Psyllid ID: psy5716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS
Secondary Structure (PSIPRED)
ccccccEEEccccEEEEcccccccccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHccccccEEEEccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEEcccccccccEEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHcccccccccccccccccccccccccHHHHHHHHHHccccEcEEEEccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mtgsceridighnCVEVACDytkrkhvlrlsspssntelllQADDTLTMAHWIRDLQTHAIAqsasesnispasgqknrkfasastsprkssateatlppspksktwkgRVAKQFRRiqagagspnsphppyppgsnigvplqhcvsvnllcpflfprvpgntaaVSSLTEAVNKGldasvleqdprwsdvNVISSLLKSFFRRlpdsllttelyphfiqadkiedpaTRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMfgptlvragddnmvtmvs
Flexible Loop (DISEMBL)
mtgsceridighnCVEVACDYTKRKHVlrlsspssntELLLQADDTLTMAHWIRDLQTHAIAQSASesnispasgqkNRKFAsastsprkssateatlppspksktwkgrVAKQFRRIqagagspnsphPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDAsvleqdprwsDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARnlaimfgptlvragddnmvtmvs
Low Complexity Region (SEG)
MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAgspnsphppyppgsnIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS
Disordered region (IsUnstruct)
*****ERIDIGHNCVEVACDYTKRKHVLRL*******ELLLQADDTLTMAHWIRDLQTHAI****************************************************************************IGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA**********
Disordered Region (DISOPRED)
****CER*DIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ***************************************************************************PPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD****MV*
Disordered Region (DISEMBL)
MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ************************************************AKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS
Disordered Region (DISPRO)
****CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI**********************************************KGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q71M21	1902	Rho GTPase-activating pro	N/A	N/A	0.914	0.141	0.395	3e-51
Q6DFG0	1926	Rho GTPase-activating pro	N/A	N/A	0.945	0.144	0.382	6e-50
Q5T5U3	1957	Rho GTPase-activating pro	yes	N/A	0.948	0.142	0.371	5e-49
Q6DFV3	1944	Rho GTPase-activating pro	yes	N/A	0.948	0.143	0.374	6e-49
A2RUV4	1935	Rho GTPase-activating pro	yes	N/A	0.948	0.144	0.377	1e-47
Q9P227	1491	Rho GTPase-activating pro	no	N/A	0.962	0.189	0.378	1e-47
Q69ZH9	1483	Rho GTPase-activating pro	no	N/A	0.935	0.185	0.366	9e-47
P34288	1605	GTPase-activating protein	yes	N/A	0.465	0.085	0.514	7e-38
Q9BE31	847	Rho GTPase-activating pro	N/A	N/A	0.904	0.314	0.289	1e-22
Q6TLK4	869	Rho GTPase-activating pro	no	N/A	0.421	0.142	0.420	6e-22

>sp|Q71M21|RH21B_XENLA Rho GTPase-activating protein 21-B OS=Xenopus laevis GN=arhgap21-b PE=2 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 60/329 (18%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA-----IA 62
            I I    ++++   TKRK+V RL++  S+ E L QA+D   M  WI+ +Q +        
Sbjct: 965  IGINGCLIDISYSETKRKNVFRLTT--SDREFLFQAEDRDDMLAWIKAIQENGNLNDEQT 1022

Query: 63   QSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGA 122
              AS   IS    + N   +S+S      + TE    PSPK++     + +QFR     A
Sbjct: 1023 DQASRVLISKRIKEYNTMMSSSS------NKTE----PSPKAQRQTLSIRQQFR-----A 1067

Query: 123  GSPNSP-HPPYPPGS-----------------NIGVPLQHC----------VSVNLLCPF 154
            G P+    PP   GS                   GV L  C          + V++ C  
Sbjct: 1068 GKPDDDISPPKDKGSWRRIMKKPFEKKPTTGGTFGVRLDDCPPAHNNKYVPLIVDVCCKL 1127

Query: 155  L---------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRL 205
            +           RVPGN AA+SS+ E +NKG +  +  QD +W D+NVISSLLKSFFR+L
Sbjct: 1128 VEDRGLETTGIYRVPGNNAAISSMQEELNKG-NTDIDIQDDKWRDLNVISSLLKSFFRKL 1186

Query: 206  PDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEV 265
            PD L T E Y  FI+A++ EDP  R+ T+K+L+ +LP+HH++TLKY+  HLK V D+SE 
Sbjct: 1187 PDPLFTNEKYNDFIEANRKEDPVERLKTLKRLILDLPDHHYETLKYLSAHLKTVADSSEK 1246

Query: 266  NKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct: 1247 NKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1275

GTPase-activating protein (GAP) for rhoa and cdc42.
Xenopus laevis (taxid: 8355)

>sp|Q6DFG0|RH21A_XENLA Rho GTPase-activating protein 21-A OS=Xenopus laevis GN=arhgap21-a PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 179/340 (52%), Gaps = 62/340 (18%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA-----IA 62
            I I    ++++   TKRKHV RL++  S+ E L QA+D   M  WI+ +Q +        
Sbjct: 968  IGINGCLIDISYSETKRKHVFRLTT--SDREFLFQAEDRDDMLAWIKAIQENGNLNDEQT 1025

Query: 63   QSASESNISPASGQKNRKFASASTSPRKS-SATEATL-----------------PPSPKS 104
              AS   IS    + N   +SAS    +S  A   TL                 P SPK 
Sbjct: 1026 DQASRVLISKRIKEYNTMMSSASNKSEQSPKAPRQTLSIRQPFRATRPDGKLQSPHSPKQ 1085

Query: 105  KTWKGRVAKQ----------FRRIQAGAGSPNSPHPPYP-PGSNIGVPLQHC-------- 145
            ++ +   +K           +RRI        +P    P  G   GV L  C        
Sbjct: 1086 ESERRLFSKDDISPPKDKGSWRRIM------KNPFEKKPITGGTFGVRLDDCPPAHNNKY 1139

Query: 146  --VSVNLLCPFL---------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI 194
              + V++ C  +           RVPGN AA+SS+ E +NK  +  +  QD +W D+NVI
Sbjct: 1140 VPLIVDVCCKLVEERGLEATGIYRVPGNNAAISSMQEDLNKA-NTDIDIQDDKWRDLNVI 1198

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFR+LPD L T E Y  FI+A++ EDP  R+ T+K+L+ +LP+HH++TLKY+  
Sbjct: 1199 SSLLKSFFRKLPDPLFTNEKYNDFIEANRTEDPVERLKTLKRLILDLPDHHYETLKYLSA 1258

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK V DN+E+NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct: 1259 HLKTVADNAELNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1298

GTPase-activating protein (GAP) for rhoa and cdc42.

Xenopus laevis (taxid: 8355)

>sp|Q5T5U3|RHG21_HUMAN Rho GTPase-activating protein 21 OS=Homo sapiens GN=ARHGAP21 PE=1 SV=1

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 183/339 (53%), Gaps = 60/339 (17%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA------- 60
            I +    ++++   TKRK+V RL++  S+ E L QA+D   M  WI+ +Q  +       
Sbjct: 988  ISVNACLIDISYSETKRKNVFRLTT--SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDT 1045

Query: 61   -------IAQSASESN--ISPAS-----------------GQKNRKFASASTSPRKSS-- 92
                   I++   E N  +S A                  G K+     +  SP++ S  
Sbjct: 1046 GVTNRDLISRRIKEYNNLMSKAEQLPKTPRQSLSIRQTLLGAKSEPKTQSPHSPKEESER 1105

Query: 93   ---ATEATLPPSPKSKTWKGRV----AKQFRRIQAGAGSPNSPHPPYPPG-SNIGVPLQH 144
               + + T PP  K  TW+  +     K F +     G+        PP  +N  +PL  
Sbjct: 1106 KLLSKDDTSPPKDKG-TWRKGIPSIMRKTFEKKPTATGTFGVRLDDCPPAHTNRYIPL-- 1162

Query: 145  CVSVNLLCPFL---------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS 195
               V++ C  +           RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVIS
Sbjct: 1163 --IVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVIS 1219

Query: 196  SLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQH 255
            SLLKSFFR+LP+ L T + Y  FI+A++ EDP  R+ T+K+L+H+LPEHH++TLK++  H
Sbjct: 1220 SLLKSFFRKLPEPLFTNDKYADFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAH 1279

Query: 256  LKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            LK V +NSE NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct: 1280 LKTVAENSEKNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1318

Functions as a GTPase-activating protein (GAP) for RHOA and CDC42. Downstream partner of ARF1 which may control Golgi apparatus structure and function. Also required for CTNNA1 recruitment to adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus musculus GN=Arhgap21 PE=1 SV=1

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 183/339 (53%), Gaps = 60/339 (17%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA------- 60
            I +    ++++   TKR++V RL++  S+ E L QA+D   M  WI+ +Q  +       
Sbjct: 982  ISVNACLIDISYSETKRRNVFRLTT--SDCECLFQAEDRDDMLSWIKTIQESSNLNEEDT 1039

Query: 61   -------IAQSASESN----------ISPAS---------GQKNRKFASASTSPRKSS-- 92
                   I++   E N           +P           G K+     +  SP++ S  
Sbjct: 1040 GVTNRDLISRRIKEYNSLLSKTEQLPKTPRQSLSIRQTLLGAKSEPKTQSPHSPKEESER 1099

Query: 93   ---ATEATLPPSPKSKTWK----GRVAKQFRRIQAGAGSPNSPHPPYPPG-SNIGVPLQH 144
               + + T PP  K  TW+      V K F +  A  G+        PP  +N  +PL  
Sbjct: 1100 KLLSKDDTSPPKDKG-TWRRGIPSIVRKTFEKKPAATGTFGVRLDDCPPAHTNRYIPL-- 1156

Query: 145  CVSVNLLCPFL---------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS 195
               V++ C  +           RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVIS
Sbjct: 1157 --IVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVIS 1213

Query: 196  SLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQH 255
            SLLKSFFR+LP+ L T + Y  FI+A++ EDP  R+ T+K+L+H+LPEHHF+TLK++  H
Sbjct: 1214 SLLKSFFRKLPEPLFTNDKYADFIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAH 1273

Query: 256  LKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            LK V +NSE NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct: 1274 LKTVAENSEKNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1312

Functions as a GTPase-activating protein (GAP) for RHOA and CDC42. Downstream partner of ARF1 which may control Golgi apparatus structure and function. Also required for CTNNA1 recruitment to adherens junctions.

