Psyllid ID: psy5676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MRLTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MRLTLLARRAIqipfelpthrRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKelfetthpspikfptspgl
Flexible Loop (DISEMBL)
mrltllarraiqipfelpthrrqVQSLYKRAVRNLeayhsdivdLRIEAVLLRArfdkhkdekdLVKIRALLAEGekelfetthpspikfptspgl
Low Complexity Region (SEG)
MRLTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL
Disordered region (IsUnstruct)
****LLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE**********************
Disordered Region (DISOPRED)
********RAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL
Disordered Region (DISEMBL)
MRLTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL
Disordered Region (DISPRO)
*R*TLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTS*G*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q02369	179	NADH dehydrogenase [ubiqu	yes	N/A	0.802	0.430	0.519	2e-15
Q0MQE8	179	NADH dehydrogenase [ubiqu	yes	N/A	0.802	0.430	0.493	7e-15
Q9CQJ8	179	NADH dehydrogenase [ubiqu	yes	N/A	0.802	0.430	0.467	2e-14
Q9Y6M9	179	NADH dehydrogenase [ubiqu	yes	N/A	0.802	0.430	0.480	3e-14
Q0MQE9	179	NADH dehydrogenase [ubiqu	N/A	N/A	0.802	0.430	0.480	3e-14
Q0MQF0	179	NADH dehydrogenase [ubiqu	yes	N/A	0.802	0.430	0.480	3e-14
Q945M1	117	NADH dehydrogenase [ubiqu	yes	N/A	0.854	0.700	0.329	0.0003

>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          TH+++V  LYKRA+R+LE++       R  A LLRARFD+HK+EKD+VK   LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVKATQLLREAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           +   HP P  FP SPG
Sbjct: 71 FWHGQHPQPYIFPESPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Bos taurus (taxid: 9913)

>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 52/77 (67%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          THR++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+V+   LL E E+E
Sbjct: 11 THRQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVRATQLLKEAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           +   HP P  FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 53/77 (68%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+++   LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           ++  HP P  FP SPG
Sbjct: 71 FWQNQHPQPYIFPDSPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           +   HP P  FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           +   HP P  FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
          TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query: 79 LFETTHPSPIKFPTSPG 95
           +   HP P  FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)

Query: 4  TLLARRAIQIPFELPTHRRQVQSLYKRAVRNL--EAYHSDIVDLRIEAVLLRARFDKHKD 61
             ARRA Q        + +V+ LY+RA+++    A H  I     +A  LR +F+ ++D
Sbjct: 8  AYFARRAAQ--------KERVRILYRRALKDTLNWAVHRHI--FYRDASDLREKFNVNQD 57

Query: 62 EKDLVKIRALLAEGEKELFETTHPSPIKFPTSPG 95
           +D+ +I  L+A GE E  +  HP P   P +PG
Sbjct: 58 VEDVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPG 91

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Is required for correct plant growth and development.

Arabidopsis thaliana (taxid: 3702)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
UNIPROTKB|Q02369	179	NDUFB9 "NADH dehydrogenase [ub	0.781	0.418	0.531	1.6e-15
RGD|1307114	179	Ndufb9 "NADH dehydrogenase (ub	0.781	0.418	0.493	4.2e-15
UNIPROTKB|F1PKB6	179	NDUFB9 "Uncharacterized protei	0.781	0.418	0.506	5.4e-15
MGI|MGI:1913468	179	Ndufb9 "NADH dehydrogenase (ub	0.781	0.418	0.481	1.1e-14
UNIPROTKB|F1RRP9	180	NDUFB9 "Uncharacterized protei	0.895	0.477	0.471	1.4e-14
UNIPROTKB|F1NPF3	181	NDUFB9 "Uncharacterized protei	0.781	0.414	0.506	2.3e-14
FB|FBgn0032511	144	CG9306 [Drosophila melanogaste	0.864	0.576	0.5	3e-14
UNIPROTKB|E7EWZ0	178	NDUFB9 "NADH dehydrogenase [ub	0.802	0.432	0.480	3.8e-14
UNIPROTKB|E9PF49	221	NDUFB9 "NADH dehydrogenase [ub	0.802	0.348	0.480	3.8e-14
UNIPROTKB|Q9Y6M9	179	NDUFB9 "NADH dehydrogenase [ub	0.802	0.430	0.480	3.8e-14

