss_pred             cCCCcc
Confidence            655554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=2.7e-31  Score=319.78  Aligned_cols=169  Identities=29%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             hhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCccc
Q psy5670         161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG  240 (1269)
Q Consensus       161 ~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  240 (1269)
                      .+ +++++|++|++++|.+.++|.  |..+++|++|++++|++++++   +      ..+++|++|++++|.++.++   
T Consensus        37 ~~-~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~---~------~~l~~L~~L~Ls~N~l~~~~---  101 (457)
T 3bz5_A           37 SE-EQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD---L------SQNTNLTYLACDSNKLTNLD---  101 (457)
T ss_dssp             EH-HHHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC---C------TTCTTCSEEECCSSCCSCCC---
T ss_pred             Ch-hHcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc---c------ccCCCCCEEECcCCCCceee---
Confidence            45 778888888888888887763  677788888888888777652   2      22567777777777777653   


Q ss_pred             CCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCC
Q psy5670         241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLI  320 (1269)
Q Consensus       241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  320 (1269)
                      ++++++|++|++++|.+++++   ++.+++|++|++++|+++.++   +..+++|++|++++|...+..  .+..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            666677777777777666652   566666666666666666553   345555555555555322211  134445555


Q ss_pred             EEECcCCCCCccccCcccccCCCCccEEEcCCCCCcc
Q psy5670         321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK  357 (1269)
Q Consensus       321 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  357 (1269)
                      .|++++|.+++  ++   +..+++|+.|++++|.+++
T Consensus       174 ~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          174 TLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             EEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSC
T ss_pred             EEECCCCccce--ec---cccCCCCCEEECcCCcCCe
Confidence            55555554443  11   3344444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=2e-31  Score=320.86  Aligned_cols=346  Identities=23%  Similarity=0.293  Sum_probs=191.8

Q ss_pred             CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670         220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY  299 (1269)
Q Consensus       220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  299 (1269)
                      +++|++|++++|.+++++  .++.+++|++|++++|.+++++   ++.+++|++|++++|+++.++   |..+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence            456777777777766664  3666677777777777666652   566666777777766666654   45666666666


Q ss_pred             eeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-CcccCchhhcCCCCCcEEEccCCc
Q psy5670         300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNKLDSSIFKDLYRLQVLHLENNQ  378 (1269)
Q Consensus       300 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  378 (1269)
                      +++|.+++++   ++.+++|+.|++++|.+++  +   .+..+++|+.|++++|. +..+   .+..+++|++|++++|.
T Consensus       113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTE--I---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCSSCCSCCC---CTTCTTCCEEECTTSCCSC--C---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred             CCCCcCCeec---CCCCCcCCEEECCCCccce--e---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence            6666666642   5666666666666666654  2   25556666666666663 2222   24455566666666665


Q ss_pred             ccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhh
Q psy5670         379 IESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL  458 (1269)
Q Consensus       379 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l  458 (1269)
                      ++.++   +..+++|+.|++++|+++++   .+..+++|+.|++++|++.+++   +..+++|+.|++++|.++.+|  +
T Consensus       182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~--~  250 (457)
T 3bz5_A          182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--V  250 (457)
T ss_dssp             CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC--H
Confidence            55543   44555555555555555554   2444555555555555555532   444555555555555555444  2


Q ss_pred             cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCcc
Q psy5670         459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV  537 (1269)
Q Consensus       459 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~  537 (1269)
                      ..+++|+.|++++|              +|+.|++++|.+ +.++   +..+++|+.|++++|...+.            
T Consensus       251 ~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~------------  301 (457)
T 3bz5_A          251 STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYL------------  301 (457)
T ss_dssp             TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCE------------
T ss_pred             HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccce------------
Confidence            34444555554443              233444444443 2222   23444555555555443222            


Q ss_pred             EEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccc
Q psy5670         538 AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT  617 (1269)
Q Consensus       538 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~  617 (1269)
                                 +|.   ..++|+.|++++|           ++|+.|++++|+++.++    +..+++|+.|++++|+++
T Consensus       302 -----------l~~---~~~~L~~L~l~~~-----------~~L~~L~L~~N~l~~l~----l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          302 -----------LDC---QAAGITELDLSQN-----------PKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             -----------EEC---TTCCCSCCCCTTC-----------TTCCEEECTTCCCSCCC----CTTCTTCSEEECCSSCCC
T ss_pred             -----------ecc---CCCcceEechhhc-----------ccCCEEECCCCcccccc----cccCCcCcEEECCCCCCC
Confidence                       221   1233333344433           24555666666655542    445667777777777777


Q ss_pred             cccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccc
Q psy5670         618 ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN  664 (1269)
Q Consensus       618 ~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~  664 (1269)
                      ++      ++|..|++++|.+++..     .+..|..+++++|++++
T Consensus       353 ~l------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g  388 (457)
T 3bz5_A          353 DF------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTI  388 (457)
T ss_dssp             BC------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEE
T ss_pred             Cc------cccccccccCCcEEecc-----eeeecCccccccCcEEE
Confidence            64      24566667777776651     33456667777777775

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.97  E-value=8.4e-33  Score=277.09  Aligned_cols=136  Identities=25%  Similarity=0.483  Sum_probs=118.4

Q ss_pred             CceeEEEEcccCCHHHHH-----------HHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccc
Q psy5670        1083 KLFDAFVSYSSKDEAFVA-----------EELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENF 1151 (1269)
Q Consensus      1083 ~~yDafvsy~~~d~~~v~-----------~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~ 1151 (1269)
                      |.|||||||+++|++||.           +.+.+.||+ ++||++|+++||+.||+.+.++|.++|++|||+|+|+|++|
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y   79 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNY   79 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcC-CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccch
Confidence            579999999999976654           335567996 68999999999999999999999999999999999999999


Q ss_pred             h-hhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCCCCC---CCCHHHHHHHhcCceEEcCC-------cchHHHHHHhCCC
Q psy5670        1152 I-KSEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQK---DLDPDIRLYLKSNTYLQWGD-------KLFWEKLKFALPD 1219 (1269)
Q Consensus      1152 ~-~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~---~~~~~l~~~l~~~~~l~w~~-------~~Fw~~l~~~l~~ 1219 (1269)
                      + +|+||.+|++.|++++++++ .+||+|+++++++.   +..+.|+.+++++|||+|++       ++||++||||||.
T Consensus        80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~~~~~~~~L~~~l~~~t~l~W~~p~~~~~~~~FW~~Lr~amP~  159 (159)
T 1t3g_A           80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEMPF  159 (159)
T ss_dssp             HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHHHHHHHHHHHHTCSSEEEEECCSGGGGSSSCHHHHHHHHHSCC
T ss_pred             hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccccccchHHHHHHHhhCCeEeCCCCcccchHHHHHHHHHHhCCC
Confidence            8 99999999999999998887 89999999999752   22357999999999999976       4999999999994

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.97  E-value=5.8e-33  Score=276.07  Aligned_cols=138  Identities=39%  Similarity=0.731  Sum_probs=129.8

Q ss_pred             CCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHH
Q psy5670        1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYE 1160 (1269)
Q Consensus      1081 ~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e 1160 (1269)
                      +++.|||||||+++|++||.++|.+.||++++||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|+||.+|
T Consensus         2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            46899999999999999999889999997557999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-CeEEEEEeCCCCCCCCC---HHHHHHHhcCceEEcCC-----cchHHHHHHhCC
Q psy5670        1161 FKSAHHQVLRGK-KRLIVILLGEVPQKDLD---PDIRLYLKSNTYLQWGD-----KLFWEKLKFALP 1218 (1269)
Q Consensus      1161 ~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~ 1218 (1269)
                      ++.|++++++++ .++|+|++++++++.+|   ++|+.+++++|||+|++     ++||++||+||.
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p~~~~~Lr~~l~~~t~l~W~~~~~~~~~FW~~Lr~al~  148 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIK  148 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSEECCSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChhhcChHHHHHHHHhcCCCEEECCCCCccchHHHHHHHHHhc
Confidence            999998887766 89999999999998887   58999999999999987     699999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.3e-30  Score=306.95  Aligned_cols=310  Identities=22%  Similarity=0.318  Sum_probs=152.3

Q ss_pred             CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670         167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR  246 (1269)
Q Consensus       167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  246 (1269)
                      ++|++|+++++.+..+|...|..+++|++|++++|++.++++..|..      +++|++|++++|.++.+++..|+++++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC------CCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            44444555544444444444444444444444444444333322222      234444444444444444444444444


Q ss_pred             CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670         247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN  326 (1269)
Q Consensus       247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  326 (1269)
                      |++|++++|.++.+++..|.++++|++|++++|++..+++..|..+++|++|++++|.++++.   +..+++|+.|++++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY  195 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCS
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccc
Confidence            444444444444444333444444444444444444444444444444444444444444332   23344444444444


Q ss_pred             CCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc
Q psy5670         327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI  406 (1269)
Q Consensus       327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~  406 (1269)
                      |.+..       +...++                        |++|++++|.+..++..   ..++|+.|++++|.+++.
T Consensus       196 n~l~~-------~~~~~~------------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          196 NLLST-------LAIPIA------------------------VEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT  241 (390)
T ss_dssp             SCCSE-------EECCSS------------------------CSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC
T ss_pred             ccccc-------cCCCCc------------------------ceEEECCCCeeeecccc---ccccccEEECCCCCCccc
Confidence            44332       111123                        33333333333333221   123444444444444443


Q ss_pred             CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670         407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH  486 (1269)
Q Consensus       407 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  486 (1269)
                        ..+..+++|++|++++|.+.++.+..|..+++|++|++++|.++.+|..+..+++|++|++++|.++++++ .+..++
T Consensus       242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~  318 (390)
T 3o6n_A          242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFD  318 (390)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHT
T ss_pred             --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-cccccC
Confidence              23445555555555555555555555555666666666666666555555556666666666666665433 355666


Q ss_pred             cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccc
Q psy5670         487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV  525 (1269)
Q Consensus       487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~  525 (1269)
                      +|+.|++++|.+..++   +..+++|+.|++++|++...
T Consensus       319 ~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          319 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             cCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence            6777777777766654   45667777777777776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4.1e-30  Score=304.88  Aligned_cols=308  Identities=21%  Similarity=0.310  Sum_probs=235.3

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL  300 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  300 (1269)
                      .+++.|++++|.++.+++..|.++++|++|++++|.+..+.+.+|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45666666666666666555566666666666666666666556666666666666666666666666666666666666


Q ss_pred             eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670         301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE  380 (1269)
Q Consensus       301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  380 (1269)
                      ++|.++.+++..|.++++|++|++++|.+..  +.+..+.++++|+.|++++|.++.++   +..+++|+.|++++|.++
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence            6666666666556666666666666666655  44555666777777777777766654   445678888888888877


Q ss_pred             ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhc
Q psy5670         381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLR  459 (1269)
Q Consensus       381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~  459 (1269)
                      .+.     ..++|+.|++++|.+..+...   ..++|+.|++++|.+.+.  ..+..+++|++|++++|.++.+ |..+.
T Consensus       200 ~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 TLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            553     346899999999999887543   347899999999999986  4688999999999999999976 67889


Q ss_pred             CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670         460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI  539 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L  539 (1269)
                      .+++|++|++++|.+++++. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.++   +..+++|+.|
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L  344 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL  344 (390)
T ss_dssp             TCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred             ccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence            99999999999999998754 456789999999999999988765 678899999999999998875   6678899999


Q ss_pred             Ecccccccc
Q psy5670         540 RLDGNYLTD  548 (1269)
Q Consensus       540 ~L~~n~l~~  548 (1269)
                      ++++|.+..
T Consensus       345 ~l~~N~~~~  353 (390)
T 3o6n_A          345 TLSHNDWDC  353 (390)
T ss_dssp             ECCSSCEEH
T ss_pred             EcCCCCccc
Confidence            999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.6e-29  Score=294.96  Aligned_cols=283  Identities=26%  Similarity=0.412  Sum_probs=135.1

Q ss_pred             CCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670         188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG  267 (1269)
Q Consensus       188 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  267 (1269)
                      ..+++|++|+++++.+..++.  +      ..+++|++|++++|.++.+++  +.++++|++|++++|.++.+.  ++.+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~--~------~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~  108 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG--I------EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQN  108 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT--G------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             hhcccccEEEEeCCccccchh--h------hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcC
Confidence            355666777777666655432  1      224566666666666666544  666666666666666665542  3566


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccE
Q psy5670         268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV  347 (1269)
Q Consensus       268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  347 (1269)
                      +++|++|++++|.+..+++  +..+++|++|++++|......+. +..+++|+.|++++|.+..    ...+..+++|+.
T Consensus       109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~  181 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD----VTPIANLTDLYS  181 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC----CGGGGGCTTCSE
T ss_pred             CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC----chhhccCCCCCE
Confidence            6666666666666655544  45555566666655533322221 4555555555555555443    112444455555


Q ss_pred             EEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCC
Q psy5670         348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL  427 (1269)
Q Consensus       348 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  427 (1269)
                      |++++|.+.++.+  +..+++|+.|++++|.+..+..  +..+++|+.|++++|++++..+  +..+++|++|++++|.+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            5555554444332  3444444444444444444332  3344444444444444443332  33344444444444444


Q ss_pred             CccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670         428 EYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       428 ~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  498 (1269)
                      ..+  ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            333  12333344444444444433332 233333333333333333333333333333333333333333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.1e-29  Score=293.90  Aligned_cols=305  Identities=26%  Similarity=0.423  Sum_probs=222.2

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ..+++|++|+++++.+..++.  +..+++|++|++++|+++++++  +.      .+++|++|++++|.++.++  .+.+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~------~l~~L~~L~L~~n~i~~~~--~~~~  108 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LS------NLVKLTNLYIGTNKITDIS--ALQN  108 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hh------cCCcCCEEEccCCcccCch--HHcC
Confidence            567788888888887777764  6777888888888887776654  32      3577888888888777763  4777


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +++|++|++++|.+..+.+  +..+++|+.|++++|......+. +..+++|++|++++|.+.++.+  +..+++|+.|+
T Consensus       109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            8888888888888777654  77788888888888754433333 6777888888888887777654  67778888888


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL  403 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  403 (1269)
                      +++|.+.+  +  ..+..+++|+.|++++|.+....+  +..+++|++|++++|.++.+++  +..+++|+.|++++|.+
T Consensus       184 l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          184 LNYNQIED--I--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CTTSCCCC--C--GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccCCcccc--c--ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            88887765  2  236777788888888887776655  6677788888888888777665  67778888888888877


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSL  482 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~  482 (1269)
                      +++  ..+..+++|+.|++++|.+.++  ..+..+++|+.|++++|.++.. |..+..+++|++|++++|.++++.+  +
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~  329 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L  329 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence            765  3467777888888888877776  3467778888888888877754 3557777888888888888777765  6


Q ss_pred             hccccCCeeeccCCcCC
Q psy5670         483 NSLHQLAGLRLTENNIS  499 (1269)
Q Consensus       483 ~~l~~L~~L~Ls~n~l~  499 (1269)
                      ..+++|+.|++++|.++
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            66777777777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2e-29  Score=315.65  Aligned_cols=310  Identities=22%  Similarity=0.319  Sum_probs=169.2

Q ss_pred             CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670         167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR  246 (1269)
Q Consensus       167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  246 (1269)
                      ++++.|++++|.+..+|+..|..+++|++|+|++|.+.++++..|..      +++|++|+|++|.++.+++..|+++++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC------CCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            44445555555555555544444444444444444444433333222      234444444444444444444444444


Q ss_pred             CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670         247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN  326 (1269)
Q Consensus       247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  326 (1269)
                      |++|+|++|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++++.   +..+++|+.|++++
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~  201 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY  201 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence            444444444444444444444444444444444444444444444444444444444444432   23344444555544


Q ss_pred             CCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc
Q psy5670         327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI  406 (1269)
Q Consensus       327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~  406 (1269)
                      |.+.+       +....                        +|+.|++++|.+..++...   .++|+.|++++|.+++.
T Consensus       202 n~l~~-------l~~~~------------------------~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          202 NLLST-------LAIPI------------------------AVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT  247 (597)
T ss_dssp             SCCSE-------EECCT------------------------TCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC
T ss_pred             Ccccc-------ccCCc------------------------hhheeeccCCccccccccc---CCCCCEEECCCCCCCCC
Confidence            44332       11122                        3444444444444333221   13455555555555543


Q ss_pred             CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670         407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH  486 (1269)
Q Consensus       407 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  486 (1269)
                        ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|.++.+|..+..+++|++|+|++|.++.++. .+..++
T Consensus       248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~  324 (597)
T 3oja_B          248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFD  324 (597)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHT
T ss_pred             --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-ccccCC
Confidence              34556666666666666666666666677777777777777777776666667777888888877776543 456778


Q ss_pred             cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccc
Q psy5670         487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV  525 (1269)
Q Consensus       487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~  525 (1269)
                      +|+.|+|++|.+..++   +..+++|+.|++++|++...
T Consensus       325 ~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          325 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            8888888888887665   56778899999999987654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=5.9e-29  Score=311.30  Aligned_cols=308  Identities=21%  Similarity=0.310  Sum_probs=243.8

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL  300 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  300 (1269)
                      .+++.|++++|.+..+++..|.++++|+.|++++|.++++.+..|.++++|++|+|++|.++.+++..|..+++|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            45666667766666666666666777777777777777766666777777777777777777777666677777777777


Q ss_pred             eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670         301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE  380 (1269)
Q Consensus       301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  380 (1269)
                      ++|.++++++..|+++++|+.|++++|.+.+  +.+..|.++++|+.|++++|.++.++   +..+++|+.|++++|.++
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            7777777766666777777777777777765  44556777777777777777777664   445678899999998887


Q ss_pred             ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhc
Q psy5670         381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLR  459 (1269)
Q Consensus       381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~  459 (1269)
                      .+.     ..++|+.|++++|.+..+....   .++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.++.+ |..+.
T Consensus       206 ~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            653     4568999999999998776533   36899999999999985  5688999999999999999976 67899


Q ss_pred             CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670         460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI  539 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L  539 (1269)
                      .+++|++|+|++|.+++++. .+..+++|+.|+|++|.+..++.. +..+++|+.|+|++|++++++   +..+++|+.|
T Consensus       276 ~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L  350 (597)
T 3oja_B          276 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL  350 (597)
T ss_dssp             TCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred             CccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence            99999999999999999754 456789999999999999988865 688999999999999998875   5667899999


Q ss_pred             Ecccccccc
Q psy5670         540 RLDGNYLTD  548 (1269)
Q Consensus       540 ~L~~n~l~~  548 (1269)
                      ++++|.+..
T Consensus       351 ~l~~N~~~~  359 (597)
T 3oja_B          351 TLSHNDWDC  359 (597)
T ss_dssp             ECCSSCEEH
T ss_pred             EeeCCCCCC
Confidence            999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=295.79  Aligned_cols=278  Identities=22%  Similarity=0.296  Sum_probs=208.7

Q ss_pred             EEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCccc
Q psy5670         561 WLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLI  638 (1269)
Q Consensus       561 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i  638 (1269)
                      .++.+++.++.++. .+|+.++.|+|++|+++.++. ..+..+++|++|+|++|+|+++.+..+.  .+|++|+|++|++
T Consensus        47 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           47 KVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             EEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            33334444433332 233455555555555555443 1244566777777777777776655443  4777777777777


Q ss_pred             ccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccC
Q psy5670         639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLD  718 (1269)
Q Consensus       639 ~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~  718 (1269)
                      +.+.+..|..+++|+.|+|++|+|+.++...+.     .+                                        
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l----------------------------------------  159 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----RI----------------------------------------  159 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----TC----------------------------------------
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhh-----hC----------------------------------------
Confidence            777777777778888888887777655432220     11                                        


Q ss_pred             ccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCC
Q psy5670         719 TVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLP  798 (1269)
Q Consensus       719 ~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p  798 (1269)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (440)
T 3zyj_A          160 --------------------------------------------------------------------------------  159 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcEEEecC-CCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCccc
Q psy5670         799 PRIPMDATELYLDG-NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENL  877 (1269)
Q Consensus       799 ~~~p~~~~~l~l~~-n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  877 (1269)
                          .++++|++++ |.+..++...|.++++|+.|+|++|+++.++  .|..+++|+.|+|++|+|+.+.+..|.++++|
T Consensus       160 ----~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  233 (440)
T 3zyj_A          160 ----PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL  233 (440)
T ss_dssp             ----TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ----cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC
Confidence                1235566666 5666777778888999999999999999886  48889999999999999999999999999999


Q ss_pred             CeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670         878 RELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVH  955 (1269)
Q Consensus       878 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~  955 (1269)
                      ++|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++. | .+++|+.|+|++|||.|||++ .||.+|+++.. ...
T Consensus       234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l-~~l~~~~~~~~-~~~  311 (440)
T 3zyj_A          234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI-LWLSWWIKDMA-PSN  311 (440)
T ss_dssp             CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT-HHHHHHHHTTS-CSS
T ss_pred             CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc-hHHHHHHHhcc-ccC
Confidence            9999999999999999999999999999999999999988 6 789999999999999999996 79999998753 222


Q ss_pred             ccCcceeccCCccceeee
Q psy5670         956 DISQIRCMTGSEVGFTIM  973 (1269)
Q Consensus       956 ~~~~~~C~~p~~~~~~~~  973 (1269)
                      ....++|..|+..+|..+
T Consensus       312 ~~~~~~C~~P~~l~g~~l  329 (440)
T 3zyj_A          312 TACCARCNTPPNLKGRYI  329 (440)
T ss_dssp             CSCCCBEEESTTTTTCBC
T ss_pred             CccccCCCChhHhcCccH
Confidence            345689999998876433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4e-28  Score=280.71  Aligned_cols=291  Identities=25%  Similarity=0.398  Sum_probs=190.0

Q ss_pred             CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670         191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS  270 (1269)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  270 (1269)
                      .+++.++++++.+..++...         .++|+.|++++|.++.+++..|.++++|++|++++|.++++.+..|.++++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~---------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL---------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK  101 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC---------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCCeEEEecCCCccccCccC---------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence            36777888777777654321         246777888888877777767777788888888877777777777777777


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670         271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI  350 (1269)
Q Consensus       271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  350 (1269)
                      |++|++++|+++.+|...+   ++|++|++++|.++++.+..|.++++|+.|++++|.+.........            
T Consensus       102 L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------  166 (330)
T 1xku_A          102 LERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA------------  166 (330)
T ss_dssp             CCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG------------
T ss_pred             CCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh------------
Confidence            7777777777777766543   5677777777777776666666677777777776666432222333            


Q ss_pred             CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCcc
Q psy5670         351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI  430 (1269)
Q Consensus       351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  430 (1269)
                                  +..+++|++|++++|.++.++...+   ++|+.|++++|+++++.+..+..+++|+.|++++|.+.++
T Consensus       167 ------------~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          167 ------------FQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             ------------GGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ------------ccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence                        4444455555555555554443222   5666666666666666666666777777777777777777


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc------ccCCeeeccCCcCC--CCC
Q psy5670         431 EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL------HQLAGLRLTENNIS--NIS  502 (1269)
Q Consensus       431 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~--~i~  502 (1269)
                      .+..+..+++|++|++++|.++.+|..+..+++|++|++++|.++++....|...      ..|+.|++++|++.  .++
T Consensus       232 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~  311 (330)
T 1xku_A          232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  311 (330)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence            6667777788888888888888888777778888888888888887776555322      34445555555542  233


Q ss_pred             hhhhcCCCCCCEEEcCCC
Q psy5670         503 KGVFEKLSVLTILNLASN  520 (1269)
Q Consensus       503 ~~~f~~l~~L~~L~Ls~n  520 (1269)
                      +..|..+.+|+.++|++|
T Consensus       312 ~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGGTTCCCGGGEEC---
T ss_pred             ccccccccceeEEEeccc
Confidence            344444444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.7e-28  Score=293.71  Aligned_cols=276  Identities=21%  Similarity=0.289  Sum_probs=208.0

Q ss_pred             EEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCccc
Q psy5670         561 WLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLI  638 (1269)
Q Consensus       561 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i  638 (1269)
                      .++.++..++.++. .+|+.++.|+|++|+|+.++. ..+..+++|+.|+|++|+|+++.+..+.  .+|++|+|++|++
T Consensus        58 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEECCCCcCccCC-CCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            33444444443331 234455566666666555433 1234567778888888877777655443  4777888888887


Q ss_pred             ccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccC
Q psy5670         639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLD  718 (1269)
Q Consensus       639 ~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~  718 (1269)
                      +++.+..|..+++|+.|+|++|+|+.++...+.     .+                                        
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l----------------------------------------  170 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----RV----------------------------------------  170 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----TC----------------------------------------
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHh-----cC----------------------------------------
Confidence            777777777778888888888777655432220     11                                        


Q ss_pred             ccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCC
Q psy5670         719 TVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLP  798 (1269)
Q Consensus       719 ~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p  798 (1269)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (452)
T 3zyi_A          171 --------------------------------------------------------------------------------  170 (452)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcEEEecC-CCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCccc
Q psy5670         799 PRIPMDATELYLDG-NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENL  877 (1269)
Q Consensus       799 ~~~p~~~~~l~l~~-n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  877 (1269)
                          ..++.|++++ |.+..++...|.++++|+.|+|++|+++.++  .|..+++|+.|+|++|+++.+.+..|.++++|
T Consensus       171 ----~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          171 ----PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             ----TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             ----CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCC
Confidence                1235566665 5666777778888999999999999999885  48889999999999999999999999999999


Q ss_pred             CeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670         878 RELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVH  955 (1269)
Q Consensus       878 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~  955 (1269)
                      ++|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++. + .+++|+.|+|++|||.|||++ .||.+|+++... ..
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~-~~l~~~l~~~~~-~~  322 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI-LWLAWWLREYIP-TN  322 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT-HHHHHHHHHHC----
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc-hHHHHHHHHhCc-cC
Confidence            9999999999999999999999999999999999999988 6 789999999999999999996 799999987532 22


Q ss_pred             ccCcceeccCCcccee
Q psy5670         956 DISQIRCMTGSEVGFT  971 (1269)
Q Consensus       956 ~~~~~~C~~p~~~~~~  971 (1269)
                      ....++|..|...+|.
T Consensus       323 ~~~~~~C~~P~~l~g~  338 (452)
T 3zyi_A          323 STCCGRCHAPMHMRGR  338 (452)
T ss_dssp             CCSSCBEEESTTTTTC
T ss_pred             CccCcEeCCchHhccc
Confidence            3346799999988663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.8e-28  Score=282.16  Aligned_cols=289  Identities=26%  Similarity=0.411  Sum_probs=199.3

Q ss_pred             CCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCC
Q psy5670         192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL  271 (1269)
Q Consensus       192 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  271 (1269)
                      +++.++++++.+..++...         .++|+.|++++|.++.+++..|.++++|++|++++|.++.+.+.+|.++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCCccccCCCC---------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            6788888888877665422         2468888888888888877778888888888888888888877788888888


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcC
Q psy5670         272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA  351 (1269)
Q Consensus       272 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls  351 (1269)
                      ++|++++|+++.+|...+   ++|++|++++|.++.+++..|.++++|+.|++++|.+......+..+..+ +       
T Consensus       105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~-------  173 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K-------  173 (332)
T ss_dssp             CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-------
T ss_pred             CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-------
Confidence            888888888887776654   67778888877777777766777777777777777665322223333333 4       


Q ss_pred             CCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccC
Q psy5670         352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE  431 (1269)
Q Consensus       352 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  431 (1269)
                                       |+.|++++|.++.++...+   ++|+.|++++|.+++..+..+..+++|+.|++++|.+.++.
T Consensus       174 -----------------L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          174 -----------------LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             -----------------CSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             -----------------cCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence                             4444444454444443221   45666666666666666666777777777777777777777


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc------ccCCeeeccCCcCC--CCCh
Q psy5670         432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL------HQLAGLRLTENNIS--NISK  503 (1269)
Q Consensus       432 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~--~i~~  503 (1269)
                      +..+..+++|++|++++|.++.+|..+..+++|++|++++|.++++....|...      ..|+.|++++|++.  .+++
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            777777888888888888888888778888888888888888887776655432      34555566655553  4455


Q ss_pred             hhhcCCCCCCEEEcCCC
Q psy5670         504 GVFEKLSVLTILNLASN  520 (1269)
Q Consensus       504 ~~f~~l~~L~~L~Ls~n  520 (1269)
                      ..|..+++|+.+++++|
T Consensus       314 ~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGTTBCCSTTEEC---
T ss_pred             ccccccchhhhhhcccc
Confidence            55555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.7e-28  Score=279.60  Aligned_cols=294  Identities=23%  Similarity=0.336  Sum_probs=225.0

Q ss_pred             CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670         168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL  247 (1269)
Q Consensus       168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  247 (1269)
                      +|+.++++++.+..+|...   .++|++|++++|++..+++..|..      +++|++|++++|.++.+.+..|+++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKG------LQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhC------CCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            7999999999999999865   378999999999999887766654      6899999999999999988899999999


Q ss_pred             CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccc--cCcccccCCCCCCEEECc
Q psy5670         248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV--LAPGIFNVLTQLIVLDLS  325 (1269)
Q Consensus       248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~  325 (1269)
                      ++|++++|.++.++...+   ++|++|++++|+++.+++..|..+++|++|++++|.++.  ..+..|..+ +|+.|+++
T Consensus       105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            999999999998766443   899999999999999999999999999999999999964  667778888 99999999


Q ss_pred             CCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccc
Q psy5670         326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR  405 (1269)
Q Consensus       326 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~  405 (1269)
                      +|.+..  ++. .+.  ++|++|++++|.+.++.+..+..+++|+.|++++|.++.+++..|..+++|+.|++++|+++.
T Consensus       181 ~n~l~~--l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  255 (332)
T 2ft3_A          181 EAKLTG--IPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR  255 (332)
T ss_dssp             SSBCSS--CCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCCc--cCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence            999876  322 222  678888888888887777777777778888888777777776667777777777777777764


Q ss_pred             cCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCC--ccChhhhh
Q psy5670         406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT--EINNLSLN  483 (1269)
Q Consensus       406 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~--~~~~~~~~  483 (1269)
                      +. ..+..+++|+.|++++|.++.+.+..|....-                 ....+.|+.|++++|.+.  ++.+..|.
T Consensus       256 lp-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-----------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          256 VP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-----------------GVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             CC-TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-----------------CSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             cC-hhhhcCccCCEEECCCCCCCccChhHcccccc-----------------ccccccccceEeecCcccccccCccccc
Confidence            43 34566666666666666666665554433210                 001345666666666665  45556666


Q ss_pred             ccccCCeeeccCCc
Q psy5670         484 SLHQLAGLRLTENN  497 (1269)
Q Consensus       484 ~l~~L~~L~Ls~n~  497 (1269)
                      .+++|+.+++++|+
T Consensus       318 ~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          318 CVTDRLAIQFGNYK  331 (332)
T ss_dssp             TBCCSTTEEC----
T ss_pred             ccchhhhhhccccc
Confidence            66677777766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.5e-27  Score=272.74  Aligned_cols=297  Identities=23%  Similarity=0.329  Sum_probs=225.0

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      ..+|+.++++++.+..+|...   .++|++|+|++|+++++++..|..      +++|++|++++|.++.+.+..|.+++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKN------LKNLHTLILINNKISKISPGAFAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             cCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhcc------CCCCCEEECCCCcCCeeCHHHhcCCC
Confidence            347999999999999999754   378999999999999987766654      68999999999999999888899999


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccc--cCcccccCCCCCCEEE
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV--LAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~  323 (1269)
                      +|++|++++|.++.++...+   ++|++|++++|.++.+++..|..+++|++|++++|.+..  ..+..|.++++|+.|+
T Consensus       101 ~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          101 KLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             TCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            99999999999998765433   799999999999999999999999999999999999864  6677889999999999


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL  403 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  403 (1269)
                      +++|.+..  ++.. +  .++|+.|++++|.++++.+..|..+++|++|++++|.++.+++..|..+++|+.|++++|++
T Consensus       178 l~~n~l~~--l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          178 IADTNITT--IPQG-L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CCSSCCCS--CCSS-C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CCCCcccc--CCcc-c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            99999876  3222 2  26788888888888777777777777788888877777777666677777777777777777


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc--cChhh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE--INNLS  481 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~--~~~~~  481 (1269)
                      +.+. ..+..+++|++|++++|.++++.+..|....                 .....+.|+.|++++|.+..  +.+..
T Consensus       253 ~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~  314 (330)
T 1xku_A          253 VKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPG-----------------YNTKKASYSGVSLFSNPVQYWEIQPST  314 (330)
T ss_dssp             SSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             ccCC-hhhccCCCcCEEECCCCcCCccChhhcCCcc-----------------cccccccccceEeecCcccccccCccc
Confidence            6443 3456666677777776666666555543220                 00112455666666665543  44556


Q ss_pred             hhccccCCeeeccCCc
Q psy5670         482 LNSLHQLAGLRLTENN  497 (1269)
Q Consensus       482 ~~~l~~L~~L~Ls~n~  497 (1269)
                      |..+..++.++|++|+
T Consensus       315 f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          315 FRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GTTCCCGGGEEC----
T ss_pred             cccccceeEEEecccC
Confidence            6666666666666653

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.95  E-value=1.4e-29  Score=254.01  Aligned_cols=137  Identities=27%  Similarity=0.440  Sum_probs=122.7

Q ss_pred             ccCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHH-hcceEEEEecccchhhhh
Q psy5670        1078 MDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVE-SSRRTIMVLSENFIKSEW 1156 (1269)
Q Consensus      1078 ~~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~-~Sr~~i~vlS~~~~~s~w 1156 (1269)
                      .+.+++.|||||||+++|++||. .|.+.||++++||++|+++||+.||+.+.++|.++|+ +||++|+|+|++|++|.|
T Consensus        10 ~~~~~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           10 LGHMPERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             TSCCTTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCCcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            44557899999999999999997 6999999866799999999999999999999999998 799999999999999999


Q ss_pred             hHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcC----CcchHHHHHHhCCCC
Q psy5670        1157 CRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWG----DKLFWEKLKFALPDV 1220 (1269)
Q Consensus      1157 ~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~----~~~Fw~~l~~~l~~~ 1220 (1269)
                      |.+|++.|+++.++++ .+||||+++++++ .+|.    +++..+|++|.    +++||++||+|||.+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~~-~lp~----ll~~~~~~~~~~~~~~~~FW~kL~~al~~~  152 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMKK-EFPS----ILRFITVCDYTNPCTKSWFWTRLAKALSLP  152 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCCC-CCCT----TTSCSSCEETTCTTTCSSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccch-hhHH----HHhceEEEECCCCCCChHHHHHHHHHcCCc
Confidence            9999999999887766 7999999999963 4454    56778999994    469999999999954

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=273.87  Aligned_cols=165  Identities=21%  Similarity=0.347  Sum_probs=149.6

Q ss_pred             CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecc
Q psy5670         805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ  883 (1269)
Q Consensus       805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~  883 (1269)
                      +++|++++|.+..+.+..|.++++|++|++++|.++. +.+..|..+++|+.|+|++|+++.+.+..|.++++|++|+|+
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            4678888888888777888899999999999999987 678899999999999999999999999999999999999999


Q ss_pred             cccCcccChhhhhcCcccceEeccCccceeeecc-c-cc-CCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcc
Q psy5670         884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LS-SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQI  960 (1269)
Q Consensus       884 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~-~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~  960 (1269)
                      +|+|+.+++..|..+++|++|+|++|+++++.+. + .. ++|+.|++++|||.|+|+. .||.+|++.....+.+...+
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~-~~~~~~l~~~~~~~~~~~~~  286 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERM  286 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG-HHHHHHHHHTGGGBSCGGGC
T ss_pred             CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh-HHHHHHHHhhhhhhcccccc
Confidence            9999999999999999999999999999998887 5 44 5999999999999999996 79999999876666677889


Q ss_pred             eeccCCccce
Q psy5670         961 RCMTGSEVGF  970 (1269)
Q Consensus       961 ~C~~p~~~~~  970 (1269)
                      +|..|+..+|
T Consensus       287 ~C~~p~~~~g  296 (306)
T 2z66_A          287 ECATPSDKQG  296 (306)
T ss_dssp             BEEESGGGTT
T ss_pred             ccCCchhhCC
Confidence            9999998865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.95  E-value=7.6e-28  Score=260.04  Aligned_cols=197  Identities=31%  Similarity=0.533  Sum_probs=182.3

Q ss_pred             CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670         767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT  846 (1269)
Q Consensus       767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~  846 (1269)
                      ..||..|.|.      ...++|++.+++.+ |..+|..+++|++++|.|+.+++..|.++++|+.|+|++|+|+.+.+.+
T Consensus         3 ~~CP~~C~C~------~~~v~c~~~~l~~i-P~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B            3 LHCPAACTCS------NNIVDCRGKGLTEI-PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             CCSCTTSEEE------TTEEECTTSCCSSC-CSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCEEC------CCEEEcCCCCcCcC-CCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence            3699999995      35799999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670         847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ  924 (1269)
Q Consensus       847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~  924 (1269)
                      |.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+++++. | .+++|+
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 7 789999


Q ss_pred             EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670         925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      .|+|++|||.|||++ .|+..|++.....   ...+.|..|...+|..+.
T Consensus       156 ~L~L~~N~~~c~c~l-~~l~~~l~~~~~~---~~~~~C~~P~~l~g~~l~  201 (220)
T 2v9t_B          156 TMHLAQNPFICDCHL-KWLADYLHTNPIE---TSGARCTSPRRLANKRIG  201 (220)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHCCCB---CSCCBEEESGGGTTCBGG
T ss_pred             EEEeCCCCcCCCCcc-HHHHHHHHhCCCC---ccCCCcCCchHHcCCchh
Confidence            999999999999996 7999999875432   356899999988774443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=280.07  Aligned_cols=135  Identities=17%  Similarity=0.274  Sum_probs=88.6

Q ss_pred             EEEccCcCccccccccccCCCCCCEEeCCCCCCcccCccccc---CCcccCeeecccccCcc-----cChhhhhcCcccc
Q psy5670         831 ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE---RLENLRELYLQYNKIIY-----ISNRTFLSLTHLK  902 (1269)
Q Consensus       831 ~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~---~l~~L~~L~L~~N~l~~-----i~~~~f~~l~~L~  902 (1269)
                      .|++++|+++.++...+..+++|+.|+|++|+++.++...+.   ....++.++|++|+++.     + +..|..+++|+
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~  280 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLL  280 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCC
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh-HHHHhcccCCC
Confidence            333333333333333333344444444444444443332221   23455566666665554     4 34678899999


Q ss_pred             eEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670         903 VLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV  968 (1269)
Q Consensus       903 ~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~  968 (1269)
                      .|+|++|+|+.++.. | .+++|+.|++++|||.|+|+...|+..|++.....+  ...+.|..|...
T Consensus       281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~p~~~  346 (353)
T 2z80_A          281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGKP  346 (353)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE--ESCCBBTTTCCB
T ss_pred             EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC--CCCcccCCCCCc
Confidence            999999999999888 6 789999999999999999986689999998876555  457899987643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=5.8e-27  Score=264.54  Aligned_cols=218  Identities=21%  Similarity=0.266  Sum_probs=191.5

Q ss_pred             ccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCC
Q psy5670         600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK  679 (1269)
Q Consensus       600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~  679 (1269)
                      +..+++++++++++|+++.++. .++++++.|+|++|+++++.+..|..+++|+.|+|++|+|+.++...       .. 
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~l-   76 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TL-   76 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-------CC-
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC-------CC-
Confidence            3456688999999999988764 46789999999999999999999999999999999999887643210       00 


Q ss_pred             CCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCccccccccc
Q psy5670         680 NIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCD  759 (1269)
Q Consensus       680 ~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  759 (1269)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (290)
T 1p9a_G           77 --------------------------------------------------------------------------------   76 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCc
Q psy5670         760 FDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV  839 (1269)
Q Consensus       760 ~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i  839 (1269)
                                                                 ..++.|++++|.|+.++. .|.++++|+.|++++|+|
T Consensus        77 -------------------------------------------~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           77 -------------------------------------------PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             -------------------------------------------TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCC
T ss_pred             -------------------------------------------CcCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcC
Confidence                                                       124678888888887774 677889999999999999


Q ss_pred             cccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c
Q psy5670         840 ETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H  918 (1269)
Q Consensus       840 ~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~  918 (1269)
                      +.+++.+|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++.. +
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~  192 (290)
T 1p9a_G          113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (290)
T ss_dssp             CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 6


Q ss_pred             ccCCccEEEeeCCcccccCCcHHHHHHHHHhcc
Q psy5670         919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR  951 (1269)
Q Consensus       919 ~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~  951 (1269)
                      ...+|+.++|++|||.|+|+. .||.+|++.+.
T Consensus       193 ~~~~L~~l~L~~Np~~C~c~~-~~l~~wl~~~~  224 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCNCEI-LYFRRWLQDNA  224 (290)
T ss_dssp             TTCCCSEEECCSCCBCCSGGG-HHHHHHHHHTG
T ss_pred             ccccCCeEEeCCCCccCcCcc-HHHHHHHHhCc
Confidence            778999999999999999996 69999998754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=2.8e-29  Score=305.05  Aligned_cols=352  Identities=20%  Similarity=0.233  Sum_probs=238.0

Q ss_pred             CcccEEEcCCCCCCccCccc-CCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCc-ccccCCC-
Q psy5670         221 INLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPP-ELFNQSR-  293 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~-  293 (1269)
                      ++|++|+|++|.++...... +..+++|++|++++|.++...    +..+..+++|++|++++|.+..... .++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46777777777776544322 566777777787777776432    3456677788888888777654322 2223344 


Q ss_pred             ---CCcEEEeeCCcccc----cCcccccCCCCCCEEECcCCCCCccccC---cccccCCCCccEEEcCCCCCcccC----
Q psy5670         294 ---DLKEVYLQNNSINV----LAPGIFNVLTQLIVLDLSNNELTEEWVN---AATFSGLHRLVVLNIAYNKMNKLD----  359 (1269)
Q Consensus       294 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~----  359 (1269)
                         +|++|++++|.++.    ..+..+..+++|++|++++|.+......   .......++|++|++++|.++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888887774    2355677788888888888877642110   011223557888888888777644    


Q ss_pred             chhhcCCCCCcEEEccCCccccccccccc-----CCCCCcEEEccCCcccccC----cccccCCCCCCEEEccCCCCCcc
Q psy5670         360 SSIFKDLYRLQVLHLENNQIESIHRNTFA-----SLSNLHTLIMSNNKLKRIE----SNSLDSLTALSVLSLDNNELEYI  430 (1269)
Q Consensus       360 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-----~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~  430 (1269)
                      +..+..+++|++|++++|.++......+.     ..++|+.|++++|.+++..    +..+..+++|++|++++|.+...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            34455678888888888887654433332     3568888888888877642    44566778888888888877654


Q ss_pred             C-----hhhhcCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCccChhhhhcc-----ccCCeeeccC
Q psy5670         431 E-----ENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINNLSLNSL-----HQLAGLRLTE  495 (1269)
Q Consensus       431 ~-----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~  495 (1269)
                      .     +..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+++.....+...     ++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            3     2333457888888888888886     67777778888888888888876555444432     5888888888


Q ss_pred             CcCCCCC----hhhhcCCCCCCEEEcCCCccccccccccCC-----CCCccEEEccccccc-----ccCCcCCCCCCCcE
Q psy5670         496 NNISNIS----KGVFEKLSVLTILNLASNKIQKVEAGTFDN-----NSNLVAIRLDGNYLT-----DIGGLFPKLPNLVW  561 (1269)
Q Consensus       496 n~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~-----~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~  561 (1269)
                      |.++...    ...+..+++|++|++++|++++.....+..     .++|+.|++++|.++     .++..+..+++|++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            8886543    234566788888888888887654433321     568888888888887     45666666778888


Q ss_pred             EEccCCcCccc
Q psy5670         562 LNISENLLEWF  572 (1269)
Q Consensus       562 L~Ls~n~l~~~  572 (1269)
                      |++++|+++..
T Consensus       403 L~l~~N~i~~~  413 (461)
T 1z7x_W          403 LDLSNNCLGDA  413 (461)
T ss_dssp             EECCSSSCCHH
T ss_pred             EECCCCCCCHH
Confidence            88888877644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.2e-27  Score=283.65  Aligned_cols=264  Identities=25%  Similarity=0.340  Sum_probs=184.5