Mus musculus (taxid: 10090)

>sp|A2RUV4|RHG21_XENTR Rho GTPase-activating protein 21 OS=Xenopus tropicalis GN=arhgap21 PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 178/339 (52%), Gaps = 60/339 (17%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA-----IA 62
            I I    ++++   TKRK+V RL++  S+ E L QA+D   M  WI+ +Q +        
Sbjct: 982  IGINGCLIDISYSETKRKNVFRLTT--SDREFLFQAEDRDDMLAWIKAIQENGNLNDEQT 1039

Query: 63   QSASESNISPASGQKNRKFASAST----------------SPRKSSATEATL--PPSPKS 104
              AS   IS    + N   +S+S                  P +++  E  L  P SPK 
Sbjct: 1040 DQASRVLISKRIKEYNTMMSSSSNKSEQSPKPSRQTLSIRQPFRATKPEGKLQSPHSPKQ 1099

Query: 105  KTWKGRVAKQ----------FRRIQAGAGSPNSPHPPYPPGSNIGVPLQHC--------- 145
            ++ +   +K           +RRI      P    P    G   GV L  C         
Sbjct: 1100 ESERRLFSKDDISPPKDKGSWRRIMK---KPFEKKPTT--GGTFGVRLDDCPPAHNNKYV 1154

Query: 146  -VSVNLLCPFL---------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS 195
             + V++ C  +           RVPGN AA+SS+ E +NKG    +  QD +W D+NVIS
Sbjct: 1155 PLIVDVCCKLVEDRGLETTGIYRVPGNNAAISSMQEELNKG-STDIDIQDDKWRDLNVIS 1213

Query: 196  SLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQH 255
            SLLKSFFR+LPD L T E Y  FI+A++ EDP  R+ T+K+L+ +LP+HH++TLKY+  H
Sbjct: 1214 SLLKSFFRKLPDPLFTNEKYNDFIEANRTEDPVERLKTLKRLILDLPDHHYETLKYLSAH 1273

Query: 256  LKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            LK V +NSE NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct: 1274 LKAVAENSEKNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1312

GTPase-activating protein (GAP) for rhoa and cdc42.

Xenopus tropicalis (taxid: 8364)

>sp|Q9P227|RHG23_HUMAN Rho GTPase-activating protein 23 OS=Homo sapiens GN=ARHGAP23 PE=1 SV=2

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 178/322 (55%), Gaps = 39/322 (12%)

Query: 10   IGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
            IG   V+++   TKR+HV RL++ +   E L QA+D   M  WIR ++ ++ A+      
Sbjct: 758  IGSCLVDISYSETKRRHVFRLTT-ADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGC 816

Query: 70   ISPASGQK---NRKFASASTSPRKSSATEATLPPSP-KSKTWKGRVAKQFRR--IQAGAG 123
             + A   K   + +  S S+ P+  S+ + +      KS+  K   A+  R   + AG+ 
Sbjct: 817  ANQALISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQSAARGLRTQDLPAGSK 876

Query: 124  SPNSPHPPYPPGSNI------------GVPLQHC--VSVNLLCPFLFP------------ 157
              ++  P  P G NI            GV L+ C   + N   P +              
Sbjct: 877  DDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEECQPATENQRVPLIVAACCRIVEARGLE 936

Query: 158  -----RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT 212
                 RVPGN A VSSL E +N+G    +  QD RW D+NVISSLLKSFFR+LP+ L T 
Sbjct: 937  STGIYRVPGNNAVVSSLQEQLNRG-PGDINLQDERWQDLNVISSLLKSFFRKLPEPLFTD 995

Query: 213  ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN 272
            + Y  FI+A++IED   RM T++KL+ +LP H+++TLK+++ HLK + D+SE NKME RN
Sbjct: 996  DKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRN 1055

Query: 273  LAIMFGPTLVRAGDDNMVTMVS 294
            LA++FGPTLVR  +DNM  MV+
Sbjct: 1056 LALVFGPTLVRTSEDNMTDMVT 1077

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Homo sapiens (taxid: 9606)

>sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus musculus GN=Arhgap23 PE=1 SV=2

 Score =  187 bits (474), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 55/330 (16%)

Query: 10   IGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
            IG   V+++   TKR+HV RL++ +   E L QA+D   M  WIR ++ ++ A+      
Sbjct: 754  IGSCLVDISYSETKRRHVFRLTT-ADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGC 812

Query: 70   ISPASGQK---NRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPN 126
             + A   K   + +  S S+ P+  S        SPK     G +  +F +  A  G   
Sbjct: 813  ANQALISKKLNDYRKVSHSSGPKADS--------SPKGSRGLGGLKSEFLKQTAVRGLRT 864

Query: 127  SPHPP-----------YPPGSNI------------GVPLQHC--VSVNLLCPFLFP---- 157
               PP            P G NI            G+ L+ C   + N   P +      
Sbjct: 865  QEQPPGSKEDSVAAPKTPWGINIIKKNKKAAPRAFGIRLEECQPATENQRVPLIVAACCR 924

Query: 158  -------------RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRR 204
                         RVPGN A VSSL E +N+G  + +  QD RW D+NVISSLLK+FFR+
Sbjct: 925  IVEARGLESTGIYRVPGNNAVVSSLQEQLNRG-PSDINLQDERWQDLNVISSLLKAFFRK 983

Query: 205  LPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE 264
            LP+ L T + Y  FI+A++IED   RM T++KL+ +LP H+++TLK+++ HLK + D+SE
Sbjct: 984  LPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIRDLPGHYYETLKFLVGHLKTIADHSE 1043

Query: 265  VNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
             NKME RNLA++FGPTLVR  +DNM  MV+
Sbjct: 1044 KNKMEPRNLALVFGPTLVRTSEDNMTDMVT 1073

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Mus musculus (taxid: 10090)

>sp|P34288|PAC1_CAEEL GTPase-activating protein pac-1 OS=Caenorhabditis elegans GN=pac-1 PE=1 SV=4

 Score =  157 bits (398), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 104/142 (73%), Gaps = 5/142 (3%)

Query: 158  RVPGNTAAVSSLTEAV-NKGLDASVLEQ----DPRWSDVNVISSLLKSFFRRLPDSLLTT 212
            R+PGNTAAV++L E++ N+G D+  L +    DPRW DVNV+SSLLK F R+LP+ LLT 
Sbjct: 985  RIPGNTAAVNALKESLSNRGFDSVDLSKVESLDPRWRDVNVVSSLLKMFLRKLPEPLLTD 1044

Query: 213  ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN 272
            +LYP FI A++I     R+  ++ L+ +LP  H+ TL++++ HL  +  +S+VNKME RN
Sbjct: 1045 KLYPFFIDANRISTHHNRLHKLRNLLRKLPRPHYDTLRFLIVHLSEITKHSDVNKMECRN 1104

Query: 273  LAIMFGPTLVRAGDDNMVTMVS 294
            LA+MFGP++VR  DDNM TMV+
Sbjct: 1105 LALMFGPSIVRPSDDNMATMVT 1126

GTPase-activating protein for members of the Rho subfamily including Rac1, RhoA and cdc42 and other Ras-related subfamilies including let-60. Mediates radial (inner-outer) polarity and gastrulation by excluding par-6 from contacted cell surfaces; acts by inactivating cdc42 at inner cell surfaces which limits active cdc42 to outer cell surfaces devoid of cell-cell contacts, where cdc42 can bind and recruit par-6.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9BE31|RHG12_MACFA Rho GTPase-activating protein 12 OS=Macaca fascicularis GN=ARHGAP12 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 38/304 (12%)

Query: 8   IDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS 66
           +D+    +E+A  D + +K+V  L +    TELL+Q+D+   +  W + L +    Q+  
Sbjct: 522 VDLKGATIEMASKDKSSKKNVFELKT-RQGTELLIQSDNDTVINDWFKVLSSTINNQAVD 580

Query: 67  -----ESNISPAS----------GQKN-RKFASASTSPRKSSATEA---------TLPPS 101
                E  I P S           QK+ +K  S   S   SS  +          T  P+
Sbjct: 581 TDEGIEEEILPDSPGIEKHDKEKEQKDPKKLRSFKVSSIDSSEQKKTKKNLKKFLTRRPT 640

Query: 102 PKSKTWKGRVAKQF--RRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRV 159
            ++   KG +  Q     +       N   P +     + + ++H     L    ++ RV
Sbjct: 641 LQAVREKGYIKDQVFGSNLANLCQRENGTVPKF-----VKLCIEHVEEYGLDVDGIY-RV 694

Query: 160 PGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI 219
            GN A +  L  AVN   D  +   D +W D++VI+  LK FFR LP+ L T   +  F+
Sbjct: 695 SGNLAVIQKLRFAVNH--DEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFV 752

Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
            A K ++P  R+A +K L+ +LP+ +  T++ + +HLKRVV+N E N+M  +++AI+FGP
Sbjct: 753 NAIK-QEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKRVVENGEKNRMTYQSIAIVFGP 811

Query: 280 TLVR 283
           TL++
Sbjct: 812 TLLK 815

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Macaca fascicularis (taxid: 9541)

>sp|Q6TLK4|RHG27_RAT Rho GTPase-activating protein 27 OS=Rattus norvegicus GN=Arhgap27 PE=1 SV=1

 Score =  105 bits (261), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 2/126 (1%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R+ GN A +  L   V+   D  +   D RW DV+VI+  LK FFR LP+ L     +  
Sbjct: 713 RISGNLATIQKLRYKVDH--DERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQ 770