UNIPROTKB|Q02369 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 42/79 (53%), Positives = 54/79 (68%)

Query:    19 THRRQVQSLYKRAVRNLEAY--HSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76
             TH+++V  LYKRA+R+LE++  H D    R  A LLRARFD+HK+EKD+VK   LL E E
Sbjct:    11 THQQKVLRLYKRALRHLESWCIHRD--KYRYFACLLRARFDEHKNEKDMVKATQLLREAE 68

Query:    77 KELFETTHPSPIKFPTSPG 95
             +E +   HP P  FP SPG
Sbjct:    69 EEFWHGQHPQPYIFPESPG 87

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1307114 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 39/79 (49%), Positives = 55/79 (69%)

Query:    19 THRRQVQSLYKRAVRNLEAY--HSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76
             THR++V  LYKRA+R+LE++  H D    R  A L+RARF++HK+EKD++K   LL + E
Sbjct:    11 THRQKVLRLYKRALRHLESWCVHRD--KYRYLACLMRARFEEHKNEKDMMKATQLLRQAE 68

Query:    77 KELFETTHPSPIKFPTSPG 95
             +E ++  HP P  FP SPG
Sbjct:    69 EEFWQNQHPQPYIFPDSPG 87

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PKB6 NDUFB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/79 (50%), Positives = 53/79 (67%)

Query:    19 THRRQVQSLYKRAVRNLEAY--HSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76
             TH+++V  LYKRA+R+LE+Y  H D    R  A L+RARF++HK+EKD+VK   LL   E
Sbjct:    11 THQQKVLRLYKRALRHLESYCVHRD--KYRYFACLMRARFEEHKNEKDMVKATQLLRAAE 68

Query:    77 KELFETTHPSPIKFPTSPG 95
             +E +   HP P  FP SPG
Sbjct:    69 EEFWHNQHPQPYIFPESPG 87

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

MGI|MGI:1913468 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/79 (48%), Positives = 55/79 (69%)

Query:    19 THRRQVQSLYKRAVRNLEAY--HSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76
             TH+++V  LYKRA+R+LE++  H D    R  A L+RARF++HK+EKD+++   LL E E
Sbjct:    11 THQQKVLRLYKRALRHLESWCIHRD--KYRYFACLMRARFEEHKNEKDMMRATQLLREAE 68

Query:    77 KELFETTHPSPIKFPTSPG 95
             +E ++  HP P  FP SPG
Sbjct:    69 EEFWQNQHPQPYIFPDSPG 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|F1RRP9 NDUFB9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 41/87 (47%), Positives = 55/87 (63%)

Query:    10 AIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVD-LRIEAVLLRARFDKHKDEKDLVKI 68
             A   P    TH+++V  LYKRA+R+LE++     D  R  A L+RARFD+HK+EKD+VK 
Sbjct:     2 AFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRRDKYRYFACLMRARFDEHKNEKDMVKA 61

Query:    69 RALLAEGEKELFETTHPSPIKFPTSPG 95
               LL + E+E +   HP P  FP SPG
Sbjct:    62 TQLLRQAEEEFWYGQHPQPYIFPESPG 88

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|F1NPF3 NDUFB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 40/79 (50%), Positives = 53/79 (67%)

Query:    19 THRRQVQSLYKRAVRNLEAY--HSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76
             TH+++V  LYK+++R+LE++  H D    R  AVLLR RFDK+KD KD+VK   LL  GE
Sbjct:    13 THQQKVLRLYKKSLRHLESWCIHRD--KYRYFAVLLRDRFDKNKDVKDMVKATELLRAGE 70

Query:    77 KELFETTHPSPIKFPTSPG 95
             +E +   HP P  FP SPG
Sbjct:    71 EEFWANQHPQPYIFPDSPG 89

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

FB|FBgn0032511 CG9306 [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/84 (50%), Positives = 56/84 (66%)

Query:    12 QIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRAL 71
             Q+P  + +H+RQV SLYKRA+RNLE+++      R  AV LRARFD+++  KDL +   L
Sbjct:     3 QVPLAIVSHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDENRS-KDLGEGIRL 61