Q ss_pred             hccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCC
Q psy5670          25 SKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLS  104 (1269)
Q Consensus        25 ~~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~  104 (1269)
                      ..+....||..|.|...                 ...+.|.+..++.+|.      ..+.++++|+|++|.    ...++
T Consensus        39 ~~~~~~~Cp~~C~C~~~-----------------~~~v~c~~~~l~~iP~------~~~~~l~~L~L~~n~----i~~~~   91 (452)
T 3zyi_A           39 ASAGPQNCPSVCSCSNQ-----------------FSKVVCTRRGLSEVPQ------GIPSNTRYLNLMENN----IQMIQ   91 (452)
T ss_dssp             -----CCCCTTSEECSS-----------------SCEEECCSSCCSSCCS------CCCTTCSEEECCSSC----CCEEC
T ss_pred             ccCCcCCCCCCCEECCC-----------------CcEEEECCCCcCccCC------CCCCCccEEECcCCc----CceEC
Confidence            34556889999999631                 1268898888888872      235678888888888    55677


Q ss_pred             chhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCc
Q psy5670         105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPD  184 (1269)
Q Consensus       105 ~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~  184 (1269)
                      +.+|.++++|++|+|++|.++.+++.+|.++++|++|+|++|...      .+.+..| .++++|++|+|++|.+..++.
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~-~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT------VIPSGAF-EYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------BCCTTTS-SSCTTCCEEECCSCCCCEECT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC------ccChhhh-cccCCCCEEECCCCCcceeCH
Confidence            778888888888888888888887778888888888888655432      3445556 777888888888888777777


Q ss_pred             ccCCCCCCCcEEECCC-CCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchh
Q psy5670         185 AIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH  263 (1269)
Q Consensus       185 ~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  263 (1269)
                      ..|..+++|++|++++ +.+..++...|..      +++|++|+|++|.++.++  .+..+++|++|++++|.++++.+.
T Consensus       165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~------l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          165 YAFNRVPSLMRLDLGELKKLEYISEGAFEG------LFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPG  236 (452)
T ss_dssp             TTTTTCTTCCEEECCCCTTCCEECTTTTTT------CTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGG
T ss_pred             hHHhcCCcccEEeCCCCCCccccChhhccC------CCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcc
Confidence            7777778888888777 3444444434433      566777777777777664  266677777777777777777666


Q ss_pred             hhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCC
Q psy5670         264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT  330 (1269)
Q Consensus       264 ~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  330 (1269)
                      .|.++++|+.|++++|+++.+++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.+.
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            6777777777777777776666666666667777777777666666666666666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.4e-27  Score=281.27  Aligned_cols=263  Identities=25%  Similarity=0.351  Sum_probs=188.9

Q ss_pred             ccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCc
Q psy5670          26 KALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSP  105 (1269)
Q Consensus        26 ~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~  105 (1269)
                      .+....||..|.|...                 ...+.|....+..+|.      ..+..++.|+|++|.    ...+++
T Consensus        29 ~~~~~~Cp~~C~C~~~-----------------~~~v~c~~~~l~~iP~------~~~~~l~~L~L~~n~----i~~~~~   81 (440)
T 3zyj_A           29 TGSAQTCPSVCSCSNQ-----------------FSKVICVRKNLREVPD------GISTNTRLLNLHENQ----IQIIKV   81 (440)
T ss_dssp             ----CCCCSSSEECTT-----------------SCEEECCSCCCSSCCS------CCCTTCSEEECCSCC----CCEECT
T ss_pred             CcccccCCCCCEeCCC-----------------CCEEEeCCCCcCcCCC------CCCCCCcEEEccCCc----CCeeCH
Confidence            3445789999999731                 1268898888988872      235778888888888    566777


Q ss_pred             hhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcc
Q psy5670         106 GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA  185 (1269)
Q Consensus       106 ~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~  185 (1269)
                      .+|.++++|++|+|++|.++.+++++|.++++|++|+|++|+..      .+.+..| .++++|++|+|++|.+..++..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~  154 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT------TIPNGAF-VYLSKLKELWLRNNPIESIPSY  154 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS------SCCTTTS-CSCSSCCEEECCSCCCCEECTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC------eeCHhHh-hccccCceeeCCCCcccccCHH
Confidence            78888888888888888888888778888888888888755432      3445566 7778888888888888877777


Q ss_pred             cCCCCCCCcEEECCCC-CCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhh
Q psy5670         186 IFCPLQSLSYLNLTQN-KLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHA  264 (1269)
Q Consensus       186 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  264 (1269)
                      .|..+++|++|+|++| .+..++...|..      +++|++|+|++|.++.++.  +..+++|++|++++|.++.+.+..
T Consensus       155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRLSYISEGAFEG------LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTTTTT------CSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTT
T ss_pred             HhhhCcccCEeCCCCCCCcceeCcchhhc------ccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhh
Confidence            7778888888888774 444444444433      5677777777777776653  667777777777777777776777


Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCC
Q psy5670         265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT  330 (1269)
Q Consensus       265 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  330 (1269)
                      |.++++|+.|++++|+++.+++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.+.
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777777777777777777776666777777777777777777766666666777777777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=8.6e-29  Score=300.80  Aligned_cols=380  Identities=19%  Similarity=0.194  Sum_probs=209.6

Q ss_pred             CCCcEEEeeCCcccccCcc-cccCCCCCCEEECcCCCCCccc--cCcccccCCCCccEEEcCCCCCcccCchh-hcCCC-
Q psy5670         293 RDLKEVYLQNNSINVLAPG-IFNVLTQLIVLDLSNNELTEEW--VNAATFSGLHRLVVLNIAYNKMNKLDSSI-FKDLY-  367 (1269)
Q Consensus       293 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~-  367 (1269)
                      ++|++|++++|.++..... .+..+++|++|++++|.+....  ..+..+..+++|++|++++|.+.+..... +..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5677888888877665433 3667778888888888776421  01234566677777777777766543322 22333 


Q ss_pred             ---CCcEEEccCCcccccc----cccccCCCCCcEEEccCCcccccCcccc-----cCCCCCCEEEccCCCCCccC----
Q psy5670         368 ---RLQVLHLENNQIESIH----RNTFASLSNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNELEYIE----  431 (1269)
Q Consensus       368 ---~L~~L~Ls~n~l~~i~----~~~f~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~----  431 (1269)
                         +|++|++++|.++...    +..+..+++|++|++++|.+++.....+     ...++|++|++++|.+....    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               5777777777666322    3445666666666666666654332221     12345566666665555433    


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCch-----hhh-cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhh
Q psy5670         432 ENALKNSTSLQDFHLNGNKLTEIP-----KVL-RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV  505 (1269)
Q Consensus       432 ~~~~~~l~~L~~L~Ls~n~l~~lp-----~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~  505 (1269)
                      +..+..+++|++|++++|.++...     ..+ ...++|++|++++|.+++.....                   + ...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-------------------l-~~~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-------------------L-CGI  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH-------------------H-HHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH-------------------H-HHH
Confidence            233344455555555555544211     111 12334555555555544421000                   1 122


Q ss_pred             hcCCCCCCEEEcCCCcccccc-----ccccCCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCcccccc
Q psy5670         506 FEKLSVLTILNLASNKIQKVE-----AGTFDNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEWFDYA  575 (1269)
Q Consensus       506 f~~l~~L~~L~Ls~n~i~~~~-----~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~  575 (1269)
                      +..+++|++|++++|++.+..     +..+..+++|+.|++++|.++.     ++..+..+++|+.|++++|.++..+..
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            334445555555555444321     1112234455555555555543     333444455555555555555432211


Q ss_pred             c-------cCCCccEEECCCCCcccccc---cccccccccccEEEcCCCccccccCCcc-------cCCccEEEccCccc
Q psy5670         576 L-------IPADLQWLDIHGNQISELGN---YFEIESQLRLTYFDASSNKLTELTGNAI-------PHSVENLFLTNNLI  638 (1269)
Q Consensus       576 ~-------lp~~L~~L~Ls~n~l~~~~~---~~~l~~~~~L~~LdLs~N~l~~~~~~~~-------~~~L~~L~Ls~N~i  638 (1269)
                      .       -+++|+.|++++|.++..+.   ...+..+++|++|++++|++++.....+       .++|++|+|++|++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            1       11366667777776664321   1123456788888888888876543322       24899999999999


Q ss_pred             cc----ccCCccCCCCCccEEEcCCCCcccccccccccccCC-CCCCCCceEecCCcccc
Q psy5670         639 SK----VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLP-SHKNIPDFYIGENPFQC  693 (1269)
Q Consensus       639 ~~----~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~-~~~~l~~l~l~~Np~~c  693 (1269)
                      ++    ..+..+..+++|+.|++++|+|+......+.. .++ ...+++.+.+.++.+..
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~-~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-SVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH-HHTSTTCCCCEEECTTCCCCH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH-HhccCCcchhheeecccccCH
Confidence            86    55667788899999999999998764433321 112 23467778877776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.1e-26  Score=257.11  Aligned_cols=259  Identities=24%  Similarity=0.361  Sum_probs=203.5

Q ss_pred             cEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEe
Q psy5670         607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYI  686 (1269)
Q Consensus       607 ~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l  686 (1269)
                      +.++.+++.++.++. .++++|++|+|++|+++++.+..|..+++|+.|+|++|+++.+.+..+     ..+.+|+++++
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEEC
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-----CCccCCCEEeC
Confidence            456666666666543 455667777777777777766667777777777777777776655443     23455666666


Q ss_pred             cCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCccc
Q psy5670         687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCE  766 (1269)
Q Consensus       687 ~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (1269)
                      ++|+..-+                      +                     ...                         
T Consensus        88 ~~n~~l~~----------------------~---------------------~~~-------------------------   99 (285)
T 1ozn_A           88 SDNAQLRS----------------------V---------------------DPA-------------------------   99 (285)
T ss_dssp             CSCTTCCC----------------------C---------------------CTT-------------------------
T ss_pred             CCCCCccc----------------------c---------------------CHH-------------------------
Confidence            65541000                      0                     000                         


Q ss_pred             CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670         767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT  846 (1269)
Q Consensus       767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~  846 (1269)
                                               .+..+      ..+++|++++|.++.+++..|.++++|++|++++|+++.+.+..
T Consensus       100 -------------------------~~~~l------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A          100 -------------------------TFHGL------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             -------------------------TTTTC------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -------------------------HhcCC------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence                                     00000      24588999999999999899999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670         847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ  924 (1269)
Q Consensus       847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~  924 (1269)
                      |..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+.+..|..+++|+.|+|++|+++.+++. + .+++|+
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987 6 789999


Q ss_pred             EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670         925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      .|++++|||.|+|+. .|+..|++....   ....+.|..|+..+|..++
T Consensus       229 ~L~l~~N~~~c~~~~-~~~~~~l~~~~~---~~~~~~c~~p~~l~g~~l~  274 (285)
T 1ozn_A          229 YLRLNDNPWVCDCRA-RPLWAWLQKFRG---SSSEVPCSLPQRLAGRDLK  274 (285)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHCCS---EECCCBEEESGGGTTCBGG
T ss_pred             EEeccCCCccCCCCc-HHHHHHHHhccc---ccCccccCCchHhCCcChh
Confidence            999999999999996 689999987542   3457899999988664433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=250.19  Aligned_cols=197  Identities=25%  Similarity=0.505  Sum_probs=179.0

Q ss_pred             CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcC-CCcCCCCCCccEEEccCcCccccccc
Q psy5670         767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVG-SHSFIGRKKLQILFLNSSHVETIHNK  845 (1269)
Q Consensus       767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~-~~~f~~~~~L~~L~l~~n~i~~i~~~  845 (1269)
                      ..||..|.|..      ..++|++.+++.+ |..+|..+++|++++|.|+.++ ...|.++++|+.|+|++|+|+.+++.
T Consensus         3 ~~CP~~C~C~~------~~l~~s~n~l~~i-P~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A            3 LACPEKCRCEG------TTVDCSNQKLNKI-PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             -CCCTTCEEET------TEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCEECC------CEeEeCCCCcccC-ccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence            46999999953      4799999999998 9999999999999999999995 46799999999999999999999999


Q ss_pred             cccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCc
Q psy5670         846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQI  923 (1269)
Q Consensus       846 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l  923 (1269)
                      +|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+++++. | .+++|
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887 7 78999


Q ss_pred             cEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670         924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       924 ~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      +.|++++|||.|+|++ .|+..|++.....   .....|..|...++..+.
T Consensus       156 ~~L~L~~N~l~c~c~l-~~l~~~~~~~~~~---~~~~~C~~P~~l~g~~l~  202 (220)
T 2v70_A          156 STLNLLANPFNCNCYL-AWLGEWLRKKRIV---TGNPRCQKPYFLKEIPIQ  202 (220)
T ss_dssp             CEEECCSCCEECSGGG-HHHHHHHHHSCCB---CCCCEEEESGGGTTEEGG
T ss_pred             CEEEecCcCCcCCCch-HHHHHHHHhcCcc---ccCCccCCChHHCCCChh
Confidence            9999999999999996 7999999865332   356799999988764443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=9.6e-26  Score=252.42  Aligned_cols=232  Identities=24%  Similarity=0.404  Sum_probs=201.9

Q ss_pred             cccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCce
Q psy5670         605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDF  684 (1269)
Q Consensus       605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l  684 (1269)
                      ..+.+++++++++.++. .++.+++.|+|++|+++++.+..|.++++|+.|+|++|+|+.++...+.             
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~-------------   82 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK-------------   82 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS-------------
T ss_pred             CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc-------------
Confidence            46788999999988664 5678899999999999999888999999999999999988765432110             


Q ss_pred             EecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCc
Q psy5670         685 YIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACD  764 (1269)
Q Consensus       685 ~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (1269)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (270)
T 2o6q_A           83 --------------------------------------------------------------------------------   82 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccc
Q psy5670         765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN  844 (1269)
Q Consensus       765 ~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~  844 (1269)
                                                 ++         ..+++|++++|.++.++...|.++++|+.|++++|+++.+.+
T Consensus        83 ---------------------------~l---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  126 (270)
T 2o6q_A           83 ---------------------------EL---------KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP  126 (270)
T ss_dssp             ---------------------------SC---------TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ---------------------------CC---------CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence                                       00         124778888899999998899999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCC
Q psy5670         845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQ  922 (1269)
Q Consensus       845 ~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~  922 (1269)
                      ..|..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. + .+++
T Consensus       127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 6 7899


Q ss_pred             ccEEEeeCCcccccCCcHHHHHHHHHhccC-CcCccCcceeccCC
Q psy5670         923 IQSITLTSNPWSCDCDFTEKFRDYLQRSRS-SVHDISQIRCMTGS  966 (1269)
Q Consensus       923 l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~-~i~~~~~~~C~~p~  966 (1269)
                      |+.|++++|||.|+|+...|+..|++.... .+.+.+...|..+.
T Consensus       207 L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~  251 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGG  251 (270)
T ss_dssp             CCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSSC
T ss_pred             CCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCCC
Confidence            999999999999999855799999987643 35566778997644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=6.1e-26  Score=259.67  Aligned_cols=289  Identities=20%  Similarity=0.200  Sum_probs=190.0

Q ss_pred             hhHHHHHHHhhhhhhhccccCCCCCCCc--ccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCcccccccccee
Q psy5670          10 ITVLISALGLVSASISKALRYQAPDECK--WFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTV   87 (1269)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~cp~~C~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~   87 (1269)
                      ..+++.+...+......+.|....++|.  |.||+|+.                     .             ....+++
T Consensus         8 ~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~---------------------~-------------~~~~~l~   53 (313)
T 1ogq_A            8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDT---------------------D-------------TQTYRVN   53 (313)
T ss_dssp             HHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECC---------------------S-------------SSCCCEE
T ss_pred             HHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCC---------------------C-------------CCCceEE
Confidence            4556666654433333456766778898  98876642                     0             0135688


Q ss_pred             EEEEEeCCceeecc--CCCchhccCCcccceeEecc-ccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhh
Q psy5670          88 RLRIECGDMLFFQS--SLSPGSFQTLIDLKDLSVEF-CKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD  164 (1269)
Q Consensus        88 ~L~L~~~~~~~~~~--~i~~~~f~~l~~L~~L~L~~-~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~  164 (1269)
                      +|+|+++.+   .+  .++ .+|+++++|++|+|++ |.+....+..|.++++|++|+++++..      ....|..| .
T Consensus        54 ~L~L~~~~l---~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~-~  122 (313)
T 1ogq_A           54 NLDLSGLNL---PKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV------SGAIPDFL-S  122 (313)
T ss_dssp             EEEEECCCC---SSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC------EEECCGGG-G
T ss_pred             EEECCCCCc---cCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee------CCcCCHHH-h
Confidence            999999983   22  344 4899999999999995 777655556788888888888875543      12446667 7


Q ss_pred             cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCC-cccEEEcCCCCCCccCcccCCC
Q psy5670         165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI-NLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ++++|++|++++|.+....+..|..+++|++|++++|++++..+..+..      ++ +|++|++++|.++...+..|..
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS------FSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC------CCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh------hhhcCcEEECcCCeeeccCChHHhC
Confidence            8888888888888877544445677778888888887776544444433      33 6777777777777555556666


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      ++ |+.|++++|.+++..+..|.++++|+.|++++|.++..++. +..+++|++|++++|.+++..|..|..+++|+.|+
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence            65 77777777777766666677777777777777766655444 45566677777776666665566666666666666


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCC
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNK  354 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~  354 (1269)
                      +++|.+++. + +. ...+++|+.+++++|.
T Consensus       275 Ls~N~l~~~-i-p~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          275 VSFNNLCGE-I-PQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCSSEEEEE-C-CC-STTGGGSCGGGTCSSS
T ss_pred             CcCCccccc-C-CC-CccccccChHHhcCCC
Confidence            666666542 1 11 2455555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=7.1e-26  Score=258.83  Aligned_cols=256  Identities=25%  Similarity=0.327  Sum_probs=149.0

Q ss_pred             CCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCC
Q psy5670          32 APDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTL  111 (1269)
Q Consensus        32 cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l  111 (1269)
                      ||+.|.|...                   .+.|....++.+|.      ..+.++++|+|+++.    .+.+++..|+++
T Consensus         1 CP~~C~C~~~-------------------~l~c~~~~l~~ip~------~~~~~l~~L~L~~n~----l~~i~~~~~~~l   51 (306)
T 2z66_A            1 CPSRCSCSGT-------------------EIRCNSKGLTSVPT------GIPSSATRLELESNK----LQSLPHGVFDKL   51 (306)
T ss_dssp             CCTTCEEETT-------------------EEECCSSCCSSCCS------CCCTTCCEEECCSSC----CCCCCTTTTTTC
T ss_pred             CcCCCeeCCC-------------------EEEcCCCCcccCCC------CCCCCCCEEECCCCc----cCccCHhHhhcc
Confidence            9999999742                   57888778887762      224567777777777    446666667777


Q ss_pred             cccceeEeccccCCCCC--hhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCc-ccCC
Q psy5670         112 IDLKDLSVEFCKIGNLS--AGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPD-AIFC  188 (1269)
Q Consensus       112 ~~L~~L~L~~~~i~~i~--~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~-~~~~  188 (1269)
                      ++|++|+|++|.++.+.  +.++.++++|++|+++++..       ...+..| .++++|++|++++|.+..++. ..|.
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-------~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-------ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFL  123 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-------EEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-------ccChhhc-CCCCCCCEEECCCCcccccccchhhh
Confidence            77777777777765442  23445566666666654322       1122334 556666666666666665554 4455


Q ss_pred             CCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCc-cCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670         189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPAEGFSRLSRLQELYLQGNILTFLADHALDG  267 (1269)
Q Consensus       189 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  267 (1269)
                      .+++|++|++++|.+....+..+..      +++|++|++++|.++. ..+..+..+++|++|++++|.++++.+..|.+
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTT------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hccCCCEEECCCCcCCccchhhccc------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            6666666666666555444433322      3456666666665554 23344555555666666655555555555555


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCC-CCCEEECcCCCCC
Q psy5670         268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLT-QLIVLDLSNNELT  330 (1269)
Q Consensus       268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  330 (1269)
                      +++|++|++++|+++.+++..|..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55555555555555555554555555555555555555555555555542 5555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=5.8e-25  Score=256.62  Aligned_cols=282  Identities=19%  Similarity=0.270  Sum_probs=189.0

Q ss_pred             cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670         165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL  244 (1269)
Q Consensus       165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  244 (1269)
                      .++.....+++++.++.+|...+   ++|++|++++|+++.++...+..      +++|++|++++|.++.+++..|.++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQR------CVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhcc------CCCCCEEECCCCccCccCHhhcCCC
Confidence            34555567778888888877543   47777788777777666544543      5677777777777777776677777


Q ss_pred             CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCcEEEeeCC-cccccCcccccCCCCCCEE
Q psy5670         245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP-ELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  322 (1269)
                      ++|++|++++|.++.+.+..|.++++|++|++++|+++.++. ..|..+++|++|++++| .+..+.+..|.++++|++|
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            777777777777777776667777777777777777777766 56677777777777776 4666666666666777777


Q ss_pred             ECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCc
Q psy5670         323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK  402 (1269)
Q Consensus       323 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~  402 (1269)
                      ++++|.+.+  ..+..+..+++|++|++++|.+..++...+..+++|+.|++++|.++.++...+..             
T Consensus       180 ~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------  244 (353)
T 2z80_A          180 EIDASDLQS--YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------  244 (353)
T ss_dssp             EEEETTCCE--ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred             ECCCCCcCc--cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence            777666655  33555666666666666666665555544555566666666666655443222111             


Q ss_pred             ccccCcccccCCCCCCEEEccCCCCCcc----ChhhhcCCCCCcEEEccCCCCCCchhh-hcCCCCCcEEECCCCCCCcc
Q psy5670         403 LKRIESNSLDSLTALSVLSLDNNELEYI----EENALKNSTSLQDFHLNGNKLTEIPKV-LRNLHSLKTLDLGDNLITEI  477 (1269)
Q Consensus       403 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~i~~~  477 (1269)
                              ......++.++++++.+.+.    .+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+...
T Consensus       245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                    11234556666666655542    245677888888888888888888876 47888888888888888765


Q ss_pred             C
Q psy5670         478 N  478 (1269)
Q Consensus       478 ~  478 (1269)
                      .
T Consensus       317 ~  317 (353)
T 2z80_A          317 C  317 (353)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2e-24  Score=242.68  Aligned_cols=161  Identities=21%  Similarity=0.365  Sum_probs=141.1

Q ss_pred             CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccc-cccccCCCCCCEEeCCCCCCcccCcccccCCcccC----e
Q psy5670         805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH-NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLR----E  879 (1269)
Q Consensus       805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~-~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~----~  879 (1269)
                      +++|++++|.++.++...|.++++|++|++++|+++.+. +..|.++++|+.|+|++|+++.+++..|..+.+|+    +
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            467888888888888878888999999999999999876 88999999999999999999999998998888888    8


Q ss_pred             eecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCcc
Q psy5670         880 LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI  957 (1269)
Q Consensus       880 L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~  957 (1269)
                      |+|++|+|+.+++..|... +|+.|+|++|+|+.+++. + .+++|+.|++++|||.|+|+...|+..|++.....  ..
T Consensus       182 L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~--~~  258 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQ  258 (276)
T ss_dssp             EECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG--BC
T ss_pred             eecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc--cC
Confidence            9999999999999888654 899999999999999988 6 78999999999999999998778999999876433  34


Q ss_pred             CcceeccCCcc
Q psy5670         958 SQIRCMTGSEV  968 (1269)
Q Consensus       958 ~~~~C~~p~~~  968 (1269)
                      +...|..|...
T Consensus       259 ~~~~C~~~~~~  269 (276)
T 2z62_A          259 GSAKCSGSGKP  269 (276)
T ss_dssp             SCCBBTTTCCB
T ss_pred             CCceeeCCCCc
Confidence            56799887643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=1.2e-24  Score=248.78  Aligned_cols=248  Identities=20%  Similarity=0.256  Sum_probs=131.4

Q ss_pred             CcccEEEcCCCCCCc--cCcccCCCCCCCCEEEccC-CCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy5670         221 INLRVLDLSNNSFDS--LPAEGFSRLSRLQELYLQG-NILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKE  297 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~  297 (1269)
                      .+++.|+|++|.+++  ..+..|.++++|++|++++ |.+.+..+..|.++++|++|++++|.++...+..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356666666666664  3334566666666666663 5555555555555566666666555555333334455555555


Q ss_pred             EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCC-CCcEEEccC
Q psy5670         298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY-RLQVLHLEN  376 (1269)
Q Consensus       298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~  376 (1269)
                      |++++|.+++..+..|..+++|++|++++|.+.+                          ..+..+..++ +|++|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------------~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------------AIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------------ECCGGGGCCCTTCCEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------------cCCHHHhhhhhcCcEEECcC
Confidence            5555555554444444455555555555544432                          2233333333 444444444


Q ss_pred             CcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-Cch
Q psy5670         377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIP  455 (1269)
Q Consensus       377 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp  455 (1269)
                      |.++...+..|..++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.++ .+|
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence            444433333444443 55555555555555455555555555555555555444333 445555666666666555 455


Q ss_pred             hhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCc
Q psy5670         456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN  497 (1269)
Q Consensus       456 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  497 (1269)
                      ..+..+++|++|++++|.+++..+.. ..+++|+.|++++|+
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            55666666666666666666544433 455556666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.1e-23  Score=260.65  Aligned_cols=243  Identities=23%  Similarity=0.284  Sum_probs=147.7

Q ss_pred             CCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670         392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD  471 (1269)
Q Consensus       392 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~  471 (1269)
                      +|+.|++++|.++.+..    .+++|++|+|++|.++.++.    .+++|++|++++|.++.+|.   .+++|+.|++++
T Consensus        62 ~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred             CCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence            44444444444443322    23444444444444444332    34455555555555555544   334555555555


Q ss_pred             CCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCC
Q psy5670         472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGG  551 (1269)
Q Consensus       472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~  551 (1269)
                      |.+++++.    .+++|+.|++++|.++.++.    .+++|+.|++++|++++++    ..+++|+.|++++|.++.+|.
T Consensus       131 N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          131 NQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC
Confidence            55555433    13555566666665555542    2345666666666666554    234566666666666666554


Q ss_pred             cCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEE
Q psy5670         552 LFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL  631 (1269)
Q Consensus       552 ~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L  631 (1269)
                      .   +++|+.|++++|.++.++.  .+++|+.|++++|+|+.++.     .+++|+.|++++|+|++++.  .+++|+.|
T Consensus       199 ~---~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp~-----~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L  266 (622)
T 3g06_A          199 L---PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPM--LPSGLLSL  266 (622)
T ss_dssp             C---CTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred             c---cchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCCC-----CCCcCcEEECCCCCCCcCCc--ccccCcEE
Confidence            3   3566666666666665542  34567777777777776652     34678888888888887766  56789999


Q ss_pred             EccCcccccccCCccCCCCCccEEEcCCCCccccccccc
Q psy5670         632 FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL  670 (1269)
Q Consensus       632 ~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~  670 (1269)
                      +|++|+|+.+ |..|.++++|+.|+|++|.+++..+..+
T Consensus       267 ~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          267 SVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             ECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             eCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            9999999865 5678889999999999999887665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=4.5e-24  Score=241.08  Aligned_cols=205  Identities=28%  Similarity=0.417  Sum_probs=109.5

Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCc-ccccCcccccCCCCCCEEEC
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDL  324 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  324 (1269)
                      +|++|++++|.++.+.+..|.++++|++|++++|.++.+++..|..+++|++|++++|. +..+.+..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444444444444444444444444444444433334444444444444443 44443444444444555555


Q ss_pred             cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670         325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      ++|.+..  +.+..+.++++|++|++++|.+..+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.++
T Consensus       113 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          113 DRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             TTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCE--ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            5444443  22334444555555555555555555555555566666666666666555555666666666666666666


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670         405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT  452 (1269)
Q Consensus       405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (1269)
                      +..+..+..+++|+.|++++|.+.++.+..+..+++|+.|++++|.+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            665556666666666666666666666666666666666666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=2.7e-26  Score=288.28  Aligned_cols=342  Identities=13%  Similarity=0.091  Sum_probs=160.4

Q ss_pred             CCcccEEEcCCCCCCccCc----ccCCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcccccC
Q psy5670         220 GINLRVLDLSNNSFDSLPA----EGFSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPPELFNQ  291 (1269)
Q Consensus       220 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~  291 (1269)
                      +++|++|+|++|.++....    ..+..+++|++|++++|.++++.    +..+.++++|++|++++|.+..++ ..+..
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhh
Confidence            3445555555554433211    12233455555555555544222    122334455555555555544443 33444


Q ss_pred             CCCCcEEEeeCCccc---ccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCc-hhhcCCC
Q psy5670         292 SRDLKEVYLQNNSIN---VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS-SIFKDLY  367 (1269)
Q Consensus       292 l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~  367 (1269)
                      +++|++|.++.....   ......+..+++|+.|+++++....   .+..+..+++|++|++++|.++.... ..+..++
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE---MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT---GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH---HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            555555555432111   1111223445555555555432221   13334445555666665555433222 2234555


Q ss_pred             CCcEEEccCCcccc-cccccccCCCCCcEEEccC-----------CcccccCccc-ccCCCCCCEEEccCCCCCccChhh
Q psy5670         368 RLQVLHLENNQIES-IHRNTFASLSNLHTLIMSN-----------NKLKRIESNS-LDSLTALSVLSLDNNELEYIEENA  434 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~-----------n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~  434 (1269)
                      +|++|+++ +.+.. .....+..+++|++|++++           +.+++..... ...+++|++|+++.+.+++.....
T Consensus       319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            66666665 22221 1111223455566666652           3443322111 234566666666655555544444


Q ss_pred             hcC-CCCCcEEEcc----CCCCCCc------hhhhcCCCCCcEEECCCCC--CCccChhhhh-ccccCCeeeccCCcCCC
Q psy5670         435 LKN-STSLQDFHLN----GNKLTEI------PKVLRNLHSLKTLDLGDNL--ITEINNLSLN-SLHQLAGLRLTENNISN  500 (1269)
Q Consensus       435 ~~~-l~~L~~L~Ls----~n~l~~l------p~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~-~l~~L~~L~Ls~n~l~~  500 (1269)
                      +.. +++|++|+++    .|.++..      +..+..+++|++|+++.|.  +++.....+. .+++|+.|+|++|.++.
T Consensus       398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  477 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD  477 (592)
T ss_dssp             HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred             HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence            443 6666666664    4455542      2234556666666665433  4443333332 35666666666666643


Q ss_pred             CC-hhhhcCCCCCCEEEcCCCcccccccc-ccCCCCCccEEEcccccccccC--CcCCCCCCCcEEEccC
Q psy5670         501 IS-KGVFEKLSVLTILNLASNKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISE  566 (1269)
Q Consensus       501 i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~  566 (1269)
                      .. ...+.++++|++|++++|.+++.... .+..+++|+.|++++|+++..+  .....++.+....+..
T Consensus       478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            21 22345666677777776665433222 2234566666777666665432  1223345554444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=4.5e-23  Score=255.06  Aligned_cols=270  Identities=26%  Similarity=0.304  Sum_probs=208.6

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      ..++++|++++|.++.+|...+   ++|++|+|++|+++.++.          .+++|++|+|++|.++.++.    .++
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~lp~----~l~  101 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTSLPV----LPP  101 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----------CCTTCCEEEECSCCCSCCCC----CCT
T ss_pred             CCCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----------cCCCCCEEEcCCCcCCcCCC----CCC
Confidence            3468999999999999988653   789999999999887654          14789999999999998875    578


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECc
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS  325 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  325 (1269)
                      +|++|++++|.++.++.    .+++|+.|++++|+++.+|..    +++|++|++++|.+++++.    .+++|+.|+++
T Consensus       102 ~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~  169 (622)
T 3g06_A          102 GLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAY  169 (622)
T ss_dssp             TCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECC
Confidence            89999999999888764    568899999999999888753    4889999999998887653    35678888888


Q ss_pred             CCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccc
Q psy5670         326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR  405 (1269)
Q Consensus       326 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~  405 (1269)
                      +|.++.  ++    ..+++|+.|++++|.+++++.    .+++|+.|++++|.++.++.    .+++|+.|++++|++++
T Consensus       170 ~N~l~~--l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~  235 (622)
T 3g06_A          170 NNQLTS--LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS  235 (622)
T ss_dssp             SSCCSC--CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC
T ss_pred             CCCCCC--Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc
Confidence            888876  32    456788888888888887654    24678888888888887663    24678888888888777


Q ss_pred             cCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc
Q psy5670         406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL  485 (1269)
Q Consensus       406 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  485 (1269)
                      +.    ..+++|+.|+|++|.+..++.    .+++|+.|+|++|.++.+|..+..+++|+.|++++|.+++..+..+..+
T Consensus       236 lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          236 LP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            54    345677888888887776654    4567777888887777777777777777777777777777666555544


Q ss_pred             c
Q psy5670         486 H  486 (1269)
Q Consensus       486 ~  486 (1269)
                      +
T Consensus       308 ~  308 (622)
T 3g06_A          308 T  308 (622)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.91  E-value=6.5e-24  Score=223.81  Aligned_cols=170  Identities=32%  Similarity=0.613  Sum_probs=116.5

Q ss_pred             CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670         767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT  846 (1269)
Q Consensus       767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~  846 (1269)
                      ..||..|.|.      ...++|++.+++.+ |..+|.++++|++++|.|+.++                         ..
T Consensus         2 ~~CP~~C~C~------~~~l~~~~~~l~~i-p~~~~~~l~~L~L~~n~i~~ip-------------------------~~   49 (193)
T 2wfh_A            2 SRCPTECTCL------DTVVRCSNKGLKVL-PKGIPRDVTELYLDGNQFTLVP-------------------------KE   49 (193)
T ss_dssp             --CCTTCEEE------TTEEECTTSCCSSC-CSCCCTTCCEEECCSSCCCSCC-------------------------GG
T ss_pred             CCCCCCCEeC------CCEEEcCCCCCCcC-CCCCCCCCCEEECCCCcCchhH-------------------------HH
Confidence            3599999995      34688888888777 7766666666666666655554                         34


Q ss_pred             ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670         847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ  924 (1269)
Q Consensus       847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~  924 (1269)
                      |.++++|+.|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++. | .+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence            55555556666666666666655666666666666666666666666666666666666666666666665 4 566788


Q ss_pred             EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceee
Q psy5670         925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTI  972 (1269)
Q Consensus       925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~  972 (1269)
                      .|++++|||.|||++ .||..|++...   .....+.|+.|+..+|..
T Consensus       130 ~L~L~~N~~~C~c~l-~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~  173 (193)
T 2wfh_A          130 HLAIGANPLYCDCNM-QWLSDWVKSEY---KEPGIARCAGPGEMADKL  173 (193)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHSS---CCCSCCBEEESGGGTTCB
T ss_pred             EEEeCCCCeecCCcC-HHHHHHHHhcc---CCCCCcCcCCchHHCCCC
Confidence            899999999999996 79999998753   234568999999987633

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=2.8e-23  Score=225.86  Aligned_cols=190  Identities=29%  Similarity=0.547  Sum_probs=170.5

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN  848 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~  848 (1269)
                      ....|.|.      ...|+|++.+++.+ |..+|.+++.|+|++|.|+.+.+..|.++++|+.|+|++|+|+.+++..|.
T Consensus        13 ~~~~~~Cs------~~~v~c~~~~l~~i-p~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           13 CPSQCSCS------GTTVDCRSKRHASV-PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CCTTCEEE------TTEEECTTSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCEEe------CCEeEccCCCcCcc-CCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            34567773      34699999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670         849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI  926 (1269)
Q Consensus       849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l  926 (1269)
                      ++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.++.. +..+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            999999999999999999999999999999999999999999754 58899999999999999999988 6 78999999


Q ss_pred             EeeCCcccccCCcHHHHHHHHHhccCCc--------CccCcceeccCC
Q psy5670         927 TLTSNPWSCDCDFTEKFRDYLQRSRSSV--------HDISQIRCMTGS  966 (1269)
Q Consensus       927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i--------~~~~~~~C~~p~  966 (1269)
                      ++++|||.|+|....|++.|++.....+        .+.....|..+.
T Consensus       165 ~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~  212 (229)
T 3e6j_A          165 YLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN  212 (229)
T ss_dssp             ECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred             EeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence            9999999999975589999998754333        455677887763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=3.1e-25  Score=278.62  Aligned_cols=374  Identities=16%  Similarity=0.156  Sum_probs=172.4

Q ss_pred             hcCCCCCEEEccCCCC----ccCCccc-----------CCCCCCCcEEECCCCCCCCCCccccCCCCcccCC-CcccEEE
Q psy5670         164 DELQSLESLDLSMNSI----WTLPDAI-----------FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG-INLRVLD  227 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l----~~l~~~~-----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l-~~L~~L~  227 (1269)
                      ..+++|++|+++++..    ..+|...           +..+++|++|+|++|.+.+.....+...     + .+|++|+
T Consensus        70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----~~~~L~~L~  144 (592)
T 3ogk_B           70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----RADDLETLK  144 (592)
T ss_dssp             HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----HGGGCCEEE
T ss_pred             HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh-----ccccCcEEE
Confidence            7888899999987542    1122111           1145667777776665544322222110     1 2366666


Q ss_pred             cCCCC-CCcc-CcccCCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCc----ccccCCCCCcE
Q psy5670         228 LSNNS-FDSL-PAEGFSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSRDLKE  297 (1269)
Q Consensus       228 Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~~L~~  297 (1269)
                      |++|. ++.. ......++++|++|++++|.+++..    +..+.++++|++|++++|.++.+..    ..+..+++|++
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            66654 1110 0111234566666666666554432    1233455666666666666553322    22344566666


Q ss_pred             EEeeCCcccccCcccccCCCCCCEEECcCCCCCcc-ccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccC
Q psy5670         298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE-WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN  376 (1269)
Q Consensus       298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  376 (1269)
                      |++++|.+.+++ ..+..+++|+.|+++....... ......+..+++|+.|+++++                       
T Consensus       225 L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------  280 (592)
T 3ogk_B          225 VKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-----------------------  280 (592)
T ss_dssp             EECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-----------------------
T ss_pred             EeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-----------------------
Confidence            666666555543 4455566666666653211100 011122334444444444443                       


Q ss_pred             CcccccccccccCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEccCCCCCc-cChhhhcCCCCCcEEEccC------
Q psy5670         377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIES-NSLDSLTALSVLSLDNNELEY-IEENALKNSTSLQDFHLNG------  448 (1269)
Q Consensus       377 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~------  448 (1269)
                       ....++ ..+..+++|++|++++|.+++... ..+..+++|+.|++++ .+.. ..+..+..+++|++|++++      
T Consensus       281 -~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~  357 (592)
T 3ogk_B          281 -GPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQG  357 (592)
T ss_dssp             -CTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred             -chhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence             222222 123334444444444444332221 1234445555555542 2211 1122223455555555552      


Q ss_pred             -----CCCCC--chhhhcCCCCCcEEECCCCCCCccChhhhhc-cccCCeeecc----CCcCCCCCh-----hhhcCCCC
Q psy5670         449 -----NKLTE--IPKVLRNLHSLKTLDLGDNLITEINNLSLNS-LHQLAGLRLT----ENNISNISK-----GVFEKLSV  511 (1269)
Q Consensus       449 -----n~l~~--lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls----~n~l~~i~~-----~~f~~l~~  511 (1269)
                           +.++.  ++.....+++|++|+++.+.+++.....+.. +++|+.|+++    .|.++..+.     ..+.++++
T Consensus       358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~  437 (592)
T 3ogk_B          358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK  437 (592)
T ss_dssp             TSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred             cccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence                 23331  2222344556666666555555544444433 5566666664    344443321     12445666


Q ss_pred             CCEEEcCCCc--ccccccccc-CCCCCccEEEcccccccc--cCCcCCCCCCCcEEEccCCcC
Q psy5670         512 LTILNLASNK--IQKVEAGTF-DNNSNLVAIRLDGNYLTD--IGGLFPKLPNLVWLNISENLL  569 (1269)
Q Consensus       512 L~~L~Ls~n~--i~~~~~~~~-~~~~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l  569 (1269)
                      |+.|++++|.  +++.....+ ..+++|+.|++++|.+++  ++..+.++++|+.|++++|.+
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence            6666665432  333222222 124556666666665543  233344455555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=4.4e-23  Score=228.04  Aligned_cols=144  Identities=27%  Similarity=0.434  Sum_probs=110.5

Q ss_pred             CCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccc
Q psy5670         823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK  902 (1269)
Q Consensus       823 f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  902 (1269)
                      |.++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            34455666677777777777777777777888888888888888877788888888888888888888887788888888


Q ss_pred             eEeccCccceeeecc-c-ccCCccEEEeeCCccccc-CCcHHHHHHHHHhccCCcCc---------cCcceeccCCc
Q psy5670         903 VLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCD-CDFTEKFRDYLQRSRSSVHD---------ISQIRCMTGSE  967 (1269)
Q Consensus       903 ~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~-C~~~~~~~~w~~~~~~~i~~---------~~~~~C~~p~~  967 (1269)
                      +|+|++|+|+.+++. + .+++|+.|++++|||.|+ |+. .|+..|++.....+.+         .....|..+..
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  234 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI-LYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKV  234 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTH-HHHHHHHHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcccc-HHHHHHHHhcccceeeccCcccccCCCcCccCCCcE
Confidence            888888888888776 5 678899999999999999 885 7999999876544432         33467766543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=3e-24  Score=246.26  Aligned_cols=260  Identities=22%  Similarity=0.242  Sum_probs=193.6

Q ss_pred             cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670         222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ  301 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  301 (1269)
                      .++.++++.+.+...+...+..+++|++|++++|.++.+.+..|.++++|++|++++|.++.+++  |..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            46666777777666655556667788888888888888777778888888888888888776654  6778888888888


Q ss_pred             CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670         302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES  381 (1269)
Q Consensus       302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  381 (1269)
                      +|.++++++     .++|+.|++++|.+.+  +.   ...+++|+.|++++|.++.+.+..+..+++|++|++++|.++.
T Consensus        89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~--~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           89 NNYVQELLV-----GPSIETLHAANNNISR--VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             SSEEEEEEE-----CTTCCEEECCSSCCSE--EE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             CCccccccC-----CCCcCEEECCCCccCC--cC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            888776542     3788888888888775  22   2335678888888888888777777778888888888888877


Q ss_pred             cccccc-cCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcC
Q psy5670         382 IHRNTF-ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN  460 (1269)
Q Consensus       382 i~~~~f-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~  460 (1269)
                      +.+..+ ..+++|+.|++++|.++++..  ...+++|++|++++|.+.++.+. +..+++|++|++++|.++.+|..+..
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhc
Confidence            665555 367788888888888877633  33477888888888888877665 77778888888888888888877777


Q ss_pred             CCCCcEEECCCCCCC-ccChhhhhccccCCeeeccCC
Q psy5670         461 LHSLKTLDLGDNLIT-EINNLSLNSLHQLAGLRLTEN  496 (1269)
Q Consensus       461 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n  496 (1269)
                      +++|+.|++++|.+. +..+..+..++.|+.|+++++
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            788888888888877 555556667777777776644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.90  E-value=1.3e-23  Score=245.41  Aligned_cols=196  Identities=28%  Similarity=0.492  Sum_probs=162.3

Q ss_pred             cCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCC-CCCCccEEEccCcCcccccc
Q psy5670         766 EMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI-GRKKLQILFLNSSHVETIHN  844 (1269)
Q Consensus       766 ~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~-~~~~L~~L~l~~n~i~~i~~  844 (1269)
                      ...||..|.|.      ...++|++.+++.+ |..+|..++.|+|++|+|+.++...|. ++++|+.|+|++|+|+.+.+
T Consensus         9 ~~~Cp~~C~C~------~~~l~c~~~~l~~i-P~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            9 VVSCPANCLCA------SNILSCSKQQLPNV-PQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             CTTCCTTCEEE------TTEEECCSSCCSSC-CSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred             CCCCCCCCEEC------CCEEEeCCCCcCcc-CccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence            45799999995      35799999999998 999999999999999999999998887 89999999999999999998


Q ss_pred             ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c----c
Q psy5670         845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H----L  919 (1269)
Q Consensus       845 ~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~----~  919 (1269)
                      .+|.++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.++.. |    .
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            8899999999999999999888888888888888888888888888888888888888888888887777655 3    1