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           FI A K++DPA R   ++ LV  LP  +  TL+ ++QHL RV+++ E N+M  +N+AI+F
Sbjct: 771 FIAAIKLQDPAQRSRCVRDLVRTLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQNVAIVF 830

Query: 278 GPTLVR 283
           GPTL+R
Sbjct: 831 GPTLLR 836

Rho GTPase-activating protein which may be involved in clathrin-mediated endocytosis. GTPase activators for the Rho-type GTPases act by converting them to an inactive GDP-bound state. Has activity toward CDC42 and RAC1.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
307177152	2144	Rho GTPase-activating protein 21 [Campon	0.965	0.132	0.5	5e-81
322779062	2004	hypothetical protein SINV_10618 [Solenop	0.986	0.144	0.480	6e-80
328723161	1594	PREDICTED: hypothetical protein LOC10057	0.989	0.182	0.511	1e-79
328723157	1581	PREDICTED: hypothetical protein LOC10057	0.989	0.184	0.511	1e-79
328723159	1658	PREDICTED: hypothetical protein LOC10057	0.989	0.175	0.511	1e-79
328723163	1671	PREDICTED: hypothetical protein LOC10057	0.989	0.174	0.511	2e-79
328723167	1434	PREDICTED: hypothetical protein LOC10057	0.989	0.202	0.511	3e-79
328723165	1421	PREDICTED: hypothetical protein LOC10057	0.989	0.204	0.511	3e-79
340720520	1887	PREDICTED: hypothetical protein LOC10064	0.965	0.150	0.479	5e-77
332021331	2100	Rho GTPase-activating protein 21 [Acromy	0.982	0.137	0.484	5e-77

>gi|307177152|gb|EFN66385.1| Rho GTPase-activating protein 21 [Camponotus floridanus]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/352 (50%), Positives = 227/352 (64%), Gaps = 68/352 (19%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
            +D+  + V+VA DYTKRKHVLR+++P++  E+LLQ +D  +MA W+R L +HA A+ +S+
Sbjct: 967  VDVRCSVVDVAEDYTKRKHVLRVANPTA--EVLLQTEDAASMALWLRSLHSHAAAERSSD 1024

Query: 68   S----------------------NISPASGQK-----NRKFASASTSPRKSSAT------ 94
            +                      ++SP++GQK     N K     TS R  S T      
Sbjct: 1025 AVSCTSKQQAVPQTPTGPTTPSGSVSPSNGQKLSPLPNHKGIKKLTSFRNRSPTGQSPVN 1084

Query: 95   ------EATLPP--SPKSKTWKGRVAKQFRRI--QAGAGSPNSPHPPYPP-GSNIGVPLQ 143
                    TL P  SPKSKTWKGR+AKQF+++  QAG G+P+SP    PP G+   VPL+
Sbjct: 1085 KTRKPSNQTLEPLPSPKSKTWKGRMAKQFKKMHSQAG-GAPSSPTAQMPPEGATFKVPLE 1143

Query: 144  HCVSVNL---------LCPFLFP----------RVPGNTAAVSSLTEAVNKGLDASVLEQ 184
             C              +C  +            RVPGNTAA+S LT++VNKG +   L+ 
Sbjct: 1144 LCPQSTFSEYVPLIVEMCTSIVEARGLEVVGIYRVPGNTAAISQLTDSVNKGFENINLQM 1203

Query: 185  DPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEH 244
            DPRWSDVNVISSLLKSFFR+LPDSLLT ELYP FI ADKIEDP  RM TI+KL+ +LPEH
Sbjct: 1204 DPRWSDVNVISSLLKSFFRQLPDSLLTAELYPMFIDADKIEDPQRRMITIRKLLRDLPEH 1263

Query: 245  HFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DNMVTMVS 294
            HF+TLKY++QHLK++VD+SE+NKMEA+NLAI+FGPTLVRA    DNMVTMV+
Sbjct: 1264 HFETLKYLMQHLKKIVDHSEINKMEAKNLAIVFGPTLVRASGSRDNMVTMVT 1315

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779062|gb|EFZ09456.1| hypothetical protein SINV_10618 [Solenopsis invicta]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 171/356 (48%), Positives = 223/356 (62%), Gaps = 66/356 (18%)

Query: 2    TGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61
            T + + +D+  + V+VA DYTKRKHVLR+++P++  E+LLQ +D  +MA W+R L +HA 
Sbjct: 830  TNAGQSVDVRCSVVDVAEDYTKRKHVLRVANPTA--EVLLQTEDAASMALWLRSLHSHAA 887

Query: 62   AQSASES------------------------------NISPASGQKN-------RKFASA 84
            A+ +S++                               +SP  G K        R  +  
Sbjct: 888  AERSSDAVSCTSKQQAVPQTPTGPTTPNSGVPPSNAQRLSPLPGHKGIKKLTSFRNRSPT 947

Query: 85   STSP----RKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPP-GSNIG 139
              SP    RK S       PSPKSKTWKGR+AKQFR++   AG+P+SP    PP G+   
Sbjct: 948  GQSPVNKTRKPSTQMVEPLPSPKSKTWKGRMAKQFRKMHGQAGAPSSPTAQLPPEGATFK 1007

Query: 140  VPLQHC--VSVNLLCPFLFP-----------------RVPGNTAAVSSLTEAVNKGLDAS 180
            VPL+ C   S +   P +                   RVPGNTAA++ LT++VN+G +  
Sbjct: 1008 VPLELCPPSSFSEYVPLIVEMCTSIVEARGLEVVGIYRVPGNTAAIAQLTDSVNRGFENI 1067

Query: 181  VLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHE 240
             L QDPRWSDVNVISSLLKSFFR+LPDSLLT +LYP FI ADKIEDP  RM TI+KL+ +
Sbjct: 1068 NL-QDPRWSDVNVISSLLKSFFRQLPDSLLTADLYPMFIDADKIEDPQRRMTTIRKLLRD 1126

Query: 241  LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DNMVTMVS 294
            LPEHHF+TLKY++QHLK++V++SEVNKMEA+NLAI+FGPTLVRA    DNMVTMV+
Sbjct: 1127 LPEHHFETLKYLMQHLKKIVEHSEVNKMEAKNLAIVFGPTLVRASGSRDNMVTMVT 1182

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723161|ref|XP_003247775.1| PREDICTED: hypothetical protein LOC100574987 isoform 3 [Acyrthosiphon pisum]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 677  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 736

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 737  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 796

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 797  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 856

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 857  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 916

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 917  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 976

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 977  HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1016

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723157|ref|XP_003247773.1| PREDICTED: hypothetical protein LOC100574987 isoform 1 [Acyrthosiphon pisum]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 664  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 723

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 724  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 783

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 784  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 843

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 844  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 903

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 904  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 963

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 964  HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1003

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723159|ref|XP_003247774.1| PREDICTED: hypothetical protein LOC100574987 isoform 2 [Acyrthosiphon pisum]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 741  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 800

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 801  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 860

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 861  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 920

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 921  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 980

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 981  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 1040

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 1041 HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1080

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723163|ref|XP_003247776.1| PREDICTED: hypothetical protein LOC100574987 isoform 4 [Acyrthosiphon pisum]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 754  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 813

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 814  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 873

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 874  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 933

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 934  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 993

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 994  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 1053

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 1054 HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1093

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723167|ref|XP_003247778.1| PREDICTED: hypothetical protein LOC100574987 isoform 6 [Acyrthosiphon pisum]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 754  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 813

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 814  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 873

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 874  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 933

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 934  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 993

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 994  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 1053

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 1054 HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1093

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723165|ref|XP_003247777.1| PREDICTED: hypothetical protein LOC100574987 isoform 5 [Acyrthosiphon pisum]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 224/340 (65%), Gaps = 49/340 (14%)

Query: 4    SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHA 60
            SC+RI++  +  +VA DYTKRKHV+RL S   +   TELLLQADDT +M  W++ LQ  A
Sbjct: 741  SCDRINLRTSTTDVAHDYTKRKHVMRLCSSVVDMGCTELLLQADDTSSMVRWLKALQEQA 800

Query: 61   IAQSASES-----NISPASGQKNRKFA----------SASTSPRK--SSATEATLPPSPK 103
            +   A  S     +ISP + +  RK            S  T  RK   S  +++ P SPK
Sbjct: 801  LEAQAPLSAEECLSISPGNTKGMRKLGTFRNRSPTGDSPITKTRKPDRSPCQSSQPQSPK 860

Query: 104  S-KTWKGRVAKQFRRIQAGAGSPNSPHPPYPP---GSNIGVPLQHC--VSVNLLCPFLFP 157
            S  TWK R+AKQ ++IQ G+GSP SP  P  P   G+ IG+PL+ C   + +   P +  
Sbjct: 861  STNTWKNRMAKQLKKIQQGSGSPVSPIMPTLPPPPGTAIGIPLELCPPSTRSEFVPLIVE 920

Query: 158  -----------------RVPGNTAAVSSLTEAVNKG------LDASVLEQDPRWSDVNVI 194
                             RVPGNTAA++SLTEAVN G      +   +L++DPRW+DVNVI
Sbjct: 921  VCTSIVEEKGLDIIGIYRVPGNTAAITSLTEAVNNGGMETPDMALKLLQRDPRWTDVNVI 980

Query: 195  SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQ 254
            SSLLKSFFRRLPD+LLTTE+YPHFI+ADKI+DP  RM  +++LVH+LPEHHF+TL+Y+L 
Sbjct: 981  SSLLKSFFRRLPDALLTTEMYPHFIEADKIDDPVQRMVKLRELVHKLPEHHFETLRYLLM 1040

Query: 255  HLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
            HLK+VV +S VNKMEARNLAI+FGPTLV + DDNMVTMV+
Sbjct: 1041 HLKKVVHHSGVNKMEARNLAIVFGPTLVHSADDNMVTMVT 1080