Query:    72 LAEGEKELFETTHPSPIKFPTSPG 95
             LA G++ELFET H  P  F  S G
Sbjct:    62 LACGQRELFETRHFQPRNFANSAG 85

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

UNIPROTKB|E7EWZ0 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query:    19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
             TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct:    11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query:    79 LFETTHPSPIKFPTSPG 95
              +   HP P  FP SPG
Sbjct:    71 FWYRQHPQPYIFPDSPG 87

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E9PF49 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query:    19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
             TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct:    11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query:    79 LFETTHPSPIKFPTSPG 95
              +   HP P  FP SPG
Sbjct:    71 FWYRQHPQPYIFPDSPG 87

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9Y6M9 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query:    19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
             TH+++V  LYKRA+R+LE++       R  A L+RARF++HK+EKD+ K   LL E E+E
Sbjct:    11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query:    79 LFETTHPSPIKFPTSPG 95
              +   HP P  FP SPG
Sbjct:    71 FWYRQHPQPYIFPDSPG 87

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q945M1	NDUB9_ARATH	No assigned EC number	0.3297	0.8541	0.7008	yes	N/A
Q02369	NDUB9_BOVIN	No assigned EC number	0.5194	0.8020	0.4301	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	5e-06
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	1e-05

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 39.9 bits (94), Expect = 5e-06
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKEL 79
          ++V SLY++ +R    +             +R  F K+K+  D  KI ALL EG+K+L
Sbjct: 1  KEVLSLYRQLLREARKFPDYNAREYFRR-RIRDEFRKNKNLTDPEKIEALLKEGKKQL 57

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAV-LLRARFDKHKDEKDLVKIRALLAEGEKEL 79
          ++V SLY++ +R   A      + R      +R  F K+KD  D  KI  LL EG+K+L
Sbjct: 1  KEVLSLYRQLLR--AARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQL 57

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG3466|consensus	157		99.93
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.67
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.65
KOG3801|consensus	94		99.64
KOG4620|consensus	80		99.45
KOG3426|consensus	124		99.14
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.63
KOG4100|consensus	125		97.1
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	93.89

>KOG3466|consensus

Probab=99.93  E-value=3.5e-26  Score=158.26  Aligned_cols=82  Identities=45%  Similarity=0.710  Sum_probs=78.6

Q ss_pred             CCCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5676          13 IPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPT   92 (96)
Q Consensus        13 ~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~hp~Py~~p~   92 (96)
                      .++.+++|+++|++|||++||...+|++.|+.||+.+..||++|++|++ +|..++..||++|++||.+..||+|||||+
T Consensus         5 ~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ifp~   83 (157)
T KOG3466|consen    5 YFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPYIFPD   83 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence            4555669999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             CCC
Q psy5676          93 SPG   95 (96)
Q Consensus        93 ~pg   95 (96)
                      |||
T Consensus        84 spG   86 (157)
T KOG3466|consen   84 SPG   86 (157)
T ss_pred             CCC
Confidence            999

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.67  E-value=2.4e-16  Score=93.50  Aligned_cols=59  Identities=32%  Similarity=0.494  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy5676          22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFE   81 (96)
Q Consensus        22 ~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~   81 (96)
                      ++||+|||++||.+..|+++. .-......||++|++|++++||+.|+.++.+|+.+|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            589999999999999988743 11223468999999999999999999999999999874

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.65  E-value=6e-16  Score=92.93  Aligned_cols=59  Identities=36%  Similarity=0.485  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q psy5676          22 RQVQSLYKRAVRNLEAYHSDIVDLR-IEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFET   82 (96)
Q Consensus        22 ~~Vl~LYR~~LR~~~~~~~~r~~~r-~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~   82 (96)
                      ++||+|||++||++..|++  ++++ +...+||++|++|++++||++|+.++++|+++|..+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~--~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l   60 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPD--YNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL   60 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCC--cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence            4899999999999999986  3333 234589999999999999999999999999999875

>KOG3801|consensus

Probab=99.64  E-value=8.5e-16  Score=99.64  Aligned_cols=64  Identities=28%  Similarity=0.346  Sum_probs=58.1