Q ss_pred             cCC--------------------------ccEEEeeCCcccccCCcHHHHHHHHHhccCCcCc-cCcceeccCCcc
Q psy5670         920 SSQ--------------------------IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHD-ISQIRCMTGSEV  968 (1269)
Q Consensus       920 ~~~--------------------------l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~-~~~~~C~~p~~~  968 (1269)
                      +++                          ++.|+|++|||.|||++.+++..|+......+.+ ...+.|..|...
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~  237 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL  237 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCC
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHH
Confidence            222                          3568999999999999755578898765433333 357899998765

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.90  E-value=1.2e-24  Score=214.27  Aligned_cols=132  Identities=22%  Similarity=0.368  Sum_probs=98.1

Q ss_pred             CCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670        1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus      1080 ~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
                      ..++.|||||||+++|++||. +|.+.||++++||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|.||.+
T Consensus         6 r~~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            6 RWSKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TTSSSEEEEEECCGGGHHHHH-HHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            347899999999999999994 7999999744899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCc-chHHHHHHhC
Q psy5670        1160 EFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDK-LFWEKLKFAL 1217 (1269)
Q Consensus      1160 e~~~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~-~Fw~~l~~~l 1217 (1269)
                      |++.|+++++..+.++|||+ ++++..++|+.    |+..+|+++.+. .-+.+++.++
T Consensus        85 El~~al~~~~~~~~~vIpv~-~~v~~~~lp~~----Lr~~~~id~~~~d~~f~~l~~~v  138 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLL-SGLSRAAYPPE----LRFMYYVDGRGPDGGFRQVKEAV  138 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEE-CSCCGGGSCGG----GGGSCCEETTSGGGGHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCcEEEEE-cCCChhhCCHH----HhCeeeeeccChHhhHHHHHHHH
Confidence            99999998876557888655 67887777775    667789999653 5668887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=4.5e-24  Score=244.82  Aligned_cols=258  Identities=20%  Similarity=0.211  Sum_probs=150.2

Q ss_pred             CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670         248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN  327 (1269)
Q Consensus       248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  327 (1269)
                      +.++++.+.+.......+..+++|++|++++|+++.+++..|..+++|++|++++|.+++..+  |..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            333444444444444444455555555555555555555555555555555555555554433  445555555555555


Q ss_pred             CCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC
Q psy5670         328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE  407 (1269)
Q Consensus       328 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~  407 (1269)
                      .+                          ++++     ..++|++|++++|.++.++..   .+++|+.|++++|+++++.
T Consensus        91 ~l--------------------------~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           91 YV--------------------------QELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             EE--------------------------EEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG
T ss_pred             cc--------------------------cccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc
Confidence            44                          3322     124555555555555554432   2345666666666666655


Q ss_pred             cccccCCCCCCEEEccCCCCCccChhhh-cCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670         408 SNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH  486 (1269)
Q Consensus       408 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  486 (1269)
                      +..+..+++|+.|++++|.+.++.+..+ ..+++|++|++++|.++.++.. ..+++|++|++++|.++++++. +..++
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~  214 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA  214 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC
Confidence            5556666666666666666666555444 3566677777777776666432 2366777777777777766554 66677


Q ss_pred             cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccc-cccccccCCCCCccEEEcccc
Q psy5670         487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGN  544 (1269)
Q Consensus       487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~L~~L~L~~n  544 (1269)
                      +|+.|++++|.++.++.. +..+++|+.|++++|++. +..+..+..+++|+.|+++++
T Consensus       215 ~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          215 GVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            777777777777666643 566777777777777776 444555566666666666633

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.9e-22  Score=214.65  Aligned_cols=180  Identities=28%  Similarity=0.526  Sum_probs=167.9

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN  848 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~  848 (1269)
                      ||..|.|.      ...++|++.+++.+ |..++..+++|++++|+++.+++..|.++++|++|++++|+++.+++..|.
T Consensus         1 Cp~~C~C~------~~~v~c~~~~l~~~-p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   73 (208)
T 2o6s_A            1 CPSRCSCS------GTTVECYSQGRTSV-PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN   73 (208)
T ss_dssp             CCTTCEEE------TTEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEEC------CCEEEecCCCccCC-CCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC
Confidence            89999994      35789999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670         849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI  926 (1269)
Q Consensus       849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l  926 (1269)
                      ++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+++. + .+++|+.|
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 6 78999999


Q ss_pred             EeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670         927 TLTSNPWSCDCDFTEKFRDYLQRSRSSVH  955 (1269)
Q Consensus       927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i~  955 (1269)
                      ++++|||.|+|+...++..|...-...++
T Consensus       154 ~l~~N~~~~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          154 WLHDNPWDCTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ECCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred             EecCCCeecCCCCHHHHHHHHHhCCceee
Confidence            99999999999977888888876544443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.2e-22  Score=219.42  Aligned_cols=212  Identities=22%  Similarity=0.363  Sum_probs=124.7

Q ss_pred             CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670          30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ  109 (1269)
Q Consensus        30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~  109 (1269)
                      +.||..|.|..                .+.+.+.|..  ++.+|      . .+..+++|++++|.    ...+++.+|+
T Consensus         2 ~~cp~~C~C~~----------------~~~~~v~c~~--l~~ip------~-~~~~l~~L~l~~n~----l~~i~~~~~~   52 (239)
T 2xwt_C            2 GCSSPPCECHQ----------------EEDFRVTCKD--IQRIP------S-LPPSTQTLKLIETH----LRTIPSHAFS   52 (239)
T ss_dssp             -CCSSSCSEEE----------------CSTTEEEECS--CSSCC------C-CCTTCCEEEEESCC----CSEECTTTTT
T ss_pred             CCCCCCCeeCC----------------CCcceeEccC--ccccC------C-CCCcccEEEEeCCc----ceEECHHHcc
Confidence            57999999974                1234678854  66666      2 35678888888888    5667777888


Q ss_pred             CCcccceeEecccc-CCCCChhhccCCccCceeeccc-ccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccC
Q psy5670         110 TLIDLKDLSVEFCK-IGNLSAGSFRGLRKLKTLTLRT-HNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF  187 (1269)
Q Consensus       110 ~l~~L~~L~L~~~~-i~~i~~~~f~~l~~L~~L~L~~-~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~  187 (1269)
                      ++++|++|++++|+ ++.+++.+|.++++|++|++++ +..      ..+.+..| .++++|++|++++|.++.+|.  |
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l------~~i~~~~f-~~l~~L~~L~l~~n~l~~lp~--~  123 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL------TYIDPDAL-KELPLLKFLGIFNTGLKMFPD--L  123 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC------CEECTTSE-ECCTTCCEEEEEEECCCSCCC--C
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe------eEcCHHHh-CCCCCCCEEeCCCCCCccccc--c
Confidence            88888888888886 7777777777777777777754 322      13444455 666666666666666666654  4


Q ss_pred             CCCCCCc---EEECCCC-CCCCCCccccCCCCcccCCCccc-EEEcCCCCCCccCcccCCCCCCCCEEEccCCC-Ccccc
Q psy5670         188 CPLQSLS---YLNLTQN-KLSNVATFSFSNYDTARCGINLR-VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNI-LTFLA  261 (1269)
Q Consensus       188 ~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  261 (1269)
                      ..+++|+   +|++++| ++..+++..|..      +++|+ .|++++|.++.++...|.. ++|++|++++|. ++.++
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMTSIPVNAFQG------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCCEECTTTTTT------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC
T ss_pred             ccccccccccEEECCCCcchhhcCcccccc------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC
Confidence            5555555   5555555 444444333322      34444 5555555544444443333 444444444442 44444


Q ss_pred             hhhhcCC-CCCcEEEccCCCCCCCCc
Q psy5670         262 DHALDGL-NSLTVLNLSVNNLVNIPP  286 (1269)
Q Consensus       262 ~~~~~~l-~~L~~L~Ls~n~l~~l~~  286 (1269)
                      +..|.++ ++|+.|++++|+++.+|+
T Consensus       197 ~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          197 KDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             TTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             HHHhhccccCCcEEECCCCccccCCh
Confidence            4444444 444444444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=3.6e-24  Score=268.98  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=82.9

Q ss_pred             CCCCCEEEccCCCCCccChhhhc-CCCCCcEEEcc--C----CCCCCch------hhhcCCCCCcEEECCCCCCCccChh
Q psy5670         414 LTALSVLSLDNNELEYIEENALK-NSTSLQDFHLN--G----NKLTEIP------KVLRNLHSLKTLDLGDNLITEINNL  480 (1269)
Q Consensus       414 l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~i~~~~~~  480 (1269)
                      +++|+.|.+..+.++......+. .+++|++|+++  +    +.++..|      ..+..+++|++|++++ .+++....
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            55666666655555544333333 35666666666  3    3444322      2245566777777765 45544444


Q ss_pred             hhhc-cccCCeeeccCCcCCCCChhhh-cCCCCCCEEEcCCCcccccccc-ccCCCCCccEEEcccccccccC--CcCCC
Q psy5670         481 SLNS-LHQLAGLRLTENNISNISKGVF-EKLSVLTILNLASNKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG--GLFPK  555 (1269)
Q Consensus       481 ~~~~-l~~L~~L~Ls~n~l~~i~~~~f-~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~--~~~~~  555 (1269)
                      .+.. +++|+.|+|++|.++......+ .++++|++|+|++|.+++.... ....+++|+.|++++|.++.-.  .....
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence            4443 6667777777776643322222 5567777777777776543332 2234667777777777664211  11134


Q ss_pred             CCCCcEEEccCC
Q psy5670         556 LPNLVWLNISEN  567 (1269)
Q Consensus       556 l~~L~~L~Ls~n  567 (1269)
                      +++|+...+..+
T Consensus       530 lp~l~i~~~~~~  541 (594)
T 2p1m_B          530 MPKLNVEVIDER  541 (594)
T ss_dssp             CTTEEEEEECSS
T ss_pred             CCCCEEEEecCC
Confidence            566655555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.87  E-value=7.3e-22  Score=208.21  Aligned_cols=169  Identities=34%  Similarity=0.582  Sum_probs=119.8

Q ss_pred             CCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccc
Q psy5670         768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTF  847 (1269)
Q Consensus       768 ~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f  847 (1269)
                      .||..|.|..      ..++|++.+++++ |..+|..+++|++++|.|+.+++.                       ..|
T Consensus         1 ~CP~~C~C~~------~~l~~s~~~l~~i-p~~~~~~l~~L~l~~n~i~~~~~~-----------------------~~~   50 (192)
T 1w8a_A            1 DCPAMCHCEG------TTVDCTGRGLKEI-PRDIPLHTTELLLNDNELGRISSD-----------------------GLF   50 (192)
T ss_dssp             CCCTTSEEET------TEEECTTSCCSSC-CSCCCTTCSEEECCSCCCCSBCCS-----------------------CSG
T ss_pred             CcCCCCEECC------CEEEcCCCCcCcC-ccCCCCCCCEEECCCCcCCccCCc-----------------------ccc
Confidence            4999999952      4677777777666 665555555555555555444432                       235


Q ss_pred             cCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccE
Q psy5670         848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQS  925 (1269)
Q Consensus       848 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~  925 (1269)
                      ..+++|++|+|++|+|+.+.+.+|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++.+. + .+++|+.
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            6666666666666777666666677777777777777777777776677777777777777777777665 5 6678889


Q ss_pred             EEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670         926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       926 l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      |++++|||.|+|+. .||..|++.....   .....|..|...++
T Consensus       131 L~L~~N~l~c~c~l-~~~~~~l~~~~~~---~~~~~C~~P~~l~~  171 (192)
T 1w8a_A          131 LNLASNPFNCNCHL-AWFAEWLRKKSLN---GGAARCGAPSKVRD  171 (192)
T ss_dssp             EECTTCCBCCSGGG-HHHHHHHHHHCCS---GGGCBBCSSTTTTT
T ss_pred             EEeCCCCccCcCcc-hHHHHHHHHcCCC---CCCCCCCCChHHcC
Confidence            99999999999996 7999999876332   24678999998866

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=7.2e-24  Score=266.26  Aligned_cols=204  Identities=14%  Similarity=0.096  Sum_probs=126.6

Q ss_pred             CCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEcc---------CCCCCccChh
Q psy5670         365 DLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIES-NSLDSLTALSVLSLD---------NNELEYIEEN  433 (1269)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls---------~n~i~~~~~~  433 (1269)
                      .+++|++|++++|.++... ...+..+++|+.|++++| +.+... .....+++|++|++.         .+.++.....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            3445555555555543211 112345555666666555 222111 112235666666662         2344433333


Q ss_pred             hh-cCCCCCcEEEccCCCCCCch-hhh-cCCCCCcEEECC--C----CCCCccCh-----hhhhccccCCeeeccCCcCC
Q psy5670         434 AL-KNSTSLQDFHLNGNKLTEIP-KVL-RNLHSLKTLDLG--D----NLITEINN-----LSLNSLHQLAGLRLTENNIS  499 (1269)
Q Consensus       434 ~~-~~l~~L~~L~Ls~n~l~~lp-~~l-~~l~~L~~L~Ls--~----n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~  499 (1269)
                      .+ ..+++|++|.+..+.++... ..+ ..+++|+.|+++  +    +.+++.+.     ..+..+++|+.|+|++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            33 34889999988888887432 233 358899999998  4    55663322     2256788999999977 554


Q ss_pred             CCChhhhc-CCCCCCEEEcCCCcccccccccc-CCCCCccEEEcccccccccC--CcCCCCCCCcEEEccCCcCc
Q psy5670         500 NISKGVFE-KLSVLTILNLASNKIQKVEAGTF-DNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       500 ~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~-~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      ......+. .+++|+.|++++|.+++.....+ .++++|+.|++++|.+++.+  .....+++|+.|++++|.++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            33322333 38899999999999876655444 56899999999999986432  34456789999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=7.1e-23  Score=234.29  Aligned_cols=249  Identities=20%  Similarity=0.220  Sum_probs=125.3

Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccccc-Cccccc-------CCCCCCEEECcCCCCCccccCcc
Q psy5670         266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFN-------VLTQLIVLDLSNNELTEEWVNAA  337 (1269)
Q Consensus       266 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~  337 (1269)
                      ++.++|+.|++++|.+ .+|......   |+.|+|++|.+... .+..+.       ++++|++|++++|.+.+. + +.
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~  113 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT-A-PP  113 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC-C-CC
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch-h-HH
Confidence            3445555566666665 555443322   55555555555321 122122       455666666666655542 1 22


Q ss_pred             cc--cCCCCccEEEcCCCCCcccCchhhcCC-----CCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC--c
Q psy5670         338 TF--SGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE--S  408 (1269)
Q Consensus       338 ~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~--~  408 (1269)
                      .+  ..+++|+.|++++|.+++. +..+..+     ++|++|++++|.++.+++..|..+++|+.|++++|++.+..  +
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            22  5555566666666655555 3334333     45555555555555555445555555555555555543321  1


Q ss_pred             ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh----hhcCCCCCcEEECCCCCCCccCh-hhhh
Q psy5670         409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK----VLRNLHSLKTLDLGDNLITEINN-LSLN  483 (1269)
Q Consensus       409 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~i~~~~~-~~~~  483 (1269)
                      ..+                      .+..+++|++|++++|.++.++.    .+..+++|++|++++|.+++..+ ..+.
T Consensus       193 ~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          193 SAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             HHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             HHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            111                      11344445555555554443221    22344555555555555555432 2334


Q ss_pred             ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccc
Q psy5670         484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD  548 (1269)
Q Consensus       484 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  548 (1269)
                      .+++|+.|+|++|.++.+|...+   ++|++|++++|++++++ . +..+++|+.|++++|.+++
T Consensus       251 ~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence            45566666666666665554332   56666666666666662 2 5566666666666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=9.2e-23  Score=233.34  Aligned_cols=247  Identities=18%  Similarity=0.184  Sum_probs=131.0

Q ss_pred             cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-ccccc-------CCCCCcEEEccCCcccccCcccc
Q psy5670         340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFA-------SLSNLHTLIMSNNKLKRIESNSL  411 (1269)
Q Consensus       340 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~-------~l~~L~~L~Ls~n~l~~~~~~~~  411 (1269)
                      .+.++|+.|++++|.+ .++.....   .|+.|++++|.++... +..+.       ++++|++|++++|++++..+..+
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445566666666666 33332222   1566666666654321 11111       45666666666666665544443


Q ss_pred             --cCCCCCCEEEccCCCCCccChhhhcCC-----CCCcEEEccCCCCCCch-hhhcCCCCCcEEECCCCCCCccC--hhh
Q psy5670         412 --DSLTALSVLSLDNNELEYIEENALKNS-----TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEIN--NLS  481 (1269)
Q Consensus       412 --~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~--~~~  481 (1269)
                        ..+++|++|++++|.+.++ +..+..+     ++|++|++++|.++.++ ..+..+++|++|++++|.+.+..  +..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              5566666666666666655 3444443     56666666666666554 45556666666666666654421  112


Q ss_pred             h--hccccCCeeeccCCcCCC---CChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEcccccccccCCcCCC
Q psy5670         482 L--NSLHQLAGLRLTENNISN---ISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPK  555 (1269)
Q Consensus       482 ~--~~l~~L~~L~Ls~n~l~~---i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l~~~~~~  555 (1269)
                      +  ..+++|++|++++|.++.   ++...|.++++|++|++++|++++..+ ..+..+++|+.|++++|.++.+|..+. 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            2  455555555555555542   222344455566666666666555442 333444555555555555554443332 


Q ss_pred             CCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc
Q psy5670         556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE  618 (1269)
Q Consensus       556 l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~  618 (1269)
                                             ++|+.|++++|+|++++.   +..+++|++|++++|++++
T Consensus       274 -----------------------~~L~~L~Ls~N~l~~~p~---~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -----------------------AKLSVLDLSYNRLDRNPS---PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -----------------------SEEEEEECCSSCCCSCCC---TTTSCEEEEEECTTCTTTC
T ss_pred             -----------------------CCceEEECCCCCCCCChh---HhhCCCCCEEeccCCCCCC
Confidence                                   344555555555555433   3455677778888877765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=3.1e-21  Score=221.90  Aligned_cols=234  Identities=18%  Similarity=0.241  Sum_probs=139.1

Q ss_pred             CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670         221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL  300 (1269)
Q Consensus       221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  300 (1269)
                      .+++.|+|++|.++.+++. +.++++|++|++++|.++.+ +..+.++++|++|++++|.++.+|.. |..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEEC
Confidence            4566666666666655543 55566666666666666633 34566666666666666666655543 456666666666


Q ss_pred             eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670         301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE  380 (1269)
Q Consensus       301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  380 (1269)
                      ++|.+.+..|..+..      ..+           ...+.++++|+.|++++|.++.++ ..+..+++|++|++++|.++
T Consensus       158 ~~n~~~~~~p~~~~~------~~~-----------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          158 RACPELTELPEPLAS------TDA-----------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEETTCCCCCSCSEE------EC------------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCccccChhHhh------ccc-----------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCC
Confidence            665554443333221      000           122344555555555555555443 23555666666666666666


Q ss_pred             ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCC-CCchhhhc
Q psy5670         381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL-TEIPKVLR  459 (1269)
Q Consensus       381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~lp~~l~  459 (1269)
                      .+++ .+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+.++++|++|++++|.+ ..+|..+.
T Consensus       220 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             cCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            5544 355666666666666666666666666666777777777666666666666777777777777653 36677777


Q ss_pred             CCCCCcEEECCCCCCCc
Q psy5670         460 NLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~  476 (1269)
                      .+++|+.+++..+.+..
T Consensus       299 ~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          299 QLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GSCTTCEEECCGGGSCC
T ss_pred             hccCceEEeCCHHHHHH
Confidence            77777777776654443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=6.3e-22  Score=240.24  Aligned_cols=235  Identities=24%  Similarity=0.265  Sum_probs=149.0

Q ss_pred             CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670         245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL  324 (1269)
Q Consensus       245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  324 (1269)
                      ++|+.|+|++|.++.+.+..|.++++|++|+|++|.++.+++  |..+++|++|+|++|.++++++     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            355555555555555555555556666666666665554443  4556666666666666555432     256666666


Q ss_pred             cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccccccccccc-CCCCCcEEEccCCcc
Q psy5670         325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA-SLSNLHTLIMSNNKL  403 (1269)
Q Consensus       325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~l  403 (1269)
                      ++|.+.+  +..   ..+++|+.|++++|.++++.+..+..+++|+.|++++|.++.+.+..+. .+++|+.|+|++|.+
T Consensus       107 ~~N~l~~--~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          107 ANNNISR--VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CSSCCCC--EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             cCCcCCC--CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            6666654  211   2345666677777766666666666667777777777777665555553 567777777777777


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCC-ccChhhh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT-EINNLSL  482 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~-~~~~~~~  482 (1269)
                      +++.+  ...+++|+.|+|++|.++++++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. +..+..+
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            66633  33467777777777777776654 66777777777777777777777777777777777777776 4444455


Q ss_pred             hccccCCeeecc
Q psy5670         483 NSLHQLAGLRLT  494 (1269)
Q Consensus       483 ~~l~~L~~L~Ls  494 (1269)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            566666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=6.6e-22  Score=240.12  Aligned_cols=217  Identities=21%  Similarity=0.229  Sum_probs=143.9

Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      +++|++|+|++|.+..+++..|..+++|++|+|++|.+.+..+  +      ..+++|++|+|++|.++.+++.     +
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l~~~-----~   99 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L------ESLSTLRTLDLNNNYVQELLVG-----P   99 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C------TTCTTCCEEECCSSEEEEEEEC-----T
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c------ccCCCCCEEEecCCcCCCCCCC-----C
Confidence            3478888888888888877777888888888888888776543  3      2356788888888877766532     6


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCccccc-CCCCCCEEEC
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFN-VLTQLIVLDL  324 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L  324 (1269)
                      +|+.|++++|.++++.+.   .+++|+.|++++|.++.+++..|..+++|+.|+|++|.+++..+..+. .+++|+.|+|
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            777777777777766543   346677777777777777666666677777777777777766555554 5677777777


Q ss_pred             cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670         325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      ++|.+++  +  .....+++|+.|++++|.++++++. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus       177 s~N~l~~--~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          177 QYNFIYD--V--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTSCCCE--E--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBC
T ss_pred             CCCcccc--c--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCc
Confidence            7777665  1  2233466666666666666665554 5555666666666666655543 2445555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2e-20  Score=209.17  Aligned_cols=153  Identities=33%  Similarity=0.484  Sum_probs=68.3

Q ss_pred             CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670         168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL  247 (1269)
Q Consensus       168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  247 (1269)
                      ++++++++++.++.+|...   .++|++|+|++|++..++...|..      +++|++|++++|.++.+++..|.++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHR------LTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSS------CTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcC------CCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            3455666666555555432   134555555555544444333322      3444444444444444444444444444


Q ss_pred             CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670         248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN  327 (1269)
Q Consensus       248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  327 (1269)
                      ++|++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|+|++|.++++++..|..+++|+.|++++|
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            44444444444444444444444444444444444444444444444444444444444433333333344444444433


Q ss_pred             CC
Q psy5670         328 EL  329 (1269)
Q Consensus       328 ~l  329 (1269)
                      .+
T Consensus       168 ~l  169 (270)
T 2o6q_A          168 QL  169 (270)
T ss_dssp             CC
T ss_pred             cC
Confidence            33

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=8.9e-21  Score=213.84  Aligned_cols=203  Identities=23%  Similarity=0.267  Sum_probs=162.8

Q ss_pred             hcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCc
Q psy5670         363 FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ  442 (1269)
Q Consensus       363 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  442 (1269)
                      +.+++++++++++++.++.++....   ++++.|++++|.++++.+..|..+++|+.|+|++|.+..+.+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4455666666776666666654332   4667777777777776666677777777777777777766543  6778888


Q ss_pred             EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcc
Q psy5670         443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI  522 (1269)
Q Consensus       443 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i  522 (1269)
                      +|++++|.++.+|..+..+++|++|++++|+++++++..|..+++|+.|+|++|+++.++...|..+++|+.|+|++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            88888888888888888889999999999999988888888999999999999999888888888999999999999999


Q ss_pred             ccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         523 QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       523 ~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      +.+++..|..+++|+.|+|++|.++.+|..+...++|+.|++++|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            998888888899999999999999988877777777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=7.8e-21  Score=213.39  Aligned_cols=224  Identities=25%  Similarity=0.340  Sum_probs=119.2

Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCC
Q psy5670         274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN  353 (1269)
Q Consensus       274 L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n  353 (1269)
                      ++..+..+..+|...   .++|++|++++|.++++++..|.++++|++|++++|.+..  +....|.++++|+.|++++|
T Consensus        12 ~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc--cCHHHccCCcCCCEEECCCC
Confidence            444444555555432   2456666666666666555555666666666666665554  33444555555555555555


Q ss_pred             CCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccCh
Q psy5670         354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIEE  432 (1269)
Q Consensus       354 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~  432 (1269)
                      .+..+.+..|..+++|++|++++|.+..++...+..+++|+.|++++|.++++. +..+..+++|+.|++++|.+.++.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            555555555555555555555555555554444555555555555555554432 3344444444444444444444443


Q ss_pred             hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCc-EEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCC
Q psy5670         433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK-TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV  511 (1269)
Q Consensus       433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~  511 (1269)
                      ..+..+++|+                    .|. +|++++|.++++.+..+.. .+|+.|++++|.++.++...|..+++
T Consensus       167 ~~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          167 TDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             GGGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             HHhhhhhhcc--------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence            3333322222                    222 5555555555554443332 25666666666666666666666667


Q ss_pred             CCEEEcCCCccc
Q psy5670         512 LTILNLASNKIQ  523 (1269)
Q Consensus       512 L~~L~Ls~n~i~  523 (1269)
                      |+.|++++|++.
T Consensus       226 L~~L~l~~N~~~  237 (276)
T 2z62_A          226 LQKIWLHTNPWD  237 (276)
T ss_dssp             CCEEECCSSCBC
T ss_pred             ccEEEccCCccc
Confidence            777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=3e-21  Score=216.04  Aligned_cols=147  Identities=29%  Similarity=0.459  Sum_probs=135.6

Q ss_pred             CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccc
Q psy5670         805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY  884 (1269)
Q Consensus       805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~  884 (1269)
                      +++|++++|.++.+++..|.++++|++|++++|+++.+.+..|.++++|++|+|++|+++.+++..|.++++|++|+|++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            46788888888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhcc
Q psy5670         885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR  951 (1269)
Q Consensus       885 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~  951 (1269)
                      |+|+.+++..|..+++|++|+|++|+++.+++. + .+++|+.|++++|||.|+|+...++..|...-.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS  235 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCC
Confidence            999999999999999999999999999999988 6 789999999999999999987788888876543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=6.6e-21  Score=219.15  Aligned_cols=231  Identities=16%  Similarity=0.151  Sum_probs=108.0

Q ss_pred             CCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEE
Q psy5670         293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL  372 (1269)
Q Consensus       293 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  372 (1269)
                      +.++.|+|++|.++.+++. +.++++|++|++++|.+..  + +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~--l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLME--L-PDTMQQFAGLETLTLARNPLRALP-ASIASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCC--C-CSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEE
T ss_pred             cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccc--h-hHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEE
Confidence            4555666666655544332 3445555555555555542  2 334444555555555555554332 234444444444


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670         373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT  452 (1269)
Q Consensus       373 ~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (1269)
                      ++++|.+....+..+..      ..+         ...+.++++|++|++++|.+..++ ..+.++++|++|++++|.++
T Consensus       156 ~L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCC
Confidence            44443322111111110      000         011333555555555555555332 23555555555555555555


Q ss_pred             CchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccC
Q psy5670         453 EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFD  531 (1269)
Q Consensus       453 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~  531 (1269)
                      .+|..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+ +.++ ..|.++++|+.|+|++|++.+..+..+.
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            5555555555555555555555554444445555555555555444 2222 2244455555555555544444444444


Q ss_pred             CCCCccEEEccccc
Q psy5670         532 NNSNLVAIRLDGNY  545 (1269)
Q Consensus       532 ~~~~L~~L~L~~n~  545 (1269)
                      .+++|+.+++..+.
T Consensus       299 ~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          299 QLPANCIILVPPHL  312 (328)
T ss_dssp             GSCTTCEEECCGGG
T ss_pred             hccCceEEeCCHHH
Confidence            44444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=6.6e-21  Score=221.63  Aligned_cols=251  Identities=20%  Similarity=0.308  Sum_probs=181.8

Q ss_pred             CCCCC-CcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670          31 QAPDE-CKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ  109 (1269)
Q Consensus        31 ~cp~~-C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~  109 (1269)
                      .||.. |+|.+.                   .|.|...+++.+|.     .+ |.++++|+|++|.    .+.+++++|+
T Consensus         1 gCp~~~C~C~~~-------------------~v~C~~~~Lt~iP~-----~l-~~~l~~L~Ls~N~----i~~i~~~~f~   51 (350)
T 4ay9_X            1 GCHHRICHCSNR-------------------VFLCQESKVTEIPS-----DL-PRNAIELRFVLTK----LRVIQKGAFS   51 (350)
T ss_dssp             -CCCSSSEEETT-------------------EEEEESTTCCSCCT-----TC-CTTCSEEEEESCC----CSEECTTSST
T ss_pred             CCCCCccEeeCC-------------------EEEecCCCCCccCc-----Cc-CCCCCEEEccCCc----CCCcCHHHHc
Confidence            38865 999742                   68899889999882     22 6789999999999    6788988999


Q ss_pred             CCcccceeEeccccC-CCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCC
Q psy5670         110 TLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFC  188 (1269)
Q Consensus       110 ~l~~L~~L~L~~~~i-~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~  188 (1269)
                      ++++|++|+|++|++ +.++.++|.++++|+.+...+++     ....+.++.| .++++|++|++++|.+..+++..+.
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-----~l~~l~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~~  125 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-----NLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKI  125 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-----TCCEECTTSB-CCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-----cccccCchhh-hhccccccccccccccccCCchhhc
Confidence            999999999999998 55777889999888765443221     1235667778 8888888888888888888877777


Q ss_pred             CCCCCcEEECCC-CCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEcc-CCCCcccchhhhc
Q psy5670         189 PLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ-GNILTFLADHALD  266 (1269)
Q Consensus       189 ~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~  266 (1269)
                      ...++..|++.+ +++..++...|...     ...++.|+|++|+++.+++..|. ..+|++|++. +|.++.+++++|.
T Consensus       126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~-----~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~  199 (350)
T 4ay9_X          126 HSLQKVLLDIQDNINIHTIERNSFVGL-----SFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFH  199 (350)
T ss_dssp             CBSSCEEEEEESCTTCCEECTTSSTTS-----BSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTT
T ss_pred             ccchhhhhhhccccccccccccchhhc-----chhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhc
Confidence            777788888754 56776666665442     24677888888888888776554 4677888876 4667777777788


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCC-cccccCcccccCCCCCCEEECcCC
Q psy5670         267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNN  327 (1269)
Q Consensus       267 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  327 (1269)
                      ++++|++|++++|+++.+|...|.   +|+.|.+.++ .+..+++  +.++++|+.++++++
T Consensus       200 ~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          200 GASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEKLVALMEASLTYP  256 (350)
T ss_dssp             TEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSCH
T ss_pred             cCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC--chhCcChhhCcCCCC
Confidence            888888888888888888776544   4445544333 3444443  566777777776543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=7.3e-21  Score=208.61  Aligned_cols=196  Identities=23%  Similarity=0.346  Sum_probs=151.0

Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCCc-ccccCcccccCCCCCCEEEccC-CCCCccChhhhcCCCCCcEEE
Q psy5670         368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDN-NELEYIEENALKNSTSLQDFH  445 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~  445 (1269)
                      +|++|++++|.++.+++..|..+++|+.|++++|+ ++.+.+..|.++++|++|++++ |.+..+.+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777777777777777778888887775 7777777777777888888877 777777777777888888888


Q ss_pred             ccCCCCCCchhhhcCCCCCc---EEECCCC-CCCccChhhhhccccCC-eeeccCCcCCCCChhhhcCCCCCCEEEcCCC
Q psy5670         446 LNGNKLTEIPKVLRNLHSLK---TLDLGDN-LITEINNLSLNSLHQLA-GLRLTENNISNISKGVFEKLSVLTILNLASN  520 (1269)
Q Consensus       446 Ls~n~l~~lp~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n  520 (1269)
                      +++|.++.+|. +..+++|+   +|++++| .++++++..|..+++|+ .|++++|.+..++...|.. ++|+.|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            88888887776 66677776   8888888 88887777777888888 8888888888777777766 77888888888


Q ss_pred             c-cccccccccCCC-CCccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670         521 K-IQKVEAGTFDNN-SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       521 ~-i~~~~~~~~~~~-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  567 (1269)
                      + ++++++..|.++ ++|+.|++++|.++.+|..  .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            4 887777777777 7888888888888777643  4566777766654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=1.9e-21  Score=227.38  Aligned_cols=252  Identities=19%  Similarity=0.268  Sum_probs=133.5

Q ss_pred             EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCc----ccccCCC-CccEEEcCCCCCcccCchhhcCC-----C
Q psy5670         298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA----ATFSGLH-RLVVLNIAYNKMNKLDSSIFKDL-----Y  367 (1269)
Q Consensus       298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~  367 (1269)
                      +.++.|.+++..+..+...++|++|++++|.++.  ...    ..+.+++ +|++|++++|.++......+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4556666666555555555556666666666654  222    3444555 56666666666555544444332     4


Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCC-CCCCEEEccCCCCCccChhhh----cC-CCCC
Q psy5670         368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL-TALSVLSLDNNELEYIEENAL----KN-STSL  441 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~~-l~~L  441 (1269)
                      +|++|++++|.++......+..                    .+..+ ++|++|+|++|.+.......+    .. .++|
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  140 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI  140 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred             CccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence            5555555555554433322111                    11222 444445555444444433322    22 2455


Q ss_pred             cEEEccCCCCC-----CchhhhcCCC-CCcEEECCCCCCCccChhhhh----cc-ccCCeeeccCCcCCC-----CChhh
Q psy5670         442 QDFHLNGNKLT-----EIPKVLRNLH-SLKTLDLGDNLITEINNLSLN----SL-HQLAGLRLTENNISN-----ISKGV  505 (1269)
Q Consensus       442 ~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~----~l-~~L~~L~Ls~n~l~~-----i~~~~  505 (1269)
                      ++|++++|.++     .++..+..++ +|++|++++|.+++..+..+.    .+ ++|+.|+|++|.++.     ++...
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            55555555555     2333444444 666666666666665554333    23 466666666666654     22222


Q ss_pred             hcCCCCCCEEEcCCCccccccc----cccCCCCCccEEEcccccccc--------cCCcCCCCCCCcEEEccCCcCcc
Q psy5670         506 FEKLSVLTILNLASNKIQKVEA----GTFDNNSNLVAIRLDGNYLTD--------IGGLFPKLPNLVWLNISENLLEW  571 (1269)
Q Consensus       506 f~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~Ls~n~l~~  571 (1269)
                      ....++|++|+|++|++++...    ..+..+++|+.|++++|.+..        ++..+..+++|+.|++++|.+..
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            2224467777777777665443    234556677777777776332        33456667777777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=3.4e-20  Score=192.91  Aligned_cols=166  Identities=29%  Similarity=0.557  Sum_probs=118.5

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN  848 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~  848 (1269)
                      ||..|+|.      ...++|++.+++.+ |..++.                        +|+.|++++|+++.+++..|.
T Consensus         1 Cp~~C~C~------~~~l~~~~~~l~~~-p~~~~~------------------------~l~~L~l~~n~l~~~~~~~~~   49 (177)
T 2o6r_A            1 CPSRCSCS------GTEIRCNSKGLTSV-PTGIPS------------------------SATRLELESNKLQSLPHGVFD   49 (177)
T ss_dssp             CCTTCEEE------TTEEECCSSCCSSC-CTTCCT------------------------TCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEeC------CCEEEecCCCCccC-CCCCCC------------------------CCcEEEeCCCcccEeCHHHhc
Confidence            89999993      24566666666655 544444                        455555555555555555666


Q ss_pred             CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670         849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI  926 (1269)
Q Consensus       849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l  926 (1269)
                      ++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            666777777777777777776677777777777777777777777777777777777777777777776 5 56788899


Q ss_pred             EeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCc
Q psy5670         927 TLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE  967 (1269)
Q Consensus       927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~  967 (1269)
                      ++++|||.|+|+...|+..|+......+  .....|..+..
T Consensus       130 ~l~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~~~~  168 (177)
T 2o6r_A          130 WLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGK  168 (177)
T ss_dssp             ECCSSCBCCCHHHHHHHHHHHHHTGGGE--ESCCBBTTTCC
T ss_pred             EecCCCeeccCccHHHHHHHHhhCcccc--ccCcEeCCCCc
Confidence            9999999999996689999998764333  36789987553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=4.3e-20  Score=206.64  Aligned_cols=179  Identities=34%  Similarity=0.467  Sum_probs=107.1

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ..+++|+.|++++|.+..++.  +..+++|++|++++|++.+..  .      +..+++|++|++++|.++.+++..|.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~------l~~l~~L~~L~L~~n~l~~~~~~~~~~  107 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--A------LKELTNLTYLILTGNQLQSLPNGVFDK  107 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--G------GTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--h------hcCCCCCCEEECCCCccCccChhHhcC
Confidence            566777777777777776654  566777777777777766542  1      223556666666666666666655666


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +++|++|++++|.++++.+..|.++++|++|++++|+++.+++..|..+++|++|++++|.++++++..|..+++|+.|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            66666666666666666555566666666666666666666655555556666666666655555555555555555555


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCC
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNK  354 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~  354 (1269)
                      +++|.+.+  +.+..+..+++|+.|++++|.
T Consensus       188 L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          188 LYQNQLKS--VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCCc--cCHHHHhCCcCCCEEEccCCC
Confidence            55555544  223334444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=1.3e-20  Score=220.42  Aligned_cols=250  Identities=20%  Similarity=0.262  Sum_probs=139.1

Q ss_pred             EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCc----ccccCCC-CCcEEEeeCCcccccCcccccCC-----CCC
Q psy5670         250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSR-DLKEVYLQNNSINVLAPGIFNVL-----TQL  319 (1269)
Q Consensus       250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L  319 (1269)
                      +.++.|.+++..+..+...++|++|++++|.++..+.    ..|..++ +|++|+|++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4556666666555555555556666666666666555    4455555 56666666666555544444332     455


Q ss_pred             CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchh----hcCC-CCCcEEEccCCcccccccccc----cC-
Q psy5670         320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI----FKDL-YRLQVLHLENNQIESIHRNTF----AS-  389 (1269)
Q Consensus       320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~i~~~~f----~~-  389 (1269)
                      ++|++++|.++                          ...+..    +..+ ++|++|++++|.++......+    .. 
T Consensus        83 ~~L~Ls~n~l~--------------------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~  136 (362)
T 3goz_A           83 TSLNLSGNFLS--------------------------YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL  136 (362)
T ss_dssp             CEEECCSSCGG--------------------------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred             cEEECcCCcCC--------------------------hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence            55555555544                          333322    2222 455555555555544433222    22 


Q ss_pred             CCCCcEEEccCCcccccCcc----cccCCC-CCCEEEccCCCCCccChhh----hcCC-CCCcEEEccCCCCCC-----c
Q psy5670         390 LSNLHTLIMSNNKLKRIESN----SLDSLT-ALSVLSLDNNELEYIEENA----LKNS-TSLQDFHLNGNKLTE-----I  454 (1269)
Q Consensus       390 l~~L~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~Ls~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~l~~-----l  454 (1269)
                      .++|++|++++|.+++....    .+..++ +|++|+|++|.+.+..+..    +..+ ++|++|+|++|.++.     +
T Consensus       137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l  216 (362)
T 3goz_A          137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL  216 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence            24566666666665543322    223333 6677777777666655433    3334 477777777777765     5


Q ss_pred             hhhhcC-CCCCcEEECCCCCCCccChhh----hhccccCCeeeccCCcCCCCChh-------hhcCCCCCCEEEcCCCcc
Q psy5670         455 PKVLRN-LHSLKTLDLGDNLITEINNLS----LNSLHQLAGLRLTENNISNISKG-------VFEKLSVLTILNLASNKI  522 (1269)
Q Consensus       455 p~~l~~-l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~-------~f~~l~~L~~L~Ls~n~i  522 (1269)
                      +..+.. .++|++|++++|.+++.....    +..+++|+.|+|++|.+..+...       .+..+++|+.|++++|++
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            555554 347777777777777765533    24456677777777765544432       345566677777777766


Q ss_pred             ccc
Q psy5670         523 QKV  525 (1269)
Q Consensus       523 ~~~  525 (1269)
                      ...
T Consensus       297 ~~~  299 (362)
T 3goz_A          297 HPS  299 (362)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1e-19  Score=207.21  Aligned_cols=242  Identities=26%  Similarity=0.334  Sum_probs=155.6

Q ss_pred             EccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCC
Q psy5670         421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN  500 (1269)
Q Consensus       421 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  500 (1269)
                      .+..+.+..+.  .+..+++|++|++++|.++.+| .+..+++|++|++++|.++++.+  +..+++|+.|++++|.+..
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence            34444444432  2345678888888888888887 57778888888888888888766  7788888888888888877


Q ss_pred             CChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCC
Q psy5670         501 ISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD  580 (1269)
Q Consensus       501 i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~  580 (1269)
                      ++  .+..+++|+.|++++|+++++..  +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++.      
T Consensus       100 ~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------  168 (308)
T 1h6u_A          100 VS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------  168 (308)
T ss_dssp             CG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------
T ss_pred             ch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------
Confidence            65  37788888888888888877643  7777888888888888877654 5666677777776666654432      


Q ss_pred             ccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCC
Q psy5670         581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGN  660 (1269)
Q Consensus       581 L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N  660 (1269)
                                         +..+++|+.|++++|+++++++..-.++|+.|+|++|+++++.+  +..+++|+.|++++|
T Consensus       169 -------------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          169 -------------------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             -------------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred             -------------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence                               23344555555555555555443333456666666666665553  566667777777777


Q ss_pred             CcccccccccccccCC------CCCCCCceEecCCccccccCChh
Q psy5670         661 RLKNINQTALRISPLP------SHKNIPDFYIGENPFQCDCNMQW  699 (1269)
Q Consensus       661 ~l~~l~~~~~~~~~~~------~~~~l~~l~l~~Np~~c~c~~~~  699 (1269)
                      +++..+........++      ....+....++.|.+.|.+...|
T Consensus       228 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~is~~g~y~~~~~~w  272 (308)
T 1h6u_A          228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW  272 (308)
T ss_dssp             EEECCCEECCSEEEEECCCBCTTSCBCCCSEEGGGCEEETTEEEE
T ss_pred             eeecCCeeecccEeccceeECCCCCCCCCCccccCCEEeCCceeE
Confidence            6665443222110000      11123334566666666666555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=7.1e-19  Score=200.34  Aligned_cols=193  Identities=26%  Similarity=0.421  Sum_probs=92.1

Q ss_pred             CCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEE
Q psy5670         342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLS  421 (1269)
Q Consensus       342 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  421 (1269)
                      +++|+.|++++|.+..++  .+..+++|++|++++|.++.+++  +..+++|+.|++++|+++++.  .+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence            344444445444444432  23444555555555555544443  444555555555555444432  244444555555


Q ss_pred             ccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCC
Q psy5670         422 LDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI  501 (1269)
Q Consensus       422 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i  501 (1269)
                      +++|.+.++.+  +..+++|++|++++|.++.++. +..+++|++|++++|.++++.+  +..+++|+.|++++|.+..+
T Consensus       114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            55555444332  4445555555555555554443 4444555555555555544433  44444555555555555444


Q ss_pred             ChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670         502 SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       502 ~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      +.  +..+++|+.|++++|+++++.+  +..+++|+.|++++|.++..
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            33  4445555555555555544432  44444555555555544443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.80  E-value=3.5e-19  Score=183.45  Aligned_cols=135  Identities=24%  Similarity=0.421  Sum_probs=81.5

Q ss_pred             EEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccccc
Q psy5670         807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK  886 (1269)
Q Consensus       807 ~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~  886 (1269)
                      .+++++|.++.++...+   ++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+
T Consensus        13 ~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            34444444444443221   344445555555555545555555555555555555555555555555555555555555