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720520|ref|XP_003398684.1| PREDICTED: hypothetical protein LOC100645999 [Bombus terrestris]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 174/363 (47%), Positives = 214/363 (58%), Gaps = 79/363 (21%)

Query: 8    IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
            +D+  + V++A DYTKRKHVLRL++P  N E+LLQ +D  +MA W+R L  HA A+  SE
Sbjct: 664  VDVRCSLVDIAEDYTKRKHVLRLANP--NAEVLLQTEDAASMALWLRALHEHAAAEKPSE 721

Query: 68   --------------------------------------------SNISPASGQKN-RKFA 82
                                                          +SP  G K  +K  
Sbjct: 722  IAHNSTLKQQAVPQTPGPTSSSSTCQTTTNASPMTMSTGSGSGGQRLSPLPGHKGIKKLT 781

Query: 83   S-ASTSPRKSSATEATLPPS--------PKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYP 133
            S  + SP   S    T  PS        PK+KTWKGRVAKQ RR+    GSP+SP    P
Sbjct: 782  SFRNRSPTGQSPINKTRKPSQTIDSLVSPKTKTWKGRVAKQLRRMHGQTGSPSSPTTQLP 841

Query: 134  P-GSNIGVPLQHC--VSVNLLCPFLFP-----------------RVPGNTAAVSSLTEAV 173
            P G+   VPL+ C   S +   P +                   RVPGNTAA+S LT++V
Sbjct: 842  PEGATFKVPLELCPPSSFSEYVPLIVEMCTSIVEARGLEVVGIYRVPGNTAAISHLTDSV 901

Query: 174  NKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMAT 233
            NKG +   L QDPRWSDVNVISSLLKSFFR+LPDSLLT ELYP FI ADK+EDP  RM T
Sbjct: 902  NKGFENINL-QDPRWSDVNVISSLLKSFFRQLPDSLLTAELYPMFIDADKVEDPQRRMTT 960

Query: 234  IKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DNMVT 291
            I+KL+ +LPEHHF+TLKY++ HLKR+V++SEVNKMEA+NLAI+FGPTLVRA    DNMVT
Sbjct: 961  IRKLLRDLPEHHFETLKYLMFHLKRIVEHSEVNKMEAKNLAIVFGPTLVRASGSRDNMVT 1020

Query: 292  MVS 294
            MV+
Sbjct: 1021 MVT 1023

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021331|gb|EGI61705.1| Rho GTPase-activating protein 21 [Acromyrmex echinatior]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 172/355 (48%), Positives = 226/355 (63%), Gaps = 66/355 (18%)

Query: 2    TGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61
            T + + +D+  + V+VA DYTKRKHVLR+++P++  E+LLQ +D  +MA W+R L +HA 
Sbjct: 931  TNAGQSVDVRCSVVDVAEDYTKRKHVLRVANPTA--EVLLQTEDAASMALWLRSLHSHAA 988

Query: 62   AQSASE-------------------SNISPASGQK---------------NRKFASASTS 87
            A+ +S+                   S+I P++ Q+                R  +    S
Sbjct: 989  AEKSSDAVSCTSKQQAVPQTPTTPNSSIPPSNIQRLSPLPSHKGIKKLTSFRNRSPTGQS 1048

Query: 88   P----RKSSATEATLPPSPKSKTWKGRVAKQFRRI--QAGAGSPNSPHPPYPP-GSNIGV 140
            P    RK S       PSPKSKTWKGR+AKQFRR+  QAG G+P+SP    PP G+   V
Sbjct: 1049 PVNKTRKPSNQIVEPLPSPKSKTWKGRMAKQFRRMHGQAG-GAPSSPTAQLPPEGATFKV 1107

Query: 141  PLQHC--VSVNLLCPFLFP-----------------RVPGNTAAVSSLTEAVNKGLDASV 181
            PL+ C   S +   P +                   RVPGNTAA++ LT++VN+G +   
Sbjct: 1108 PLELCPPSSFSEYVPLIVEMCTSIVEARGLEVVGIYRVPGNTAAIAQLTDSVNRGFENIN 1167

Query: 182  LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHEL 241
            L QDPRWSDVNVISSLLKSFFR+LPDSLLT ELYP FI ADKIEDP  RM TI+KL+ +L
Sbjct: 1168 L-QDPRWSDVNVISSLLKSFFRQLPDSLLTAELYPMFIDADKIEDPQRRMTTIRKLLRDL 1226

Query: 242  PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DNMVTMVS 294
            PE HF+TLK+++QHLK++V++SE+NKMEA+NLAI+FGPTLVRA    DNMVTMV+
Sbjct: 1227 PEPHFETLKFLMQHLKKIVEHSEINKMEAKNLAIVFGPTLVRASGSRDNMVTMVT 1281

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
ZFIN|ZDB-GENE-091113-11	1222	si:dkey-29n19.1 "si:dkey-29n19	0.741	0.178	0.440	1.7e-47
ZFIN|ZDB-GENE-090918-5	1953	arhgap21a "Rho GTPase activati	0.741	0.111	0.440	7.5e-47
UNIPROTKB|F1NS04	1955	ARHGAP21 "Uncharacterized prot	0.459	0.069	0.601	1.3e-46
UNIPROTKB|F1PJH8	1848	ARHGAP21 "Uncharacterized prot	0.462	0.073	0.598	2.1e-46
UNIPROTKB|J9P9F1	1881	ARHGAP21 "Uncharacterized prot	0.462	0.072	0.598	2.2e-46
MGI|MGI:1918685	1944	Arhgap21 "Rho GTPase activatin	0.462	0.069	0.605	8.2e-46
RGD|1311028	1915	Arhgap21 "Rho GTPase activatin	0.462	0.071	0.605	1e-45
UNIPROTKB|F1LXQ7	1925	Arhgap21 "Protein Arhgap21" [R	0.462	0.070	0.605	1e-45
UNIPROTKB|I3LDR4	1930	ARHGAP21 "Uncharacterized prot	0.462	0.070	0.598	1e-45
UNIPROTKB|F1MHG5	1941	ARHGAP21 "Uncharacterized prot	0.465	0.070	0.579	1.3e-45

ZFIN|ZDB-GENE-091113-11 si:dkey-29n19.1 "si:dkey-29n19.1" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 1.7e-47, Sum P(2) = 1.7e-47
 Identities = 104/236 (44%), Positives = 138/236 (58%)

Query:    75 GQKNRKFASASTSP-----RKSSATEATLPPSPKSKTWK----GRVAKQF-RRIQAGAXX 124
             G K    A++  SP     RK+   + T PP  K  TW+    G + K F ++   G   
Sbjct:   369 GGKGENKATSPHSPNKEHDRKAMHKDETSPPKDKG-TWRKGIPGLMRKPFEKKPSPGVTF 427

Query:   125 XXXXXXXXXXXXXIGVPLQHCVSVNLL----CPFL-FPRVPGNTAAVSSLTEAVN-KGLD 178
                            VPL   V  NL+      +    RVPGN AA+S + E +N KG+ 
Sbjct:   428 GVRLDDCPPAQNNRFVPLIVEVCCNLVEERGLEYTGIYRVPGNNAAISIMQEELNNKGM- 486

Query:   179 ASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLV 238
             A +  QD +W D+NVISSLLKSFFR+LP+ L T E Y  FI  ++IEDP  R+  +K+L+
Sbjct:   487 ADIDIQDDKWKDLNVISSLLKSFFRKLPEPLFTNERYADFIDGNRIEDPVERLKVLKRLL 546

Query:   239 HELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
             HELP+HH++TLK++  HLK V +NSE NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct:   547 HELPDHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 602

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-090918-5 arhgap21a "Rho GTPase activating protein 21a" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 7.5e-47, Sum P(2) = 7.5e-47
 Identities = 104/236 (44%), Positives = 138/236 (58%)

Query:    75 GQKNRKFASASTSP-----RKSSATEATLPPSPKSKTWK----GRVAKQF-RRIQAGAXX 124
             G K    A++  SP     RK+   + T PP  K  TW+    G + K F ++   G   
Sbjct:  1100 GGKGENKATSPHSPNKEHDRKAMHKDETSPPKDKG-TWRKGIPGLMRKPFEKKPSPGVTF 1158

Query:   125 XXXXXXXXXXXXXIGVPLQHCVSVNLL----CPFL-FPRVPGNTAAVSSLTEAVN-KGLD 178
                            VPL   V  NL+      +    RVPGN AA+S + E +N KG+ 
Sbjct:  1159 GVRLDDCPPAQNNRFVPLIVEVCCNLVEERGLEYTGIYRVPGNNAAISIMQEELNNKGM- 1217

Query:   179 ASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLV 238
             A +  QD +W D+NVISSLLKSFFR+LP+ L T E Y  FI  ++IEDP  R+  +K+L+
Sbjct:  1218 ADIDIQDDKWKDLNVISSLLKSFFRKLPEPLFTNERYADFIDGNRIEDPVERLKVLKRLL 1277

Query:   239 HELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
             HELP+HH++TLK++  HLK V +NSE NKME RNLAI+FGPTLVR  +DNM  MV+
Sbjct:  1278 HELPDHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLVRTSEDNMTHMVT 1333

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|F1NS04 ARHGAP21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 437 (158.9 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
 Identities = 83/138 (60%), Positives = 106/138 (76%)

Query:   158 RVPGNTAAVSSLTEAVNKGL-DASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
             RVPGN AA+SS+ E +NKG+ D  V   D +W D+NVISSLLKSFFR+LP+ L T + Y 
Sbjct:  1170 RVPGNNAAISSMQEELNKGMTDIDV--HDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYA 1227

Query:   217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
              FI A++ EDP  R+ T+K+L+H+LPEHH++TLK++  HLK V +NSE NKME RNLAI+
Sbjct:  1228 DFIDANRKEDPVERLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIV 1287