Q ss_pred             cchHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcc
Q psy5676          18 PTHRRQVQSLYKRAVRNLEAYHSDIVDLRIE-AVLLRARFDKHKDEKDLVKIRALLAEGEKELFETT   83 (96)
Q Consensus        18 ~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~-a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~   83 (96)
                      +.++++|++|||.+||+++.+++  ++||.+ .+++|+.|++|++++||.+|+.++++|+++|+...
T Consensus         3 ~~sr~qvlsLyr~~lr~s~qfp~--YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik   67 (94)
T KOG3801|consen    3 MVSRRQVLSLYRNLLRESKQFPQ--YNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK   67 (94)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCc--ccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999987  777755 46999999999999999999999999999998654

>KOG4620|consensus

Probab=99.45  E-value=6.4e-13  Score=83.30  Aligned_cols=69  Identities=28%  Similarity=0.415  Sum_probs=58.7

Q ss_pred             CccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhccCCC
Q psy5676          16 ELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDE--KDLVKIRALLAEGEKELFETTHPS   86 (96)
Q Consensus        16 ~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~v--tD~~~I~~Ll~~g~~~L~~~~hp~   86 (96)
                      .+.+.+++||+|||.+||+++..+.  .+-+.....|++||++|+++  +|.-.|+.|+..|+++++.+.||.
T Consensus         3 rlSgLQrqVlhlYR~~lraa~~Kp~--~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe   73 (80)
T KOG4620|consen    3 RLSGLQRQVLHLYRDLLRAARGKPG--AEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE   73 (80)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence            3447899999999999999998876  22222335799999999999  699999999999999999999995

>KOG3426|consensus

Probab=99.14  E-value=1.4e-10  Score=78.22  Aligned_cols=68  Identities=29%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             CCCCccchHHHHHHHHHHHHHHHhhcccc-------hHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcc
Q psy5676          13 IPFELPTHRRQVQSLYKRAVRNLEAYHSD-------IVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETT   83 (96)
Q Consensus        13 ~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~-------r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~   83 (96)
                      ........|++|+.|||.+.|....+..+       -..+|   .+||++|.+|.|+|||.+|+.|+-+|+.+|++..
T Consensus        15 ~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R---~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv   89 (124)
T KOG3426|consen   15 NSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLR---DKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIV   89 (124)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHH---HHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHH
Confidence            33444456999999999999999653221       13344   4899999999999999999999999999998754

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.63  E-value=0.00024  Score=46.13  Aligned_cols=55  Identities=29%  Similarity=0.353  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhhcccchHHH------HHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5676          24 VQSLYKRAVRNLEAYHSDIVDL------RIEAVLL----RARFDKHKDEKDLVKIRALLAEGEKE   78 (96)
Q Consensus        24 Vl~LYR~~LR~~~~~~~~r~~~------r~~a~~i----R~~Fe~nk~vtD~~~I~~Ll~~g~~~   78 (96)
                      |++|||.+||+...|+......      ...-..|    +++|+.+++++|+..+..-+.+.+.-
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y   65 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENY   65 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            7999999999999876432110      1122467    99999999999777777666666543

>KOG4100|consensus

Probab=97.10  E-value=0.003  Score=42.95  Aligned_cols=58  Identities=26%  Similarity=0.407  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy5676          19 THRRQVQSLYKRAVRNLEAYHSDIVDLRI-EAVLLRARFDKHKDEKDLVKIRALLAEGEKELF   80 (96)
Q Consensus        19 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~-~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~   80 (96)
                      .|-.+|.-|||++||.=+--+.+   .|. --..|++||++||++ +|..++-.+.+.+.-..
T Consensus         7 ~~p~rvrlLYkriLrlHr~lp~~---~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~   65 (125)
T KOG4100|consen    7 LHPPRVRLLYKRILRLHRGLPAE---LRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAV   65 (125)
T ss_pred             CCcchHHHHHHHHHHHHccCChH---HHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHH
Confidence            34567878999999998877651   121 123699999999999 89999988887765443

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=93.89  E-value=0.54  Score=27.97  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy5676          21 RRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALL   72 (96)
Q Consensus        21 r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll   72 (96)
                      |.....||.+.|+....++.+..+-++--..++.++.--+...|.++|+..|
T Consensus         4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            5678899999999999998766543333347888888888899999998765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00