Q ss_pred             CcccChhhhhcCcccceEeccCccceeeecccccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCc-----CccCcce
Q psy5670         887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV-----HDISQIR  961 (1269)
Q Consensus       887 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i-----~~~~~~~  961 (1269)
                      |+.+++..|..                      +++|+.|+|++|||.|+|....|+..|++.....+     .+...++
T Consensus        90 l~~~~~~~~~~----------------------l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~  147 (170)
T 3g39_A           90 LKSIPRGAFDN----------------------LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSAR  147 (170)
T ss_dssp             CCCCCTTTTTT----------------------CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSB
T ss_pred             cCEeCHHHhcC----------------------CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccce
Confidence            55555555544                      45667788899999999975589999999876555     3566789


Q ss_pred             eccCC
Q psy5670         962 CMTGS  966 (1269)
Q Consensus       962 C~~p~  966 (1269)
                      |..+.
T Consensus       148 C~~~~  152 (170)
T 3g39_A          148 CSGTN  152 (170)
T ss_dssp             BCC-C
T ss_pred             eCCCC
Confidence            98764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=5e-19  Score=205.76  Aligned_cols=238  Identities=21%  Similarity=0.340  Sum_probs=147.6

Q ss_pred             cEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCC-CCCcccccCCCCCcE-EEee
Q psy5670         224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDLKE-VYLQ  301 (1269)
Q Consensus       224 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~L~  301 (1269)
                      ++++.++++++.+|.. +  .+++++|+|++|.++.+++++|.++++|++|+|++|++. .++...|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4566677777777643 2  256777777777777777777777777777777777764 366666777777665 4455


Q ss_pred             CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC-CCCcccCchhhcCCC-CCcEEEccCCcc
Q psy5670         302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY-NKMNKLDSSIFKDLY-RLQVLHLENNQI  379 (1269)
Q Consensus       302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l  379 (1269)
                      +|+++.+++..|..+++|+.|++++|.+..  +....+....++..+++.+ +.+..++...|..+. .++.|++++|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             CCcccccCchhhhhcccccccccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            677777777777777777777777777665  3344444555666666643 456666665555553 466677777777


Q ss_pred             cccccccccCCCCCcEEEccC-CcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCC-CCCCchhh
Q psy5670         380 ESIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN-KLTEIPKV  457 (1269)
Q Consensus       380 ~~i~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~lp~~  457 (1269)
                      +.++..+|. ..+|+.|++.+ |.++.+.+..|.++++|+.|+|++|+++.+++..|.   +|+.|.+.++ .++.+|. 
T Consensus       167 ~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          167 QEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             CEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred             cCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence            766665553 34566666653 555555555666666666666666666666554433   3444443332 3455553 


Q ss_pred             hcCCCCCcEEECCC
Q psy5670         458 LRNLHSLKTLDLGD  471 (1269)
Q Consensus       458 l~~l~~L~~L~Ls~  471 (1269)
                      +..+++|+.+++.+
T Consensus       242 l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          242 LEKLVALMEASLTY  255 (350)
T ss_dssp             TTTCCSCCEEECSC
T ss_pred             chhCcChhhCcCCC
Confidence            45555566665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.78  E-value=1.1e-18  Score=180.31  Aligned_cols=112  Identities=29%  Similarity=0.493  Sum_probs=65.3

Q ss_pred             CEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCC
Q psy5670         854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSN  931 (1269)
Q Consensus       854 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~N  931 (1269)
                      +.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. | .+++|+.|+|++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            3344444444444444444444444444444444444444444444444445555555444444 3 4556778899999


Q ss_pred             cccccCCcHHHHHHHHHhccCCcC--------ccCcceeccC
Q psy5670         932 PWSCDCDFTEKFRDYLQRSRSSVH--------DISQIRCMTG  965 (1269)
Q Consensus       932 p~~C~C~~~~~~~~w~~~~~~~i~--------~~~~~~C~~p  965 (1269)
                      ||.|+|....|+..|++.....+.        +.+.+.|..+
T Consensus       116 ~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  157 (174)
T 2r9u_A          116 PWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT  157 (174)
T ss_dssp             CBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred             CcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence            999999755899999987655443        4456677764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=6e-18  Score=186.77  Aligned_cols=178  Identities=31%  Similarity=0.483  Sum_probs=90.9

Q ss_pred             cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670         222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ  301 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  301 (1269)
                      ..++++++++.++.+|.. +.  ++|+.|++++|.+..+.+..|.++++|++|++++|.++.+++..|..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            345555555555555432 21  345555555555555555555555555555555555555555555555555555555


Q ss_pred             CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670         302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES  381 (1269)
Q Consensus       302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  381 (1269)
                      +|.++++++..|..+++|++|++++|.++.  +....|.++++|+.|++++|.++.+++..|..+++|++|++++|.++.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            555555554445555555555555555443  333334444555555555555554444444455555555555555554


Q ss_pred             cccccccCCCCCcEEEccCCccc
Q psy5670         382 IHRNTFASLSNLHTLIMSNNKLK  404 (1269)
Q Consensus       382 i~~~~f~~l~~L~~L~Ls~n~l~  404 (1269)
                      +++..|..+++|+.|++++|.+.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHHhCCCCCCEEEeeCCcee
Confidence            44444444455555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=6.2e-19  Score=201.37  Aligned_cols=177  Identities=19%  Similarity=0.143  Sum_probs=86.8

Q ss_pred             CCcEEEccCCcccccCcccc--cCCCCCCEEEccCCCCCccCh----hhhcCCCCCcEEEccCCCCCCch-hhhcCCCCC
Q psy5670         392 NLHTLIMSNNKLKRIESNSL--DSLTALSVLSLDNNELEYIEE----NALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSL  464 (1269)
Q Consensus       392 ~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L  464 (1269)
                      +|++|++++|.+.+..+..+  ..+++|++|+|++|.+.+..+    ..+..+++|++|++++|.+..++ ..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            34445554444444444433  444455555555555443211    22334555555555555555443 344555555


Q ss_pred             cEEECCCCCCCcc---C-hhhhhccccCCeeeccCCcCCCCChh---hhcCCCCCCEEEcCCCccccccccccCCC---C
Q psy5670         465 KTLDLGDNLITEI---N-NLSLNSLHQLAGLRLTENNISNISKG---VFEKLSVLTILNLASNKIQKVEAGTFDNN---S  534 (1269)
Q Consensus       465 ~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~Ls~n~l~~i~~~---~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~  534 (1269)
                      ++|++++|++.+.   . ...+..+++|++|+|++|.++.++..   .+..+++|++|+|++|++++..+..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            5555555554431   1 11123455566666666655444332   24455666666666666665544444333   4


Q ss_pred             CccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       535 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      +|+.|++++|+++.+|..+.  ++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC
T ss_pred             cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC
Confidence            55566666665555554332  34444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=7.6e-19  Score=200.60  Aligned_cols=199  Identities=20%  Similarity=0.168  Sum_probs=114.0

Q ss_pred             CCcEEEccCCcccccccccc--cCCCCCcEEEccCCcccccCc----ccccCCCCCCEEEccCCCCCccChhhhcCCCCC
Q psy5670         368 RLQVLHLENNQIESIHRNTF--ASLSNLHTLIMSNNKLKRIES----NSLDSLTALSVLSLDNNELEYIEENALKNSTSL  441 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  441 (1269)
                      +|++|++++|.+....+..+  ..+++|++|++++|.+++..+    ..+..+++|++|+|++|.+.++.+..|+.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35555555555444333333  445555555555555544221    223345566666666666665555556666666


Q ss_pred             cEEEccCCCCCC---chh--hhcCCCCCcEEECCCCCCCccChh---hhhccccCCeeeccCCcCCCCChhhhcCC---C
Q psy5670         442 QDFHLNGNKLTE---IPK--VLRNLHSLKTLDLGDNLITEINNL---SLNSLHQLAGLRLTENNISNISKGVFEKL---S  510 (1269)
Q Consensus       442 ~~L~Ls~n~l~~---lp~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l---~  510 (1269)
                      ++|++++|++..   ++.  .+..+++|++|++++|.++.+...   .+..+++|++|+|++|.++.+.+..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            666666665542   221  224566666666666666544332   23556677777777777755522223333   5


Q ss_pred             CCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       511 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      +|++|+|++|+++.++...   .++|+.|+|++|+++++|. +..+++|+.|++++|.++
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence            7777777777777654332   2677777888877777654 566677777777777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4.1e-18  Score=183.67  Aligned_cols=199  Identities=23%  Similarity=0.397  Sum_probs=116.3

Q ss_pred             CeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccCC
Q psy5670         489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       489 ~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n  567 (1269)
                      +.++++++.++.+|...   .++|+.|++++|+|+++.+..|..+++|+.|+|++|.++.+ +..|.++++|+.|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34455555555555422   14555555555555555555555555666666666655554 345555555555555555


Q ss_pred             cCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccC
Q psy5670         568 LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFF  647 (1269)
Q Consensus       568 ~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~  647 (1269)
                      +++.++...                       +..++                      +|+.|+|++|+|+++.+..|.
T Consensus        91 ~l~~l~~~~-----------------------f~~l~----------------------~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           91 KITELPKSL-----------------------FEGLF----------------------SLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             CCCCCCTTT-----------------------TTTCT----------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCccCHhH-----------------------ccCCC----------------------CCCEEECCCCCCCEeCHHHcC
Confidence            444221100                       01112                      344444455555555556677


Q ss_pred             CCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccc
Q psy5670         648 MKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYN  727 (1269)
Q Consensus       648 ~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~  727 (1269)
                      .+++|+.|+|++|+|++++...+     ....+++.+++++|||.|+|.+.|+..+-..    .+  .......|..+. 
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~----~~--~~~~~~~C~~P~-  193 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTF-----SPLRAIQTMHLAQNPFICDCHLKWLADYLHT----NP--IETSGARCTSPR-  193 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHH----CC--CBCSCCBEEESG-
T ss_pred             CCCCCCEEECCCCcCCEECHHHH-----hCCCCCCEEEeCCCCcCCCCccHHHHHHHHh----CC--CCccCCCcCCch-
Confidence            77788888888888887776554     3456778888999999999999999875321    01  123456787554 


Q ss_pred             cCCCcccccccCCCccccccc
Q psy5670         728 RANPAILLKEAHSNQFLCEYE  748 (1269)
Q Consensus       728 ~~~~~~~l~~~~~~~~~~~~~  748 (1269)
                       ...+..+.+++..+|.|...
T Consensus       194 -~l~g~~l~~l~~~~~~c~~~  213 (220)
T 2v9t_B          194 -RLANKRIGQIKSKKFRCSAA  213 (220)
T ss_dssp             -GGTTCBGGGSCGGGCCC---
T ss_pred             -HHcCCchhhCCHHHCcCccc
Confidence             35567788888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.76  E-value=2.1e-17  Score=195.44  Aligned_cols=316  Identities=17%  Similarity=0.212  Sum_probs=188.2

Q ss_pred             ccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCC
Q psy5670         100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSI  179 (1269)
Q Consensus       100 ~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l  179 (1269)
                      ...|+..+|.++.+|+.+.|.. .++.|+..+|.+|.+|+.+++..       ....+...+| .++++|+.+.++.+ +
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~-------~l~~I~~~aF-~~c~~L~~i~~p~~-l  128 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD-------SVKMIGRCTF-SGCYALKSILLPLM-L  128 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT-------TCCEECTTTT-TTCTTCCCCCCCTT-C
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC-------CceEccchhh-cccccchhhcccCc-e
Confidence            4567888888888888888874 47888888888888888888842       2345666777 88888888777643 6


Q ss_pred             ccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcc
Q psy5670         180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF  259 (1269)
Q Consensus       180 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  259 (1269)
                      ..+...+|..+..+.......  +..+...+|.+      +.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.
T Consensus       129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~------c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~  198 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIPEG--VTVIGDEAFAT------CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI  198 (394)
T ss_dssp             CEECTTTTTTCCCSEEECCTT--CCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE
T ss_pred             eeecceeeecccccccccCcc--ccccchhhhcc------cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE
Confidence            677777777765444333222  22333334433      566777777543 45566666777777777766554 555


Q ss_pred             cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccc
Q psy5670         260 LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF  339 (1269)
Q Consensus       260 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  339 (1269)
                      +...+|.++..|+.+.+..+. ..+.... ....+|+.+.+.. .++.+....|.++..|+.+.+..+...   +....|
T Consensus       199 I~~~~F~~~~~L~~i~~~~~~-~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~---i~~~~F  272 (394)
T 4fs7_A          199 IRDYCFAECILLENMEFPNSL-YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLR---IGGSLF  272 (394)
T ss_dssp             ECTTTTTTCTTCCBCCCCTTC-CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCE---ECSCTT
T ss_pred             eCchhhccccccceeecCCCc-eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCcce---eecccc
Confidence            556666666666666665442 2222222 2345666666643 344455555666666666666554322   345556


Q ss_pred             cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCE
Q psy5670         340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV  419 (1269)
Q Consensus       340 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  419 (1269)
                      ..+..++.+.+....   ++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|.. .++.++..+|.+|++|+.
T Consensus       273 ~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~  347 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSN  347 (394)
T ss_dssp             TTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCE
T ss_pred             ccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCE
Confidence            666666666554432   33344555666666666433 5555555666666666666643 255555555666666666


Q ss_pred             EEccCCCCCccChhhhcCCCCCcEEEcc
Q psy5670         420 LSLDNNELEYIEENALKNSTSLQDFHLN  447 (1269)
Q Consensus       420 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  447 (1269)
                      +.+..+ +..+...+|.+|++|+.+++.
T Consensus       348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          348 INFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             EEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            655543 555555555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=1.9e-19  Score=212.66  Aligned_cols=236  Identities=21%  Similarity=0.242  Sum_probs=115.2

Q ss_pred             CCCCCCCCEEEccCCCCcccchh----hhcCCCCCcEEEccCCCCCCC----Cccc------ccCCCCCcEEEeeCCccc
Q psy5670         241 FSRLSRLQELYLQGNILTFLADH----ALDGLNSLTVLNLSVNNLVNI----PPEL------FNQSRDLKEVYLQNNSIN  306 (1269)
Q Consensus       241 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~l----~~~~------f~~l~~L~~L~L~~n~l~  306 (1269)
                      +..+++|++|+|++|.+....+.    .+..+++|++|+|++|.+..+    |..+      |..+++|++|+|++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            44555566666666655544332    244566666666666544322    1111      244555666666655555


Q ss_pred             c----cCcccccCCCCCCEEECcCCCCCccccCccc----ccCC---------CCccEEEcCCCCCcccC-c---hhhcC
Q psy5670         307 V----LAPGIFNVLTQLIVLDLSNNELTEEWVNAAT----FSGL---------HRLVVLNIAYNKMNKLD-S---SIFKD  365 (1269)
Q Consensus       307 ~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~l---------~~L~~L~Ls~n~l~~~~-~---~~~~~  365 (1269)
                      .    ..+..+..+++|++|+|++|.++..  ....    +..+         ++|+.|++++|.++... +   ..+..
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHH--HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            4    2233445556666666666655421  1111    1122         45555555555554211 1   23444


Q ss_pred             CCCCcEEEccCCcccc-----cccccccCCCCCcEEEccCCccc----ccCcccccCCCCCCEEEccCCCCCcc----Ch
Q psy5670         366 LYRLQVLHLENNQIES-----IHRNTFASLSNLHTLIMSNNKLK----RIESNSLDSLTALSVLSLDNNELEYI----EE  432 (1269)
Q Consensus       366 l~~L~~L~Ls~n~l~~-----i~~~~f~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~  432 (1269)
                      +++|++|++++|.++.     +.+..+..+++|+.|+|++|.++    ...+..+..+++|+.|+|++|.+...    .+
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            5556666666655542     12223445555555555555554    22233444555555555555555443    12


Q ss_pred             hhhc--CCCCCcEEEccCCCCCC-----chhhh-cCCCCCcEEECCCCCCCccC
Q psy5670         433 NALK--NSTSLQDFHLNGNKLTE-----IPKVL-RNLHSLKTLDLGDNLITEIN  478 (1269)
Q Consensus       433 ~~~~--~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~i~~~~  478 (1269)
                      ..+.  .+++|++|+|++|.++.     +|..+ .++++|++|++++|.+++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            2332  25555555555555554     44444 33455555555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=4.5e-18  Score=207.62  Aligned_cols=214  Identities=21%  Similarity=0.298  Sum_probs=117.8

Q ss_pred             CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670         440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS  519 (1269)
Q Consensus       440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  519 (1269)
                      +|+.|++++|.++.+|..+  +++|++|++++|.++.++    ..+++|+.|+|++|.++.++.  |.+  +|+.|+|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            6666666666666666543  255666666666665443    234555555555555554544  222  555555555


Q ss_pred             CccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670         520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE  599 (1269)
Q Consensus       520 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~  599 (1269)
                      |++++++.    .+++|+.|++++|.++.+|.                         .+++|+.|++++|+|+.++. + 
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-------------------------~l~~L~~L~Ls~N~L~~lp~-l-  178 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE-------------------------LPTSLEVLSVRNNQLTFLPE-L-  178 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC-------------------------CCTTCCEEECCSSCCSCCCC-C-
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC-------------------------cCCCcCEEECCCCCCCCcch-h-
Confidence            55555333    34445555555555544443                         33455555555555555544 1 


Q ss_pred             ccccccccEEEcCCCccccccCCcccCCc-------cEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccc
Q psy5670         600 IESQLRLTYFDASSNKLTELTGNAIPHSV-------ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRI  672 (1269)
Q Consensus       600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L-------~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~  672 (1269)
                       .  ++|+.|+|++|+|+.++.  ++.+|       +.|+|++|+|+.+. ..+..+++|+.|+|++|+|++..+..+..
T Consensus       179 -~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          179 -P--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             -C--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             -h--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence             1  566777777777776555  44466       88888888888754 45555888888888888888766554431


Q ss_pred             c-cCCCCCCCCce--Eec-------CCccccccCChhHHh
Q psy5670         673 S-PLPSHKNIPDF--YIG-------ENPFQCDCNMQWLQS  702 (1269)
Q Consensus       673 ~-~~~~~~~l~~l--~l~-------~Np~~c~c~~~~l~~  702 (1269)
                      . ..+... -+.+  +++       .|| .|+|...|+..
T Consensus       253 l~~~~~~~-~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~  290 (571)
T 3cvr_A          253 QTAQPDYH-GPRIYFSMSDGQQNTLHRP-LADAVTAWFPE  290 (571)
T ss_dssp             HHHSCC----CEEECCC----------C-CSHHHHTTCC-
T ss_pred             hhcCcccc-CCeeEEeeccccccccccc-chhhHHHHhhh
Confidence            1 111100 0111  122       255 79999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=4.7e-19  Score=209.25  Aligned_cols=185  Identities=21%  Similarity=0.263  Sum_probs=82.8

Q ss_pred             cCCCCccEEEcCCCCCccc----CchhhcCCCCCcEEEccCCccccccccccc----CC---------CCCcEEEccCCc
Q psy5670         340 SGLHRLVVLNIAYNKMNKL----DSSIFKDLYRLQVLHLENNQIESIHRNTFA----SL---------SNLHTLIMSNNK  402 (1269)
Q Consensus       340 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~----~l---------~~L~~L~Ls~n~  402 (1269)
                      ..+++|+.|+|++|.+...    .+..+..+++|++|++++|.++......+.    .+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            3444444555544444431    222344445555555555554432222221    11         455555555555


Q ss_pred             ccccC-c---ccccCCCCCCEEEccCCCCCc-----cChhhhcCCCCCcEEEccCCCC-----CCchhhhcCCCCCcEEE
Q psy5670         403 LKRIE-S---NSLDSLTALSVLSLDNNELEY-----IEENALKNSTSLQDFHLNGNKL-----TEIPKVLRNLHSLKTLD  468 (1269)
Q Consensus       403 l~~~~-~---~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l-----~~lp~~l~~l~~L~~L~  468 (1269)
                      ++... +   ..+..+++|+.|++++|.+..     +.+..+..+++|+.|+|++|.+     ..+|..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            44211 1   133344555555555555442     1222444555555555555555     23444555555555555


Q ss_pred             CCCCCCCccCh----hhhhc--cccCCeeeccCCcCCC-----CChhhhcCCCCCCEEEcCCCcccc
Q psy5670         469 LGDNLITEINN----LSLNS--LHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQK  524 (1269)
Q Consensus       469 Ls~n~i~~~~~----~~~~~--l~~L~~L~Ls~n~l~~-----i~~~~f~~l~~L~~L~Ls~n~i~~  524 (1269)
                      |++|.+++...    ..+..  +++|+.|+|++|.++.     ++...+.++++|+.|++++|++++
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            55555554321    22211  4445555555554433     333333444555555555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=1.7e-18  Score=200.41  Aligned_cols=218  Identities=16%  Similarity=0.184  Sum_probs=139.5

Q ss_pred             ccEEEcCCCCCcccCchhhcCC--CCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc-CcccccCCCCCCEEE
Q psy5670         345 LVVLNIAYNKMNKLDSSIFKDL--YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI-ESNSLDSLTALSVLS  421 (1269)
Q Consensus       345 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~  421 (1269)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+....+. +..+++|+.|++++|.+++. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            555666655544   2334444  5666677776666655544 33567777777777776654 444566777777777


Q ss_pred             ccCCCCCccChhhhcCCCCCcEEEccCC-CCC--CchhhhcCCCCCcEEECCCC-CCCcc-Chhhhhccc-cCCeeeccC
Q psy5670         422 LDNNELEYIEENALKNSTSLQDFHLNGN-KLT--EIPKVLRNLHSLKTLDLGDN-LITEI-NNLSLNSLH-QLAGLRLTE  495 (1269)
Q Consensus       422 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~-~L~~L~Ls~  495 (1269)
                      +++|.+.+..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777776666666777777777777777 566  35666677777777777777 77654 244566777 777777777


Q ss_pred             Cc--CC--CCChhhhcCCCCCCEEEcCCCc-cccccccccCCCCCccEEEccccc-ccccC-CcCCCCCCCcEEEccCC
Q psy5670         496 NN--IS--NISKGVFEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNY-LTDIG-GLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       496 n~--l~--~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~L~~n~-l~~l~-~~~~~l~~L~~L~Ls~n  567 (1269)
                      |.  ++  .++ ..+..+++|+.|++++|. +++.....+..+++|+.|++++|. +.... ..+..+++|+.|++++|
T Consensus       205 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          205 YRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            73  32  222 345667778888888777 665555566777777777777774 22111 23455666666666666

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=6.8e-17  Score=189.82  Aligned_cols=265  Identities=14%  Similarity=0.288  Sum_probs=163.6

Q ss_pred             ccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccC
Q psy5670         108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF  187 (1269)
Q Consensus       108 f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~  187 (1269)
                      +..+..++.+.+.. .++.|+.++|.++ +|+.+.+..       ....+...+| .++ +|+.+.+.. .+..++..+|
T Consensus       109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~-------~i~~I~~~aF-~~~-~L~~i~lp~-~l~~I~~~aF  176 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNE-------GLKSIGDMAF-FNS-TVQEIVFPS-TLEQLKEDIF  176 (401)
T ss_dssp             EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCT-------TCCEECTTTT-TTC-CCCEEECCT-TCCEECSSTT
T ss_pred             EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCC-------CccEECHHhc-CCC-CceEEEeCC-CccEehHHHh
Confidence            34456777777764 5777878888875 688887742       2345667777 664 688888875 6777887788


Q ss_pred             CCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670         188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG  267 (1269)
Q Consensus       188 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  267 (1269)
                      .+|++|+.++|+.|+++.++...|.       +.+|+.+.+.. .++.+...+|.++++|+.+.+..+ ++.+...+|.+
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~-------~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~  247 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFV-------YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE  247 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTT-------TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred             hCcccCCeeecCCCcceEechhhEe-------ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence            8888888888887777777776664       25677777764 377777777777777777777653 56666666766


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc-----ccCcccccCCCCCCEEECcCCCCCccccCcccccCC
Q psy5670         268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL  342 (1269)
Q Consensus       268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  342 (1269)
                       .+|+.+.+. +.++.++..+|.+|++|+.+.+.++.+.     .+...+|.++++|+.+++.+ .+..  +...+|.+|
T Consensus       248 -~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~aF~~c  322 (401)
T 4fdw_A          248 -SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI--LGQGLLGGN  322 (401)
T ss_dssp             -CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE--ECTTTTTTC
T ss_pred             -CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE--EhhhhhcCC
Confidence             567777773 3466666667777777777777665543     34455555555555555552 2333  344455555


Q ss_pred             CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCC-CCcEEEccC
Q psy5670         343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS-NLHTLIMSN  400 (1269)
Q Consensus       343 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~  400 (1269)
                      .+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+..+....|.+++ +++.|.+..
T Consensus       323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            55555555332 444444444444 455555554444444444444442 344444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.3e-18  Score=201.41  Aligned_cols=80  Identities=21%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             CCEEEccCCCCcccchhhhcCC--CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccccc-CcccccCCCCCCEEE
Q psy5670         247 LQELYLQGNILTFLADHALDGL--NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLD  323 (1269)
Q Consensus       247 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  323 (1269)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+...++.. ..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            445555555443   2233333  45555555555544443332 2344444444444444332 223334444444444


Q ss_pred             CcCCCCC
Q psy5670         324 LSNNELT  330 (1269)
Q Consensus       324 L~~n~l~  330 (1269)
                      +++|.+.
T Consensus       125 L~~~~l~  131 (336)
T 2ast_B          125 LEGLRLS  131 (336)
T ss_dssp             CTTCBCC
T ss_pred             CcCcccC
Confidence            4444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.74  E-value=3.8e-17  Score=193.22  Aligned_cols=336  Identities=18%  Similarity=0.273  Sum_probs=191.5

Q ss_pred             CCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCC
Q psy5670         178 SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNIL  257 (1269)
Q Consensus       178 ~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  257 (1269)
                      .+++|+..+|.+|++|+.+.+.. .++.+...+|.+      |.+|+.+++..+ ++.+...+|.++.+|+.+.+.. .+
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~------c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~-~l  128 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFEN------CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL-ML  128 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTT------CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT-TC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhC------CCCCcEEEeCCC-ceEccchhhcccccchhhcccC-ce
Confidence            36678888888888888888864 366666666654      567777777643 6666667777777777666553 35


Q ss_pred             cccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcc
Q psy5670         258 TFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA  337 (1269)
Q Consensus       258 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  337 (1269)
                      ..+...+|.++..++.....  .+..+...+|.++++|+.+.+.++ +..+....|.++.+|+.+++..+ +..  +...
T Consensus       129 ~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~--I~~~  202 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI--IRDY  202 (394)
T ss_dssp             CEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE--ECTT
T ss_pred             eeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE--eCch
Confidence            55555566665433332221  233444555666666666666432 34455555555556665555543 222  3344


Q ss_pred             cccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCC
Q psy5670         338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL  417 (1269)
Q Consensus       338 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  417 (1269)
                      +|.++..|+.+.+..+.. .+... +...                        .+|+.+.+.. .++.+....|.++..|
T Consensus       203 ~F~~~~~L~~i~~~~~~~-~i~~~-~~~~------------------------~~l~~i~ip~-~~~~i~~~~f~~~~~l  255 (394)
T 4fs7_A          203 CFAECILLENMEFPNSLY-YLGDF-ALSK------------------------TGVKNIIIPD-SFTELGKSVFYGCTDL  255 (394)
T ss_dssp             TTTTCTTCCBCCCCTTCC-EECTT-TTTT------------------------CCCCEEEECT-TCCEECSSTTTTCSSC
T ss_pred             hhccccccceeecCCCce-Eeehh-hccc------------------------CCCceEEECC-Cceecccccccccccc
Confidence            555555555554443321 11111 1122                        3444444432 2233334444455555


Q ss_pred             CEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCc
Q psy5670         418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN  497 (1269)
Q Consensus       418 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  497 (1269)
                      +.+.+..+ ...+...+|..+..++.+......+..  ..+..+.+|+.+.+.++ ++.+...+|.++.+|+.++|.. .
T Consensus       256 ~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~  330 (394)
T 4fs7_A          256 ESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-L  330 (394)
T ss_dssp             CEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-T
T ss_pred             eeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-c
Confidence            55555433 233444455555555555554432211  23455666666666543 5666666777777777777754 3


Q ss_pred             CCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEE
Q psy5670         498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL  562 (1269)
Q Consensus       498 l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L  562 (1269)
                      +..|+..+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...|.++++|+.+
T Consensus       331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            66777777777777877777665 77777777777778887777643 44445567777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.73  E-value=8.4e-17  Score=189.04  Aligned_cols=263  Identities=14%  Similarity=0.237  Sum_probs=153.9

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ..+..++.+.+.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|.+       .+|+.+.+.. .++.+...+|.+
T Consensus       110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-------~~L~~i~lp~-~l~~I~~~aF~~  178 (401)
T 4fdw_A          110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-------STVQEIVFPS-TLEQLKEDIFYY  178 (401)
T ss_dssp             EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEECCT-TCCEECSSTTTT
T ss_pred             EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-------CCceEEEeCC-CccEehHHHhhC
Confidence            4456777777764 4777777777765 6777777655 66666666653       2577777764 566666667777


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      |++|+.+++.+|.++.+...+|. +.+|+.+.+..+ ++.++..+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            77777777777777776666665 467777777643 66666666777777777766653 55566666665 5666666


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCc-----ccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEc
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-----KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM  398 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L  398 (1269)
                      +.+ .+..  +...+|.+|++|+.+.+.++.+.     .+....|.++++|+.+.+. +.++.+...+|.++.+|+.+.|
T Consensus       255 lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          255 LPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred             eCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence            633 3333  44556666666666666555443     3444555555555555555 2355555555555555555555


Q ss_pred             cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCC-CCcEEEcc
Q psy5670         399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST-SLQDFHLN  447 (1269)
Q Consensus       399 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls  447 (1269)
                      ..+ ++.+...+|.++ +|+.+.+.+|.+..+....|.+++ +++.|.+.
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            322 444444445544 455555555444444444444432 34444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=6e-18  Score=194.84  Aligned_cols=102  Identities=24%  Similarity=0.367  Sum_probs=81.2

Q ss_pred             CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCC-EEEcCCCccccccccccCCCCCccE
Q psy5670         460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT-ILNLASNKIQKVEAGTFDNNSNLVA  538 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~-~L~Ls~n~i~~~~~~~~~~~~~L~~  538 (1269)
                      .+++|++|++++|.++.++..+|.++.+|++|+|.+| +..|+..+|.++++|+ .+++.+ .++.+...+|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            3677888888877788887778888888888888776 7778888888888888 888877 777788888888888888


Q ss_pred             EEcccccccccC-CcCCCCCCCcEEE
Q psy5670         539 IRLDGNYLTDIG-GLFPKLPNLVWLN  563 (1269)
Q Consensus       539 L~L~~n~l~~l~-~~~~~l~~L~~L~  563 (1269)
                      |++++|.++.++ ..|.++++|+.+.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            888888888776 5788888888775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.1e-17  Score=192.77  Aligned_cols=285  Identities=18%  Similarity=0.196  Sum_probs=190.4

Q ss_pred             CCCCCEEEccCCCCcccchhhhcC-CCCCcEEEccCCCCC--CCCcccccCCCCCcEEEeeCCcccccCcccccC-----
Q psy5670         244 LSRLQELYLQGNILTFLADHALDG-LNSLTVLNLSVNNLV--NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV-----  315 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~-----  315 (1269)
                      +.+|++|.++++ +.......+.. +++|+.|||++|++.  ......+   +.++.+.+..+   .++...|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhccccccc
Confidence            467888888864 22222223444 788888998888877  3333222   22344444444   455666777     


Q ss_pred             ---CCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCC----ccccccccccc
Q psy5670         316 ---LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN----QIESIHRNTFA  388 (1269)
Q Consensus       316 ---l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~i~~~~f~  388 (1269)
                         +++|+.|+|.+ .+..  +...+|.+|++|+.++++.|.+..+.+..|.++.++..+.+..+    ....+...+|.
T Consensus        97 ~~g~~~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccCCCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence               88888888877 6665  66777888888888888888887887777877777776666553    23345555666


Q ss_pred             CCCCCc-EEEccCCc-ccccCcccccCCCCCCEEEccCCCCCccChhhh-cCCCCCcEEEccCCCCCCchh-hhcCCCCC
Q psy5670         389 SLSNLH-TLIMSNNK-LKRIESNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHLNGNKLTEIPK-VLRNLHSL  464 (1269)
Q Consensus       389 ~l~~L~-~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L  464 (1269)
                      ++..|+ .+.+.... +.......-....++..+.+.++ +.......+ ..+++|+.++|++|.++.+|. .|.++++|
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            666666 45444321 11111111112445666666654 222222222 237888888888888888875 57888888


Q ss_pred             cEEECCCCCCCccChhhhhccccCC-eeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEc
Q psy5670         465 KTLDLGDNLITEINNLSLNSLHQLA-GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL  541 (1269)
Q Consensus       465 ~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L  541 (1269)
                      ++|++.+| ++.+...+|.++.+|+ .+++.+ .+..|+..+|.+|++|+.|++++|+++.+...+|.++++|+.|+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88888887 8888888888888888 888887 778888888888888888888888888888888888888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=2.6e-17  Score=192.05  Aligned_cols=190  Identities=24%  Similarity=0.324  Sum_probs=109.6

Q ss_pred             ccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchh
Q psy5670          28 LRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGS  107 (1269)
Q Consensus        28 ~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~  107 (1269)
                      +...||..|.|...                   .+.|....+..+|.      ..+..++.|+|++|.    .+.+++..
T Consensus         8 ~~~~Cp~~C~C~~~-------------------~l~c~~~~l~~iP~------~~~~~l~~L~Ls~N~----l~~l~~~~   58 (361)
T 2xot_A            8 SVVSCPANCLCASN-------------------ILSCSKQQLPNVPQ------SLPSYTALLDLSHNN----LSRLRAEW   58 (361)
T ss_dssp             CCTTCCTTCEEETT-------------------EEECCSSCCSSCCS------SCCTTCSEEECCSSC----CCEECTTS
T ss_pred             cCCCCCCCCEECCC-------------------EEEeCCCCcCccCc------cCCCCCCEEECCCCC----CCccChhh
Confidence            34779999999732                   57888888877762      224557777777777    45566666


Q ss_pred             cc-CCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCccc
Q psy5670         108 FQ-TLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI  186 (1269)
Q Consensus       108 f~-~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~  186 (1269)
                      |. ++++|++|+|++|+|+.+++++|.++++|++|+|++|++      ..+.+..| .++++|++|+|++|.+..+++..
T Consensus        59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~  131 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL------HTLDEFLF-SDLQALEVLLLYNNHIVVVDRNA  131 (361)
T ss_dssp             SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC------CEECTTTT-TTCTTCCEEECCSSCCCEECTTT
T ss_pred             hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC------CcCCHHHh-CCCcCCCEEECCCCcccEECHHH
Confidence            66 777777777777777777666666666666666654432      13334445 55666666666666666555555


Q ss_pred             CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC--CCEEEccCCC
Q psy5670         187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR--LQELYLQGNI  256 (1269)
Q Consensus       187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~  256 (1269)
                      |..+++|++|+|++|+++.++...|..   ...+++|+.|+|++|.++.++...|..++.  |+.|++++|.
T Consensus       132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISRFPVELIKD---GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCGGGTC-------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             hCCcccCCEEECCCCcCCeeCHHHhcC---cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            555555555555555555554433321   112344555555555554444443444433  2344444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.4e-16  Score=170.33  Aligned_cols=179  Identities=26%  Similarity=0.347  Sum_probs=116.1

Q ss_pred             CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670         170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE  249 (1269)
Q Consensus       170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  249 (1269)
                      +.++.+++.+..+|...   .++|++|++++|+++.++...|..      +++|++|++++|.++.+++..|.++++|++
T Consensus        10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDE------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTT------CTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcc------cccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            45666666666666543   346777777777766655544433      456777777777777666666667777777


Q ss_pred             EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670         250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL  329 (1269)
Q Consensus       250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  329 (1269)
                      |++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|++++|.++++++..|..+++|+.|++++|.+
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            77777777766666666777777777777777777666666677777777777777766666666677777777776654


Q ss_pred             CccccCcccccCCCCccEEEcCCCCCcccCchhhcCC
Q psy5670         330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL  366 (1269)
Q Consensus       330 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  366 (1269)
                      ..         .+++|+.|+++.|.+++..+..++.+
T Consensus       161 ~~---------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          161 DC---------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CC---------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ec---------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            32         34556666666666665555444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.4e-16  Score=179.54  Aligned_cols=170  Identities=29%  Similarity=0.424  Sum_probs=91.1

Q ss_pred             CCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEEC
Q psy5670         390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL  469 (1269)
Q Consensus       390 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  469 (1269)
                      +++|+.|++++|.+..+.  .+..+++|+.|++++|.+.++.+  +..+++|++|++++|.++.+|. +..+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            344444444444444332  23444445555555555444433  4455555555555555555443 455555555555


Q ss_pred             CCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670         470 GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI  549 (1269)
Q Consensus       470 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  549 (1269)
                      ++|.++++  ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++|+++++.+  +..+++|+.|++++|.++++
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            55555554  2345555556666666655554  235556666666666666665544  55566666666666666655


Q ss_pred             CCcCCCCCCCcEEEccCCcCcc
Q psy5670         550 GGLFPKLPNLVWLNISENLLEW  571 (1269)
Q Consensus       550 ~~~~~~l~~L~~L~Ls~n~l~~  571 (1269)
                      +. +..+++|+.|++++|.+..
T Consensus       194 ~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          194 RA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GG-GTTCTTCSEEEEEEEEEEC
T ss_pred             hh-hccCCCCCEEECcCCcccC
Confidence            43 5556666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=4.3e-16  Score=190.15  Aligned_cols=188  Identities=23%  Similarity=0.302  Sum_probs=117.1

Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEE
Q psy5670         270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN  349 (1269)
Q Consensus       270 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  349 (1269)
                      +|+.|++++|.++++|...+   ++|+.|+|++|.++.++    ..+++|+.|++++|.+++  ++.  +.+  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE--LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch--hhc--CCCEEE
Confidence            56666666666666555432   45666666666666544    234566666666666654  322  333  566666


Q ss_pred             cCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCc
Q psy5670         350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY  429 (1269)
Q Consensus       350 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  429 (1269)
                      +++|.+++++.    .+++|+.|++++|.++.++.    .+++|+.|++++|++++++.  +.  ++|+.|+|++|.++.
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence            66666666544    35666666666666666553    34566667776666666443  33  667777777776665


Q ss_pred             cChhhhcCCCCC-------cEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670         430 IEENALKNSTSL-------QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH  486 (1269)
Q Consensus       430 ~~~~~~~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  486 (1269)
                      ++.  +..  +|       +.|+|++|.++.+|..+..+++|+.|++++|.+++..+..+..+.
T Consensus       195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          195 LPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            544  332  45       888888888888888777788888888888888877776665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=3.5e-16  Score=176.36  Aligned_cols=173  Identities=30%  Similarity=0.427  Sum_probs=119.0

Q ss_pred             CCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670         365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF  444 (1269)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  444 (1269)
                      .+++|+.|++++|.+..++.  +..+++|+.|++++|+++++.+  +..+++|+.|++++|.+..+.  .+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEE
Confidence            34555566666655555532  4555666666666666655543  556666666666666666543  26667777777


Q ss_pred             EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccc
Q psy5670         445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK  524 (1269)
Q Consensus       445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~  524 (1269)
                      ++++|.++.++ .+..+++|++|++++|.++++  ..+..+++|+.|++++|.+..+++  +..+++|+.|++++|++++
T Consensus       118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            77777777664 466777777777777777776  356777788888888888877665  7778888888888888877


Q ss_pred             ccccccCCCCCccEEEcccccccccC
Q psy5670         525 VEAGTFDNNSNLVAIRLDGNYLTDIG  550 (1269)
Q Consensus       525 ~~~~~~~~~~~L~~L~L~~n~l~~l~  550 (1269)
                      +.  .+..+++|+.|++++|.++..|
T Consensus       193 l~--~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 LR--ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred             Ch--hhccCCCCCEEECcCCcccCCc
Confidence            64  3777888888888888877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=1.3e-16  Score=185.32  Aligned_cols=116  Identities=18%  Similarity=0.360  Sum_probs=76.1

Q ss_pred             CCCCEEeCCC-CCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEe
Q psy5670         851 KELIILRLDD-NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITL  928 (1269)
Q Consensus       851 ~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l  928 (1269)
                      ++|+.|+|++ |.|+.+++.+|.+|++|+.|+|++|+|+++++..|.++++|+.|+|++|+|+.+++. |....|+.|+|
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l  110 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL  110 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence            3455555553 555555555555555555555555555555555555556666666666666665555 42223788999


Q ss_pred             eCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670         929 TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV  968 (1269)
Q Consensus       929 ~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~  968 (1269)
                      .+|+|.|+|++ .||..|++.....+ +...+.|..|...
T Consensus       111 ~~N~~~c~c~l-~~~~~~~~~~~~~l-~~~~~~C~~~~~l  148 (347)
T 2ifg_A          111 SGNPLHCSCAL-RWLQRWEEEGLGGV-PEQKLQCHGQGPL  148 (347)
T ss_dssp             CSSCCCCCGGG-HHHHHHHHTTCSSC-GGGCCCCSSSSCS
T ss_pred             eCCCccCCCcc-HHHHHHHHhCcccc-cccCCCCCCChHH
Confidence            99999999996 79999998765444 4578999988743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.66  E-value=8.7e-15  Score=172.89  Aligned_cols=338  Identities=14%  Similarity=0.250  Sum_probs=221.8

Q ss_pred             ccCCCchhccCCc-ccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCC
Q psy5670         100 QSSLSPGSFQTLI-DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNS  178 (1269)
Q Consensus       100 ~~~i~~~~f~~l~-~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~  178 (1269)
                      ...|++.+|.+++ .|+.+.+.. .++.|...+|.+|.+|+.+.+..+.   +.....+...+| .++.+|+.+.+..+ 
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~---p~~l~~Ig~~aF-~~c~~L~~i~~~~~-  124 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNK---PSCVKKIGRQAF-MFCSELTDIPILDS-  124 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGC---CCCCCEECTTTT-TTCTTCCBCGGGTT-
T ss_pred             eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCC---CCeeeEechhhc-hhcccceeeccCCc-
Confidence            4578889999985 599999985 4889999999999999999986432   223346778889 99999999888754 


Q ss_pred             CccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCc
Q psy5670         179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT  258 (1269)
Q Consensus       179 l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  258 (1269)
                      +..++..+|..+.+|+.+.+.. .+..+....|..      +..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ +.
T Consensus       125 ~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~------c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~  194 (394)
T 4gt6_A          125 VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSY------CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VT  194 (394)
T ss_dssp             CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CC
T ss_pred             cceehhhhhhhhcccccccccc-eeeeecccceec------ccccccccccce-eeEeccccccc-cceeEEEECCc-cc
Confidence            7888888899999999999875 355555555543      577888888754 77777777765 56888887653 45


Q ss_pred             ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCccc
Q psy5670         259 FLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT  338 (1269)
Q Consensus       259 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  338 (1269)
                      .+...+|.++.+|+...........+....+...........           .+.....+..+.+... +..  +...+
T Consensus       195 ~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~--i~~~a  260 (394)
T 4gt6_A          195 RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VAR--IETHA  260 (394)
T ss_dssp             EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEE--ECTTT
T ss_pred             ccccchhhhccccceecccccccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceE--cccce
Confidence            556667888888887777665544443333222211111110           1122233444444322 222  44566


Q ss_pred             ccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCC
Q psy5670         339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS  418 (1269)
Q Consensus       339 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  418 (1269)
                      |.++..|+.+.+..+ +..+....|.++..|+.+.+. +.++.++..+|.++.+|+.+.|.. .++.+...+|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence            777777777777543 345666667777777777775 456677777777777777777764 36667777777788888


Q ss_pred             EEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCC
Q psy5670         419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL  473 (1269)
Q Consensus       419 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  473 (1269)
                      .+.|.. .+..+...+|.+|++|+.+++.++...  -..+..+.+|+.+.+..+.
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC---------
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCC
Confidence            887764 367777778888888888887775421  1345566777777776553

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.66  E-value=8.6e-17  Score=163.00  Aligned_cols=97  Identities=19%  Similarity=0.350  Sum_probs=88.4