Query:   277 FGPTLVRAGDDNMVTMVS 294
             FGPTLVR  DDNM  MV+
Sbjct:  1288 FGPTLVRTSDDNMTHMVT 1305

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA

GO:0051684 "maintenance of Golgi location" evidence=IEA

GO:0072384 "organelle transport along microtubule" evidence=IEA

UNIPROTKB|F1PJH8 ARHGAP21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 441 (160.3 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1165 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1223

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHH++TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1224 FIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1283

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1284 GPTLVRTSEDNMTHMVT 1300

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|J9P9F1 ARHGAP21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 441 (160.3 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1190 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1248

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHH++TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1249 FIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1308

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1309 GPTLVRTSEDNMTHMVT 1325

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

MGI|MGI:1918685 Arhgap21 "Rho GTPase activating protein 21" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 8.2e-46, Sum P(2) = 8.2e-46
 Identities = 83/137 (60%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1177 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1235

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHHF+TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1236 FIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1295

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1296 GPTLVRTSEDNMTHMVT 1312

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=ISO

GO:0051684 "maintenance of Golgi location" evidence=ISO

GO:0072384 "organelle transport along microtubule" evidence=ISO

RGD|1311028 Arhgap21 "Rho GTPase activating protein 21" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
 Identities = 83/137 (60%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1152 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1210

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHHF+TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1211 FIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1270

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1271 GPTLVRTSEDNMTHMVT 1287

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0007030 "Golgi organization" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA;ISO

GO:0051684 "maintenance of Golgi location" evidence=IEA;ISO

GO:0072384 "organelle transport along microtubule" evidence=IEA;ISO

UNIPROTKB|F1LXQ7 Arhgap21 "Protein Arhgap21" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
 Identities = 83/137 (60%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1162 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1220

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHHF+TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1221 FIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1280

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1281 GPTLVRTSEDNMTHMVT 1297

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA

GO:0051684 "maintenance of Golgi location" evidence=IEA

GO:0072384 "organelle transport along microtubule" evidence=IEA

UNIPROTKB|I3LDR4 ARHGAP21 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 441 (160.3 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
             RVPGN AA+SS+ E +NKG+ A +  QD +W D+NVISSLLKSFFR+LP+ L T + Y  
Sbjct:  1163 RVPGNNAAISSMQEELNKGM-ADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYAD 1221

Query:   218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
             FI+A++ EDP  R+ T+K+L+H+LPEHH++TLK++  HLK V +NSE NKME RNLAI+F
Sbjct:  1222 FIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVF 1281

Query:   278 GPTLVRAGDDNMVTMVS 294
             GPTLVR  +DNM  MV+
Sbjct:  1282 GPTLVRTSEDNMTHMVT 1298

GO:0072384 "organelle transport along microtubule" evidence=IEA

GO:0051684 "maintenance of Golgi location" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1MHG5 ARHGAP21 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 439 (159.6 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
 Identities = 80/138 (57%), Positives = 108/138 (78%)

Query:   158 RVPGNTAAVSSLTEAVNKGL-DASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
             RVPGN AA+SS+ E +NKG+ D  + + + +W D+NVISSLLKSFFR+LP+ L T + Y 
Sbjct:  1166 RVPGNNAAISSMQEELNKGMADIDIQDDNQKWRDLNVISSLLKSFFRKLPEPLFTNDKYA 1225

Query:   217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
              FI+A++ EDP  R+ T+K+L+H+LPEHH++TLK++  HLK V +NSE NKME RNLAI+
Sbjct:  1226 DFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIV 1285

Query:   277 FGPTLVRAGDDNMVTMVS 294
             FGPTLVR  +DNM  MV+
Sbjct:  1286 FGPTLVRTSEDNMTHMVT 1303

GO:0072384 "organelle transport along microtubule" evidence=IEA

GO:0051684 "maintenance of Golgi location" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34288	PAC1_CAEEL	No assigned EC number	0.5140	0.4659	0.0853	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	294
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	9e-76
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	2e-48
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	4e-45
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	1e-43
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	2e-36
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	2e-36
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	4e-32
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	1e-30
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	1e-27
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	1e-27
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	2e-27
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	1e-25
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	2e-25
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	2e-25
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	2e-24
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	1e-23
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	1e-22
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	2e-22
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	5e-22
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	2e-21
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	2e-21
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	1e-19
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	1e-19
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	2e-19
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	5e-19
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	3e-18
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	3e-17
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	4e-17
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	1e-16
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	3e-16
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	4e-15
cd01253	113	cd01253, PH_ARHGAP21-like, ARHGAP21 and related pr	5e-15
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	1e-14
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	8e-13
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	1e-12
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	6e-12
cd10571	105	cd10571, PH_beta_spectrin, Beta-spectrin pleckstri	3e-09
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	1e-08
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	3e-08
cd13295	126	cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckst	1e-05
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	3e-05
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	9e-05
cd04401	198	cd04401, RhoGAP_fMSB1, RhoGAP_fMSB1: RhoGAP (GTPas	0.002

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score =  229 bits (586), Expect = 9e-76
 Identities = 96/176 (54%), Positives = 121/176 (68%), Gaps = 20/176 (11%)

Query: 138 IGVPLQHC--VSVNLLCPFLFP-----------------RVPGNTAAVSSLTEAVNKGLD 178
            GVPL  C   S N   P +                   RVPGN AA+S+L E +N+G  
Sbjct: 2   FGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGF 61

Query: 179 ASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLV 238
              L QDPRW DVNV+SSLLKSFFR+LP+ L T ELYP FI+A++IEDP  R+  +++L+
Sbjct: 62  DIDL-QDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI 120

Query: 239 HELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
           H LP+HH++TLK++++HLK V DNSEVNKME RNLAI+FGPTLVR  DDNM TMV+
Sbjct: 121 HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNMETMVT 176

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  158 bits (401), Expect = 2e-48
 Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 8/153 (5%)

Query: 141 PLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS 196
            ++ CV       L    +F RV G+ + +  L EA + G     ++ D    DV+V++S
Sbjct: 3   IVEKCVEFLEKRGLDTEGIF-RVSGSASRIKELREAFDSG---EDVDLDLEEEDVHVVAS 58

Query: 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHL 256
           LLK F R LP+ LLT ELY  FI+A K ED   R+  +++L+ +LP  +  TL+Y+L HL
Sbjct: 59  LLKLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHL 118

Query: 257 KRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289
            RV  NSEVNKM A NLAI+FGPTL+R  DD  
Sbjct: 119 NRVAQNSEVNKMNAHNLAIVFGPTLLRPPDDES 151

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  150 bits (380), Expect = 4e-45
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 136 SNIGVPLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDV 191
             I + ++ C+       L    ++ RV G+ + V  L +A + G D  +   +    DV
Sbjct: 1   KPIPIIVEKCIEYLEKRGLDTEGIY-RVSGSKSRVKELRDAFDSGPDPDLDLSE---YDV 56

Query: 192 NVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKY 251
           + ++ LLK F R LP+ L+T ELY  FI+A K+ED   R+  +++L+  LP  +  TL+Y
Sbjct: 57  HDVAGLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRY 116

Query: 252 ILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
           +L HL RV ++SE NKM ARNLAI+FGPTL+R  D  + ++
Sbjct: 117 LLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASL 157

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  146 bits (370), Expect = 1e-43
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 5/144 (3%)

Query: 149 NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS 208
            L    +F RV G+ + +  L +  ++G D      D    DV+ ++SLLK + R LP+ 
Sbjct: 15  GLNTEGIF-RVSGSASKIEELKKKFDRGEDI----DDLEDYDVHDVASLLKLYLRELPEP 69

Query: 209 LLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM 268
           L+  ELY  FI+  KIED   R+  +K+L+  LP  +   LKY+L+ L ++  NSEVNKM
Sbjct: 70  LIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKM 129

Query: 269 EARNLAIMFGPTLVRAGDDNMVTM 292
            A NLAI+F PTL+R  D +   +
Sbjct: 130 TASNLAIVFAPTLLRPPDSDDELL 153

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score =  128 bits (324), Expect = 2e-36
 Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 1/136 (0%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRW-SDVNVISSLLKSFFRRLPDSLLTTELYP 216
           R+ GN + V+ L E  +K     +L     + SD++ ++SLLK FFR LP+ LLT  L  
Sbjct: 39  RLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSR 98

Query: 217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
            FI+A KIED + R   +  L+++LP+ ++ TL+ ++ HL R+ ++  VN+M   NLAI+
Sbjct: 99  EFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158

Query: 277 FGPTLVRAGDDNMVTM 292
           +GPTL+ A  DN   M
Sbjct: 159 WGPTLMNAAPDNAADM 174

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score =  128 bits (323), Expect = 2e-36
 Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV GN A +  L  AV+   D  +   D +W D++VI+  LK FFR LP+ L    L+  
Sbjct: 39  RVSGNLAVIQKLRFAVDH--DEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFND 96

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F+ A K+ D   R++ +K L+  LP+ +  TLK + +HL RV+++ E N+M  +NLAI+F
Sbjct: 97  FVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVF 156

Query: 278 GPTLVRAGDDN---MVTMV 293
           GPTL+R   +     V MV
Sbjct: 157 GPTLLRPEQETGNIAVHMV 175

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score =  117 bits (294), Expect = 4e-32
 Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G    +  +  A ++  + + +     + D+NVI+  LK +FR LP  ++T + YP 
Sbjct: 39  RVSGFAEEIEDVKMAFDRDGEKADISAT-VYPDINVITGALKLYFRDLPIPVITYDTYPK 97

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           FI A KI +P  R+  + + +  LP  H++TL+Y+++HLKRV  + + NKM A NL I+F
Sbjct: 98  FIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVF 157

Query: 278 GPTLVRAGDDNMVT 291
           GPTL+R  +D+ +T
Sbjct: 158 GPTLMRPPEDSALT 171

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score =  113 bits (284), Expect = 1e-30
 Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   NT  V  + +  N G      + +    DV++ + +LK+F R LP+ LLT +LY  
Sbjct: 46  RRSANTQVVKEVQQKYNMGEPVDFDQYE----DVHLPAVILKTFLRELPEPLLTFDLYDD 101