Q ss_pred             CCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670        1082 DKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus      1082 ~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
                      .+.|||||||+++|.  .|| .+|.+.|++  .|+++|++++++.+|+.|.++|.++|+.||..|+|+|++|+.|.||..
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~--~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFT-DFLYQSLRR--YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CcCCeEEEeccccCCCHHHH-HHHHHHHHH--CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            578999999999997  456 669999995  699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-CeEEEEEeC
Q psy5670        1160 EFKSAHHQVLRGK-KRLIVILLG 1181 (1269)
Q Consensus      1160 e~~~a~~~~~~~~-~~~i~i~~~ 1181 (1269)
                      |+..++...-+.+ ..||||+|+
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~  132 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYM  132 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEES
T ss_pred             HHHHHHHHHHhcCCeeeEEEEee
Confidence            9999998876544 889999994

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=6.5e-16  Score=162.49  Aligned_cols=172  Identities=26%  Similarity=0.408  Sum_probs=129.5

Q ss_pred             cEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcc
Q psy5670         560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL  637 (1269)
Q Consensus       560 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~  637 (1269)
                      +.+++++|+++.++. .+|..++.|++++|.|+.++.  .+..+.+|+.|+|++|+|+++.+..+.  .+|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            345555555555542 245567777777777777763  456788999999999999998876655  589999999999


Q ss_pred             cccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCccccc
Q psy5670         638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL  717 (1269)
Q Consensus       638 i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l  717 (1269)
                      |+++.+..|..+++|+.|+|++|+|+.++...+     ....+++.+++++|||.|||.+.|+..+-...      ..+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~------~~~~  158 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF-----NDLSALSHLAIGANPLYCDCNMQWLSDWVKSE------YKEP  158 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHHS------SCCC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh-----hcCccccEEEeCCCCeecCCcCHHHHHHHHhc------cCCC
Confidence            999999999999999999999999999888665     35578899999999999999999998764311      1123


Q ss_pred             CccccccccccCCCcccccccCCCcccccc
Q psy5670         718 DTVTCKLLYNRANPAILLKEAHSNQFLCEY  747 (1269)
Q Consensus       718 ~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~  747 (1269)
                      ....|..+.  ...+..+.+++...+.|.+
T Consensus       159 ~~~~C~~P~--~l~g~~l~~~~~~~~~~~~  186 (193)
T 2wfh_A          159 GIARCAGPG--EMADKLLLTTPSKKFTCAA  186 (193)
T ss_dssp             SCCBEEESG--GGTTCBTTTSCGGGCCC--
T ss_pred             CCcCcCCch--HHCCCCcccCChHHeeehh
Confidence            456787654  3455667777766666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.65  E-value=3.5e-15  Score=176.31  Aligned_cols=334  Identities=17%  Similarity=0.285  Sum_probs=188.8

Q ss_pred             CCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCC---CcccchhhhcCCCCCcEEEccCC
Q psy5670         203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNI---LTFLADHALDGLNSLTVLNLSVN  279 (1269)
Q Consensus       203 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n  279 (1269)
                      ++.+...+|.+     +...|+.+.+.. .++.+...+|.+|.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+
T Consensus        51 Vt~Ig~~aF~~-----~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~  124 (394)
T 4gt6_A           51 VSKIGDRVFCN-----YKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS  124 (394)
T ss_dssp             EEEECTTTTTT-----CCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred             eeEcCHhhccC-----CCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence            34455555543     113477777764 3777777777777777777776553   66666677777777777766554


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccC
Q psy5670         280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD  359 (1269)
Q Consensus       280 ~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  359 (1269)
                       ++.++...|..+.+|+.+.+.. .+..+....|..+.+|+.+.+..+ +..  +...+|.+ .+|+.+.+..+ +..+.
T Consensus       125 -~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~--I~~~aF~~-~~l~~i~ip~~-~~~i~  197 (394)
T 4gt6_A          125 -VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTA--IEERAFTG-TALTQIHIPAK-VTRIG  197 (394)
T ss_dssp             -CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTT-CCCSEEEECTT-CCEEC
T ss_pred             -cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeE--eccccccc-cceeEEEECCc-ccccc
Confidence             6666667777777777777753 355566666777777777777654 222  44555544 45666666543 34455


Q ss_pred             chhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCC
Q psy5670         360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST  439 (1269)
Q Consensus       360 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  439 (1269)
                      ...|..+.+++...........+....+........           ....+.....+..+.+. +.+..+...+|.++.
T Consensus       198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~  265 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIP-NGVARIETHAFDSCA  265 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECC-TTEEEECTTTTTTCS
T ss_pred             cchhhhccccceecccccccccccceeecccccccc-----------cccccccccccceEEcC-CcceEcccceeeecc
Confidence            555666666666665544433332222211110000           00011122233444443 234455556666667


Q ss_pred             CCcEEEccCCCCCCch-hhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcC
Q psy5670         440 SLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA  518 (1269)
Q Consensus       440 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  518 (1269)
                      .|+.+.+..+.. .+. .++.++++|+.+.+. +.++.+...+|.+|.+|+.++|..+ ++.|...+|.+|.+|+.+.+.
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            777666654332 232 345666667776664 3466666667777777777777643 666666777777777777775


Q ss_pred             CCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670         519 SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       519 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  567 (1269)
                      .+ ++.+...+|.+|++|+.+++.++....  ..+..+.+|+.+.+..+
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            43 666667777777777777776654321  23445556666655544

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.64  E-value=4.7e-17  Score=163.09  Aligned_cols=101  Identities=28%  Similarity=0.352  Sum_probs=88.7

Q ss_pred             cCCCCceeEEEEcccCCHH-HHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhh
Q psy5670        1079 DDRDKLFDAFVSYSSKDEA-FVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWC 1157 (1269)
Q Consensus      1079 ~~~~~~yDafvsy~~~d~~-~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~ 1157 (1269)
                      ...++.|||||||+++|+. || +.|.+.|++  .|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|.||
T Consensus        15 ~~~~~~~dvFISy~~~D~~~~~-~~L~~~L~~--~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc   91 (154)
T 3h16_A           15 LTSAPPHDIFISHAWEDKADFV-EALAHTLRA--AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWP   91 (154)
T ss_dssp             ---CCSEEEEEEEEGGGTTTTH-HHHHHHHHH--HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCC
T ss_pred             cCCCCCceEEEECcccChHHHH-HHHHHHHHH--CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHH
Confidence            3457899999999999985 55 559999995  6999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEeCC
Q psy5670        1158 RYEFKSAHHQVLRGKKRLIVILLGE 1182 (1269)
Q Consensus      1158 ~~e~~~a~~~~~~~~~~~i~i~~~~ 1182 (1269)
                      ..|++.|+.+..+.+.+||||+++.
T Consensus        92 ~~El~~~~~~~~~~~~~iiPV~~~v  116 (154)
T 3h16_A           92 QKELDGLFQLESSGRSRILPIWHKV  116 (154)
T ss_dssp             HHHHHHHTCCCTTSCCCEEEEEESC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecC
Confidence            9999999886544447899999943

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=161.99  Aligned_cols=153  Identities=26%  Similarity=0.377  Sum_probs=109.0

Q ss_pred             CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCcc-ccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCC
Q psy5670         170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATF-SFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ  248 (1269)
Q Consensus       170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  248 (1269)
                      +.+++++|.++++|...   .+.+++|+|++|+++.+.+. .|.      .+++|+.|+|++|.++.+++..|.++++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~------~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFK------KLPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGG------GCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhc------cCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            47788888888877643   23467777777777766432 232      256777777777777777766777777777


Q ss_pred             EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670         249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE  328 (1269)
Q Consensus       249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  328 (1269)
                      +|+|++|.++.+.+..|.++++|++|+|++|+++.+++..|..+++|++|+|++|.++++.+..|..+++|+.|++++|.
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            77777777777777777777777777777777777766667777777777777777777766677777777777777776


Q ss_pred             CCc
Q psy5670         329 LTE  331 (1269)
Q Consensus       329 l~~  331 (1269)
                      +..
T Consensus       165 l~c  167 (220)
T 2v70_A          165 FNC  167 (220)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=2.4e-15  Score=158.23  Aligned_cols=174  Identities=17%  Similarity=0.314  Sum_probs=127.1

Q ss_pred             cEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcc
Q psy5670         560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL  637 (1269)
Q Consensus       560 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~  637 (1269)
                      +.+++++|+++.++. .+|..++.|++++|+|+.++....+..+++|++|+|++|+|+++.+..+.  .+|++|+|++|+
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            344555555544432 23446667777777776665432355678899999999999988766554  589999999999


Q ss_pred             cccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCccccc
Q psy5670         638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL  717 (1269)
Q Consensus       638 i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l  717 (1269)
                      |+++.+..|.++++|+.|+|++|+|+++.+..+     ....+|+.+++++|+|.|+|.+.|+..+-...      ....
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~------~~~~  158 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-----EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK------SLNG  158 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-----TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHH------CCSG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-----hcCCCCCEEEeCCCCccCcCcchHHHHHHHHc------CCCC
Confidence            999999999999999999999999999877655     35568899999999999999999987643210      0112


Q ss_pred             CccccccccccCCCcccccccCCCcccccc
Q psy5670         718 DTVTCKLLYNRANPAILLKEAHSNQFLCEY  747 (1269)
Q Consensus       718 ~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~  747 (1269)
                      ....|..+.  ...+..+.++..++|.|.-
T Consensus       159 ~~~~C~~P~--~l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          159 GAARCGAPS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             GGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred             CCCCCCCCh--HHcCCChhhCcHhhcCcCC
Confidence            345676543  4566778888888887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=9.8e-16  Score=189.31  Aligned_cols=169  Identities=31%  Similarity=0.445  Sum_probs=73.0

Q ss_pred             CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q psy5670         343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL  422 (1269)
Q Consensus       343 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  422 (1269)
                      ++|+.|++++|.+..++  .+..+++|+.|+|++|.++.+++  +..+++|+.|+|++|.+.++.  .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence            33444444444433332  13334444444444444444332  334444444444444443322  2334444444444


Q ss_pred             cCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCC
Q psy5670         423 DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS  502 (1269)
Q Consensus       423 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~  502 (1269)
                      ++|.+..+.  .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.++.+  +..+++|+.|+|++|.+..++
T Consensus       117 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          117 EHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             TTSCCCCCG--GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             cCCCCCCCc--cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence            444444331  244444444444444444444 234444444444444444444433  444444444444444444432


Q ss_pred             hhhhcCCCCCCEEEcCCCcccc
Q psy5670         503 KGVFEKLSVLTILNLASNKIQK  524 (1269)
Q Consensus       503 ~~~f~~l~~L~~L~Ls~n~i~~  524 (1269)
                        .+..+++|+.|+|++|++.+
T Consensus       192 --~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          192 --ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             --GGTTCTTCSEEECCSEEEEC
T ss_pred             --HHccCCCCCEEEccCCcCcC
Confidence              24444445555555444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=5.6e-16  Score=171.79  Aligned_cols=170  Identities=19%  Similarity=0.264  Sum_probs=101.1

Q ss_pred             CCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcc
Q psy5670         463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD  542 (1269)
Q Consensus       463 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~  542 (1269)
                      ++..++++++.++++.  .+..+++|+.|++++|.+..++  .+..+++|+.|++++|+++++.+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444455555555443  2445555555555555555544  24555555555555555555443  4455555555555


Q ss_pred             cccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCC
Q psy5670         543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN  622 (1269)
Q Consensus       543 ~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~  622 (1269)
                      +|++++++..                       .. .+|++|++++|++++++.   +..+++|+.|++++|++++++..
T Consensus        94 ~N~l~~l~~~-----------------------~~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~~l  146 (263)
T 1xeu_A           94 RNRLKNLNGI-----------------------PS-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIVML  146 (263)
T ss_dssp             SSCCSCCTTC-----------------------CC-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCGGG
T ss_pred             CCccCCcCcc-----------------------cc-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCChHH
Confidence            5555544322                       12 455555555565555432   44566778888888888776543


Q ss_pred             cccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccc
Q psy5670         623 AIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ  667 (1269)
Q Consensus       623 ~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~  667 (1269)
                      .-.++|+.|+|++|+++++  ..+..+++|+.|++++|++...+.
T Consensus       147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            3446788888888888777  467788888888888888876543

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.62  E-value=2.4e-16  Score=157.56  Aligned_cols=97  Identities=24%  Similarity=0.410  Sum_probs=74.5

Q ss_pred             CCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670        1082 DKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus      1082 ~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
                      .+.|||||||+++|.  .|| .+|.+.|++  .|+++|++++|+.+|+.+.++|.++|+.||..|+|+|++|..|.||..
T Consensus         6 ~~~yDVFiSfrg~D~r~~Fv-~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            6 ATKYDVFLSFRGHDTRHNFI-SFLYKELVR--RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             -CCEEEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCeEEEECcCcccChHHH-HHHHHHHHH--CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            578999999999997  576 569999995  699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEeC
Q psy5670        1160 EFKSAHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus      1160 e~~~a~~~~~~~~~~~i~i~~~ 1181 (1269)
                      |+..++...-+.+.+||||+++
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~  104 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYG  104 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECS
T ss_pred             HHHHHHhhhccCCCEEEEEEec
Confidence            9999998775555899999994

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=1.9e-15  Score=186.72  Aligned_cols=153  Identities=28%  Similarity=0.414  Sum_probs=83.5

Q ss_pred             ccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCC
Q psy5670         339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS  418 (1269)
Q Consensus       339 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  418 (1269)
                      +..+++|+.|+|++|.+.++++  +..+++|+.|+|++|.+..++  .+..+++|+.|+|++|.+.++  ..+..+++|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  134 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  134 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence            3344444444444444444333  344444445555444444433  244555555555555555543  2345555566


Q ss_pred             EEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670         419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       419 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  498 (1269)
                      .|+|++|.+.++  ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++++.  .+..+++|+.|+|++|.+
T Consensus       135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEE
T ss_pred             EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcC
Confidence            666666655555  345566666666666666665554 566666666666666666652  356666677777777666


Q ss_pred             CCCC
Q psy5670         499 SNIS  502 (1269)
Q Consensus       499 ~~i~  502 (1269)
                      ...+
T Consensus       210 ~~~p  213 (605)
T 1m9s_A          210 LNKP  213 (605)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            5544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=7.9e-15  Score=159.00  Aligned_cols=151  Identities=28%  Similarity=0.395  Sum_probs=80.4

Q ss_pred             ccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccC
Q psy5670         345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN  424 (1269)
Q Consensus       345 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  424 (1269)
                      .+.++.+++.+..++...   .++|++|++++|.++.+.+..|..+++|+.|+|++|++..+.+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            344555555555554322   14555666666655555555555555555555555555555555555555555555555


Q ss_pred             CCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670         425 NELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       425 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  498 (1269)
                      |.+..+.+..|..+++|++|++++|.++.+|..+..+++|++|++++|.++++.+..|..+++|+.|+|++|.+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            55555555555555555555555555555555555555555555555555544443344444444444444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=1.4e-15  Score=168.61  Aligned_cols=147  Identities=23%  Similarity=0.444  Sum_probs=67.1

Q ss_pred             CCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeee
Q psy5670         413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR  492 (1269)
Q Consensus       413 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  492 (1269)
                      .+++|+.|++++|.+..+.  .+..+++|++|++++|.++.++. +..+++|++|++++|.++++....  . ++|+.|+
T Consensus        39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L~  112 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRLF  112 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEEE
T ss_pred             hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc--c-CcccEEE
Confidence            3334444444444443332  23344444444444444444443 444444444444444444433211  1 4444444


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670         493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE  570 (1269)
Q Consensus       493 Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  570 (1269)
                      +++|.++.++  .+..+++|+.|++++|+++++.  .+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.
T Consensus       113 L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred             ccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence            4444444443  2445555555555555555442  344455555555555555544 33444555555555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=1e-14  Score=154.17  Aligned_cols=151  Identities=18%  Similarity=0.260  Sum_probs=92.8

Q ss_pred             CCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q psy5670         341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL  420 (1269)
Q Consensus       341 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  420 (1269)
                      .+++|+.|++++|.+..++  .+..+++|++|++++|.++.++  .+..+++|++|++++|++++..+..+..+++|+.|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3455566666666655444  2555666666666666555443  35666777777777777766555566667777777


Q ss_pred             EccCCCCCccChhhhcCCCCCcEEEccCCC-CCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670         421 SLDNNELEYIEENALKNSTSLQDFHLNGNK-LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       421 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  498 (1269)
                      ++++|.+.+..+..+..+++|++|++++|. ++.+| .+..+++|++|++++|.++++.  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            777777766556666666677777777765 66665 4566666666666666666543  345555555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=6.9e-15  Score=155.52  Aligned_cols=154  Identities=16%  Similarity=0.136  Sum_probs=121.5

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ..+++|++|++++|.+..++.  +..+++|++|++++|.+....  .      +..+++|++|++++|.++...+..|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~--~------l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN--P------ISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG--G------GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch--h------hhcCCCCCEEEeECCccCcccChhhcC
Confidence            567889999999999988873  688899999999998766543  2      234678999999999888755567888


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCC-CCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN-LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  322 (1269)
                      +++|++|++++|.+++..+..+..+++|++|++++|. ++.++  .+..+++|++|++++|.++++.  .+..+++|+.|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L  186 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL  186 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence            9999999999999888777788889999999999987 77775  3677888888888888888765  46778888888


Q ss_pred             ECcCCCCCc
Q psy5670         323 DLSNNELTE  331 (1269)
Q Consensus       323 ~L~~n~l~~  331 (1269)
                      ++++|++.+
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.54  E-value=6.7e-13  Score=155.96  Aligned_cols=301  Identities=15%  Similarity=0.245  Sum_probs=157.3

Q ss_pred             hccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCccc
Q psy5670         107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI  186 (1269)
Q Consensus       107 ~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~  186 (1269)
                      .|....+|+.+.+.. .++.|+..+|.+|.+|+.+.|.       .....+...+| .++ +|+.+.+.. .+..++..+
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp-------~~v~~Ig~~aF-~~c-~l~~i~~~~-~l~~I~~~a  109 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVA-------STVTSIGDGAF-ADT-KLQSYTGME-RVKKFGDYV  109 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEEC-------TTCCEECTTTT-TTC-CCCEEEECT-TCCEECTTT
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeC-------CcceEechhhh-cCC-CCceEECCc-eeeEeccce
Confidence            466677788888864 4777888888888888888873       22346677777 776 677777764 377777777


Q ss_pred             CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhc
Q psy5670         187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD  266 (1269)
Q Consensus       187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  266 (1269)
                      |..+ +|+.+.+..+ +..+....|.+       .+|+.+.+.. .++.+...+|.++.+++.+.+..+.........+.
T Consensus       110 F~~~-~L~~i~lp~~-~~~i~~~~F~~-------~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~  179 (379)
T 4h09_A          110 FQGT-DLDDFEFPGA-TTEIGNYIFYN-------SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL  179 (379)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred             eccC-CcccccCCCc-ccccccccccc-------ceeeeeeccc-eeeccccchhcccccccccccccccceeeccccee
Confidence            7665 6888888654 44444445532       2466665553 36666666777777777777665443221111000


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCcc
Q psy5670         267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV  346 (1269)
Q Consensus       267 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  346 (1269)
                      .           +. .......|..+..+..+.+... ...+....+..+.+|+.+.+..+ +..  +...+|.++..|+
T Consensus       180 ~-----------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~--i~~~~f~~~~~L~  243 (379)
T 4h09_A          180 Y-----------NK-NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTT--LGDGAFYGMKALD  243 (379)
T ss_dssp             E-----------ET-TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCE--ECTTTTTTCSSCC
T ss_pred             c-----------cc-ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeE--EccccccCCccce
Confidence            0           00 0000111222333333333221 22222333444444444444332 111  2334444445555


Q ss_pred             EEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCC
Q psy5670         347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE  426 (1269)
Q Consensus       347 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  426 (1269)
                      .+.+..+ ++.+....|.++.+|+.+.+.. .+..++..+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|.. .
T Consensus       244 ~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~  320 (379)
T 4h09_A          244 EIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-A  320 (379)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-T
T ss_pred             EEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-c
Confidence            5554433 4444444455555555555432 24444444555555555555555555555555555555555555543 2


Q ss_pred             CCccChhhhcCCCCCcEEEcc
Q psy5670         427 LEYIEENALKNSTSLQDFHLN  447 (1269)
Q Consensus       427 i~~~~~~~~~~l~~L~~L~Ls  447 (1269)
                      +..+...+|.+|++|+.+.+.
T Consensus       321 l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          321 LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccEEHHHHhhCCCCCCEEEEC
Confidence            444555555555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.50  E-value=1.2e-12  Score=153.78  Aligned_cols=337  Identities=14%  Similarity=0.210  Sum_probs=160.2

Q ss_pred             ccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCcccc
Q psy5670         132 FRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF  211 (1269)
Q Consensus       132 f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  211 (1269)
                      |....+|+.+.+       +.....+...+| .++.+|+.++|+.+ ++.|+..+|.++ +|+.+.+.. .+..+...+|
T Consensus        42 ~~~~~~i~~v~i-------p~~vt~Ig~~aF-~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF  110 (379)
T 4h09_A           42 YKDRDRISEVRV-------NSGITSIGEANF-NSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF  110 (379)
T ss_dssp             GGGGGGCSEEEE-------CTTEEEECTTTT-TTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred             cccccCCEEEEe-------CCCccChHHHHh-hCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence            556677777777       333456677777 77777777777643 677777777766 566665543 2444444444


Q ss_pred             CCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccC
Q psy5670         212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQ  291 (1269)
Q Consensus       212 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~  291 (1269)
                      ..       .+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.++..++.+.+..+.........+. 
T Consensus       111 ~~-------~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-  179 (379)
T 4h09_A          111 QG-------TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-  179 (379)
T ss_dssp             TT-------CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-
T ss_pred             cc-------CCcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeeccccee-
Confidence            32       24555555432 344444444443 344433332 23333334444444444444433221111100000 


Q ss_pred             CCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcE
Q psy5670         292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV  371 (1269)
Q Consensus       292 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  371 (1269)
                              .  +. .......+.....+..+.+......   +....+..+.+|+.+.+..+                  
T Consensus       180 --------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~f~~~~~l~~i~~~~~------------------  227 (379)
T 4h09_A          180 --------Y--NK-NKTILESYPAAKTGTEFTIPSTVKT---VTAYGFSYGKNLKKITITSG------------------  227 (379)
T ss_dssp             --------E--ET-TSSEEEECCTTCCCSEEECCTTCCE---ECTTTTTTCSSCSEEECCTT------------------
T ss_pred             --------c--cc-ccceeccccccccccccccccceeE---Eeecccccccccceeeeccc------------------
Confidence                    0  00 0000111233334444443332111   22333444444554444322                  


Q ss_pred             EEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCC
Q psy5670         372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL  451 (1269)
Q Consensus       372 L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  451 (1269)
                             +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..+...+|.+|++|+.+.+.++.+
T Consensus       228 -------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i  298 (379)
T 4h09_A          228 -------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI  298 (379)
T ss_dssp             -------CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC
T ss_pred             -------eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccccccc
Confidence                   33344444444445555444332 4444444455555555555542 24444455555555555555555555


Q ss_pred             CCchh-hhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccccccccc
Q psy5670         452 TEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF  530 (1269)
Q Consensus       452 ~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~  530 (1269)
                      +.++. +|.++.+|+.+.|..+ ++.+...+|.+|.+|+++.+..+ +..|...+|.++..++ +..   .+..+....|
T Consensus       299 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~~---~~~~~~~~~f  372 (379)
T 4h09_A          299 ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK-YPT---WLSKGNNGDY  372 (379)
T ss_dssp             CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC-CCT---TCEECTTSCE
T ss_pred             ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc-Ccc---ccccCceeeh
Confidence            55543 4555566666666433 55666667777777777777543 6667777777765433 211   1223333455


Q ss_pred             CCCCCcc
Q psy5670         531 DNNSNLV  537 (1269)
Q Consensus       531 ~~~~~L~  537 (1269)
                      ..+.+||
T Consensus       373 ~~~~~Lk  379 (379)
T 4h09_A          373 GIFTKIK  379 (379)
T ss_dssp             EC-----
T ss_pred             hhhhhcC
Confidence            5555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=7.2e-16  Score=189.42  Aligned_cols=120  Identities=26%  Similarity=0.358  Sum_probs=75.9

Q ss_pred             CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670         440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS  519 (1269)
Q Consensus       440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  519 (1269)
                      .|+.|++++|.++.+|. +..+++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.+|  .|.++++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence            46666666666666665 666666666666666666443 35666666666666666666655  366666677777777


Q ss_pred             Ccccccc-ccccCCCCCccEEEcccccccccCCcCC----CCCCCcEEE
Q psy5670         520 NKIQKVE-AGTFDNNSNLVAIRLDGNYLTDIGGLFP----KLPNLVWLN  563 (1269)
Q Consensus       520 n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~l~~~~~----~l~~L~~L~  563 (1269)
                      |+++++. +..+..+++|+.|+|++|.++++|+...    .+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            7666665 5666666667777777666666554322    245555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=1.4e-15  Score=186.85  Aligned_cols=204  Identities=19%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             cCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-------------CcccCchhhcCCCCCcEEE-ccCCcc
Q psy5670         314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-------------MNKLDSSIFKDLYRLQVLH-LENNQI  379 (1269)
Q Consensus       314 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l  379 (1269)
                      ..+++|+.|+|++|.+..  + +..++.+++|+.|++++|.             ..+..+..+..+++|+.|+ ++.|.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~--L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV--L-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH--H-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHHh--h-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            445666666666666653  2 4555666666666665442             2222233333334444443 222221


Q ss_pred             cccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhc
Q psy5670         380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLR  459 (1269)
Q Consensus       380 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~  459 (1269)
                      .           +|+.+.+++|.++.+.+      ..|+.|+|++|.+++++.  ++.+++|+.|+|++|.++.+|..+.
T Consensus       423 ~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~  483 (567)
T 1dce_A          423 D-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA  483 (567)
T ss_dssp             H-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred             c-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhh
Confidence            1           12222233334433322      248889999998888753  8888999999999999999998889


Q ss_pred             CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCC-hhhhcCCCCCCEEEcCCCccccccccc---cCCCCC
Q psy5670         460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVFEKLSVLTILNLASNKIQKVEAGT---FDNNSN  535 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~---~~~~~~  535 (1269)
                      .+++|++|+|++|.+++++  .+..+++|+.|+|++|.++.+. +..|..+++|+.|+|++|+++++++..   +..+++
T Consensus       484 ~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          484 ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            9999999999999998864  6888999999999999998875 566888999999999999998876532   234778


Q ss_pred             ccEEEc
Q psy5670         536 LVAIRL  541 (1269)
Q Consensus       536 L~~L~L  541 (1269)
                      |+.|++
T Consensus       562 L~~L~l  567 (567)
T 1dce_A          562 VSSILT  567 (567)
T ss_dssp             CSEEEC
T ss_pred             cCccCC
Confidence            888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=5.8e-14  Score=144.24  Aligned_cols=134  Identities=25%  Similarity=0.209  Sum_probs=119.7

Q ss_pred             CCCCCCCCcEEEecCCCCC--CcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCc
Q psy5670         798 PPRIPMDATELYLDGNRIP--VVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLE  875 (1269)
Q Consensus       798 p~~~p~~~~~l~l~~n~i~--~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~  875 (1269)
                      +...|..+++|++++|.++  .++. .|.++++|+.|++++|.|+.+  ..|..+++|+.|+|++|+++...+..|.+++
T Consensus        19 ~~~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           19 RNRTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            4556678899999999998  7764 478899999999999999998  7899999999999999999997777888899


Q ss_pred             ccCeeecccccCcccCh-hhhhcCcccceEeccCccceeeec---c-c-ccCCccEEEeeCCccc
Q psy5670         876 NLRELYLQYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAV---W-H-LSSQIQSITLTSNPWS  934 (1269)
Q Consensus       876 ~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~-~-~~~~l~~l~l~~Np~~  934 (1269)
                      +|++|+|++|+|+.++. ..|..+++|++|+|++|+++.+++   . + .+++|+.|++++|+..
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999999875 788999999999999999999988   3 4 7899999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=3.7e-13  Score=138.68  Aligned_cols=117  Identities=30%  Similarity=0.543  Sum_probs=65.5

Q ss_pred             cCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccc
Q psy5670         766 EMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK  845 (1269)
Q Consensus       766 ~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~  845 (1269)
                      ...||..|+|.      ...++|++.+++.+ |..+|..++.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++.
T Consensus         3 ~~~CP~~C~C~------~~~l~~~~n~l~~i-P~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A            3 SAGCPSQCSCD------QTLVNCQNIRLASV-PAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             CCSSCTTSEEC------SSEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCCCCEEC------CcEEEeCCCCCCcc-CCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh
Confidence            35799999993      35677777777766 666666556666655555555555555555555555444444444444


Q ss_pred             cccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcc
Q psy5670         846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY  889 (1269)
Q Consensus       846 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  889 (1269)
                      .|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|.+..
T Consensus        76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            44444444444444444444444444444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2.4e-13  Score=140.71  Aligned_cols=128  Identities=21%  Similarity=0.308  Sum_probs=109.1

Q ss_pred             CCCcEEEecCCCCCCcCCCcCCCCC-CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeee
Q psy5670         803 MDATELYLDGNRIPVVGSHSFIGRK-KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY  881 (1269)
Q Consensus       803 ~~~~~l~l~~n~i~~l~~~~f~~~~-~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~  881 (1269)
                      ..+++|++++|.++.++.  +..+. +|+.|++++|+|+.+  ..|..+++|+.|+|++|+|+.+++..|.++++|++|+
T Consensus        19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            456889999999998853  44444 899999999999988  6788999999999999999999888889999999999


Q ss_pred             cccccCcccCh-hhhhcCcccceEeccCccceeeecc----c-ccCCccEEEeeCCccc
Q psy5670         882 LQYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW----H-LSSQIQSITLTSNPWS  934 (1269)
Q Consensus       882 L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~----~-~~~~l~~l~l~~Np~~  934 (1269)
                      |++|+|+.++. ..|..+++|+.|+|++|.++.++..    + .+++|+.|++++|+..
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999988886 5788899999999999999988774    3 6788999999888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=6.4e-13  Score=136.40  Aligned_cols=129  Identities=24%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             CCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEEC
Q psy5670         392 NLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLDL  469 (1269)
Q Consensus       392 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L  469 (1269)
                      +|+.|++++|.++ +..+..+..+++|+.|++++|.+..+  ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            3444444444443 12222233444444444444444433  233444444444444444443 3333333444444444


Q ss_pred             CCCCCCccCh-hhhhccccCCeeeccCCcCCCCCh---hhhcCCCCCCEEEcCCCcc
Q psy5670         470 GDNLITEINN-LSLNSLHQLAGLRLTENNISNISK---GVFEKLSVLTILNLASNKI  522 (1269)
Q Consensus       470 s~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~---~~f~~l~~L~~L~Ls~n~i  522 (1269)
                      ++|.++++.. ..+..+++|+.|++++|.+..++.   ..|..+++|+.|++++|.+
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            4444443321 233333334444444443333332   2333444444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=1.1e-13  Score=175.61  Aligned_cols=190  Identities=19%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccc
Q psy5670         445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK  524 (1269)
Q Consensus       445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~  524 (1269)
                      ++..|.+...|..+..++.|+.|+|++|.+..++.. +..+++|+.|+|++|.++.+|. .|.++++|++|+|++|+|+.
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSS
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCc
Confidence            344455555556677778888888888888766554 3477888888888888887774 46788888888888888885


Q ss_pred             ccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccc
Q psy5670         525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL  604 (1269)
Q Consensus       525 ~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~  604 (1269)
                      + +..|..+++|+.|+|++|.++.+|..|..+++|+.|+|++|.++...    |..+                 ... ..
T Consensus       285 l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~----p~~~-----------------~~~-~~  341 (727)
T 4b8c_D          285 L-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF----LKIL-----------------TEK-SV  341 (727)
T ss_dssp             C-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH----HHHH-----------------HHH-HH
T ss_pred             c-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC----hHHH-----------------hhc-ch
Confidence            5 56677888888888888888888877888888888888888776321    1100                 000 01


Q ss_pred             cccEEEcCCCccccccCCcccCCccEEEccCc--------ccccccCCccCCCCCccEEEcCCCCcc
Q psy5670         605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNN--------LISKVQPYTFFMKPNLTRVDLVGNRLK  663 (1269)
Q Consensus       605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N--------~i~~~~~~~f~~~~~L~~LdLs~N~l~  663 (1269)
                      .+..++|++|.+++    .+|..|+.|++++|        .+.+..+..+..+..+....++.|-+.
T Consensus       342 ~~~~l~l~~N~l~~----~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          342 TGLIFYLRDNRPEI----PLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHCCCCC----CCCCC-----------------------------------------CCC
T ss_pred             hhhHHhhccCcccC----cCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            12235666666654    34456666777666        233333334444555555555665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=2.3e-12  Score=133.45  Aligned_cols=107  Identities=35%  Similarity=0.520  Sum_probs=45.7

Q ss_pred             ccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeC
Q psy5670         223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN  302 (1269)
Q Consensus       223 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~  302 (1269)
                      |++|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  109 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT  109 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence            33334444433333333334444444444444444444333344444444444444444444444444444444444444


Q ss_pred             CcccccCcccccCCCCCCEEECcCCCC
Q psy5670         303 NSINVLAPGIFNVLTQLIVLDLSNNEL  329 (1269)
Q Consensus       303 n~l~~~~~~~~~~l~~L~~L~L~~n~l  329 (1269)
                      |.++++++..|..+++|+.|++++|.+
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          110 NQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcceEeCHHHhcCCcccCEEEecCCCe
Confidence            444444443344444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.39  E-value=6.1e-13  Score=128.82  Aligned_cols=49  Identities=22%  Similarity=0.612  Sum_probs=38.3

Q ss_pred             cEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670         924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR  974 (1269)
Q Consensus       924 ~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~  974 (1269)
                      +.|+|++|||.|||++ .||+.|++.....+ ...+++|.+|...+|..+.
T Consensus        58 ~~L~L~~NP~~CdC~l-~~l~~wl~~~~~~~-~~~~~~C~~P~~l~g~~l~  106 (130)
T 3rfe_A           58 RTAHLGANPWRCDCRL-VPLRAWLAGRPERA-PYRDLRCVAPPALRGRLLP  106 (130)
T ss_dssp             CEEECCSSCCBCSGGG-HHHHHHHHTSSCSG-GGTTCBCCBSTTTTTCBGG
T ss_pred             CEEEecCCCeeccCcc-HHHHHHHHhCcccc-cccCcEeCcChHHcCCCcc
Confidence            4478889999999996 79999998765444 3568999999998774443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=1.7e-13  Score=173.92  Aligned_cols=154  Identities=22%  Similarity=0.219  Sum_probs=104.2

Q ss_pred             cCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcC
Q psy5670         358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN  437 (1269)
Q Consensus       358 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  437 (1269)
                      +++..|..++.|+.|+|++|.+..++...+ .+++|+.|+|++|.++.+ +..+.++++|+.|+|++|.++.+ |..|++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL-PAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC-CSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc-ChhhcC
Confidence            445567777888888888888887776554 678888888888888744 45678888888888888888855 556788


Q ss_pred             CCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcccc-CCeeeccCCcCCCCChhhhcCCCCCCEEE
Q psy5670         438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ-LAGLRLTENNISNISKGVFEKLSVLTILN  516 (1269)
Q Consensus       438 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~  516 (1269)
                      +++|++|+|++|.++.+|..|..+++|++|+|++|.+++..+..+..+.. +..++|++|.+....      ...|+.|+
T Consensus       292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~------p~~l~~l~  365 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL------PHERRFIE  365 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCC-----
T ss_pred             CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC------ccccceeE
Confidence            88888888888888888888888888889999988888877776654432 234677777773222      23456666


Q ss_pred             cCCC
Q psy5670         517 LASN  520 (1269)
Q Consensus       517 Ls~n  520 (1269)
                      ++.|
T Consensus       366 l~~n  369 (727)
T 4b8c_D          366 INTD  369 (727)
T ss_dssp             ----
T ss_pred             eecc
Confidence            6665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.7e-12  Score=133.26  Aligned_cols=118  Identities=28%  Similarity=0.501  Sum_probs=110.4

Q ss_pred             CCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccc
Q psy5670         768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTF  847 (1269)
Q Consensus       768 ~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f  847 (1269)
                      .||..|.|.      ...++|++.+++.+ |..++..++.|+|++|.|+.+++..|.++++|+.|+|++|+|+.+++..|
T Consensus         2 ~CP~~C~C~------~~~l~~s~n~l~~i-p~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A            2 ACPSQCSCS------GTTVDCSGKSLASV-PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             CCC-CCEEE------TTEEECTTSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             cCcCcCCcC------CCEEEeCCCCcCcc-CccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence            599999994      35799999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccCh
Q psy5670         848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN  892 (1269)
Q Consensus       848 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~  892 (1269)
                      .++++|++|+|++|+|+.+++..|.++++|++|+|++|.++...+
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999999999999999999999999999999999999999886653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=1.5e-12  Score=130.53  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=56.1

Q ss_pred             CCCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEE
Q psy5670         391 SNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLD  468 (1269)
Q Consensus       391 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~  468 (1269)
                      ++|+.|++++|.++ +..+..+..+++|+.|++++|.+.++  ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            33444444444444 22223334444444444444444444  334444444444444444444 444444444455555


Q ss_pred             CCCCCCCccC-hhhhhccccCCeeeccCCcCCCCCh---hhhcCCCCCCEEEcC
Q psy5670         469 LGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISK---GVFEKLSVLTILNLA  518 (1269)
Q Consensus       469 Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~---~~f~~l~~L~~L~Ls  518 (1269)
                      +++|.++++. +..+..+++|+.|++++|.++.++.   ..|..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555444432 1334444444444444444444433   334444555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.35  E-value=2.6e-12  Score=128.86  Aligned_cols=126  Identities=26%  Similarity=0.330  Sum_probs=96.7

Q ss_pred             CCCcEEEccCCccc--ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670         367 YRLQVLHLENNQIE--SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF  444 (1269)
Q Consensus       367 ~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  444 (1269)
                      ++|+.|++++|.++  .++ ..+..+++|+.|++++|.++++  ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            46677777777666  343 3556677777777777777766  557777888888888888887667777778888888


Q ss_pred             EccCCCCCCch--hhhcCCCCCcEEECCCCCCCccCh---hhhhccccCCeeeccC
Q psy5670         445 HLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEINN---LSLNSLHQLAGLRLTE  495 (1269)
Q Consensus       445 ~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~  495 (1269)
                      ++++|.++.+|  ..+..+++|++|++++|.++++++   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888888765  678888889999999998888776   5778888898888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=3.8e-12  Score=131.61  Aligned_cols=131  Identities=23%  Similarity=0.304  Sum_probs=64.9

Q ss_pred             CCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670         365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF  444 (1269)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  444 (1269)
                      ++.+|++|++++|.++.++. .....++|+.|++++|.++++  ..+..+++|+.|++++|.+.++++..+..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            34444555555554444421 111122555555555555544  244555555555555555555544444555556666


Q ss_pred             EccCCCCCCchh--hhcCCCCCcEEECCCCCCCccChh---hhhccccCCeeeccCCcC
Q psy5670         445 HLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNL---SLNSLHQLAGLRLTENNI  498 (1269)
Q Consensus       445 ~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l  498 (1269)
                      ++++|.++.+|.  .+..+++|++|++++|.++.++..   .+..+++|+.|++++|.+
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            666665555554  455555555555555555544332   244444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=1.7e-13  Score=144.96  Aligned_cols=114  Identities=25%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             cccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCC
Q psy5670         410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA  489 (1269)
Q Consensus       410 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  489 (1269)
                      .+..+++|++|++++|.+.+++  .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+++++  .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence            5566666777777777666654  566667777777777777777766666677777777777777653  466777777


Q ss_pred             eeeccCCcCCCCCh-hhhcCCCCCCEEEcCCCccccccc
Q psy5670         490 GLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKVEA  527 (1269)
Q Consensus       490 ~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~i~~~~~  527 (1269)
                      .|++++|.+..++. ..+..+++|++|++++|++.+..+
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            77777777766554 456777777777777777765533

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=1.4e-12  Score=137.81  Aligned_cols=130  Identities=26%  Similarity=0.398  Sum_probs=113.0

Q ss_pred             CCcEEEecCC--CCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeee
Q psy5670         804 DATELYLDGN--RIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY  881 (1269)
Q Consensus       804 ~~~~l~l~~n--~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~  881 (1269)
                      ++....+++.  .++.++. .|.++++|++|++++|+|+.++  .|.++++|+.|+|++|.++.++. .+..+++|++|+
T Consensus        24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~   99 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELW   99 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEE
T ss_pred             chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEE
Confidence            4456666653  5666664 7888999999999999999986  89999999999999999998875 677789999999


Q ss_pred             cccccCcccChhhhhcCcccceEeccCccceeeec-c-c-ccCCccEEEeeCCcccccCCc
Q psy5670         882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV-W-H-LSSQIQSITLTSNPWSCDCDF  939 (1269)
Q Consensus       882 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~-~-~~~~l~~l~l~~Np~~C~C~~  939 (1269)
                      |++|+|+.++  .|..+++|++|+|++|+++.++. . + .+++|+.|++++|++.|.|+.
T Consensus       100 L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          100 ISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999999986  58899999999999999999876 3 5 789999999999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=1.5e-10  Score=134.05  Aligned_cols=113  Identities=21%  Similarity=0.433  Sum_probs=94.0

Q ss_pred             EECCCC-CcccccccccccccccccEEEcCC-CccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCC
Q psy5670         584 LDIHGN-QISELGNYFEIESQLRLTYFDASS-NKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG  659 (1269)
Q Consensus       584 L~Ls~n-~l~~~~~~~~l~~~~~L~~LdLs~-N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~  659 (1269)
                      ++++++ .++.+|.   +..+.+|+.|+|++ |+|+++++..+.  .+|+.|+|++|+|+++.|..|.++++|+.|||++
T Consensus        13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            466665 6666665   45667899999996 999988865554  5899999999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcc
Q psy5670         660 NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSV  705 (1269)
Q Consensus       660 N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~  705 (1269)
                      |+|++++...+..      ..|+.|++.+|++.|+|.+.|+..+..
T Consensus        90 N~l~~~~~~~~~~------~~L~~l~l~~N~~~c~c~l~~~~~~~~  129 (347)
T 2ifg_A           90 NALESLSWKTVQG------LSLQELVLSGNPLHCSCALRWLQRWEE  129 (347)
T ss_dssp             SCCSCCCSTTTCS------CCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             CccceeCHHHccc------CCceEEEeeCCCccCCCccHHHHHHHH
Confidence            9999998876632      238899999999999999999987643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=3.6e-11  Score=139.65  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             CCCcEEEccCCcccccCcccc-cCCCCCCEEEccCCCCCccChhhh-----cCCCCCcEEEccCCCCCC-----chhhhc
Q psy5670         391 SNLHTLIMSNNKLKRIESNSL-DSLTALSVLSLDNNELEYIEENAL-----KNSTSLQDFHLNGNKLTE-----IPKVLR  459 (1269)
Q Consensus       391 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~  459 (1269)
                      ++|+.|+|++|.++......+ ..+++|+.|+|++|.+.......+     ...++|++|+|++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            355555555555443322111 123345555555555544333222     234556666666666542     333445


Q ss_pred             CCCCCcEEECCCCCCCccC----hhhhhccccCCeeeccCCcCCCCChh----hhcCCCCCCEEEcCCCccccc
Q psy5670         460 NLHSLKTLDLGDNLITEIN----NLSLNSLHQLAGLRLTENNISNISKG----VFEKLSVLTILNLASNKIQKV  525 (1269)
Q Consensus       460 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~  525 (1269)
                      .+++|++|+|++|.+++..    ...+...++|+.|+|++|.++.....    .+...++|++|+|++|.|+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            5566666666666665433    22333444555555555555432211    223345555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=6.1e-11  Score=137.76  Aligned_cols=109  Identities=24%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             CCcEEEccCCcccccccccc-----cCCCCCcEEEccCCcccccCcc----cccCCCCCCEEEccCCCCCccC----hhh
Q psy5670         368 RLQVLHLENNQIESIHRNTF-----ASLSNLHTLIMSNNKLKRIESN----SLDSLTALSVLSLDNNELEYIE----ENA  434 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~----~~~  434 (1269)
                      +|++|+|++|.++......+     ...++|++|+|++|.++.....    .+..+++|++|+|++|.+....    ...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            44555555554443222222     1234455555555544432211    1233444444444444443322    122


Q ss_pred             hcCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCc
Q psy5670         435 LKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      +..+++|++|+|++|.++.     ++..+...++|++|+|++|.|++
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            3333444444444444442     12223333444444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=3.9e-08  Score=112.98  Aligned_cols=112  Identities=20%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhh--ccccCCeeeccC--CcC-CC-----CC
Q psy5670         433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN--SLHQLAGLRLTE--NNI-SN-----IS  502 (1269)
Q Consensus       433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~--n~l-~~-----i~  502 (1269)
                      ..+..+++|+.|+|++|.-..++. + .+++|+.|+|..|.+.......+.  .+++|+.|+|+.  |.. ..     +.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            345566677777776663223333 2 256777777776666543333333  566677776642  111 11     11


Q ss_pred             hhhh--cCCCCCCEEEcCCCcccccccccc---CCCCCccEEEccccccc
Q psy5670         503 KGVF--EKLSVLTILNLASNKIQKVEAGTF---DNNSNLVAIRLDGNYLT  547 (1269)
Q Consensus       503 ~~~f--~~l~~L~~L~Ls~n~i~~~~~~~~---~~~~~L~~L~L~~n~l~  547 (1269)
                      . .+  ..+++|+.|+|.+|.+.......+   ..+++|+.|+|+.|.++
T Consensus       244 ~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          244 P-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             G-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             H-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            1 11  235566666666666543211111   12345555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.49  E-value=1.8e-07  Score=90.28  Aligned_cols=102  Identities=24%  Similarity=0.392  Sum_probs=63.7

Q ss_pred             EEEcCCCccc--cccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceE
Q psy5670         608 YFDASSNKLT--ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFY  685 (1269)
Q Consensus       608 ~LdLs~N~l~--~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~  685 (1269)
                      .++.++++++  .++. .+|.+|+.|+|++|+|+.+.+..|..+++                             |+.++
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~-----------------------------L~~L~   61 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPA-----------------------------LRTAH   61 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTT-----------------------------CCEEE
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccc-----------------------------cCEEE
Confidence            5666666665  4442 35555666666666555555555544444                             45567


Q ss_pred             ecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccc
Q psy5670         686 IGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC  745 (1269)
Q Consensus       686 l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~  745 (1269)
                      +++|||.|||.+.||..+-..    .........+.|..+.  ...+..+.++...+|.|
T Consensus        62 L~~NP~~CdC~l~~l~~wl~~----~~~~~~~~~~~C~~P~--~l~g~~l~~l~~~~l~c  115 (130)
T 3rfe_A           62 LGANPWRCDCRLVPLRAWLAG----RPERAPYRDLRCVAPP--ALRGRLLPYLAEDELRA  115 (130)
T ss_dssp             CCSSCCBCSGGGHHHHHHHHT----SSCSGGGTTCBCCBST--TTTTCBGGGCCHHHHHH
T ss_pred             ecCCCeeccCccHHHHHHHHh----CcccccccCcEeCcCh--HHcCCCcccCCHHHhhC
Confidence            778999999999999876431    1111234578897654  35667788887777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=2.1e-07  Score=106.97  Aligned_cols=82  Identities=15%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             CCCCcEEEccCCCCCC-chhhh---cCCCCCcEEECCCCCCCccChh----hhhccccCCeeeccCCcCCCCChhhhcC-
Q psy5670         438 STSLQDFHLNGNKLTE-IPKVL---RNLHSLKTLDLGDNLITEINNL----SLNSLHQLAGLRLTENNISNISKGVFEK-  508 (1269)
Q Consensus       438 l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~i~~~~f~~-  508 (1269)
                      +++|+.|+|.+|.+.. .+..+   ..+++|++|+|+.|.+++....    .+..+++|+.|+|+.|.++.-....+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4455555555554432 11111   1345566666666655543221    2234556666666666554322222222 


Q ss_pred             CCCCCEEEcCCCc
Q psy5670         509 LSVLTILNLASNK  521 (1269)
Q Consensus       509 l~~L~~L~Ls~n~  521 (1269)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            1  2446666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.05  E-value=2.1e-06  Score=88.84  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=8.2

Q ss_pred             hcCCCCCcEEECCCCCCC
Q psy5670         458 LRNLHSLKTLDLGDNLIT  475 (1269)
Q Consensus       458 l~~l~~L~~L~Ls~n~i~  475 (1269)
                      +...++|++|+|++|.+.
T Consensus        61 L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HHhCCCcCEEECcCCCCC
Confidence            333444444444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=3.4e-06  Score=87.20  Aligned_cols=88  Identities=22%  Similarity=0.336  Sum_probs=40.2

Q ss_pred             cCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCccCh----hhhhccccCCeeec--cCCcCCCCCh-
Q psy5670         436 KNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRL--TENNISNISK-  503 (1269)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L--s~n~l~~i~~-  503 (1269)
                      ...++|++|+|++|.+..     +...+...++|++|+|++|.|++...    ..+...+.|++|+|  ++|.++.-.. 
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            334455555555555442     22334444555555555555554321    22233344555555  4444432211 


Q ss_pred             ---hhhcCCCCCCEEEcCCCccc
Q psy5670         504 ---GVFEKLSVLTILNLASNKIQ  523 (1269)
Q Consensus       504 ---~~f~~l~~L~~L~Ls~n~i~  523 (1269)
                         ..+...++|++|+|++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence               12334455666666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=1.4e-05  Score=86.86  Aligned_cols=65  Identities=28%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             cCCCCCCEEeCCCCCCcccCc--ccccCCcccCeeecccccCcccCh-hhhhcCcccceEeccCcccee
Q psy5670         848 NGLKELIILRLDDNRLTEIRG--YEFERLENLRELYLQYNKIIYISN-RTFLSLTHLKVLQLDHNRITS  913 (1269)
Q Consensus       848 ~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~  913 (1269)
                      .++++|+.|+|++|+|+.+.+  ..+..+++|+.|+|++|+|+++.. ..+..+ +|+.|+|++|.++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            456666666666666666553  344566666666666666666621 222222 66666777766653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.76  E-value=3.2e-06  Score=91.89  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             ccCCCCCCE--EeCCCCCCcccCc---ccccCCcccCeeecccccCcccCh--hhhhcCcccceEeccCccceeeecc--
Q psy5670         847 FNGLKELII--LRLDDNRLTEIRG---YEFERLENLRELYLQYNKIIYISN--RTFLSLTHLKVLQLDHNRITSFAVW--  917 (1269)
Q Consensus       847 f~~l~~L~~--L~L~~N~l~~i~~---~~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~--  917 (1269)
                      |...+.|..  ++++.|+...++.   ....++++|++|+|++|+|++++.  ..+..+++|+.|+|++|+|+++..-  
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            444555555  6778886555432   233568899999999999999874  6677899999999999999988433  


Q ss_pred             c-ccCCccEEEeeCCcccccCC
Q psy5670         918 H-LSSQIQSITLTSNPWSCDCD  938 (1269)
Q Consensus       918 ~-~~~~l~~l~l~~Np~~C~C~  938 (1269)
                      + .+ +|+.|+|++||+.-..+
T Consensus       217 l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGGGCS
T ss_pred             cccC-CcceEEccCCcCccccC
Confidence            3 23 89999999999754443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.42  E-value=4e-05  Score=77.05  Aligned_cols=33  Identities=12%  Similarity=0.211  Sum_probs=15.1

Q ss_pred             CCcEEEccCCCCCCch-hhhcCCCCCcEEECCCC
Q psy5670         440 SLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDN  472 (1269)
Q Consensus       440 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n  472 (1269)
                      .|++|++++|.++... ..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555544221 12344455555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.35  E-value=0.0001  Score=74.13  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=14.9

Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCC
Q psy5670         368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN  401 (1269)
Q Consensus       368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n  401 (1269)
                      .|++|++++|.++...-..+..+++|+.|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444444333333344444444444444

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.04  E-value=0.00044  Score=63.26  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             CceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHH
Q psy5670        1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFK 1162 (1269)
Q Consensus      1083 ~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~ 1162 (1269)
                      +.|.+||||+.+|   -.+.|+..|.  ++||...    |            +.|+.|..+|++++.....++|+++|++
T Consensus         3 ~~~~lFISh~~~d---~~~~L~~~l~--~~~f~~~----~------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~   61 (111)
T 1eiw_A            3 AEIRLYITEGEVE---DYRVFLERLE--QSGLEWR----P------------ATPEDADAVIVLAGLWGTRRDEILGAVD   61 (111)
T ss_dssp             CCEEEEECCCCSH---HHHHHHHHHH--HHCSCEE----E------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred             ceEEEEEecccHh---HHHHHHHHHh--CCCCeee----c------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence            5799999999998   3566777775  4566543    2            7789999999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCcchHHHHHHhC
Q psy5670        1163 SAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFAL 1217 (1269)
Q Consensus      1163 ~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~Fw~~l~~~l 1217 (1269)
                      .|..    .++.+|.|-....  +.+|..+..  .......|.    |+.+..|+
T Consensus        62 ~A~~----~gkpIigV~~~g~--~~~P~~l~~--~a~~iV~Wn----~~~I~~aI  104 (111)
T 1eiw_A           62 LARK----SSKPIITVRPYGL--ENVPPELEA--VSSEVVGWN----PHCIRDAL  104 (111)
T ss_dssp             HHTT----TTCCEEEECCSSS--SCCCTTHHH--HCSEEECSC----HHHHHHHH
T ss_pred             HHHH----cCCCEEEEEcCCC--CcCCHHHHh--hCceeccCC----HHHHHHHH
Confidence            8764    4477777766554  346665332  245578887    55555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.61  E-value=0.0039  Score=63.81  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=17.4

Q ss_pred             CCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCCCCCc
Q psy5670         437 NSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       437 ~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      ..+.|+.|+|++|.+.     .+...+..-+.|++|+|++|.|+.
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3344444444444443     222333334445555555554443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.43  E-value=0.0055  Score=62.69  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CCCCEEEccCCCCCccC----hhhhcCCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCC
Q psy5670         415 TALSVLSLDNNELEYIE----ENALKNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDN  472 (1269)
Q Consensus       415 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n  472 (1269)
                      +.|+.|+|++|.+....    ..++...+.|++|+|++|.|+     .+...+..-+.|++|+|++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            44444444444444221    123334455555555555555     22234444455666666544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.97  E-value=0.13  Score=46.21  Aligned_cols=48  Identities=17%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             CCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCC
Q psy5670         812 GNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD  860 (1269)
Q Consensus       812 ~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~  860 (1269)
                      |..++.|...+|.++.+|+.+.|..+ ++.|...+|.++.+|+.+.+.+
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            34455555556666555555555432 4555555555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.63  E-value=0.13  Score=46.16  Aligned_cols=50  Identities=14%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             CcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccccc
Q psy5670         836 SSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK  886 (1269)
Q Consensus       836 ~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~  886 (1269)
                      +..++.|...+|.++++|+.+.|.. .++.|...+|.++.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            3467777888888888888888874 4777877888888888888776654

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=91.33  E-value=0.55  Score=46.06  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCceEEEe-------cccCCC-CCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHH
Q psy5670        1092 SSKDEAFVAEELAPILENGDPAYKLCLH-------YREFPV-GGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKS 1163 (1269)
Q Consensus      1092 ~~~d~~~v~~~l~~~Le~~~~~~~l~~~-------~rd~~~-G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~ 1163 (1269)
                      +.+|.... +.|...-++ +.-|.. .+       .||-.. -.+|-..+.+-|++|+.+|+++|++...+.|-..|++.
T Consensus        27 a~~Di~yy-~lL~aWk~n-~n~F~F-~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~  103 (189)
T 3hyn_A           27 STHDFVYY-NMLRMWKGE-DNSFPF-NDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNY  103 (189)
T ss_dssp             GSTTHHHH-HHHHHHHHH-CTTSSC-CBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             ccchHHHH-HHHHHHHcC-CCceee-cchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHH
Confidence            45666554 335444444 222432 22       244445 45677999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEeC
Q psy5670        1164 AHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus      1164 a~~~~~~~~~~~i~i~~~ 1181 (1269)
                      |..+   .+.+||.|-.+
T Consensus       104 Ai~~---~~~PII~Vy~~  118 (189)
T 3hyn_A          104 GIGT---KGLPVIVIYPD  118 (189)
T ss_dssp             HTTT---TCCCEEEEETT
T ss_pred             HHHh---cCCcEEEEECC
Confidence            8731   33566666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1269
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-39
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	9e-37
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-28
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-27
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-39
 Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 9/147 (6%)

Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
            R+  +DAFVSYS +D  +V   +   LEN +P +KLCLH R+F  G +I D I+ ++E S
Sbjct: 2    RNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDL---DPDIRLYL 1196
             +T+ VLSENF+KSEWC+YE   +H ++        I+ILL  + +K +      +R  +
Sbjct: 62   HKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIM 121

Query: 1197 KSNTYLQW-----GDKLFWEKLKFALP 1218
             + TYL+W       + FW  L+ A+ 
Sbjct: 122  NTKTYLEWPMDEAQREGFWVNLRAAIK 148

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 9e-37
 Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVES 1139
             R+  F AF+SYS  D  +V  EL P LE      ++CLH R F  G  I + I+  +E 
Sbjct: 8    QRNLQFHAFISYSGHDSFWVKNELLPNLEK--EGMQICLHERNFVPGKSIVENIITCIEK 65

Query: 1140 SRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDP---DIRLY 1195
            S ++I VLS NF++SEWC YE   AHH +   G   LI+ILL  +PQ  +      ++  
Sbjct: 66   SYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSL 125

Query: 1196 LKSNTYLQWGD-----KLFWEKLKFALP 1218
            +   TYL+W        LFW  L+ A+ 
Sbjct: 126  MARRTYLEWPKEKSKRGLFWANLRAAIN 153

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (283), Expect = 5e-28
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 16/281 (5%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           +  +LDL NN    +    F  L  L  L L  N ++ ++  A   L  L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +P ++    ++L    +  N I  +   +FN L Q+IV++L  N L    +    F G
Sbjct: 92  KELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           + +L  + IA   +  +   +      L  LHL+ N+I  +   +   L+NL  L +S N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK----- 456
            +  +++ SL +   L  L L+NN+L       L +   +Q  +L+ N ++ I       
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 457 --VLRNLHSLKTLDLGDNLIT--EINNLSLNSLHQLAGLRL 493
                   S   + L  N +   EI   +   ++  A ++L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (280), Expect = 1e-27
 Identities = 74/309 (23%), Positives = 134/309 (43%), Gaps = 17/309 (5%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
            RC  +LRV+  S+   + +P +          L LQ N +T + D     L +L  L L
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLIL 62

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
             N +  I P  F     L+ +YL  N +  L   +   L +L V     NE+T+   + 
Sbjct: 63  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSV 119

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
                   +V L     K + +++  F+ + +L  + + +  I +I +    SL+ LH  
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-- 177

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
            +  NK+ ++++ SL  L  L+ L L  N +  ++  +L N+  L++ HLN NKL ++P 
Sbjct: 178 -LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 457 VLRNLHSLKTLDLGDNLITEINN------LSLNSLHQLAGLRLTENNIS--NISKGVFEK 508
            L +   ++ + L +N I+ I +               +G+ L  N +    I    F  
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 509 LSVLTILNL 517
           + V   + L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.7 bits (234), Expect = 2e-21
 Identities = 62/289 (21%), Positives = 115/289 (39%), Gaps = 32/289 (11%)

Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
            T  LD+ +N  T         L++L +L L  N I  +    F PL  L  L L++N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH 263
             +                 + L +  N    +    F+ L+++  + L  N L      
Sbjct: 92  KELPEKMPKTL---------QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 264 --ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
             A  G+  L+ + ++  N+  IP  L      L E++L  N I  +       L  L  
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
           L LS N ++     +   +    L  L++  NK+ K+   +  D   +QV++L NN I +
Sbjct: 200 LGLSFNSISAVDNGSLANT--PHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISA 256

Query: 382 IHRNTFAS------LSNLHTLIMSNNKLK--RIESNSLDSLTALSVLSL 422
           I  N F         ++   + + +N ++   I+ ++   +   + + L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.6 bits (231), Expect = 4e-21
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 25/290 (8%)

Query: 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
                LDL  N I  + D  F  L++L  L L  NK+S ++  +F+        + L  L
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL------VKLERL 84

Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP- 285
            LS N    LP +       LQEL +  N +T +     +GLN + V+ L  N L +   
Sbjct: 85  YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 286 -PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
               F   + L  + + + +I  +  G+      L  L L  N++T   V+AA+  GL+ 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT--KVDAASLKGLNN 196

Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
           L  L +++N ++ +D+    +   L+ LHL NN++  +          +  + + NN + 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNIS 255

Query: 405 RIESNS------LDSLTALSVLSLDNNELEY--IEENALKNSTSLQDFHL 446
            I SN            + S +SL +N ++Y  I+ +  +         L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.9 bits (224), Expect = 2e-20
 Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 11/258 (4%)

Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
             +L++  NK+ ++    FK+L  L  L L NN+I  I    FA L  L  L +S N+LK
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
            +      +L  L V   +  ++     N L     ++                + +  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
             + + D  IT I      SL +   L L  N I+ +     + L+ L  L L+ N I  
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD--------YAL 576
           V+ G+  N  +L  + L+ N L  + G       +  + +  N +            Y  
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 577 IPADLQWLDIHGNQISEL 594
             A    + +  N +   
Sbjct: 270 KKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.3 bits (220), Expect = 1e-19
 Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 10/258 (3%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
             +L L+NN+I  I    F +L NLHTLI+ NNK+ +I   +   L  L  L L  N+L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            + E   K    L+       K+ +      N   +  L       + I N +   + +L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY-LT 547
           + +R+ + NI+ I +G+      LT L+L  NKI KV+A +    +NL  + L  N    
Sbjct: 153 SYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 548 DIGGLFPKLPNLVWLNIS-ENLLEWFDYALIPADLQWLDIHGNQISELGN-----YFEIE 601
              G     P+L  L+++   L++          +Q + +H N IS +G+          
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 602 SQLRLTYFDASSNKLTEL 619
            +   +     SN +   
Sbjct: 270 KKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 60/298 (20%), Positives = 114/298 (38%), Gaps = 27/298 (9%)

Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
           L+V+   +  +E + ++      +   L + NNK+  I+     +L  L  L L NN++ 
Sbjct: 12  LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
            I   A      L+  +L+ N+L E+P+ +      + L + +N IT++     N L+Q+
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQM 126

Query: 489 AGLRL--TENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
             + L       S I  G F+ +  L+ + +A   I  +  G      +L  + LDGN +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKI 183

Query: 547 TD-IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
           T         L NL  L +S N +   D   +       ++H N    +     +     
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
           +      +N ++ +  N                    P     K + + V L  N ++
Sbjct: 244 IQVVYLHNNNISAIGSNDF----------------CPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 6e-17
 Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 24/280 (8%)

Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
           + +  G F+ L +L  L +   KI  +S G+F  L KL+ L L  +        +  +  
Sbjct: 44  TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL- 102

Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
                    + L +  N I  +  ++F  L  +  + L  N L      S       +  
Sbjct: 103 ---------QELRVHENEITKVRKSVFNGLNQMIVVELGTNPL----KSSGIENGAFQGM 149

Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
             L  + +++ +  ++P         L EL+L GN +T +   +L GLN+L  L LS N+
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE----EWVNA 336
           +  +       +  L+E++L NN +  +  G+ +    + V+ L NN ++     ++   
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 337 ATFSGLHRLVVLNIAYNKMN--KLDSSIFKDLYRLQVLHL 374
              +       +++  N +   ++  S F+ +Y    + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 31/190 (16%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
           CP  C C+  V      + CS  G + ++P  +P D   L L  N+I  +    F   K 
Sbjct: 4   CPFRCQCHLRV------VQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 56

Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           L  L L ++ +  I    F  L +L  L L  N+L E+     + L+ LR    +  K+ 
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

Query: 889 YIS-----------------------NRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
                                     N  F  +  L  +++    IT+       S +  
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS-LTE 175

Query: 926 ITLTSNPWSC 935
           + L  N  + 
Sbjct: 176 LHLDGNKITK 185

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 4e-11
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 3/217 (1%)

Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
           L L  N I+ I  G F+ L  L  L L +NKI K+  G F     L  + L  N L ++ 
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR-LTYF 609
              PK    + ++ +E              +  +++  N +   G        ++ L+Y 
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
             +   +T +    +P S+  L L  N I+KV   +     NL ++ L  N +  ++  +
Sbjct: 156 RIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVN 706
           L  +P     ++ +  + + P     + +++Q   ++
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLH 250

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 45/315 (14%)

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
           L     S   L ++  + +P     L L NN I++++   F    NL  + L+ N++  I
Sbjct: 12  LRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 666 NQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLL 725
           +  A           +    + E P +    +Q L+ +             +  V   + 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE----------ITKVRKSVF 120

Query: 726 YNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANV 785
                  ++    +  +           +         D  +T                 
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----------------- 163

Query: 786 IDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK 845
                      +P  +P   TEL+LDGN+I  V + S  G   L  L L+ + +  + N 
Sbjct: 164 ----------TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF------LSLT 899
           +      L  L L++N+L ++        + ++ +YL  N I  I +  F          
Sbjct: 214 SLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 900 HLKVLQLDHNRITSF 914
               + L  N +  +
Sbjct: 273 SYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 5/149 (3%)

Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI--HNKTFNGLKELI 854
           LP ++P    EL +  N I  V    F G  ++ ++ L ++ +++    N  F G+K+L 
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
            +R+ D  +T I         +L EL+L  NKI  +   +   L +L  L L  N I++ 
Sbjct: 154 YIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 915 AVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
               L++      L  N            
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLA 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 1e-15
 Identities = 57/279 (20%), Positives = 100/279 (35%), Gaps = 12/279 (4%)

Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN- 283
                     ++P    +     Q ++L GN ++ +   +     +LT+L L  N L   
Sbjct: 15  TTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
                   +   +     N  +  + P  F+ L +L  L L       + +    F GL 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLA 129

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
            L  L +  N +  L    F+DL  L  L L  N+I S+    F  L +L  L++  N++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
             +  ++   L  L  L L  N L  +   AL    +LQ   LN N      +       
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
           L+            + +  +   +LAG  L     +++ 
Sbjct: 250 LQKFRGSS------SEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 6/256 (2%)

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
                 +     L  +P  +       + ++L  N I+ +    F     L +L L +N 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
                  AA         +      ++  +D + F  L RL  LHL+   ++ +    F 
Sbjct: 68  -LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
            L+ L  L + +N L+ +  ++   L  L+ L L  N +  + E A +   SL    L+ 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 449 NKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFE 507
           N++  + P   R+L  L TL L  N ++ +   +L  L  L  LRL +N           
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARP 245

Query: 508 KLSVLTILNLASNKIQ 523
             + L     +S+++ 
Sbjct: 246 LWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 3e-11
 Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)

Query: 750 NCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809
            C  L            +              + +                  +    L+
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL--HTLH 111

Query: 810 LDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGY 869
           LD   +  +G   F G   LQ L+L  + ++ + + TF  L  L  L L  NR++ +   
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 870 EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSIT 927
            F  L +L  L L  N++ ++    F  L  L  L L  N +++     L+    +Q + 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 928 LTSNPWSCDCDFTEKFRDYLQRSRSSVHDIS 958
           L  NPW CDC        +LQ+ R S  ++ 
Sbjct: 232 LNDNPWVCDCRARP-LWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 18/268 (6%)

Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
             + + +   +I ++ A SFR  R L  L L ++       +      +      S    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---- 88

Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
                 + ++  A F  L  L  L+L +                 R    L+ L L +N+
Sbjct: 89  --DNAQLRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNA 140

Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
             +LP + F  L  L  L+L GN ++ + + A  GL+SL  L L  N + ++ P  F   
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY 352
             L  +YL  N+++ L       L  L  L L++N    +      ++ L +    +   
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS--- 257

Query: 353 NKMNKLDSSIFKDLYRLQVLHLENNQIE 380
              +++  S+ + L    +  L  N ++
Sbjct: 258 ---SEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 49/270 (18%), Positives = 90/270 (33%), Gaps = 14/270 (5%)

Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLD-NNELEY 429
                   ++++     A+   +    +  N++  + + S  +   L++L L  N     
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 430 IEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
                   +   Q    +  +L  + P     L  L TL L    + E+       L  L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L L +N +  +    F  L  LT L L  N+I  V    F    +L  + L  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 549 IG-GLFPKLPNLVWLNISEN--LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
           +    F  L  L+ L +  N       +       LQ+L ++ N      +         
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV--CDCRARPLWAW 249

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTN 635
           L  F  SS+++      ++P  +    L  
Sbjct: 250 LQKFRGSSSEVP----CSLPQRLAGRDLKR 275

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 43/263 (16%), Positives = 71/263 (26%), Gaps = 33/263 (12%)

Query: 650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
               R+ L GNR+ ++   + R                          + L    ++   
Sbjct: 32  AASQRIFLHGNRISHVPAASFR------------------------ACRNLTILWLHSNV 67

Query: 710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTC 769
                    T    L     +    L+      F      +   L  C   +        
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 770 PNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829
                  +        +   T      L          L+L GNRI  V   +F G   L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLT--------HLFLHGNRISSVPERAFRGLHSL 179

Query: 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889
             L L+ + V  +H   F  L  L+ L L  N L+ +       L  L+ L L  N  + 
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 890 ISNRTFLSLTHLKVLQLDHNRIT 912
                 L    L+  +   + + 
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVP 261

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 2e-15
 Identities = 84/371 (22%), Positives = 148/371 (39%), Gaps = 43/371 (11%)

Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
             L   +     ++  + L ++  L      +  +    ++ LN+LT +N S N L +I 
Sbjct: 27  TVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT 82

Query: 286 P--------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
           P        ++   +  + ++    N  N+    +FN     I    +   L    +++ 
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTL 396
           T S +  L  L            +  K L  L  L   +    +    +  A L+NL +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
           I +NN++  I    +   T L  LSL+ N+L+ I    L + T+L D  L  N+++ +  
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 258

Query: 457 VLRNLHSLKTLDLGDNLITEINNLSLNS--------------------LHQLAGLRLTEN 496
            L  L  L  L LG N I+ I+ L+  +                    L  L  L L  N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKL 556
           NIS+IS      L+ L  L  A+NK+  V +    N +N+  +    N ++D+  L   L
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA-NL 372

Query: 557 PNLVWLNISEN 567
             +  L +++ 
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.8 bits (185), Expect = 6e-15
 Identities = 77/396 (19%), Positives = 152/396 (38%), Gaps = 39/396 (9%)

Query: 161 VFTDE-LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
           +FTD  L       L   ++          L  ++ L   +  + ++    + N      
Sbjct: 15  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN------ 66

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL------TV 273
             NL  ++ SNN    +       L++L ++ +  N +  +   A     +        +
Sbjct: 67  --NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL-DLSNNELTEE 332
            ++     +     L   S  + ++   +   ++      N +T L  L +L+  E  + 
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 333 WVN----AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
             N     +  + L  L  L    N+++ +          L  L L  NQ++ I   T A
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLA 238

Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
           SL+NL  L ++NN++  +    L  LT L+ L L  N++  I   A   + +  + + N 
Sbjct: 239 SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
            +         NL +L  L L  N I++I+ +S  SL +L  L    N +S++S      
Sbjct: 297 LEDISPI---SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDVSS--LAN 349

Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
           L+ +  L+   N+I  +      N + +  + L+  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 1e-12
 Identities = 82/395 (20%), Positives = 157/395 (39%), Gaps = 30/395 (7%)

Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
             L       L   N+ +   +       +  +      I  +  G+   L  L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSI-DGVEY-LNNLTQINFS 74

Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
           NN+LT+          L +LV + +  N++  +             L           +N
Sbjct: 75  NNQLTDI----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
                 NL+ L +S+N +  I + S  +          +   +  +   L N T+L+   
Sbjct: 131 LT----NLNRLELSSNTISDISALSGLTSL-----QQLSFGNQVTDLKPLANLTTLERLD 181

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
           ++ NK      VL  L +L++L   +N I++I  L +     L  L L  N + +I  G 
Sbjct: 182 ISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GT 236

Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
              L+ LT L+LA+N+I  +        + L  ++L  N +++I      L  L  L ++
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 293

Query: 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
           EN LE         +L +L ++ N IS++     + S  +L     ++NK+++++  A  
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVSSLANL 350

Query: 626 HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGN 660
            ++  L   +N IS + P        +T++ L   
Sbjct: 351 TNINWLSAGHNQISDLTPLANL--TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 4e-12
 Identities = 63/366 (17%), Positives = 134/366 (36%), Gaps = 40/366 (10%)

Query: 156 DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS----F 211
           +++  V   +L  + +L      I ++       L +L+ +N + N+L+++         
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKL 90

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
            +       I       +  +   L               L       L+ + +  +++L
Sbjct: 91  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 150

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV-LTQLIVLDLSNNELT 330
           + L                   +L  +   + S N ++       LT L  L  +NN+++
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
           +          L  L  L++  N++  + +     L  L  L L NNQI ++     + L
Sbjct: 211 DI----TPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGL 262

Query: 391 SNLHTLIMSNNKLKRIES--------------------NSLDSLTALSVLSLDNNELEYI 430
           + L  L +  N++  I                      + + +L  L+ L+L  N +  I
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 431 EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAG 490
               + + T LQ      NK++++   L NL ++  L  G N I+++  L+  +L ++  
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA--NLTRITQ 377

Query: 491 LRLTEN 496
           L L + 
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 2e-11
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 27/209 (12%)

Query: 150 WSTMSLDISHNVFTDEL-----QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS 204
            +  SL  ++N  +D        +L+ L L+ N +  +       L +L+ L+L  N++S
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 205 NVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHA 264
           N+A  S            L  L L  N   ++     + L+ L  L L  N L       
Sbjct: 255 NLAPLSGLT--------KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISP 302

Query: 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
           +  L +LT L L  NN+ +I P   +    L+ ++  NN ++ +   + N LT +  L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-SSLAN-LTNINWLSA 358

Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYN 353
            +N++++        + L R+  L +   
Sbjct: 359 GHNQISDL----TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 3e-10
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 146 HNTDWSTMSLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQ 200
                +   L ++ N   D      L +L  LDL+ N I  L       L  L+ L L  
Sbjct: 215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 201 NKLSNVATFSFSNYDT--------------ARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246
           N++SN++  +     T                   NL  L L  N+   +     S L++
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
           LQ L+   N ++ ++  +L  L ++  L+   N + ++ P        + ++ L + 
Sbjct: 331 LQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 4e-10
 Identities = 55/348 (15%), Positives = 114/348 (32%), Gaps = 30/348 (8%)

Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR-VDLVGNRLK 663
           ++T   A    +  + G    +++  +  +NN ++ + P       NLT+ VD++ N  +
Sbjct: 45  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMNNNQ 99

Query: 664 NINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCK 723
             + T L      +   + +  I +     +         S N   +   L  L ++   
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 724 LLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEA 783
              N+      L    + + L       + +         +  +   N  +    +    
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI- 842
           N+ + S  G   +    +        LD     +       G  KL  L L ++ +  I 
Sbjct: 220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 843 -------------------HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ 883
                                   + LK L  L L  N +++I       L  L+ L+  
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA 337

Query: 884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
            NK+  +S  +  +LT++  L   HN+I+        ++I  + L   
Sbjct: 338 NNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 97  LFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR------------ 144
           L        G+  +L +L DL +   +I NL+     GL KL  L L             
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAG 283

Query: 145 -THNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
            T  T+       +        L++L  L L  N+I  +       L  L  L    NK+
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
           S+V++ +           N+  L   +N    L     + L+R+ +L L   
Sbjct: 342 SDVSSLANLT--------NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 70/357 (19%), Positives = 136/357 (38%), Gaps = 52/357 (14%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            +     K N  D+    DL ++  L  +   I+SI  +    L+NL  +  SNN+L  I
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI 81

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQD--------------------FHL 446
               L +LT L  + ++NN++  I   A   + +                         L
Sbjct: 82  T--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 447 NGNKLTEIPKVLRNLHSLK---------TLDLGDNLITEINNLSLN---------SLHQL 488
           + N +++I  +       +            L +    E  ++S N          L  L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
             L  T N IS+I+       + L  L+L  N+++ +  GT  + +NL  + L  N +++
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 255

Query: 549 IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTY 608
           +      L  L  L +  N +           L  L+++ NQ+    +   I +   LTY
Sbjct: 256 LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE---DISPISNLKNLTY 311

Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
                N +++++  +    ++ LF  NN +S     +     N+  +    N++ ++
Sbjct: 312 LTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 16/293 (5%)

Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
           + IF D    + +     +       +   L  + TL      +K I+   ++ L  L+ 
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQ 70

Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
           ++  NN+L  I    LKN T L D  +N N++ +I  +    +        + +      
Sbjct: 71  INFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
               +L  L  L L+ N IS+IS                 +   +V       N   +  
Sbjct: 129 ---KNLTNLNRLELSSNTISDISALSG------LTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
               +       +  KL NL  L  + N +       I  +L  L ++GNQ+ ++G    
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---T 236

Query: 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNL 652
           + S   LT  D ++N+++ L   +    +  L L  N IS + P         
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 289

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 52/293 (17%), Positives = 103/293 (35%), Gaps = 30/293 (10%)

Query: 423 DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS- 481
             N  + + +  L   T+L     +   +  I   +  L++L  ++  +N +T+I  L  
Sbjct: 31  KTNVTDTVSQTDLDQVTTL---QADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKN 86

Query: 482 ---LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
              L  +            ++N++      L    I ++   K          +++ +  
Sbjct: 87  LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 146

Query: 539 IRLDGNYLTD----------IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHG 588
           I       +                  L  L  L+IS N +          +L+ L    
Sbjct: 147 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 206

Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFM 648
           NQIS++     + +   L     + N+L ++   A   ++ +L L NN IS + P     
Sbjct: 207 NQISDITPLGILTN---LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG 261

Query: 649 KPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701
              LT + L  N++ N       ISPL     + +  + EN  +    +  L+
Sbjct: 262 LTKLTELKLGANQISN-------ISPLAGLTALTNLELNENQLEDISPISNLK 307

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 8/205 (3%)

Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
           + S   +N    NL  +PP+L    +D   ++L  N +   +       T+L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
           ELT+  V+         ++      +   +    + + L  L VL +  N++ S+     
Sbjct: 66  ELTKLQVDGT-----LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
             L  L  L +  N+LK +    L     L  LSL NN L  +    L    +L    L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDN 472
            N L  IPK     H L    L  N
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 6/182 (3%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           +  +L LS N   +         +RL +L L    LT L         +L VL     + 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----GTLPVLGTLDLSH 86

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +               L  +   + +  +  +     + +L       + +     + 
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
             +L  L++A N + +L + +   L  L  L L+ N + +I +  F     L    +  N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

Query: 402 KL 403
             
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 42/229 (18%), Positives = 70/229 (30%), Gaps = 48/229 (20%)

Query: 786 IDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSS-------- 837
           ++C        LPP +P D T L+L  N +      + +   +L  L L+ +        
Sbjct: 15  VNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 838 -------------------------------------HVETIHNKTFNGLKELIILRLDD 860
                                                 + ++      GL EL  L L  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS 920
           N L  +          L +L L  N +  +       L +L  L L  N + +       
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 921 -SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968
              +    L  NPW C+C+    FR +LQ +  +V+   Q   +     
Sbjct: 194 SHLLPFAFLHGNPWLCNCEI-LYFRRWLQDNAENVYVWKQGVDVKAMTS 241

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 53/176 (30%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK---------------LSNVATFSF 211
           +    L LS N ++T   A   P   L+ LNL + +               L        
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
           S     +    L VLD+S N   SLP      L  LQELYL+GN L  L    L     L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
             L+L+ NNL  +P  L N   +L  + LQ NS+  +  G F     L    L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 36/213 (16%), Positives = 67/213 (31%), Gaps = 9/213 (4%)

Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571
            TIL+L+ N +      T    + L  + LD         +   LP L  L++S N L+ 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 572 FDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL 631
                       +               +     L       N+L  L    +  + +  
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 632 FLTN--NLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
            L+   N ++++         NL  + L  N L  I +       LP        ++  N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF------AFLHGN 205

Query: 690 PFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
           P+ C+C + + + +  +   N         V  
Sbjct: 206 PWLCNCEILYFRRWLQDNAENVYVWKQGVDVKA 238

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 43/207 (20%), Positives = 64/207 (30%), Gaps = 26/207 (12%)

Query: 755 CHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNR 814
               +      + T P   T     +   ++           +        T L      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP----- 116

Query: 815 IPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL 874
                  +  G  +LQ L+L  + ++T+         +L  L L +N LTE+       L
Sbjct: 117 -----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN------RITSFAVW---------HL 919
           ENL  L LQ N +  I    F     L    L  N       I  F  W           
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVW 230

Query: 920 SSQIQSITLTSNPWSCDCDFTEKFRDY 946
              +    +TSN  S  CD ++KF  Y
Sbjct: 231 KQGVDVKAMTSNVASVQCDNSDKFPVY 257

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.8 bits (143), Expect = 7e-10
 Identities = 37/314 (11%), Positives = 88/314 (28%), Gaps = 19/314 (6%)

Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
               + ++  L+ L    +P  +E+L  + N ++++         +L  + +  N LK +
Sbjct: 40  AHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLKAL 93

Query: 666 NQTA-----LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTV 720
           +        L +S     K                N    +   +          +    
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 721 TCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVS 780
               L N      +  + +S + L +   +   +    +      E+      T  +  +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 781 WEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVE 840
                +       +        +              V  + F G  +L       +   
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 841 TIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTH 900
                  +    L  L + +N+L E+          L  L   +N +  +         +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVPE----LPQN 325

Query: 901 LKVLQLDHNRITSF 914
           LK L +++N +  F
Sbjct: 326 LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.5 bits (142), Expect = 1e-09
 Identities = 53/320 (16%), Positives = 94/320 (29%), Gaps = 21/320 (6%)

Query: 155 LDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211
           L++++   +   +    LESL  S NS+  LP+      QSL  L +  N L  ++    
Sbjct: 43  LELNNLGLSSLPELPPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLKALSDLPP 98

Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
                      L  L    NS      +  +   +               ++ L+ L  L
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL------S 325
             L        +           L    +   +  +        L  L  +        +
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
             +L                +           +  +IF  L  L       N   +  R+
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
                 +L  L +SNNKL  + +        L  L    N L  + E       +L+  H
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLH 330

Query: 446 LNGNKLTEIPKVLRNLHSLK 465
           +  N L E P +  ++  L+
Sbjct: 331 VEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 5e-07
 Identities = 43/331 (12%), Positives = 100/331 (30%), Gaps = 27/331 (8%)

Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL--------TGNAIPHSVENLF 632
              L+++   +S L      E    L    AS N LTEL        +     ++++ L 
Sbjct: 40  AHELELNNLGLSSLP-----ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 633 LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQ 692
               L+  +      ++      +    ++ +++  +L+  P                 +
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 693 CDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCA 752
                      ++  + N    +    ++ + +    N    L E  +  FL     +  
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 753 PLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDG 812
            L    D       +   +N         ++      +    + L    P          
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-----LYYL 269

Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
           N               L+ L ++++ +  +          L  L    N L E+     E
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP----E 321

Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
             +NL++L+++YN +    +    S+  L++
Sbjct: 322 LPQNLKQLHVEYNPLREFPD-IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 9e-07
 Identities = 49/338 (14%), Positives = 97/338 (28%), Gaps = 27/338 (7%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
               L+L+N    SLP         L+ L    N LT L +       SL  L +  NNL
Sbjct: 39  QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNL 90

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
             +              YL  ++  +         + L ++D+ NN L +      +   
Sbjct: 91  KALSDLPPLL------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
           +           ++  L            +  L +  +         ++      + +  
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
            L  I +++    T       D               T L +   +   L     +   L
Sbjct: 205 FLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
             L       N  +       +    L  L ++ N +  +          L  L  + N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNH 315

Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNL 559
           + +V     +   NL  + ++ N L +   +   + +L
Sbjct: 316 LAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-06
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 143 LRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
           L T   D + +          + L   ++    +  +      +       S L+     
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
           L  +   S           +L  L++SNN    LPA       RL+ L    N L  + +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE 321

Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
                  +L  L++  N L   P    +    ++++ + +
Sbjct: 322 L----PQNLKQLHVEYNPLREFPDIPES----VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 57/333 (17%), Positives = 101/333 (30%), Gaps = 34/333 (10%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
               L+L+   + +LP+        L  L  + N L+ +               +L+ L 
Sbjct: 39  QAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQ----------SLKSLL 84

Query: 228 LSNNSFDSL----PAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
           + NN+  +L    P   +  +S  Q   L     +          NSL  L     +L  
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
           I           +   L   +           L  L +   S                L 
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES--------IHRNTFASLSNLHT 395
            L  +    N +  L              +   +  E         +  N F+ LS L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
            +   N       +  D   +L  L++ NN+L  +          L+    + N L E+P
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP 320

Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
           ++ +NL   K L +  N + E  ++   S+  L
Sbjct: 321 ELPQNL---KQLHVEYNPLREFPDI-PESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 7e-06
 Identities = 57/329 (17%), Positives = 111/329 (33%), Gaps = 24/329 (7%)

Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
                L L+   L ++P    +    L+ +    NS+  L P +   L  L+V + +   
Sbjct: 38  RQAHELELNNLGLSSLPELPPH----LESLVASCNSLTEL-PELPQSLKSLLVDNNNLKA 92

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY-RLQVLHLENNQIESIHRNTF 387
           L++           +  +         + L      +   +       + +  +   N  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
             L  L  L           S        LS+ S+        E   L+N   L   + +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEI---------NNLSLNSLHQLAGLRLTENNI 498
            N L  +P +  +L +L   D     + E+         +    + L +L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558
           SN  + + +    L  LN+++NK+ ++ A        L  +    N+L ++  L     N
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPEL---PQN 325

Query: 559 LVWLNISENLLEWFDYALIPADLQWLDIH 587
           L  L++  N L  F    IP  ++ L ++
Sbjct: 326 LKQLHVEYNPLREFPD--IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 52/327 (15%), Positives = 93/327 (28%), Gaps = 35/327 (10%)

Query: 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
           C  +    L L    LS++               +L  L  S NS   LP         L
Sbjct: 35  CLDRQAHELELNNLGLSSLPELPP----------HLESLVASCNSLTELPEL----PQSL 80

Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
           + L +  N L  L       L  L V N  +  L  +    F +  D+    L+      
Sbjct: 81  KSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367
            +          +        L       A  + L +L  L ++   +   ++ + +   
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 368 RLQVLHLENNQIESIHRNTFASLSNLH-------------TLIMSNNKLKRIESNSLDSL 414
              +  L     ++    T   L                   +  +     +  N    L
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
           + L       N       +      SL++ +++ NKL E+P        L+ L    N +
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHL 316

Query: 475 TEINNLSLNSLHQLAGLRLTENNISNI 501
            E+  L       L  L +  N +   
Sbjct: 317 AEVPEL----PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 35/306 (11%), Positives = 80/306 (26%), Gaps = 27/306 (8%)

Query: 648 MKPNLTRVDLVGNRLKNI-----NQTAL-----RISPLPSH-KNIPDFYIGENPFQCDCN 696
           +      ++L    L ++     +  +L      ++ LP   +++    +  N  +   +
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 697 MQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCH 756
           +  L  Y          L +L   +   + +  N ++                N      
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 757 CCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ----------LPPRIPMDAT 806
               +         +N +         ++     G    +          L      +  
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
              L      +   +              S     +    F+GL EL       N  +  
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSI 926
                +   +L EL +  NK+I +          L+ L    N +       L   ++ +
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP--ELPQNLKQL 329

Query: 927 TLTSNP 932
            +  NP
Sbjct: 330 HVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA 579
           N          D   +L  + +  N L ++  L    P L  L  S N L       +P 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE--LPQ 324

Query: 580 DLQWLDIHGNQISELGNYFEIESQLRL 606
           +L+ L +  N + E  +  E    LR+
Sbjct: 325 NLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
           RVL L++     L      +L  +  L L  N L  L   AL  L  L VL  S N L N
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 284 IPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEE 332
           +          L+E+ L NN +    A        +L++L+L  N L +E
Sbjct: 58  VDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
           +VLHL +  +  +       L  +  L +S+N+L+ +   +L +L  L VL   +N LE 
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
           ++  A            N  + +   + L +   L  L+L  N + +   +       L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 490 GLR 492
            + 
Sbjct: 118 SVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
           + ++L +  + VL       L  +  LDLS+N L          + L  L VL  + N +
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNAL 55

Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
             +D        +   L L NN+++         S   L  L +  N L + E       
Sbjct: 56  ENVDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 415 TALSVLS 421
             L  +S
Sbjct: 114 EMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD 573
           +L+LA   +  +     +    +  + L  N L  +      L  L  L  S+N LE  D
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 574 YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
                  LQ L +  N++ +      + S  RL   +   N L +  G
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 155 LDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATF 209
           L ++H   T      +L  +  LDLS N +  LP A+           L   ++   +  
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA---------ALRCLEVLQASDN 53

Query: 210 SFSNYDTARCGINLRVLDLSNNSFDSLPA-EGFSRLSRLQELYLQGNILTFLAD 262
           +  N D       L+ L L NN      A +      RL  L LQGN L     
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
           VL L + +L  +    L+    +    L+ N+L  +P  L  L  L+ L   DN +  ++
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 479 NLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKVE 526
            ++     Q   L L  N +   +          L +LNL  N + + E
Sbjct: 60  GVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
           L L+   +  L       L  +++L+L+ N+L        +          L VL  S+N
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-------ALPPALAALRCLEVLQASDN 53

Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLAD-HALDGLNSLTVLNLSVNNLVNIP 285
           + +++   G + L RLQEL L  N L   A    L     L +LNL  N+L    
Sbjct: 54  ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 562 LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
           L+++   L    +      +  LD+  N++        + +   L    AS N L  + G
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG 60

Query: 622 NAIPHSVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
            A    ++ L L NN + +       +  P L  ++L GN L   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 7/239 (2%)

Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
           C  + RV     +    +P++         EL      L  +   A  G   L  + +S 
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 62

Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL--SNNELTEEWVNA 336
           N+++ +       +           + N+L            +  L  SN  +       
Sbjct: 63  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 122

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
              S    L+ +    N      +S     +   +L L  N I+ IH   F         
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
           +  NN L+ + ++     +   +L +    +  +    L+N   L+    +   L ++P
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 8e-07
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
            N   +  V  +L+ I + A           I    + E       +          ++ 
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTC 769
                                        ++  ++        P            +   
Sbjct: 89  -----------------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLP 119

Query: 770 PNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829
             +              + +    +      +  ++  L+L+ N I  + + +F G +  
Sbjct: 120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD 179

Query: 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
           ++   +++++E + N  F+G    +IL +   R+  +  Y  E L+ LR       K +
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 6/230 (2%)

Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
             F    +K+TE+  + +P +   L      +  +Q   F    +L ++++  N +  + 
Sbjct: 11  RVFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLY 726
           +       + S+         E                 N +    +   +  +      
Sbjct: 70  EA-----DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 727 NRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVI 786
           +     +L  + + N    E  +                 +   +NC        E N+ 
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 787 DCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNS 836
           D +                  L +   RI  + S+     KKL+     +
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 9/241 (3%)

Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
           S        + +  +P  +    ++   L     KL  +   +FS +           + 
Sbjct: 9   SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIE----IS 61

Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
            ++           +     +    + N L ++   A   L +L  L +S   + ++P  
Sbjct: 62  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
               S     + +Q+N           V      + L  N+   + ++   F+G     +
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
                N + +L + +F       +L +   +I S+      +L  L     S   LK++ 
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

Query: 408 S 408
           +
Sbjct: 240 T 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 8/235 (3%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
           S  V     + +  IP +L    R+  E+      + V+  G F+    L  +++S N++
Sbjct: 9   SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
            E        +      +     N +  ++   F++L  LQ L + N  I+ +       
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 390 LSNLHTLIMSN--NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
                 L + +  N      ++ +       +L L+ N ++ I   A   +   +    +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 448 GNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI 501
            N L E+P  V         LD+    I  + +  L +L +L        N+  +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 25/177 (14%), Positives = 56/177 (31%)

Query: 734 LLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGY 793
           + +         +  +N   L       A +     P       ++ +            
Sbjct: 60  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 119

Query: 794 DNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKEL 853
           D      +     ++  + N   +  +       +  IL+LN + ++ IHN  FNG +  
Sbjct: 120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD 179

Query: 854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
            +   D+N L E+    F        L +   +I  + +    +L  L+     + +
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 146 HNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
            N   +    ++ ++VF         LD+S   I +LP      L+ L   +    K
Sbjct: 181 LNLSDNNNLEELPNDVFHG-ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 8e-08
 Identities = 48/464 (10%), Positives = 109/464 (23%), Gaps = 41/464 (8%)

Query: 463 SLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKG----VFEKLSVLTILNL 517
            +++LD+    +++     L   L Q   +RL +  ++                L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
            SN++  V                       + GL      +  L++    L      ++
Sbjct: 63  RSNELGDVGVHCV------------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
            + L+ L              +   QL          +L +L       S  +     ++
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNM 697
           +     +      N    +     L    + +         ++             D   
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----DNCRDLCG 220

Query: 698 QWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHC 757
                 S+ +     N +    +           + L         +             
Sbjct: 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 758 CDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPV 817
                 +  +           +  E  +                       +        
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-- 338

Query: 818 VGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR----GYEFER 873
              + F+   ++    L  + V  +          L +L L D  +++            
Sbjct: 339 ---NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 395

Query: 874 LENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQLDHNRIT 912
             +LREL L  N +     + +          L+ L L     +
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 221 INLRVLDLSNNSF-DSLPAEGFSRLSRLQELYLQGNILT-----FLADHALDGLNSLTVL 274
           ++++ LD+      D+  AE    L + Q + L    LT      ++  AL    +L  L
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAEL 60

Query: 275 NLSVNNL-----VNIPPELFNQSRDLKEVYLQNN 303
           NL  N L       +   L   S  ++++ LQN 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-04
 Identities = 53/510 (10%), Positives = 119/510 (23%), Gaps = 62/510 (12%)

Query: 392 NLHTLIMSNNKLKRIESNSL-DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
           ++ +L +   +L       L   L    V+ LD+                     L   +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-------------------GLTEAR 43

Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
             +I   LR   +L  L+L  N                    L +  +  + +G+     
Sbjct: 44  CKDISSALRVNPALAELNLRSN-------------------ELGDVGVHCVLQGLQTPSC 84

Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
            +  L+L +  +     G   +    +    + +   ++         L+   + +    
Sbjct: 85  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCR 142

Query: 571 WFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVEN 630
                L    L                   E  +     + +  ++        P  +E 
Sbjct: 143 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 202

Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
           L L +  ++                        N           P   +          
Sbjct: 203 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 262

Query: 691 FQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETN 750
           ++C    +            +                       L E          ++ 
Sbjct: 263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322

Query: 751 CAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYL 810
                 C  F +   +          ++   +A V +   G                L+L
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG------SVLRVLWL 376

Query: 811 DGNRIPVVG----SHSFIGRKKLQILFLNSSH-----VETIHNKTFNGLKELIILRLDDN 861
               +        + + +    L+ L L+++      +  +          L  L L D 
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYIS 891
             +E      E  + L+ L      +  IS
Sbjct: 437 YWSE------EMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKMN-----KLDSSI 362
            G+    + L VL L++ ++++   +  AAT    H L  L+++ N +      +L  S+
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 363 FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            +    L+ L L +        +       L  L      L+ I
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.003
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 168 SLESLDLSMNSIWTLPDAIFCP-LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
            ++SLD+    +     A   P LQ    + L    L+       S+    R    L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAEL 60

Query: 227 DLSNNSFDSLPAEGFSRL-----SRLQELYLQGN 255
           +L +N    +      +       ++Q+L LQ  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.004
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 292 SRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVL 348
           S D++ + +Q   ++      +  +L Q  V+ L +  LTE      ++       L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 349 NIAYNK-----MNKLDSSIFKDLYRLQVLHLENNQIESIH 383
           N+  N+     ++ +   +     ++Q L L+N  +    
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR-K 827
           CP  C C      E   +DC+  G   ++P  IP+  TEL L+ N +  + S    GR  
Sbjct: 2   CPAMCHC------EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLP 54

Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
            L  L L  + +  I    F G   +  L+L +N++ EI    F  L  L+ L L  N+I
Sbjct: 55  HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114

Query: 888 IYISNRTFLSLTHLKVLQL-DHNRITSFAVWHLSSQIQSITLTSNPWSC 935
             +   +F  L  L  L L  +    +  +   +  ++  +L      C
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC 163

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 10/195 (5%)

Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-ILTFLADHALDGLNSLTVLN 275
           A C      +D +      +P +         EL L  N +    +D     L  L  L 
Sbjct: 4   AMCHCEGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN 335
           L  N L  I P  F  +  ++E+ L  N I  ++  +F  L QL  L+L +N+++   V 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--VM 118

Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
             +F  L+ L       +     +  +      L+   L             + + ++  
Sbjct: 119 PGSFEHLNSLTS-LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC---GAPSKVRDVQI 174

Query: 396 LIMSNNKLKRIESNS 410
             + +++ K    NS
Sbjct: 175 KDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 37/186 (19%), Positives = 80/186 (43%), Gaps = 26/186 (13%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV-LAPGIFNVLTQLIVLDLSNNE 328
             T ++ +   L  IP ++        E+ L +N +    + G+F  L  L+ L+L  N+
Sbjct: 9   EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
           LT    NA   +   + +   +  NK+ ++ + +F  L++L+ L+L +NQI  +   +F 
Sbjct: 66  LTGIEPNAFEGASHIQEL--QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123

Query: 389 SLSNLHTLIM---------------SNNKLKRIESNSL-----DSLTALSVLSLDNNELE 428
            L++L +L +                  + K +   +        +  + +  L ++E +
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

Query: 429 YIEENA 434
              EN+
Sbjct: 184 CSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 2/173 (1%)

Query: 418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
           + +      L+ I  +   ++T L   + N         +   L  L  L+L  N +T I
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTEL-LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537
              +      +  L+L EN I  IS  +F  L  L  LNL  N+I  V  G+F++ ++L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 538 AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
           ++ L  N       L      L   +++         + +  D+Q  D+  ++
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV-RDVQIKDLPHSE 181

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 422 LDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
           L   ++E ++   +          L+   L   P  L   +    L+   ++   +  + 
Sbjct: 4   LKPEQVEQLKL-IMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIE 61

Query: 482 LNSLHQLAGLRLTENNISNIS--KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
            N + +L  L L+ N +  +     + +K   L ILNL+ N+++            L  +
Sbjct: 62  EN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120

Query: 540 RLDGNYLTDIGG--------LFPKLPNLVWLN 563
            LDGN L+D           +  + P L+ L+
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432
            L+  Q+E + +   +   +     +    L+      L +     VL+  ++    +  
Sbjct: 3   ELKPEQVEQL-KLIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLR- 58

Query: 433 NALKNSTSLQDFHLNGNKLT---EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
              +N   L   +L+ N+L    ++  +++   +LK L+L  N +     L      +L 
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 490 GLRLTENNISNISKG-------VFEKLSVLTILN 516
            L L  N++S+  +        + E+   L  L+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 8e-07
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 6/148 (4%)

Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
            +      +   L +  L    P+L  Q+     +  +++    L   I   + +L+ L+
Sbjct: 15  IMSKRYDGSQQALDLKGL-RSDPDLVAQNI-DVVLNRRSSMAATL-RIIEENIPELLSLN 71

Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
           LSNN L      ++       L +LN++ N++            +L+ L L+ N +    
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

Query: 384 RNTFASLSNLHTLIMSNNKLKRIESNSL 411
           R+     + +  +     KL R++ + L
Sbjct: 132 RDQS---TYISAIRERFPKLLRLDGHEL 156

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 25/153 (16%)

Query: 318 QLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377
               LDL       +          +  VVLN   + M      I +++  L  L+L NN
Sbjct: 23  SQQALDLKGLRSDPD------LVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNN 75

Query: 378 QIESIH--RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
           ++  +    +      NL  L +S N+LK            L  L LD N L        
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS------- 128

Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
                        ++ T I  +      L  LD
Sbjct: 129 ---------DTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD--HALDGLNSLTVLNLSVN 279
              VL+  ++   +L       +  L  L L  N L  L D    +    +L +LNLS N
Sbjct: 43  IDVVLNRRSSMAATLRII-EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 101

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPG-------IFNVLTQLIVLD 323
            L +       +   L+E++L  NS++            I     +L+ LD
Sbjct: 102 ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
           R       L+   + +  +         ++L    +    +R    E +  L  L L  N
Sbjct: 19  RYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRII-EENIPELLSLNLSNN 75

Query: 886 KIIYISN--RTFLSLTHLKVLQLDHNRITSFA--VWHLSSQIQSITLTSNPWSCDCDFTE 941
           ++  + +         +LK+L L  N + S          +++ + L  N  S       
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

Query: 942 KFRDYL 947
            +   +
Sbjct: 136 TYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
           D ++  LD   +    S   +  + + ++    S +          + EL+ L L +NRL
Sbjct: 21  DGSQQALDLKGLR---SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 864 TEIRG--YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
             +       ++  NL+ L L  N++        +    L+ L LD N ++ 
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 10/257 (3%)

Query: 221 INLRVLDLSNNSFD---SLPAEGFSRLSRLQELYLQGNI-LTFLADHALDGLNSLTVLNL 276
             +  LDLS  +      +P+   + L  L  LY+ G   L      A+  L  L  L +
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
           +  N+    P+  +Q + L  +    N+++   P   + L  L+ +    N ++    + 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD- 167

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL-HLENNQIESIHRNTFASLSNLHT 395
              S      +        N+L   I      L +     +  +     +          
Sbjct: 168 ---SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
            I         +   +     L+ L L NN +       L     L   +++ N L    
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 456 KVLRNLHSLKTLDLGDN 472
               NL         +N
Sbjct: 285 PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 13/264 (4%)

Query: 437 NSTSLQDFHLNGNKLT---EIPKVLRNLHSLKTLDLGDNL-ITEINNLSLNSLHQLAGLR 492
            +  + +  L+G  L     IP  L NL  L  L +G    +      ++  L QL  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD-IGG 551
           +T  N+S        ++  L  L+ + N +      +  +  NLV I  DGN ++  I  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 552 LFPKLPNLV--WLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYF 609
            +     L          L           +L ++D+  N +    +      +      
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
            A ++   +L    +  ++  L L NN I    P        L  +++  N L       
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG----- 282

Query: 670 LRISPLPSHKNIPDFYIGENPFQC 693
             I    + +         N   C
Sbjct: 283 -EIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 32/259 (12%)

Query: 267 GLNSLTVLNLSVNNLVN---IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
               +  L+LS  NL     IP  L N            N++    P     LTQL  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE-SI 382
           +++  ++    +  +      LV L+ +YN ++         L  L  +  + N+I  +I
Sbjct: 108 ITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL--------------- 427
             +  +      ++ +S N+L      +  +L    V    N                  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 428 -------EYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-EIN 478
                     +   +  S +L    L  N++   +P+ L  L  L +L++  N +  EI 
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 479 NLSLNSLHQLAGLRLTENN 497
                +L +        N 
Sbjct: 286 --QGGNLQRFDVSAYANNK 302

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 26/235 (11%)

Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
           L +   +   ++ +++  T +  +         +  L        ++  EG   L+ L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLD--------GITTLSAFGTGVTTI--EGVQYLNNLIG 67

Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
           L L+ N +T LA        +   L+ +    V+    L +            +   +  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
                VL   +    + + L                    ++       D +   +L +L
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQ------------YLSIGNAQVSDLTPLANLSKL 175

Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
             L  ++N+I  I  +  ASL NL  + + NN++  +    L + + L +++L N
Sbjct: 176 TTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
             L +   +    +N+ +   +       +  +      +  +       L  LI L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
           +N++T+              +  N   N          K L        +   +  +   
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
               L      I + + L  + +                   +  +   L N + L    
Sbjct: 132 QV--LYLDLNQITNISPLAGLTNLQYL----------SIGNAQVSDLTPLANLSKLTTLK 179

Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQL 488
            + NK+++I   L +L +L  + L +N I++++ L+  ++L  +
Sbjct: 180 ADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
            + IA  K N  D+    DL  +  L      + +I       L+NL  L + +N++  +
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDL 78

Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
                     L+ ++        ++  +              +        L  L +L+ 
Sbjct: 79  APLK-----NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
           L L  N IT I+ L+  +  Q      +  N           LS LT L    NKI  + 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYL----SIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 527 AGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
                +  NL+ + L  N ++D+  L     NL  + ++
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 22/214 (10%)

Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
            L +   +  G + +T+   ++   L  +  L      ++ I     + L+ L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA 579
           N+I  +           + +  +             +  L   +     +          
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 580 DLQWLDIHGNQISELGNYF----------------EIESQLRLTYFDASSNKLTELTGNA 623
            L         IS L                     + +  +LT   A  NK+++++  A
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
              ++  + L NN IS V P       NL  V L
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANT--SNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 742 QFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRI 801
             L   +     L    +           N       ++   ++               +
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 802 PMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
              +    L  +   +       G   LQ L  +  + +         L +L  L+ DDN
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYL--SIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
           ++++I       L NL E++L+ N+I  +S     + ++L ++ L +
Sbjct: 184 KISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 5e-06
 Identities = 48/344 (13%), Positives = 104/344 (30%), Gaps = 29/344 (8%)

Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
           F+ E +SL+   ++     ++   +     S+  + L+ N +   A    S  +      
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLS--ENIASKK 59

Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
           +L + + S+     +  E    L  L +  L+   L  +         +     +   + 
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL---TQLIVLDLSNNELTEEWVNA-- 336
                 L+  +  L        +  +    +         L  +    N L    +    
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL---------ENNQIESIHRNTF 387
            TF     L  + +  N +                  L           +   S      
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 388 ASLSNLHTLIMSNNKLKR------IESNSLDSLTALSVLSLDNNELE-----YIEENALK 436
            S  NL  L +++  L        +++ S      L  L L  NE+E      ++    +
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNL 480
               L    LNGN+ +E   V+  +  + +   G   + E++++
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREVFST-RGRGELDELDDM 342

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 53/335 (15%), Positives = 104/335 (31%), Gaps = 16/335 (4%)

Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH----ALDGLNSLTVLN 275
           G +L++  ++     S+ A        ++E+ L GN +   A       +     L +  
Sbjct: 7   GKSLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL-TQLIVLDLSNNELTEEWV 334
            S      +  E+    R L +  L+   ++ +         T    L    ++ T    
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH 394
                +GL       IA        +   K+   L+ +    N++E+     +A     H
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
            L+ +   ++       + +  L +  L   +   + +      T L    L     +  
Sbjct: 186 RLLHTVKMVQNGIRP--EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN-----ISKGVFEKL 509
                 L+       G   +  ++  S      L  LRL  N I       +   + EK+
Sbjct: 244 NLRELGLNDCLLSARGAAAV--VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
             L  L L  N+    E    D    + + R  G 
Sbjct: 302 PDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 0.001
 Identities = 37/321 (11%), Positives = 83/321 (25%), Gaps = 20/321 (6%)

Query: 264 ALDGLNSLTVLNLSVNNL----VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQL 319
            L   +S+  + LS N +         E     +DL+     +     +   I   L  L
Sbjct: 26  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 85

Query: 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR-LQVLHLENNQ 378
           +   L   +L    ++   F    +  +++            +  +         +    
Sbjct: 86  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 145

Query: 379 IESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL---EYIEENAL 435
            E        +   L ++I   N+L+               L      +      E    
Sbjct: 146 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 205

Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE 495
                L           +         S   + L          L+   L          
Sbjct: 206 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-------AR 258

Query: 496 NNISNISKGVFEKLSVLTILNLASNKI-----QKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
              + +      +   L  L L  N+I     + ++    +   +L+ + L+GN  ++  
Sbjct: 259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 318

Query: 551 GLFPKLPNLVWLNISENLLEW 571
            +  ++  +        L E 
Sbjct: 319 DVVDEIREVFSTRGRGELDEL 339

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.002
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSL 464
           S++   +L + ++   + + +    L    S+++  L+GN +       + + + +   L
Sbjct: 4   SIEGK-SLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI 501
           +  +  D     + +    +L  L    L    +  +
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 862 RLTE---IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH 918
           +LT     +  ++      REL L+  KI  I N    +L     +    N I     + 
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
           L  +++++ + +N      +  ++    L     + + + ++  + 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 106

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
            L+    +  N  R  +E+ L+   I V+   +   L Q   +D S+NE+ +       F
Sbjct: 6   ELIEQAAQYTNAVR-DRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD----GF 59

Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS-LSNLHTLIM 398
             L RL  L +  N++ ++   + + L  L  L L NN +  +      + L +L  L +
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 399 SNNKLKRIESNSLDSLTALSVL-SLDNNELEYIE 431
             N +   +   L  +  +  +  LD  +++  E
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 153

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
           N+   ++  L G K+  I  +   L     +D  DN I +++      L +L  L +  N
Sbjct: 16  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN-SNLVAIRLDGNYLTDIGG---- 551
            I  I +G+ + L  LT L L +N + ++       +  +L  + +  N +T+       
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 552 LFPKLPNLVWLN 563
           +  K+P +  L+
Sbjct: 134 VIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 198 LTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNIL 257
           LT   +   A   ++N       +  R LDL       +     + L +   +    N +
Sbjct: 3   LTAELIEQAA--QYTN------AVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEI 53

Query: 258 TFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFN-VL 316
             L       L  L  L ++ N +  I   L     DL E+ L NNS+  L        L
Sbjct: 54  RKLDGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111

Query: 317 TQLIVLDLSNNELT-EEWVNAATFSGLHRLVVLN 349
             L  L +  N +T ++         + ++ VL+
Sbjct: 112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
           L +  I+  +A  + N      + L G  +  I  L   L     ++ S+N +   D   
Sbjct: 3   LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYF--DASSNKLTELTGNAIPHSVENLFLT 634
           +   L+ L ++ N+I  +G   +            + S  +L +L   A   S+  L + 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 635 NNLISKVQPY---TFFMKPNLTRVD 656
            N ++  + Y     +  P +  +D
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 12/155 (7%)

Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
           ++  L+E           + LD+ G +I  + N      Q      D S N++ +L G  
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFD--AIDFSDNEIRKLDGFP 60

Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
           +   ++ L + NN I ++        P+LT + L  N L            L     +  
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE----------LGDLDPLAS 110

Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLD 718
                        +   + Y +      P +  LD
Sbjct: 111 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
             + L  + +  ++    L       +        +  L       L +L  L +  + L
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
                +A  F+   RL  LN+++N +  L     + L   +++   N    S        
Sbjct: 69  RFVAPDAFHFT--PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALS 418
                   +   KL+      L  +   S
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS 920
             L  +   +   L  LR L +  + + +++   F     L  L L  N + S +   + 
Sbjct: 42  QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

Query: 921 SQIQSITLTS-NPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968
                  + S NP  C C      + + +     V +  +++C     +
Sbjct: 102 GLSLQELVLSGNPLHCSCALRW-LQRWEEEGLGGVPE-QKLQCHGQGPL 148

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 21/225 (9%)

Query: 299 YLQNNSINVLAP--GIF--NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
            L + +I V  P   IF  +   + I  +L    +T+      T + L+ +  +    + 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV----TQNELNSIDQIIANNSD 57

Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
           +  +     + L  +  L L  N++  I     A+L NL  L +  NK+K + S      
Sbjct: 58  IKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKK 113

Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
                           + N L +   L+  +L  NK+T+I  + R           + + 
Sbjct: 114 LKSL----SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 169

Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
             +    L  L +L  L L++N+IS++       L  L +L L S
Sbjct: 170 DIVP---LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 26/205 (12%)

Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
           Q+  IN +       L + +   L    +T+      + + L ++  L      +  +D 
Sbjct: 4   QDTPINQIFTD--TALAEKMKTVLGKTNVTDT----VSQTDLDQVTTLQADRLGIKSIDG 57

Query: 361 SIFKDLYRLQVLHLENNQIESIH----------------RNTFASLSNLHTLIMSNNKLK 404
              + L  L  ++  NNQ+  I                 +    +     T +       
Sbjct: 58  --VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 115

Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
              ++        ++  L+ +     + +AL   TSLQ  + + N++T++   L NL +L
Sbjct: 116 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTL 174

Query: 465 KTLDLGDNLITEINNLS-LNSLHQL 488
           + LD+  N +++I+ L+ L +L  L
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 427 LEYIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LN 483
           +   EE     +T  +   L+G    + ++   L  L + K L L  N I +I++LS + 
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70

Query: 484 SLHQL 488
           +L  L
Sbjct: 71  NLRIL 75

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 25/297 (8%)

Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL-V 282
           + LDL+  +              +       + +             +  ++LS + + V
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342
           +    + +Q   L+ + L+   ++          + L+ L+LS      E+      S  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
            RL  LN+++                      E +   ++   +        +    N +
Sbjct: 121 SRLDELNLSWCFD-----------------FTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL--TEIPKVLRN 460
              + +        + +   D+  L+            LQ   L+       E    L  
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
           + +LKTL +   +      L   +L     L++  ++ + I++          I  +
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIWGI 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1269
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.97
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.24

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-32  Score=267.98  Aligned_cols=139  Identities=40%  Similarity=0.770  Sum_probs=131.0

Q ss_pred             CCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHH
Q psy5670        1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYE 1160 (1269)
Q Consensus      1081 ~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e 1160 (1269)
                      .++.|||||||+++|++||.+.|++.||++.+||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|.||++|
T Consensus         2 ~~~~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E   81 (149)
T d1fyxa_           2 RNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCCEEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHH
Confidence            47899999999999999999999999998778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-CeEEEEEeCCCCCCCCC---HHHHHHHhcCceEEcCC-----cchHHHHHHhCCC
Q psy5670        1161 FKSAHHQVLRGK-KRLIVILLGEVPQKDLD---PDIRLYLKSNTYLQWGD-----KLFWEKLKFALPD 1219 (1269)
Q Consensus      1161 ~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~~ 1219 (1269)
                      ++.|++++++++ .++|||++++++...+|   ..++.++++++|++|++     ++||+|||+|||+
T Consensus        82 ~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~~~~~~Fw~~L~~al~~  149 (149)
T d1fyxa_          82 LDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS  149 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSEECCSSGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCceEEEEEeccCchhhcchhhHHHHHHhccCCeEECCCCcccchHHHHHHHHHcCC
Confidence            999999998877 99999999999998887   58999999999999953     5899999999984

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.7e-31  Score=263.01  Aligned_cols=144  Identities=39%  Similarity=0.711  Sum_probs=132.8

Q ss_pred             cccCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhh
Q psy5670        1077 EMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEW 1156 (1269)
Q Consensus      1077 ~~~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w 1156 (1269)
                      ++.+++++|||||||+++|++||.++|.+.||+  .||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|.|
T Consensus         5 ~~~~~~~~yDvFisys~~D~~~v~~~L~~~Le~--~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w   82 (161)
T d1fyva_           5 EELQRNLQFHAFISYSGHDSFWVKNELLPNLEK--EGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEW   82 (161)
T ss_dssp             TTSSSCCCEEEEEECCGGGHHHHHHTHHHHHHT--TTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTS
T ss_pred             hHcCCCCeeEEEEecChhHHHHHHHHHHHHHHh--CCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChH
Confidence            456678999999999999999999999999995  599999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCC---HHHHHHHhcCceEEcCC-----cchHHHHHHhCCCCCC
Q psy5670        1157 CRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLD---PDIRLYLKSNTYLQWGD-----KLFWEKLKFALPDVPN 1222 (1269)
Q Consensus      1157 ~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~~~~~ 1222 (1269)
                      |++|++.|++++++++ .++|+|++++++...+|   ..|+.++++++|++|++     ++||++||+|||.+-.
T Consensus        83 ~~~E~~~a~~~~~~~~~~~lIpV~l~~~~~~~~~~~~~~L~~~~~~~~~l~W~~~~~~~~~FW~~L~~aL~~~l~  157 (161)
T d1fyva_          83 CHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINIKLT  157 (161)
T ss_dssp             HHHHHHTTSCCCSCSSCSSEEEEESSCCCGGGSCTTCHHHHHHHHTCCCEECCSSGGGSSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHcCCCceeEEEEecCchhhcchhHHHHHHHHhcCCeEeCCCCcchhHHHHHHHHHHCCCCCc
Confidence            9999999999999887 89999999999887776   47899999999999964     4799999999996533

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=260.95  Aligned_cols=217  Identities=21%  Similarity=0.267  Sum_probs=186.2

Q ss_pred             cccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCC
Q psy5670         603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIP  682 (1269)
Q Consensus       603 ~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~  682 (1269)
                      ...+.++|.++++++.++ ..+|+++++|+|++|+|+++.+..|.++++|++|+|++|+|+.++..+       ..+   
T Consensus         9 ~~~~~~v~C~~~~L~~iP-~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~-------~l~---   77 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TLP---   77 (266)
T ss_dssp             STTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-------CCT---
T ss_pred             cCCCeEEEccCCCCCeeC-cCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccc-------ccc---
Confidence            345667889999999875 357889999999999999998889999999999999999988653210       011   


Q ss_pred             ceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCC
Q psy5670         683 DFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDA  762 (1269)
Q Consensus       683 ~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  762 (1269)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (266)
T d1p9ag_          78 --------------------------------------------------------------------------------   77 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccc
Q psy5670         763 CDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI  842 (1269)
Q Consensus       763 ~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i  842 (1269)
                                                               .++.|++++|+++.++. .|.++++|+.|++++|.+..+
T Consensus        78 -----------------------------------------~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          78 -----------------------------------------VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             -----------------------------------------TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCC
T ss_pred             -----------------------------------------ccccccccccccccccc-cccccccccccccccccccee
Confidence                                                     23566777777766543 577788999999999999999


Q ss_pred             ccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccC
Q psy5670         843 HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSS  921 (1269)
Q Consensus       843 ~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~  921 (1269)
                      ....|..+.+++.|++++|.++.+++..|.++++|+.|++++|+|+.++++.|..+++|++|+|++|+|+.+++. +.++
T Consensus       116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~  195 (266)
T d1p9ag_         116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (266)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             eccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 6889


Q ss_pred             CccEEEeeCCcccccCCcHHHHHHHHHhccCC
Q psy5670         922 QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSS  953 (1269)
Q Consensus       922 ~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~  953 (1269)
                      +|+.|+|+||||.|||++ .||+.|++++...
T Consensus       196 ~L~~L~L~~Np~~CdC~~-~~l~~wl~~~~~~  226 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCEI-LYFRRWLQDNAEN  226 (266)
T ss_dssp             CCSEEECCSCCBCCSGGG-HHHHHHHHHTGGG
T ss_pred             CCCEEEecCCCCCCCcch-HHHHHHHHhcccc
Confidence            999999999999999996 7999999875433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.3e-24  Score=254.32  Aligned_cols=343  Identities=28%  Similarity=0.381  Sum_probs=164.4

Q ss_pred             hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670         164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR  243 (1269)
Q Consensus       164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  243 (1269)
                      ..+.+|++|+++++.|+.+..  +..+++|++|+|++|+++++++  +      +.+++|++|++++|.++.+++  +++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~g--l~~L~nL~~L~Ls~N~l~~l~~--l------~~L~~L~~L~L~~n~i~~i~~--l~~  108 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--L------KNLTKLVDILMNNNQIADITP--LAN  108 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--G------TTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HHhCCCCEEECCCCCCCCccc--cccCCCCCEEeCcCCcCCCCcc--c------cCCcccccccccccccccccc--ccc
Confidence            345667777777776666532  4556666666666666655432  2      224556666666665555432  555


Q ss_pred             CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670         244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD  323 (1269)
Q Consensus       244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  323 (1269)
                      +++|+.|+++++.+++...  ......+..+....+.+..+....................     ...+...+......
T Consensus       109 l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  181 (384)
T d2omza2         109 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLD  181 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEE
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hhhhcccccccccc
Confidence            5555555555555554432  2233444444444444333322211111111111111100     11122233333333


Q ss_pred             CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670         324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL  403 (1269)
Q Consensus       324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  403 (1269)
                      ...+....    ...+..                        +++++.+++++|.++.+.+  +..+++|+.|++++|.+
T Consensus       182 ~~~~~~~~----~~~~~~------------------------l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l  231 (384)
T d2omza2         182 ISSNKVSD----ISVLAK------------------------LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL  231 (384)
T ss_dssp             CCSSCCCC----CGGGGG------------------------CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             cccccccc----cccccc------------------------ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCC
Confidence            33332221    222334                        4444444444444444432  23334455555555544


Q ss_pred             cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhh
Q psy5670         404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN  483 (1269)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  483 (1269)
                      +.+.  .+..+++|+.|++++|.+.++.+  +..+++|++|+++++.++.++. +..++.++.++++.|.++++.  .+.
T Consensus       232 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~--~~~  304 (384)
T d2omza2         232 KDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PIS  304 (384)
T ss_dssp             CCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGG
T ss_pred             CCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc-ccccccccccccccccccccc--ccc
Confidence            4432  23444555555555555544432  4445555555555555555442 444555555555555555432  244


Q ss_pred             ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEE
Q psy5670         484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN  563 (1269)
Q Consensus       484 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  563 (1269)
                      .+++++.|++++|++..+++  +..+++|++|++++|+++++.  .+.++++|++|++++|+++++++ +.++++|+.|+
T Consensus       305 ~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~  379 (384)
T d2omza2         305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLG  379 (384)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred             hhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEee
Confidence            55555555555555555432  455556666666666555543  35555666666666666655543 45555666666


Q ss_pred             ccCC
Q psy5670         564 ISEN  567 (1269)
Q Consensus       564 Ls~n  567 (1269)
                      |++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.2e-24  Score=254.49  Aligned_cols=356  Identities=23%  Similarity=0.324  Sum_probs=228.4

Q ss_pred             EeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEE
Q psy5670         118 SVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLN  197 (1269)
Q Consensus       118 ~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~  197 (1269)
                      .+..+.++...  ....+.+|+.|+++++.+.      .+  +.+ ..+++|++|++++|.|+++++  |+++++|++|+
T Consensus        28 ~l~~~~~~~~~--~~~~l~~l~~L~l~~~~I~------~l--~gl-~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~   94 (384)
T d2omza2          28 VLGKTNVTDTV--SQTDLDQVTTLQADRLGIK------SI--DGV-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL   94 (384)
T ss_dssp             HTTCSSTTSEE--CHHHHTTCCEEECCSSCCC------CC--TTG-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HhCCCCCCCcc--CHHHhCCCCEEECCCCCCC------Cc--ccc-ccCCCCCEEeCcCCcCCCCcc--ccCCccccccc
Confidence            44444554422  1345678999999766542      22  346 789999999999999999986  89999999999


Q ss_pred             CCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEcc
Q psy5670         198 LTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS  277 (1269)
Q Consensus       198 Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  277 (1269)
                      +++|++.++.+        +..+++|+.|+++++.++.+..  ......+..+....+.+....................
T Consensus        95 L~~n~i~~i~~--------l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (384)
T d2omza2          95 MNNNQIADITP--------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ  164 (384)
T ss_dssp             CCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES
T ss_pred             ccccccccccc--------cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            99999987653        2347899999999999988764  4556788888888887776655443333333333332


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcc
Q psy5670         278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK  357 (1269)
Q Consensus       278 ~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  357 (1269)
                      ...+     ..+.............+....  ...+..+++++.+++++|.+.+  +  ..+...++|+.|++++|.++.
T Consensus       165 ~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~--~--~~~~~~~~L~~L~l~~n~l~~  233 (384)
T d2omza2         165 VTDL-----KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I--TPLGILTNLDELSLNGNQLKD  233 (384)
T ss_dssp             CCCC-----GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC--C--GGGGGCTTCCEEECCSSCCCC
T ss_pred             cchh-----hhhcccccccccccccccccc--ccccccccccceeeccCCccCC--C--CcccccCCCCEEECCCCCCCC
Confidence            2222     223445555666666655443  3446788999999999998876  2  235566788888888888776


Q ss_pred             cCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcC
Q psy5670         358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN  437 (1269)
Q Consensus       358 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  437 (1269)
                      ++  .+..+++|+.|++++|.++.+++  +..+++|+.|+++++++++..+  +..++.++.+.++.|.+.++.  .+..
T Consensus       234 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~  305 (384)
T d2omza2         234 IG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISN  305 (384)
T ss_dssp             CG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGG
T ss_pred             cc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccccccccccccccccccccc--ccch
Confidence            53  36677788888888877776653  5666777777777776665532  455566666666666655442  2445


Q ss_pred             CCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEc
Q psy5670         438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL  517 (1269)
Q Consensus       438 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L  517 (1269)
                      +++++.|++++|+++.++. +..+++|++|++++|+++++.  .+.++++|++|++++|+++.+++  +.++++|+.|+|
T Consensus       306 ~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             hcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            5555555555555555542 445555555555555555432  24445555555555555544432  444445555554


Q ss_pred             CCC
Q psy5670         518 ASN  520 (1269)
Q Consensus       518 s~n  520 (1269)
                      ++|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=250.90  Aligned_cols=255  Identities=25%  Similarity=0.377  Sum_probs=208.6

Q ss_pred             cEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEe
Q psy5670         607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYI  686 (1269)
Q Consensus       607 ~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l  686 (1269)
                      ..++.++++++.++. .+|.++++|+|++|+|+.+.+..|.++++|+.||+++|+|..++...+.     ....+..+.+
T Consensus        14 ~~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~-----~~~~~~~l~~   87 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-----GLALLEQLDL   87 (284)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEEC
T ss_pred             eEEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccc-----cccccccccc
Confidence            356677777887754 5788999999999999999999999999999999999999987765431     1111111111


Q ss_pred             cCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCccc
Q psy5670         687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCE  766 (1269)
Q Consensus       687 ~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (1269)
                      ..+.                                           .+..+...                         
T Consensus        88 ~~~~-------------------------------------------~~~~l~~~-------------------------   99 (284)
T d1ozna_          88 SDNA-------------------------------------------QLRSVDPA-------------------------   99 (284)
T ss_dssp             CSCT-------------------------------------------TCCCCCTT-------------------------
T ss_pred             cccc-------------------------------------------ccccccch-------------------------
Confidence            1000                                           00000000                         


Q ss_pred             CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670         767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT  846 (1269)
Q Consensus       767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~  846 (1269)
                                               .+..+      .++++|++++|.+..++...|....+|+.+++++|+|+.|++.+
T Consensus       100 -------------------------~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_         100 -------------------------TFHGL------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             -------------------------TTTTC------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -------------------------hhccc------ccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence                                     00001      34689999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670         847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ  924 (1269)
Q Consensus       847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~  924 (1269)
                      |+.+++|+.|+|++|+++.+++.+|.++++|+++++++|+++.+++..|.++++|++|++++|+++++++. | ..++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 7 889999


Q ss_pred             EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670         925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      +|++++|||.|||+. .|+..|+++...   ...++.|..|...+|
T Consensus       229 ~L~l~~N~l~C~C~~-~~l~~~l~~~~~---~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         229 YLRLNDNPWVCDCRA-RPLWAWLQKFRG---SSSEVPCSLPQRLAG  270 (284)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHCCS---EECCCBEEESGGGTT
T ss_pred             EEEecCCCCCCCccc-hHHHHHHHhCcC---CCCceEeCCchHHcC
Confidence            999999999999996 799999987533   345789999998865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.1e-24  Score=238.42  Aligned_cols=255  Identities=22%  Similarity=0.322  Sum_probs=173.7

Q ss_pred             CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670          30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ  109 (1269)
Q Consensus        30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~  109 (1269)
                      ..||..|+|...                   .+.|.+.+++++|.     .+ |..+++|+|++|.    .+.+++.+|.
T Consensus         2 ~~~p~~c~c~~~-------------------~~~C~~~~L~~lP~-----~l-~~~l~~L~Ls~N~----i~~l~~~~f~   52 (305)
T d1xkua_           2 PVCPFRCQCHLR-------------------VVQCSDLGLEKVPK-----DL-PPDTALLDLQNNK----ITEIKDGDFK   52 (305)
T ss_dssp             CCCCTTCEEETT-------------------EEECTTSCCCSCCC-----SC-CTTCCEEECCSSC----CCCBCTTTTT
T ss_pred             CCCCCCCEecCC-------------------EEEecCCCCCccCC-----CC-CCCCCEEECcCCc----CCCcChhHhh
Confidence            479999999742                   57898888988872     22 5678899999888    6778888888


Q ss_pred             CCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCC
Q psy5670         110 TLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP  189 (1269)
Q Consensus       110 ~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~  189 (1269)
                      ++++|++|++++|.+..+++.+|.++++|+.|+++++++.      .+ +..   ....++.|++++|.+..++...|..
T Consensus        53 ~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~------~l-~~~---~~~~l~~L~~~~n~l~~l~~~~~~~  122 (305)
T d1xkua_          53 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK------EL-PEK---MPKTLQELRVHENEITKVRKSVFNG  122 (305)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS------BC-CSS---CCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred             ccccccccccccccccccchhhhhCCCccCEecccCCccC------cC-ccc---hhhhhhhhhccccchhhhhhhhhhc
Confidence            8889999999988888888878888888888888765431      22 221   2356778888888887777776777


Q ss_pred             CCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCC
Q psy5670         190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN  269 (1269)
Q Consensus       190 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  269 (1269)
                      ...++.++...+.........    .....+++|+.+++++|.++.++..   .+++|++|++++|......+..|.+++
T Consensus       123 ~~~~~~l~~~~n~~~~~~~~~----~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~  195 (305)
T d1xkua_         123 LNQMIVVELGTNPLKSSGIEN----GAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLN  195 (305)
T ss_dssp             CTTCCEEECCSSCCCGGGBCT----TGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             cccccccccccccccccCCCc----cccccccccCccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccc
Confidence            777777777776543322111    0122356677777777777666543   245667777777766666666666666


Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCc
Q psy5670         270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE  331 (1269)
Q Consensus       270 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  331 (1269)
                      .+++|++++|.+..+++..|.++++|++|+|++|.++.++ ..|.++++|++|++++|+++.
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccccccccceeeecccccccccc-cccccccCCCEEECCCCccCc
Confidence            7777777666666666666666666666666666666553 345566666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.1e-24  Score=227.34  Aligned_cols=169  Identities=29%  Similarity=0.530  Sum_probs=123.8

Q ss_pred             CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCC-cCCCcCCCCCCccEEEccCcCccccccccc
Q psy5670         769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPV-VGSHSFIGRKKLQILFLNSSHVETIHNKTF  847 (1269)
Q Consensus       769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~-l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f  847 (1269)
                      ||..|+|.      ...|+|++.+++++ |+.+|.++++|+|++|+|+. ++...|.++++|+.|+|++|++..+.+++|
T Consensus         2 CP~~C~C~------~~~v~Cs~~~L~~i-P~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           2 CPAMCHCE------GTTVDCTGRGLKEI-PRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCTTSEEE------TTEEECTTSCCSSC-CSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCCCEEc------CCEEEEeCCCcCcc-CCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc
Confidence            89999995      34799999999998 99999888888888888864 566666666666666666666666666666


Q ss_pred             cCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecccccCCccEEE
Q psy5670         848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSIT  927 (1269)
Q Consensus       848 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~l~  927 (1269)
                      .++++|+.|+|++|+|+.+++++|.++++|++|+|++|+|+.|++++|.++                      ++|++++
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l----------------------~~L~~l~  132 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL----------------------NSLTSLN  132 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC----------------------TTCCEEE
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCC----------------------ccccccc
Confidence            666666666666666666666666666666666666666666665555544                      5567788


Q ss_pred             eeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670         928 LTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       928 l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      |++|||.|+|+. .|+..|++....   ....++|..|...++
T Consensus       133 L~~N~~~~~~~~-~~~~~~l~~~~l---~~~~~~c~~p~~l~~  171 (192)
T d1w8aa_         133 LASNPFNCNCHL-AWFAEWLRKKSL---NGGAARCGAPSKVRD  171 (192)
T ss_dssp             CTTCCBCCSGGG-HHHHHHHHHHCC---SGGGCBBCSSTTTTT
T ss_pred             ccccccccccch-HHHhhhhhhhcc---cCCCeEeCCChhhcC
Confidence            889999999996 799999987532   346789999988755

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.4e-23  Score=230.39  Aligned_cols=247  Identities=27%  Similarity=0.458  Sum_probs=153.3

Q ss_pred             cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670         222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ  301 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  301 (1269)
                      ++++|+|++|+++.+++.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|+++.+|...   ...++.|.+.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhhhhhhcc
Confidence            4566666666666666555666666666666666666666666666666666666666666666433   3456666666


Q ss_pred             CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670         302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES  381 (1269)
Q Consensus       302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  381 (1269)
                      +|.+..+.+..+.....+..++...+.......                        ....+..+++|+.+++++|.+..
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~------------------------~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI------------------------ENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB------------------------CTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCC------------------------CccccccccccCccccccCCccc
Confidence            666666655555555555666555554332111                        12234445555555555555555