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +    ++    R+  +K+L+  LPE ++Q LKY+++ L +V  +S+ NKM   NLA++F
Sbjct: 102 IVGFLNVDK-EERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160

Query: 278 GPTLVRAGDDNM 289
           GP L+ A D +M
Sbjct: 161 GPNLLWAKDASM 172

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score =  106 bits (265), Expect = 1e-27
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 7/162 (4%)

Query: 135 GSNIGVPLQHCVSVNLLCPF----LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSD 190
           G  I +P++ CV   L        LF RV G  + +  L  A++ G     L  D  +SD
Sbjct: 17  GREIALPIEACVMCLLETGMNEEGLF-RVGGGASKLKRLKAALDAG--TFSLPLDEFYSD 73

Query: 191 VNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLK 250
            + ++S LKS+ R LPD LLT  LY  ++QA    D   R+  I +++++LP  +   L+
Sbjct: 74  PHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLR 133

Query: 251 YILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
           Y+++ L ++   S+ NKM   N+AI+  P L+ A ++  +  
Sbjct: 134 YLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAE 175

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score =  105 bits (264), Expect = 1e-27
 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 158 RVPGNTAAVSSLTEAV--NKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY 215
           RV G  + V  L       K      ++ D    ++  I+S LK++ R LP+ L+T EL+
Sbjct: 51  RVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELH 110

Query: 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI 275
             FI A K E+  +R+  I  LVH+LPE + + L+ +++HL  V D+S+ N M   NL +
Sbjct: 111 NDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGV 170

Query: 276 MFGPTLVRAGDDNMVTM 292
           +FGPTL+R  ++ +  +
Sbjct: 171 VFGPTLLRPQEETVAAI 187

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score =  104 bits (262), Expect = 2e-27
 Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R+ G+ + +  L E  N   D  +      + DV+ ++ LLK + R LP  +L  EL+  
Sbjct: 46  RLSGSASVIKQLKERFNTEYDVDLF-SSSLYPDVHTVAGLLKLYLRELPTLILGGELHND 104

Query: 218 FIQ-ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
           F +  ++  D + R   +K LV +LP+ ++  L  +   L++++++S+VNKM  RN+ I+
Sbjct: 105 FKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIV 164

Query: 277 FGPTL 281
           F PTL
Sbjct: 165 FSPTL 169

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score =  100 bits (250), Expect = 1e-25
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 158 RVPGNTAAVSSLTEAVN-KGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
           R+ G    + +L  A +    D SV+  +    DVN I+  LK +FR LP+ L T ELYP
Sbjct: 39  RISGVATDIQALKAAFDTNNKDVSVMLSE---MDVNAIAGTLKLYFRELPEPLFTDELYP 95

Query: 217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
           +F +   + DP  + + +  L+  LP+ +  T  ++L HLKRV +  EVNKM   NLA +
Sbjct: 96  NFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATV 155

Query: 277 FGPTLVR 283
           FGPTL+R
Sbjct: 156 FGPTLLR 162

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 99.5 bits (248), Expect = 2e-25
 Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 3/132 (2%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV GN   + SL +  ++  +  ++ +D     VN ++  LKSFF  LPD L+   ++  
Sbjct: 38  RVSGNKTHLDSLQKQFDQDHNLDLVSKD---FTVNAVAGALKSFFSELPDPLIPYSMHLE 94

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            ++A KI D   R+  +K+L+ + P  +F   KY++ HL +V  NS+VN M + NL+I F
Sbjct: 95  LVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICF 154

Query: 278 GPTLVRAGDDNM 289
            PTL+R    +M
Sbjct: 155 WPTLMRPDFTSM 166

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 99.3 bits (248), Expect = 2e-25
 Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R  G  ++V  L EA  K  DA  ++       V+ ++ +LK F R LPD LLT+EL+  
Sbjct: 38  RKNGKNSSVKKLLEAFRK--DARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSELHAE 95

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           +I+A ++E+   R+A  K+L+  LP  +  TLK ++ HL RV  +S+ N+M   NLA++F
Sbjct: 96  WIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVF 155

Query: 278 GPTLVRAGDD 287
           GPTL +  + 
Sbjct: 156 GPTLFQTDEH 165

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 96.7 bits (241), Expect = 2e-24
 Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R  G+   +  L + ++   D+  LE  P    ++VI+S+LK + R LP+ L+T ELY +
Sbjct: 38  RKSGSANKIKELRQGLDTDPDSVNLEDYP----IHVITSVLKQWLRELPEPLMTFELYEN 93

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A ++E+   R+  +  ++ +LP  +  TL+ ++ HL RV    EVN+M A  LAI+F
Sbjct: 94  FLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVF 153

Query: 278 GPTLVRAGD 286
            P ++R  D
Sbjct: 154 APCILRCPD 162

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 94.9 bits (236), Expect = 1e-23
 Identities = 37/103 (35%), Positives = 63/103 (61%)

Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHEL 241
           L +D    D++ +SSL K +FR LP+ LLT +LY  F +A        R+  I  ++ +L
Sbjct: 63  LTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQL 122

Query: 242 PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 284
           P  H++TL+++++HL R+     +  M A+NLAI++ P L+R+
Sbjct: 123 PPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRS 165

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G+   V +L E   +G     L +     D++VI   LK F R L + L+T  L+  
Sbjct: 40  RVSGSEREVKALKEKFLRGKTVPNLSK----VDIHVICGCLKDFLRSLKEPLITFALWKE 95

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A +I D     A + + + ELP+ +  TL +++ HL+RV   S   KM+  NLA +F
Sbjct: 96  FMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVF 154

Query: 278 GPTLV 282
           GPT+V
Sbjct: 155 GPTIV 159

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNV--ISSLLKSFFRRLPDSLLTTELY 215
           R+PG+   V  L +     L+A   E    W  V     +SLLK F R LP  LLT E  
Sbjct: 45  RIPGSAQRVKFLCQE----LEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYL 100

Query: 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI 275
           P F     +     ++  +  LV  LPE +  TLK +L+ L++VVD+ E NKM   N+A+
Sbjct: 101 PAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160

Query: 276 MFGPTL 281
           +  P L
Sbjct: 161 IMAPNL 166

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 90.9 bits (226), Expect = 5e-22
 Identities = 57/153 (37%), Positives = 78/153 (50%), Gaps = 21/153 (13%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVL-EQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
           RV G+ A V  L +A   G D   L E  P     + ISS+LK F R+LP+ L+   LY 
Sbjct: 39  RVSGSKARVEKLCQAFENGKDLVELSELSP-----HDISSVLKLFLRQLPEPLILFRLYN 93

Query: 217 HFI------QADKIEDPATRMAT--------IKKLVHELPEHHFQTLKYILQHLKRVVDN 262
            FI      Q D  ED A             +K L+ +LP  ++ TL++++ HL RV + 
Sbjct: 94  DFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQ 153

Query: 263 SEVNKMEARNLAIMFGPTLVRAGD-DNMVTMVS 294
            E NKM   NL I+FGPTL+R    D  V++ S
Sbjct: 154 FEENKMSPNNLGIVFGPTLIRPRPGDADVSLSS 186

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 16/141 (11%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV  +   V  L E  ++G+D  VL+++    DV   ++LLK FFR +PD LL  ELY  
Sbjct: 32  RVGSSKKRVRQLREEFDRGIDV-VLDENHSVHDV---AALLKEFFRDMPDPLLPRELYTA 87

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEV-----------N 266
           FI    +E P  ++  ++ L++ LP  +  TL  +L+ L  V +++             N
Sbjct: 88  FIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGN 146

Query: 267 KMEARNLAIMFGPTLVRAGDD 287
           KM + NLA +FGP L+     
Sbjct: 147 KMTSLNLATIFGPNLLHKQKS 167

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 5/130 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   N  A   L E +N G++   L+ +P    V +++S+LK F R +P SLL+++LY  
Sbjct: 38  RRSANAKACKELKEKLNSGVEV-DLKAEP----VLLLASVLKDFLRNIPGSLLSSDLYEE 92

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           ++ A   E+   ++A +++L+ +LP  +   LK+++  L  +  NSE NKM+A NLA+  
Sbjct: 93  WMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCI 152

Query: 278 GPTLVRAGDD 287
            P+L+     
Sbjct: 153 APSLLWPPAS 162

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 135 GSNIGVPLQHCV----SVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSD 190
           G ++ +  + C+       + C  ++ +V G  + V  L  A N+    ++ E +P    
Sbjct: 17  GIDLPLVFRECIDYVEKHGMKCEGIY-KVSGIKSKVDELKAAYNRRESPNLEEYEP---- 71

Query: 191 VNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLK 250
              ++SLLK + R LP+ LLT EL P F +A      A R   +++L+ ELPE +   L 
Sbjct: 72  -PTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLA 130

Query: 251 YILQHLKRVVDNSEVNKMEARNLAIMFGPTL 281
           +++ H+  V+      KM  +N++I+  PT+
Sbjct: 131 WLIVHMDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 18/148 (12%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVL-EQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
           R+ G+ A V  L +A   G D   L    P     + I+S+LK F + LP+ +L  +LY 
Sbjct: 39  RISGSKARVEKLCQAFENGRDLVDLSGHSP-----HDITSVLKHFLKELPEPVLPFQLYD 93

Query: 217 HFI------QADKIEDPATR------MATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE 264
            FI      Q D  +   +       + ++K+L+  LP  ++ TL++++ HL RV +  E
Sbjct: 94  DFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFE 153

Query: 265 VNKMEARNLAIMFGPTLVRAGDDNMVTM 292
            NKM   NL I+FGPTL+R      V+M
Sbjct: 154 DNKMSPNNLGIVFGPTLLRPLVGGDVSM 181