Q ss_pred             cccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCC
Q psy5670         382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL  461 (1269)
Q Consensus       382 i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  461 (1269)
                      ++..   .+++|+.|++++|......+..|.+++.++.|++++|.+.++.+..+.++++|++|+|++|+++.+|.++..+
T Consensus       165 l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l  241 (305)
T d1xkua_         165 IPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH  241 (305)
T ss_dssp             CCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred             cCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            5432   2356666667666666666666677777777777777777777777777777777888777777777777777


Q ss_pred             CCCcEEECCCCCCCccChhhhh------ccccCCeeeccCCcC
Q psy5670         462 HSLKTLDLGDNLITEINNLSLN------SLHQLAGLRLTENNI  498 (1269)
Q Consensus       462 ~~L~~L~Ls~n~i~~~~~~~~~------~l~~L~~L~Ls~n~l  498 (1269)
                      ++|++|++++|+|+.+....|.      ...+|+.|+|++|++
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            7888888888777776554442      233444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-23  Score=231.23  Aligned_cols=238  Identities=25%  Similarity=0.353  Sum_probs=148.6

Q ss_pred             CCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccC
Q psy5670          31 QAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQT  110 (1269)
Q Consensus        31 ~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~  110 (1269)
                      +||..|.|..                ..++.|.|...+++.+|.      ..|..+++|+|++|.    .+.+++.+|.+
T Consensus         1 ~cp~~C~C~~----------------~~~~~v~c~~~~L~~iP~------~ip~~~~~L~Ls~N~----i~~i~~~~f~~   54 (284)
T d1ozna_           1 PCPGACVCYN----------------EPKVTTSCPQQGLQAVPV------GIPAASQRIFLHGNR----ISHVPAASFRA   54 (284)
T ss_dssp             CCCTTCEEEC----------------SSSCEEECCSSCCSSCCT------TCCTTCSEEECTTSC----CCEECTTTTTT
T ss_pred             CcCCCCEEcC----------------CCCeEEEcCCCCCCccCC------CCCCCCCEEECcCCc----CCCCCHHHhhc
Confidence            5999999973                335678999888888872      235667888888888    56777778888


Q ss_pred             CcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCC
Q psy5670         111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPL  190 (1269)
Q Consensus       111 l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  190 (1269)
                      +++|++|+++++++..++...+.++..++.+.....+     ....+.+..| .++++|++|++++|.+..++...+...
T Consensus        55 l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~-----~~~~l~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~  128 (284)
T d1ozna_          55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-----QLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGL  128 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-----TCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccc-----ccccccchhh-cccccCCEEecCCcccccccccccchh
Confidence            8888888888888887777777777777766653221     1123445555 666666666666666665555555555


Q ss_pred             CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670         191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS  270 (1269)
Q Consensus       191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  270 (1269)
                      ++|+.+++++|+++.+++..|..      +++|+.|++++|+++.+++.+|.++++|+.+++++|.++++.+..|.++++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRD------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccchhhhccccccccChhHhcc------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence            66666666666655555444432      345555555555555555555555555555555555555555555555555


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc
Q psy5670         271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN  306 (1269)
Q Consensus       271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  306 (1269)
                      |++|++++|++..+++..|..+++|++|++++|.+.
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCC
Confidence            555555555555555555555555555555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=2.1e-22  Score=227.92  Aligned_cols=291  Identities=19%  Similarity=0.202  Sum_probs=178.7

Q ss_pred             hhHHHHHHHhhhhhhhccccCCCCCCCc--ccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCcccccccccee
Q psy5670          10 ITVLISALGLVSASISKALRYQAPDECK--WFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTV   87 (1269)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~cp~~C~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~   87 (1269)
                      ..+|+.|...+......++|+...|||.  |.||+|++.                                  ....+|+
T Consensus         8 ~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~----------------------------------~~~~~v~   53 (313)
T d1ogqa_           8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD----------------------------------TQTYRVN   53 (313)
T ss_dssp             HHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCS----------------------------------SSCCCEE
T ss_pred             HHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCC----------------------------------CCcEEEE
Confidence            4578888876655545667888899995  988766531                                  0124688


Q ss_pred             EEEEEeCCceeeccCCCchhccCCcccceeEecc-ccCC-CCChhhccCCccCceeecccccCCCCccceeccchhhhhc
Q psy5670          88 RLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEF-CKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE  165 (1269)
Q Consensus        88 ~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~-~~i~-~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~  165 (1269)
                      .|+|+++.+.- ...+| .+++++++|++|+|++ |.+. .+|+ .|+++++|++|+|++++.      ..+.+..+ .+
T Consensus        54 ~L~L~~~~l~g-~~~lp-~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l------~~~~~~~~-~~  123 (313)
T d1ogqa_          54 NLDLSGLNLPK-PYPIP-SSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNV------SGAIPDFL-SQ  123 (313)
T ss_dssp             EEEEECCCCSS-CEECC-GGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECC------EEECCGGG-GG
T ss_pred             EEECCCCCCCC-CCCCC-hHHhcCcccccccccccccccccccc-ccccccccchhhhccccc------cccccccc-cc
Confidence            99999987310 01244 4788888888888886 5664 4544 577777777777765543      23344455 67


Q ss_pred             CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670         166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS  245 (1269)
Q Consensus       166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  245 (1269)
                      +.+|+++++++|.+....+..|..+++|+++++++|.+.+..+..+..+     ...++.+++++|+++...+..+..+.
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l-----~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-----SKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----CTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            7777777777776665444445677777777777776665444333321     12236666666666665555555544


Q ss_pred             CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECc
Q psy5670         246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS  325 (1269)
Q Consensus       246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  325 (1269)
                      .+ .+++.++...+..+..+..+++|+.+++++|.+...++. +..+++|+.|+|++|++++..|..|+++++|++|+|+
T Consensus       199 ~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         199 LA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            33 566666666666666666666666666666665554432 4556666666666666665555556666666666666


Q ss_pred             CCCCCccccCcccccCCCCccEEEcCCCC
Q psy5670         326 NNELTEEWVNAATFSGLHRLVVLNIAYNK  354 (1269)
Q Consensus       326 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~  354 (1269)
                      +|++++. +  ..+..+++|+.+++++|+
T Consensus       277 ~N~l~g~-i--P~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         277 FNNLCGE-I--PQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEEEEE-C--CCSTTGGGSCGGGTCSSS
T ss_pred             CCccccc-C--CCcccCCCCCHHHhCCCc
Confidence            6666542 1  123445555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.6e-22  Score=217.76  Aligned_cols=185  Identities=23%  Similarity=0.289  Sum_probs=122.2

Q ss_pred             CCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670         488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN  567 (1269)
Q Consensus       488 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  567 (1269)
                      ++.|+|++|.++.++...|.++++|++|+|++|+|+.++.  +..+++|+.|+|++|+++..+..+..+++|+.|++++|
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            4444444444444444445555555555555555554432  33455566666666666555555556666666666655


Q ss_pred             cCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCc
Q psy5670         568 LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYT  645 (1269)
Q Consensus       568 ~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~  645 (1269)
                      .+..+...                       ....+.+++.|++++|.++.+++..+.  .+++.|++++|+++++.+..
T Consensus       111 ~~~~~~~~-----------------------~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_         111 RLTSLPLG-----------------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             CCCCCCSS-----------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             ccceeecc-----------------------ccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence            55432211                       112344566666666666666544332  47888888999998888888


Q ss_pred             cCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhh
Q psy5670         646 FFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY  703 (1269)
Q Consensus       646 f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~  703 (1269)
                      |..+++|+.|||++|+|+.++...+      ...+|+.+++++|||.|||.+.|+..|
T Consensus       168 ~~~l~~L~~L~Ls~N~L~~lp~~~~------~~~~L~~L~L~~Np~~CdC~~~~l~~w  219 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWLCNCEILYFRRW  219 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred             cccccccceeecccCCCcccChhHC------CCCCCCEEEecCCCCCCCcchHHHHHH
Confidence            9999999999999999999987655      356788999999999999999998865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=6.8e-21  Score=215.39  Aligned_cols=247  Identities=23%  Similarity=0.291  Sum_probs=145.3

Q ss_pred             CCCCEEEccCCCCccc--chhhhcCCCCCcEEEccC-CCCC-CCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCC
Q psy5670         245 SRLQELYLQGNILTFL--ADHALDGLNSLTVLNLSV-NNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLI  320 (1269)
Q Consensus       245 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~-n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  320 (1269)
                      .+++.|+|+++.+.+.  .|..++++++|++|+|++ |++. .+|+ .|.++++|++|+|++|++.++.+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-ccccccccchhhhccccccccccccccchhhhc
Confidence            3577788888777653  346677778888888875 5665 4544 356777777777777777777777677777777


Q ss_pred             EEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCC-cEEEccCCcccccccccccCCCCCcEEEcc
Q psy5670         321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL-QVLHLENNQIESIHRNTFASLSNLHTLIMS  399 (1269)
Q Consensus       321 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  399 (1269)
                      .+++++|.+..  ..+..+.++++|+.+++++|.+.+..+..+..+..+ +.+++++|+++...+..+..+.. ..++++
T Consensus       129 ~l~l~~N~~~~--~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLS  205 (313)
T ss_dssp             EEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECC
T ss_pred             ccccccccccc--cCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            77777776654  234556666667777776666665555545555443 55666666665555444444432 245555


Q ss_pred             CCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-CchhhhcCCCCCcEEECCCCCCCccC
Q psy5670         400 NNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEIN  478 (1269)
Q Consensus       400 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~  478 (1269)
                      .+...+..+..+..+++|+.+++++|.+.+..+ .+..+++|+.|++++|+++ .+|..+..+++|++|+|++|++++..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            555555555555555555555555555544332 3444555555555555554 45555555555555555555555433


Q ss_pred             hhhhhccccCCeeeccCCc
Q psy5670         479 NLSLNSLHQLAGLRLTENN  497 (1269)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~n~  497 (1269)
                      | .+..+++|+.+++++|+
T Consensus       285 P-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         285 P-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-CSTTGGGSCGGGTCSSS
T ss_pred             C-CcccCCCCCHHHhCCCc
Confidence            3 23344444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=187.67  Aligned_cols=117  Identities=18%  Similarity=0.353  Sum_probs=73.0

Q ss_pred             CCCEEeCCCC-CCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEee
Q psy5670         852 ELIILRLDDN-RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLT  929 (1269)
Q Consensus       852 ~L~~L~L~~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~  929 (1269)
                      +|+.|+|++| .|+.+++.+|.++++|+.|+|++|+|++|++++|..+++|++|+|++|+|+++++. |...+++.|+|+
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccC
Confidence            3444444332 24444444455555555555555555555555555555555555555555555554 433457889999


Q ss_pred             CCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670         930 SNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF  970 (1269)
Q Consensus       930 ~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~  970 (1269)
                      +|||.|||++ .||..|++.....+. ..++.|.+|..+++
T Consensus       112 ~Np~~C~C~~-~~l~~~~~~~~~~~~-~~~~~C~~p~~l~~  150 (156)
T d2ifga3         112 GNPLHCSCAL-RWLQRWEEEGLGGVP-EQKLQCHGQGPLAH  150 (156)
T ss_dssp             SSCCCCCGGG-HHHHHHHHTTCSSCG-GGCCCCSSSSCSSC
T ss_pred             CCcccCCchH-HHHHHHHHhccCccC-cCCcEECcChHHCc
Confidence            9999999996 799999987655553 47899999987744

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=6.8e-17  Score=185.29  Aligned_cols=281  Identities=24%  Similarity=0.338  Sum_probs=119.2

Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEE
Q psy5670         270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN  349 (1269)
Q Consensus       270 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  349 (1269)
                      +|++|+|+++.++.+|+    .+++|++|++++|.++.++.    .+.+|+.|++++|.++.  +.  .+  .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~--l~--~l--p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LS--DL--PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CC--SC--CTTCCEEE
T ss_pred             CCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccch--hh--hh--cccccccc
Confidence            34455555555554442    13445555555555544421    12345555555554433  11  01  12355555


Q ss_pred             cCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCc
Q psy5670         350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY  429 (1269)
Q Consensus       350 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  429 (1269)
                      +++|.+..++.  ++.+++|++|+++++.+...+.    ....+..+.+..+.....  ..+..++.++.+.+++|....
T Consensus       105 L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccccc--ccccccccceecccccccccc
Confidence            55555554432  3345555555555555443332    123444444444333221  223444555555555554443


Q ss_pred             cChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCC
Q psy5670         430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL  509 (1269)
Q Consensus       430 ~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l  509 (1269)
                      ...    .....+.+...++.+..++. +..++.|+.+++++|....+..    ...++..+.+..+.+...+.    ..
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~----~~~~l~~~~~~~~~~~~~~~----~~  243 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LP  243 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CC
T ss_pred             ccc----cccccccccccccccccccc-cccccccccccccccccccccc----cccccccccccccccccccc----cc
Confidence            321    11223344444444444432 3345555555555554443321    22344555555555433321    22


Q ss_pred             CCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCC
Q psy5670         510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGN  589 (1269)
Q Consensus       510 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n  589 (1269)
                      ..+...++..+.+.++..    -.......++..+.+..++.   .+++|++|++++|+++.++.  .+++|+.|++++|
T Consensus       244 ~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N  314 (353)
T d1jl5a_         244 QSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPA--LPPRLERLIASFN  314 (353)
T ss_dssp             TTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred             cccccccccccccccccc----ccchhcccccccCccccccc---cCCCCCEEECCCCccCcccc--ccCCCCEEECCCC
Confidence            344445554444433321    01223344444444443322   23344555555554443331  1223444444444


Q ss_pred             Ccccc
Q psy5670         590 QISEL  594 (1269)
Q Consensus       590 ~l~~~  594 (1269)
                      +|+++
T Consensus       315 ~L~~l  319 (353)
T d1jl5a_         315 HLAEV  319 (353)
T ss_dssp             CCSCC
T ss_pred             cCCcc
Confidence            44443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=9.6e-17  Score=184.03  Aligned_cols=137  Identities=28%  Similarity=0.328  Sum_probs=67.6

Q ss_pred             CCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCC
Q psy5670         192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL  271 (1269)
Q Consensus       192 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  271 (1269)
                      ++++|+|+++.++.++..          .++|++|+|++|+++.+|..    +.+|++|++.+|.++.+..  +  .+.|
T Consensus        39 ~l~~LdLs~~~L~~lp~~----------~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L  100 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL----------PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSD--L--PPLL  100 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC----------CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCS--C--CTTC
T ss_pred             CCCEEEeCCCCCCCCCCC----------CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhh--h--cccc
Confidence            466666666666554420          24566666666666665431    2456666666665554421  1  1245


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcC
Q psy5670         272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA  351 (1269)
Q Consensus       272 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls  351 (1269)
                      ++|++++|.+..+|.  +..+++|+.|+++++.+...+.    ....+..+.+..+....    ...+..++.++.+.++
T Consensus       101 ~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~----~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE----LPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS----CCCCTTCTTCCEEECC
T ss_pred             ccccccccccccccc--hhhhccceeecccccccccccc----ccccccchhhccccccc----cccccccccceecccc
Confidence            566666665555553  2445555555555555443321    12344444444433322    2233344444444444


Q ss_pred             CCCCc
Q psy5670         352 YNKMN  356 (1269)
Q Consensus       352 ~n~l~  356 (1269)
                      +|...
T Consensus       171 ~n~~~  175 (353)
T d1jl5a_         171 NNSLK  175 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            44433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-18  Score=185.58  Aligned_cols=219  Identities=18%  Similarity=0.250  Sum_probs=141.9

Q ss_pred             EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCC-CChhhccCCccCc
Q psy5670          61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGN-LSAGSFRGLRKLK  139 (1269)
Q Consensus        61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~-i~~~~f~~l~~L~  139 (1269)
                      .+.|...+++.+|+     . .+.++++|+|++|.    ...+++.+|.++++|++|++++|.+.. +++++|.++++++
T Consensus        12 ~i~c~~~~l~~iP~-----~-l~~~l~~L~Ls~n~----i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1          12 VFLCQESKVTEIPS-----D-LPRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             EEEEESCSCSSCCS-----C-SCSCCSEEEEESCC----CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             EEEEeCCCCCCcCC-----C-CCCCCCEEECcCCc----CCccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            68898888888872     1 24678899999988    567888889999999999999888754 6677788888888


Q ss_pred             eeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcc-cCCCCCCCcEEECCCCCCCCCCccccCCCCccc
Q psy5670         140 TLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA-IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR  218 (1269)
Q Consensus       140 ~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  218 (1269)
                      .+.+..++     ......+..| .++++|++|++++|.+...+.. .+..++.+..+...++.+..+....|.+.    
T Consensus        82 ~l~~~~~n-----~l~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~----  151 (242)
T d1xwdc1          82 EIRIEKAN-----NLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL----  151 (242)
T ss_dssp             EEEEECCT-----TCCEECTTSE-ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS----
T ss_pred             cccccccc-----cccccccccc-cccccccccccchhhhcccccccccccccccccccccccccccccccccccc----
Confidence            88774322     1234555666 7788888888888877766542 22334455555556666666555555432    


Q ss_pred             CCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy5670         219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEV  298 (1269)
Q Consensus       219 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  298 (1269)
                       ...++.|++++|+++.++...+....-++.+.+.+|.++.+++..|.++++|++|++++|+++.+|+..|.++++|+.+
T Consensus       152 -~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         152 -SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             -BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             -cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence             2356667777776666665544432222333455566666665566666666666666666666666555555555544


Q ss_pred             Ee
Q psy5670         299 YL  300 (1269)
Q Consensus       299 ~L  300 (1269)
                      ++
T Consensus       231 ~~  232 (242)
T d1xwdc1         231 ST  232 (242)
T ss_dssp             SE
T ss_pred             cC
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=172.95  Aligned_cols=217  Identities=19%  Similarity=0.324  Sum_probs=124.4

Q ss_pred             cEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCC-CCcccccCCCCCcEEEeeC
Q psy5670         224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN-IPPELFNQSRDLKEVYLQN  302 (1269)
Q Consensus       224 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~L~~  302 (1269)
                      +.++.++.+++.+|...+   +++++|++++|.++.+++.+|.++++|++|++++|.+.. +++..|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            456666666666664422   456677777777766666667777777777777776554 4555666677777776643


Q ss_pred             -CcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCC-CCcEEEccCCccc
Q psy5670         303 -NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY-RLQVLHLENNQIE  380 (1269)
Q Consensus       303 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~  380 (1269)
                       |.+....+..|.++++|++|++++|.+... .....+..+..+..+...++.+..+....|.+++ .++.|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhccc-ccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             456666666667777777777777666541 1112223344455555555556655555555443 5666666666666


Q ss_pred             ccccccccCCCCCc-EEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEE
Q psy5670         381 SIHRNTFASLSNLH-TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH  445 (1269)
Q Consensus       381 ~i~~~~f~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  445 (1269)
                      .+....|.. .++. .+.+++|+++.+....|.++++|++|+|++|+++.+++..|.++++|+.++
T Consensus       167 ~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         167 EIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             EECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             ccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            665554433 2333 233455555555555555556666666666655555554444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.6e-16  Score=164.66  Aligned_cols=174  Identities=17%  Similarity=0.311  Sum_probs=133.4

Q ss_pred             cEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcc
Q psy5670         560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL  637 (1269)
Q Consensus       560 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~  637 (1269)
                      +.++.++++++.+|. .+|+.+++|+|++|+|+.......+..+++|+.|++++|++..+....+.  .+|++|+|++|+
T Consensus        11 ~~v~Cs~~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            345555565555543 35667788888888887644444556788999999999999988776654  589999999999


Q ss_pred             cccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCccccc
Q psy5670         638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL  717 (1269)
Q Consensus       638 i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l  717 (1269)
                      |+.+.+..|.++++|++|+|++|+|+.+++.+|.     ...+++++++++||+.|+|.+.|+..+-..      ...+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~-----~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~------~~l~~  158 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASNPFNCNCHLAWFAEWLRK------KSLNG  158 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSST-----TCTTCCEEECTTCCBCCSGGGHHHHHHHHH------HCCSG
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhc-----CCcccccccccccccccccchHHHhhhhhh------hcccC
Confidence            9999999999999999999999999999998773     556899999999999999999998754220      01123


Q ss_pred             CccccccccccCCCcccccccCCCcccccc
Q psy5670         718 DTVTCKLLYNRANPAILLKEAHSNQFLCEY  747 (1269)
Q Consensus       718 ~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~  747 (1269)
                      ..+.|..+.  ...+..+.++..++|.|.-
T Consensus       159 ~~~~c~~p~--~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         159 GAARCGAPS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             GGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred             CCeEeCCCh--hhcCCEeeecCHhhCcCCC
Confidence            456676543  3456678888888887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-17  Score=198.94  Aligned_cols=110  Identities=18%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             CCCEEEccCCCCCccChh----hhcCCCCCcEEEccCCCCCC-----chhhhc-CCCCCcEEECCCCCCCccCh----hh
Q psy5670         416 ALSVLSLDNNELEYIEEN----ALKNSTSLQDFHLNGNKLTE-----IPKVLR-NLHSLKTLDLGDNLITEINN----LS  481 (1269)
Q Consensus       416 ~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~-----lp~~l~-~l~~L~~L~Ls~n~i~~~~~----~~  481 (1269)
                      .|+.++++++.+......    .+..+++|++|+|++|.++.     ++..+. ..+.|++|+|++|.+++...    ..
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            455555555544433222    22334455555555555542     222332 23456666666666554322    22


Q ss_pred             hhccccCCeeeccCCcCCCCChh----hhc-CCCCCCEEEcCCCccccc
Q psy5670         482 LNSLHQLAGLRLTENNISNISKG----VFE-KLSVLTILNLASNKIQKV  525 (1269)
Q Consensus       482 ~~~l~~L~~L~Ls~n~l~~i~~~----~f~-~l~~L~~L~Ls~n~i~~~  525 (1269)
                      +..+++|++|+|++|+++.-...    .+. +...|+.|++.+|.+...
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            34455666666666665331111    111 233577777777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.1e-17  Score=195.50  Aligned_cols=349  Identities=22%  Similarity=0.241  Sum_probs=159.3

Q ss_pred             cccEEEcCCCCCCccC-cccCCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCC-----cccccC
Q psy5670         222 NLRVLDLSNNSFDSLP-AEGFSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIP-----PELFNQ  291 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~f~~  291 (1269)
                      +|+.||+++|+++... ...+..++++++|+|++|.++...    ..++..+++|++|+|++|+++...     ..+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5667777777666532 123445667777777777665432    234556677777777777664211     111122


Q ss_pred             CCCCcEEEeeCCcccccC----cccccCCCCCCEEECcCCCCCccccC--cccc-cCCCCccEEEcCCCCCcccC----c
Q psy5670         292 SRDLKEVYLQNNSINVLA----PGIFNVLTQLIVLDLSNNELTEEWVN--AATF-SGLHRLVVLNIAYNKMNKLD----S  360 (1269)
Q Consensus       292 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~-~~l~~L~~L~Ls~n~l~~~~----~  360 (1269)
                      ..+|++|+|++|.+++..    +..+..+++|++|++++|.+......  ...+ ....................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            346777777777665432    23345666777777777766542100  0001 11122333333333222111    1


Q ss_pred             hhhcCCCCCcEEEccCCcccccccc----cc-cCCCCCcEEEccCCcccccC----cccccCCCCCCEEEccCCCCCcc-
Q psy5670         361 SIFKDLYRLQVLHLENNQIESIHRN----TF-ASLSNLHTLIMSNNKLKRIE----SNSLDSLTALSVLSLDNNELEYI-  430 (1269)
Q Consensus       361 ~~~~~l~~L~~L~Ls~n~l~~i~~~----~f-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~-  430 (1269)
                      ..+.....++.++++++.+......    .+ ........+.+..+.+....    ...+...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            1123345566666665544321100    01 11223445555555433221    11223345556666665554321 


Q ss_pred             ----ChhhhcCCCCCcEEEccCCCCCCc-----hhhhcCCCCCcEEECCCCCCCccChhhh-----hccccCCeeeccCC
Q psy5670         431 ----EENALKNSTSLQDFHLNGNKLTEI-----PKVLRNLHSLKTLDLGDNLITEINNLSL-----NSLHQLAGLRLTEN  496 (1269)
Q Consensus       431 ----~~~~~~~l~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~Ls~n  496 (1269)
                          ..........++.+++++|.+...     ...+...+.++.+++++|.++......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                122233445566666666655522     1233445566666666666543322221     11234555555555


Q ss_pred             cCCCCChh----hhcCCCCCCEEEcCCCcccccccc----cc-CCCCCccEEEcccccccc-----cCCcCCCCCCCcEE
Q psy5670         497 NISNISKG----VFEKLSVLTILNLASNKIQKVEAG----TF-DNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWL  562 (1269)
Q Consensus       497 ~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~~~~----~~-~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L  562 (1269)
                      .++.....    .+...++|++|+|++|+++.....    .+ ...+.|+.|+|++|.+++     +...+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            55332211    223344555555555555432111    11 123445555555555542     12223334445555


Q ss_pred             EccCCcCc
Q psy5670         563 NISENLLE  570 (1269)
Q Consensus       563 ~Ls~n~l~  570 (1269)
                      ++++|+++
T Consensus       403 ~Ls~N~i~  410 (460)
T d1z7xw1         403 DLSNNCLG  410 (460)
T ss_dssp             ECCSSSCC
T ss_pred             ECCCCcCC
Confidence            55555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.2e-16  Score=168.55  Aligned_cols=80  Identities=23%  Similarity=0.356  Sum_probs=34.5

Q ss_pred             CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670         243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  322 (1269)
                      ++.+|+.|++.+|.++.+.  .+..+++|++|++++|+++.+.+  |..+++|+.+++++|.++.+.  .+.++++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc--ccccccccccc
Confidence            3444444444444444431  24444444444444444444332  344444444444444443332  13344444444


Q ss_pred             ECcCCC
Q psy5670         323 DLSNNE  328 (1269)
Q Consensus       323 ~L~~n~  328 (1269)
                      +++++.
T Consensus       113 ~l~~~~  118 (227)
T d1h6ua2         113 DLTSTQ  118 (227)
T ss_dssp             ECTTSC
T ss_pred             cccccc
Confidence            444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.3e-16  Score=164.06  Aligned_cols=201  Identities=27%  Similarity=0.383  Sum_probs=108.9

Q ss_pred             EccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCC
Q psy5670         251 YLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT  330 (1269)
Q Consensus       251 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  330 (1269)
                      +++.+.+++..  .+..+.+|+.|++.+|+++.++.  +..+++|++|++++|.++++.+  +..+++|+.+++++|.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            34444444432  24456677777777777776632  5667777777777776666543  566666777776666655


Q ss_pred             ccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCccc
Q psy5670         331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS  410 (1269)
Q Consensus       331 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~  410 (1269)
                      .    ...+.++++|+.++++++......+  +...+.++.+.++++.+.....  +..+++|+.|++++|         
T Consensus        99 ~----i~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n---------  161 (227)
T d1h6ua2          99 N----VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA---------  161 (227)
T ss_dssp             C----CGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS---------
T ss_pred             c----cccccccccccccccccccccccch--hccccchhhhhchhhhhchhhh--hcccccccccccccc---------
Confidence            4    2345556666666666555444322  3344455555555554443321  334444555555444         


Q ss_pred             ccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCe
Q psy5670         411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAG  490 (1269)
Q Consensus       411 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  490 (1269)
                                     .+....  .++++++|++|++++|+++.++. +..+++|++|++++|+++++.+  ++++++|+.
T Consensus       162 ---------------~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         162 ---------------QVSDLT--PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             ---------------CCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             ---------------ccccch--hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCE
Confidence                           444332  24445555555555555555443 4455555555555555555443  455555555


Q ss_pred             eecc
Q psy5670         491 LRLT  494 (1269)
Q Consensus       491 L~Ls  494 (1269)
                      |+++
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            5554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.1e-15  Score=157.17  Aligned_cols=162  Identities=30%  Similarity=0.458  Sum_probs=80.5

Q ss_pred             CCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670         392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD  471 (1269)
Q Consensus       392 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~  471 (1269)
                      +|+.|++++|.++.+.  .+..+++|++|++++|+++++.+  ++.+++|+.|++++|+++.+| .+..+++|+.|++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-ccccccccccccccc
Confidence            3444444444443332  13344444444444444444332  344455555555555555544 244455555555555


Q ss_pred             CCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCC
Q psy5670         472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGG  551 (1269)
Q Consensus       472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~  551 (1269)
                      |.+..+.  .+..++.++.+++++|.+...+.  +..+++|+++++++|+++++.+  +.++++|++|++++|++++++ 
T Consensus       122 ~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-  194 (210)
T d1h6ta2         122 NGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-  194 (210)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-
T ss_pred             ccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-
Confidence            5544332  24445555555555555544332  3445556666666665555432  455556666666666665554 


Q ss_pred             cCCCCCCCcEEEcc
Q psy5670         552 LFPKLPNLVWLNIS  565 (1269)
Q Consensus       552 ~~~~l~~L~~L~Ls  565 (1269)
                      .+.++++|++|+|+
T Consensus       195 ~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         195 ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGTTCTTCSEEEEE
T ss_pred             hhcCCCCCCEEEcc
Confidence            35555666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=7.2e-15  Score=154.29  Aligned_cols=103  Identities=25%  Similarity=0.357  Sum_probs=44.8

Q ss_pred             CCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCC
Q psy5670         190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN  269 (1269)
Q Consensus       190 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  269 (1269)
                      +.+|++|++++|+++.+..        +..+++|++|++++|+++.+++  ++++++|+.|++++|.++.+.  .+.+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~--------l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~  112 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--------IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLK  112 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCT
T ss_pred             hcCccEEECcCCCCCCchh--------HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--cccccc
Confidence            3455555555555544321        1123445555555555544432  344444444444444444432  244444


Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc
Q psy5670         270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN  306 (1269)
Q Consensus       270 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  306 (1269)
                      +|+.|++++|.+..++.  +..++.++.+++++|.++
T Consensus       113 ~L~~L~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         113 KLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccc--cccccccccccccccccc
Confidence            44444444444433321  233344444444444333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=151.24  Aligned_cols=105  Identities=34%  Similarity=0.545  Sum_probs=41.4

Q ss_pred             CCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670         365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF  444 (1269)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  444 (1269)
                      .+++|++|++++|+++.+++  +.++++|+.|++++|.+..+.  .+.+++.|+.|+++++.+..+.  .+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccccccccccccccc--ccchhhhhHHh
Confidence            34444444444444443332  334444444444444333322  1333444444444444333322  13334444444


Q ss_pred             EccCCCCCCchhhhcCCCCCcEEECCCCCCCc
Q psy5670         445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      ++++|.+..++ .+..+++|++|++++|++++
T Consensus       134 ~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         134 ELSSNTISDIS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC
T ss_pred             hhhhhhhcccc-cccccccccccccccccccC
Confidence            44444443332 23334444444444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=151.29  Aligned_cols=128  Identities=29%  Similarity=0.466  Sum_probs=49.7

Q ss_pred             CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670         243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL  322 (1269)
Q Consensus       243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  322 (1269)
                      .+++|++|++++|.++++.+  ++++++|++|++++|.+..+++  +..++.|+.|+++++.+..+.+  +..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--cccccccccccccccccccccc--cchhhhhHHh
Confidence            33344444444443333321  3344444444444443333332  2333444444444333333211  3334444444


Q ss_pred             ECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccccc
Q psy5670         323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI  382 (1269)
Q Consensus       323 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i  382 (1269)
                      ++++|.+..    ...+..+++|+.|++++|+++++.+  ++++++|++|++++|+++++
T Consensus       134 ~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         134 ELSSNTISD----ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             ECCSSCCCC----CGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhcc----cccccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCC
Confidence            444444332    1223344444444444444433321  33444444444444444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.4e-14  Score=139.15  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=77.3

Q ss_pred             CCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccc
Q psy5670         823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK  902 (1269)
Q Consensus       823 f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  902 (1269)
                      |.+..+|++|+|++|+|+.|+ +.+..+++|+.|+|++|+|+.++  .|.++++|++|+|++|+|+.+++..|..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            445556677777777777774 45566777777777777777774  366777777777777777777777777777777


Q ss_pred             eEeccCccceeeec-c-c-ccCCccEEEeeCCcccccCC
Q psy5670         903 VLQLDHNRITSFAV-W-H-LSSQIQSITLTSNPWSCDCD  938 (1269)
Q Consensus       903 ~L~L~~N~l~~~~~-~-~-~~~~l~~l~l~~Np~~C~C~  938 (1269)
                      .|+|++|+|+.++. . + .+++|+.+++++||+....+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccc
Confidence            77777777776654 2 3 56777777777777754443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.9e-13  Score=129.29  Aligned_cols=104  Identities=22%  Similarity=0.292  Sum_probs=75.1

Q ss_pred             EEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccccc
Q psy5670         807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK  886 (1269)
Q Consensus       807 ~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~  886 (1269)
                      .|++++|+|+.++  .+.++++|++|++++|+|+.+++ .|..+++|++|++++|+|+.+++  |.++++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECCCCc
Confidence            5777777777776  36677777777777777777753 56777777777777777777753  6777777777777777


Q ss_pred             CcccCh-hhhhcCcccceEeccCccceeee
Q psy5670         887 IIYISN-RTFLSLTHLKVLQLDHNRITSFA  915 (1269)
Q Consensus       887 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~  915 (1269)
                      |+.++. ..|..+++|++|++++|+++..+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            777764 56677777777777777776554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-13  Score=136.31  Aligned_cols=122  Identities=22%  Similarity=0.309  Sum_probs=110.2

Q ss_pred             CCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeec
Q psy5670         803 MDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL  882 (1269)
Q Consensus       803 ~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L  882 (1269)
                      ..+++|+|++|+|+.|+ +.+.++++|+.|+|++|+|+.++  .|..+++|++|++++|+++.+++..|..+++|++|+|
T Consensus        18 ~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            45789999999999997 56788999999999999999995  4899999999999999999999999999999999999


Q ss_pred             ccccCcccCh-hhhhcCcccceEeccCccceeeecc----c-ccCCccEEE
Q psy5670         883 QYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW----H-LSSQIQSIT  927 (1269)
Q Consensus       883 ~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~----~-~~~~l~~l~  927 (1269)
                      ++|+|+.++. ..|..+++|++|++++|.++..+..    + .+++|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999976 6788999999999999999988753    2 678888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.4e-13  Score=127.52  Aligned_cols=106  Identities=20%  Similarity=0.247  Sum_probs=95.5

Q ss_pred             cEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCc
Q psy5670         830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN  909 (1269)
Q Consensus       830 ~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N  909 (1269)
                      ++|+|++|+|+.++.  +..+++|++|++++|+|+.+++ .|.++++|++|++++|+|+.++.  |..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            579999999998863  8999999999999999999975 68999999999999999999963  889999999999999


Q ss_pred             cceeeecc--c-ccCCccEEEeeCCcccccCCcH
Q psy5670         910 RITSFAVW--H-LSSQIQSITLTSNPWSCDCDFT  940 (1269)
Q Consensus       910 ~l~~~~~~--~-~~~~l~~l~l~~Np~~C~C~~~  940 (1269)
                      +|+.++..  + .+++|+.+++++||+....+..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~  109 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  109 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHH
Confidence            99998863  4 7899999999999998777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=128.84  Aligned_cols=115  Identities=20%  Similarity=0.391  Sum_probs=93.1

Q ss_pred             cEEECCCCCcccccccccccccccccEEEcCCC-ccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcC
Q psy5670         582 QWLDIHGNQISELGNYFEIESQLRLTYFDASSN-KLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLV  658 (1269)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N-~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs  658 (1269)
                      ..++.+++.+.+.+.  .+..+++|++|++++| .|+.+....+.  .+|+.|+|++|+|+.+.+..|..+++|+.|+|+
T Consensus        11 ~~l~c~~~~~~~~p~--~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTTTT--TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccCcc--cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345555555555443  2445678899999766 58888776665  589999999999999999999999999999999


Q ss_pred             CCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhc
Q psy5670         659 GNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYS  704 (1269)
Q Consensus       659 ~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~  704 (1269)
                      +|+|+.++...+.      ..++..+++++|||.|+|.+.|+..+.
T Consensus        89 ~N~l~~l~~~~~~------~~~l~~L~L~~Np~~C~C~~~~l~~~~  128 (156)
T d2ifga3          89 FNALESLSWKTVQ------GLSLQELVLSGNPLHCSCALRWLQRWE  128 (156)
T ss_dssp             SSCCSCCCSTTTC------SCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             CCCCcccChhhhc------cccccccccCCCcccCCchHHHHHHHH
Confidence            9999999988763      235889999999999999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-13  Score=145.39  Aligned_cols=58  Identities=26%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             CCCcEEEccCCccccc-ccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccC
Q psy5670         367 YRLQVLHLENNQIESI-HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN  424 (1269)
Q Consensus       367 ~~L~~L~Ls~n~l~~i-~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  424 (1269)
                      .+|++|+++++.++.. ....+..+++|++|+++++.+++.....+..+++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3555555555554321 122344555555555555554444444444455555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=143.42  Aligned_cols=57  Identities=32%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             cccEEEcCCCCCCcc-CcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccC
Q psy5670         222 NLRVLDLSNNSFDSL-PAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV  278 (1269)
Q Consensus       222 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  278 (1269)
                      +|++||++++.++.. ....+..+++|++|++++|.+.+.....+..+++|++|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            445555554443321 112234444444444444444433333444444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=2.6e-12  Score=145.87  Aligned_cols=136  Identities=19%  Similarity=0.224  Sum_probs=62.9

Q ss_pred             cCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCccChhhh-------------hccccCCeeeccCCc
Q psy5670         436 KNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINNLSL-------------NSLHQLAGLRLTENN  497 (1269)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~-------------~~l~~L~~L~Ls~n~  497 (1269)
                      ..+++|++|+|++|.++.     +...+...++|++|++++|.+.......+             ...+.|+.+.+++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            344455555555554442     22233444555555555555432111111             123345555555555


Q ss_pred             CCCCCh----hhhcCCCCCCEEEcCCCccccc-----cccccCCCCCccEEEcccccccc-----cCCcCCCCCCCcEEE
Q psy5670         498 ISNISK----GVFEKLSVLTILNLASNKIQKV-----EAGTFDNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLN  563 (1269)
Q Consensus       498 l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~-----~~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~  563 (1269)
                      ++.-..    ..+..++.|+.|+|++|++...     ....+..+++|+.|++++|.++.     +...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            432111    1233445566666666655431     12234445556666666665542     223344555666666


Q ss_pred             ccCCcCcc
Q psy5670         564 ISENLLEW  571 (1269)
Q Consensus       564 Ls~n~l~~  571 (1269)
                      +++|.|+.
T Consensus       250 Ls~n~i~~  257 (344)
T d2ca6a1         250 LNDCLLSA  257 (344)
T ss_dssp             CTTCCCCH
T ss_pred             hhcCccCc
Confidence            66665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=3.5e-12  Score=144.86  Aligned_cols=87  Identities=21%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             CCCCcEEEccCCcccccCc----ccccCCCCCCEEEccCCCCCcc-----ChhhhcCCCCCcEEEccCCCCCC-----ch
Q psy5670         390 LSNLHTLIMSNNKLKRIES----NSLDSLTALSVLSLDNNELEYI-----EENALKNSTSLQDFHLNGNKLTE-----IP  455 (1269)
Q Consensus       390 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~-----lp  455 (1269)
                      .+.|+.+.+++|.+.....    ..+..++.|+.|+|++|.+...     ....+..+++|+.|++++|.++.     +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            3445555555554433221    1123334455555555544321     11223344455555555554431     22


Q ss_pred             hhhcCCCCCcEEECCCCCCCc
Q psy5670         456 KVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       456 ~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      ..+..+++|++|++++|.+++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCH
T ss_pred             ccccccccchhhhhhcCccCc
Confidence            334444555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=3.9e-12  Score=131.12  Aligned_cols=126  Identities=26%  Similarity=0.401  Sum_probs=103.8

Q ss_pred             cEEEecCC--CCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecc
Q psy5670         806 TELYLDGN--RIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ  883 (1269)
Q Consensus       806 ~~l~l~~n--~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~  883 (1269)
                      +.+.+.++  .+..++ ..+.++++|+.|+|++|+|+.++  .|.++++|+.|+|++|+|+.+++ .+..+++|++|+++
T Consensus        26 ~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~  101 (198)
T d1m9la_          26 EKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWIS  101 (198)
T ss_dssp             SCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECS
T ss_pred             ceeeeecccCchhhhh-hHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccccccc
Confidence            44555543  233333 35778999999999999999985  48999999999999999999874 45566789999999


Q ss_pred             cccCcccChhhhhcCcccceEeccCccceeeec-c-c-ccCCccEEEeeCCcccccC
Q psy5670         884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV-W-H-LSSQIQSITLTSNPWSCDC  937 (1269)
Q Consensus       884 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~-~-~~~~l~~l~l~~Np~~C~C  937 (1269)
                      +|+|+.++  .+..+++|++|+|++|+|+.++. . + .+++|+.|++++||+.+.-
T Consensus       102 ~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         102 YNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             EEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            99999985  47889999999999999999875 3 5 7899999999999987653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=7.9e-12  Score=128.78  Aligned_cols=112  Identities=26%  Similarity=0.322  Sum_probs=65.8

Q ss_pred             cccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCC
Q psy5670         410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA  489 (1269)
Q Consensus       410 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  489 (1269)
                      .+..+++|+.|+|++|.|..+.  .+..+++|+.|++++|.++.+|.....+++|++|++++|.++.+.  .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH--HHHHHHHSS
T ss_pred             HHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccccccccccccccccccccccccc--ccccccccc
Confidence            3445555556666655555543  255556666666666666665544444455666666666666542  355666666


Q ss_pred             eeeccCCcCCCCCh-hhhcCCCCCCEEEcCCCccccc
Q psy5670         490 GLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKV  525 (1269)
Q Consensus       490 ~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~i~~~  525 (1269)
                      .|++++|.++.++. ..|..+++|+.|++++|++...
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccC
Confidence            66666666665543 3456666666666666665544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.3e-07  Score=93.16  Aligned_cols=65  Identities=20%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             CCcccCeeecccccCcccCh--hhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccC
Q psy5670         873 RLENLRELYLQYNKIIYISN--RTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDC  937 (1269)
Q Consensus       873 ~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C  937 (1269)
                      ++++|++|+|++|+|+.+++  ..+..+++|+.|+|++|+|+.+++. + ....++.++++|||+.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            34444444444444444432  2334444444444444444444443 2 2334555666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.1e-07  Score=89.42  Aligned_cols=68  Identities=25%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             cccCCCCCCEEeCCCCCCcccCc--ccccCCcccCeeecccccCcccChhhhhcCcccceEeccCcccee
Q psy5670         846 TFNGLKELIILRLDDNRLTEIRG--YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS  913 (1269)
Q Consensus       846 ~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  913 (1269)
                      .+..+++|++|+|++|+|+.+++  ..|..+++|+.|+|++|+|+.+++-.+.....|+.|+|++|.++.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            33445555555555555555442  234445555555555555555555444444445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.26  E-value=0.00026  Score=69.02  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             cCCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCCCCCc
Q psy5670         436 KNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      ...+.|++|+|++|.++     .+...+...+.|++|+|++|.++.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            33344444444444443     122233334445555555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=0.00035  Score=68.06  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=20.7

Q ss_pred             cCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCc
Q psy5670         436 KNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITE  476 (1269)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~  476 (1269)
                      ...+.|++|+|++|.++.     +-.++...++|++|++++|.+..
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            344555555555555542     22234445556666665554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.35  E-value=0.0013  Score=63.89  Aligned_cols=39  Identities=23%  Similarity=0.530  Sum_probs=17.4

Q ss_pred             CCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCC
Q psy5670         437 NSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLIT  475 (1269)
Q Consensus       437 ~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~  475 (1269)
                      ..+.|++|++++|.++.     +...+...+.++.+++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34444444444444431     2223334445555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.24  E-value=0.0015  Score=63.43  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=27.7

Q ss_pred             CCCCCCEEEccCCCCCccC----hhhhcCCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEEC
Q psy5670         413 SLTALSVLSLDNNELEYIE----ENALKNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDL  469 (1269)
Q Consensus       413 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L  469 (1269)
                      ..+.|++|+|++|.+....    ...+...++++.+++++|.++     .+...+...++|+.++|
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            4445555555555443321    123344556666666666554     12234455566665444