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G+   V+ +  A  +G D   L  D    D+N ++ +LK +FR L + L   E +  
Sbjct: 41  RVSGSQVEVNDIKNAFERGEDP--LADDQNDHDINSVAGVLKLYFRGLENPLFPKERFED 98

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +   K+E+P  R+  I++++  LP      ++Y+   L  +   S+ N M+  NLAI F
Sbjct: 99  LMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF 158

Query: 278 GPTLVRAGDD 287
           GPTL+   + 
Sbjct: 159 GPTLMPVPEG 168

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214
           LF RV GN   V  L + ++ G +  + ++     DV   +SLL+ F + LP+ L+   L
Sbjct: 41  LF-RVNGNAETVEWLRQRLDSGEEVDLSKEA----DVCSAASLLRLFLQELPEGLIPASL 95

Query: 215 YPHFIQ--AD-KIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEAR 271
               +Q   D   ED   R   ++ L+ +LP  ++  LK++   L  V      N+M A 
Sbjct: 96  QIRLMQLYQDYNGEDEFGR--KLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAE 153

Query: 272 NLAIMFGPTL--VRAGDDNMV 290
           NLA +FGP +  V    ++M 
Sbjct: 154 NLAAVFGPDVFHVYTDVEDMK 174

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 26/148 (17%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G  + V  L +A   G D   L +       + IS++LK + R+LP+ L+   LY  
Sbjct: 39  RVNGAKSRVEKLCQAFENGKDLVELSE----LSPHDISNVLKLYLRQLPEPLILFRLYNE 94

Query: 218 FI------QADKIEDPATRMAT----------------IKKLVHELPEHHFQTLKYILQH 255
           FI      Q       A + +                  K L+ +LP  ++ TL++++ H
Sbjct: 95  FIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVH 154

Query: 256 LKRVVDNSEVNKMEARNLAIMFGPTLVR 283
           L RV + +E NKM A NL I+FGPTL+R
Sbjct: 155 LHRVSEQAEENKMSASNLGIIFGPTLIR 182

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R+PG    V  L +A + G   S        +DV+ ++SLLK + R LP+ ++    Y  
Sbjct: 45  RLPGQANLVKQLQDAFDAGERPSF----DSDTDVHTVASLLKLYLRELPEPVIPWAQYED 100

Query: 218 FIQADKIEDPATRMATIK--KLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI 275
           F+   ++          +  K V  LP+ ++  L YI + L  V  NS VNKM  +NLA 
Sbjct: 101 FLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT 160

Query: 276 MFGPTLVRAGDDNMVTM 292
           +FGP ++R   ++  T+
Sbjct: 161 VFGPNILRPKVEDPATI 177

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI--SSLLKSFFRRLPDSLLTTELY 215
           R  GN   +  LTE ++K        + P  S  N +  ++LLK F R LPD LLT +LY
Sbjct: 50  RKNGNIRRLKELTEEIDKNPT-----EVPDLSKENPVQLAALLKKFLRELPDPLLTFKLY 104

Query: 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRV-----VDNSEVNKMEA 270
             +I + KIED   R   +  +   LP++H  T++ +   LK V     +D    +KM+ 
Sbjct: 105 RLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDI 164

Query: 271 RNLAIMFGPTLVRAGDDN 288
            NLA +  P ++ +  DN
Sbjct: 165 HNLATVITPNILYSKTDN 182

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
           ++ LLK FFR LP+ LL  +L+   ++A ++     R +    L   LP+ H  TL+Y  
Sbjct: 72  VAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFF 131

Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287
             L  V      NKM++ NLA++F P L ++ + 
Sbjct: 132 SFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R  G+T  +  L + ++   ++  L+      +++VI+S+ K + R LP+ L+T ELY  
Sbjct: 38  RKSGSTNKIKELRQGLDTDANSVNLDD----YNIHVIASVFKQWLRDLPNPLMTFELYEE 93

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A  +++    +  +  ++ +L   H  TL+ ++ HL R+    E N+M A  LAI+F
Sbjct: 94  FLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVF 153

Query: 278 GPTLVRAGD 286
            P ++R  D
Sbjct: 154 APCILRCPD 162

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQA---DKIEDPATRMATIKKLVHELPEHHF 246
           D+NVI+ +LK + R LP+ L+T +LY   ++A       D  T       ++  LP    
Sbjct: 72  DINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAK 131

Query: 247 QTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286
            TL  +L HL  V+ NSE NKM  +NLA+ FGP L+    
Sbjct: 132 ATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQ 171

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin homology (PH) domain

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 1   MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
              S +RIDI    V++A  YTKRK+V RL++ S  +E L QA+D   M  WI+ +Q ++
Sbjct: 52  AEDSEQRIDIRSCIVDIAYSYTKRKNVFRLTT-SDGSEYLFQAEDRDDMLGWIKAIQENS 110

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with a RhoGAP domain. These proteins functions as a GTPase-activating protein (GAP) for RHOA and CDC42. ARHGAP21 controls the Arp2/3 complex and F-actin dynamics at the Golgi complex by regulating the activity of the small GTPase Cdc42. It is recruited to the Golgi by to GTPase, ARF1, through its PH domain and its helical motif. It is also required for CTNNA1 recruitment to adherens junctions. ARHGAP21 and it related proteins all contains a PH domain and a RhoGAP domain. Some of the members have additional N-terminal domains including PDZ, SH3, and SPEC. The ARHGAP21 PH domain interacts with the GTPbound forms of both ARF1 and ARF6 ARF-binding domain/ArfBD. The members here include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R  G+   +  L + +    +   LE  P    ++ I+ LLK + R LP+ L+T   Y  
Sbjct: 38  RKSGSANRMKELHQLLQADPENVKLENYP----IHAITGLLKQWLRELPEPLMTFAQYND 93

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A ++ +   ++  I +++ +LP  +  TL+ ++ HL +V    +VN+M    LAI+F
Sbjct: 94  FLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVF 153

Query: 278 GPTLVRAGD--DNMVTM 292
            P L+R  D  D + +M
Sbjct: 154 APCLLRCPDSSDPLTSM 170

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R PGN+A    L + +N G D  +        D    +++LK F   LP+ LLT   YP 
Sbjct: 31  RKPGNSARQQELRDLLNSGTDLDLESGGFHAHDC---ATVLKGFLGELPEPLLTHAHYPA 87

Query: 218 FIQ-AD-----------KIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEV 265
            +Q AD              D    +  ++ L+  LPE +   LK IL  L +   + + 
Sbjct: 88  HLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDK 147

Query: 266 NKMEARNLAIMFGPTLV 282
           NKM A NLA++F P L+
Sbjct: 148 NKMSADNLALLFTPHLI 164

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RVPG+   V+ L   V++              D +V +SLLK + R L + L+   LY  
Sbjct: 45  RVPGDIDEVNELKLRVDQWD-----YPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQ 99

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVV--DNSEVNKMEARNLAI 275
            I A   EDP        ++V +LP  +   L Y++  L+     +N    KM+  NLA+
Sbjct: 100 CISAS--EDP----DKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153

Query: 276 MFGPTLVRAGDDNMVTM 292
           +F P ++R   D+   +
Sbjct: 154 VFAPNILRCTSDDPRVI 170

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
           ++ +LK +FR LP+ LLT +L   FI   +      R+  ++  +  LP+ + + L+ +L
Sbjct: 75  VADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLL 134

Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTL 281
             L  V  NS+ N+M A NLA+   P+L
Sbjct: 135 YFLSDVAANSQENQMTATNLAVCLAPSL 162

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|241307 cd10571, PH_beta_spectrin, Beta-spectrin pleckstrin homology (PH) domain

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 12  HNCV-EVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59
              V EVA DY K+KHV RL   S  +E L QA D   M  W++ LQ  
Sbjct: 58  SGAVCEVASDYKKKKHVFRLRL-SDGSEYLFQAKDEEEMNDWVQKLQAA 105

Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to inositol-1,4,5-trisphosphate. The PH domain of beta-spectrin is thought to play a role in the association of spectrin with the plasma membrane of cells. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 22/151 (14%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNV--ISSLLKSFFRRLPDSLLTTELY 215
           RV G++  +  L    +   D     +   W    V   +S+L+ +   LP+ L+  +LY
Sbjct: 55  RVAGSSKRIRELQLIFSTPPDYG---KSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLY 111

Query: 216 PHF-----------------IQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKR 258
             F                 I      D    +   + L+  LP  + Q L Y+L  L  
Sbjct: 112 EEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAV 171

Query: 259 VVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289
              NS+ N M A NLA +F P ++   D  M
Sbjct: 172 FARNSDKNLMTASNLAAIFQPGILSHPDHEM 202

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 150 LLCPFLF-PRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS 208
           L    L+  +   +   +  + +     +D   LEQ     DV  ++  LK +   LP+ 
Sbjct: 31  LESSTLYRTQSSSSLTELRQILDCDAASVD---LEQ----FDVAALADALKRYLLDLPNP 83

Query: 209 LLTTELYPHFIQADKIEDPATRMATIKKLVHE---LPEHHFQTLKYILQHLKRVVDNSEV 265
           ++   +Y   I   +    +   A + + +     LP  ++ TL+Y+L+H  R+  +S  
Sbjct: 84  VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSK 143

Query: 266 NKMEARNLAIMFGPTLVRA 284
           N + AR LA +F P L R 
Sbjct: 144 NLLSARALAEIFSPLLFRF 162

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|241449 cd13295, PH_EFA6, Exchange Factor for ARF6 Pleckstrin homology (PH) domain

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 5   CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
              I + H+  E A DYTK+ HV RL + +   E L QA DT  M  WI  +   A A S
Sbjct: 63  RNAISVHHSLAEKATDYTKKPHVFRLQT-ADWREFLFQASDTEEMQSWIEAINLVAAAFS 121

Query: 65  A 65
           A
Sbjct: 122 A 122

EFA6 (also called PSD/pleckstrin and Sec7 domain containing) is an guanine nucleotide exchange factor for ADP ribosylation factor 6 (ARF6), which is involved in membrane recycling. EFA6 has four structurally related polypeptides: EFA6A, EFA6B, EFA6C and EFA6D. It consists of a N-terminal proline rich region (PR), a SEC7 domain, a PH domain, a PR, a coiled-coil region, and a C-terminal PR. The EFA6 PH domain regulates its association with the plasma membrane. EFA6 activates Arf6 through its Sec7 catalytic domain and modulates this activity through its C-terminal domain, which rearranges the actin cytoskeleton in fibroblastic cell lines. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 126

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 169 LTEAVNKGLDASVLEQDPRWSDVN--VISSLLKSFFRRLPDSLLTTE-------LYPHFI 219
           L   +NK       ++           ++S+LK +   LPDSL+  +       LY  + 
Sbjct: 56  LRNLLNKPKKPD--KEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAY- 112

Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVD---NSEVNKMEARNLAIM 276
              + +    R+  ++  + +LP+ H  TL  I+ H  R+++     E  +  A  LA  
Sbjct: 113 PPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATS 172

Query: 277 FGPTLVRAGDDNMVTM 292
               ++R   ++++T+
Sbjct: 173 LSREILRPIIESLLTI 188

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 201 FFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVV 260
           F   LPD ++   LY   ++A    +       +  +   LP  H     Y+   L+ ++
Sbjct: 114 FLESLPDPIIPYSLYERLLEAVA--NNEEDKRQV--IRISLPPVHRNVFVYLCSFLRELL 169

Query: 261 DNSEVNKMEARNLAIMFGPTLVR 283
             S    ++   LA +FG  L+R
Sbjct: 170 SESADRGLDENTLATIFGRVLLR 192

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239866 cd04401, RhoGAP_fMSB1, RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLT-TELYPHFIQADKIED-PATRMATIKKLVH 239
           L  + R++D + +  +LK  + RLP S +   E+Y  F   ++  + PA     +     
Sbjct: 61  LLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYEEFKARERRSNYPADAFLDLLPQC- 119

Query: 240 ELPEH-HFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
            L    H   L      L  +  +S VN M  R L+ M GP
Sbjct: 120 -LSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGP 159

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG4407|consensus	1973		100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
KOG1450|consensus	650		100.0
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.97
KOG2200|consensus	674		99.97
KOG4269|consensus	1112		99.97
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.97
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.97
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.96
KOG1451|consensus	812		99.96
KOG4270|consensus	577		99.95
KOG1117|consensus	1186		99.94
KOG2710|consensus	412		99.93
KOG4406|consensus	467		99.92
KOG3564|consensus	604		99.92
KOG1453|consensus	918		99.9
KOG4724|consensus	741		99.77
KOG1452|consensus	442		99.77
KOG4271|consensus	1100		99.76
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.67
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.66
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.65
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.54
KOG4370|consensus	514		99.27
KOG0932|consensus	774		99.23
KOG3565|consensus	640		99.21
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.13
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	98.14
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	98.05
KOG4724|consensus	741		98.04
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	97.97
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	97.95
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	97.88
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	97.87
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	97.87
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	97.85
KOG0517|consensus	2473		97.82
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	97.73
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	97.7
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	97.66
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.66
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.63
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.51
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	97.51
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	97.5
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	97.47
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.35
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	97.33
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	97.33
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	97.31
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	97.25
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	97.19
KOG1453|consensus	918		97.18
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	97.02
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	96.93
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	96.93
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	96.79
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	96.67
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	96.52
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	96.42
PTZ00283	496	serine/threonine protein kinase; Provisional	96.24
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	95.33
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	94.9
PF15409	89	PH_8: Pleckstrin homology domain	94.77
KOG0521|consensus	785		94.3
PTZ00267	478	NIMA-related protein kinase; Provisional	94.22
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	94.2
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	93.92
KOG1449|consensus	670		92.64
KOG3523|consensus	695		92.15
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	91.81
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	91.39
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	90.19
KOG4370|consensus	514		90.05
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	90.02
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	89.37
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	88.64
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	87.79
KOG4271|consensus	1100		85.69
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	84.81
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	83.87
KOG0930|consensus	395		82.71
KOG0690|consensus	516		81.32
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	80.71

>KOG4407|consensus

Probab=100.00  E-value=7.1e-48  Score=380.64  Aligned_cols=290  Identities=38%  Similarity=0.600  Sum_probs=226.2

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhcc----------CCcC-CCCC
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS----------ASES-NISP   72 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~----------~~~~-~~sP   72 (294)
                      .+.++.+.+|..++-+..+||+|||||.+. +-.|+|||++|.++|..|++.+++......          +..+ ..+|
T Consensus       986 ~tts~c~nscltdI~ysetkrn~vfRLTt~-d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~ 1064 (1973)
T KOG4407|consen  986 ATTSECLNSCLTDIQYSETKRNQVFRLTTN-DLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSP 1064 (1973)
T ss_pred             ccCccccccchhhhhhhhhhhhhHHHhHHH-HHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCc
Confidence            357899999999999999999999999998 889999999999999999999987654321          0000 0122


Q ss_pred             CCcccccc------------------cccC---CCCCC-CCCCC--CCCCCCCCCCh-hhhhhHHHHHHHhhcCCCCCCC
Q psy5716          73 ASGQKNRK------------------FASA---STSPR-KSSAT--EATLPPSPKSK-TWKGRVAKQFRRIQAGAGSPNS  127 (294)
Q Consensus        73 ~~~~~~kk------------------~~~~---~~k~r-k~s~~--~~~~~~spk~~-~~~~~~~~~~~~~~~~~~~~~~  127 (294)
                      ...++-.-                  ++..   ..+++ ...+.  ..++...||++ +||+.+......-.++.++...
T Consensus      1065 ~~~~kae~~pst~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g 1144 (1973)
T KOG4407|consen 1065 TANKKAETDPSTVPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSG 1144 (1973)
T ss_pred             cccchhhcCCCCCcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCccc
Confidence            21111100                  0000   11122 22222  34456789987 8987553322222221111111


Q ss_pred             --C-CCCCCCCCccccccccccccc--cccCC-----------------ceeecCCCHHHHHHHHHHHhcC-CCcCccCC
Q psy5716         128 --P-HPPYPPGSNIGVPLQHCVSVN--LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKG-LDASVLEQ  184 (294)
Q Consensus       128 --~-~~~~~~~~~fgv~L~~~~~~~--~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~-~~~~~~~~  184 (294)
                        + .....+-.+|||+|..|...-  .+||+                 ||||||||.+.|..|++.+|++ +-.+++..
T Consensus      1145 ~~~~~~a~~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~ 1224 (1973)
T KOG4407|consen 1145 SQQQGAAGAPQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESL 1224 (1973)
T ss_pred             ccccccccCcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhcc
Confidence              0 112345579999999997654  56776                 9999999999999999999885 44457778


Q ss_pred             CCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q psy5716         185 DPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE  264 (294)
Q Consensus       185 ~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~  264 (294)
                      |.+|.||++|.+|||.|||.|||||+|.++|..||++.+..+.-+|+..|++||+.||.+||+||++|+.||.+|+.|++
T Consensus      1225 DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsd 1304 (1973)
T KOG4407|consen 1225 DDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSD 1304 (1973)
T ss_pred             ccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccchhHhhcccccccCCCCcccccC
Q psy5716         265 VNKMEARNLAIMFGPTLVRAGDDNMVTMVS  294 (294)
Q Consensus       265 ~NkM~~~nLAivf~P~L~~~~~~~~~~m~t  294 (294)
                      +|||.++||||+|||+|+|+++|||.+|||
T Consensus      1305 vNkMEprNLAi~FGPsiVRts~Dnm~tmVt 1334 (1973)
T KOG4407|consen 1305 VNKMEPRNLAIMFGPSIVRTSDDNMATMVT 1334 (1973)
T ss_pred             cccccccceeEEeccceeccCCccHHHHhh
Confidence            999999999999999999999999999997

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=2.7e-38  Score=268.62  Aligned_cols=145  Identities=25%  Similarity=0.445  Sum_probs=127.4

Q ss_pred             cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL  214 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~  214 (294)
                      .+..|+.|+.+++..+.   ||||++|+..++++|++.+|.|... ++..   .+|+|+||++||.|||+||+||||++.
T Consensus        15 vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~-~~~~---~~d~h~va~lLK~flReLPepLi~~~~   90 (186)
T cd04407          15 VPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPEN-VKLE---NYPIHAITGLLKQWLRELPEPLMTFAQ   90 (186)
T ss_pred             CCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcc-cCcc---cCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            33344555555533332   9999999999999999999987543 3333   379999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      |++|+.+.+..+..+++..++.++.+||+.|+.+|+||+.||++|+++++.|+|+++|||+||||+|+|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~  162 (186)
T cd04407          91 YNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD  162 (186)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCC
Confidence            999999998888889999999999999999999999999999999999999999999999999999999754

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=1.9e-38  Score=271.61  Aligned_cols=153  Identities=33%  Similarity=0.571  Sum_probs=133.1

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      ..+..++.|+.+++..+.   ||||++|+..+|+++++.+|++... .+.....+.|+|+||++||.|||+||+||||.+
T Consensus        15 ~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~-~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~   93 (194)
T cd04372          15 QRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEK-ADISATVYPDINVITGALKLYFRDLPIPVITYD   93 (194)
T ss_pred             CCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCc-cCCcccccccHHHHHHHHHHHHHhCCCccCCHH
Confidence            344446677776654444   9999999999999999999985432 233333346999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716         214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV  290 (294)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~  290 (294)
                      .|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+|+++++++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~  170 (194)
T cd04372          94 TYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSAL  170 (194)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCccHH
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999876643

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=1.8e-38  Score=270.22  Aligned_cols=150  Identities=35%  Similarity=0.593  Sum_probs=132.0

Q ss_pred             cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL  214 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~  214 (294)
                      .+..+..|+.+++..+.   ||||++|+...+++|+..+|.+...  +..+..+.|+|++|++||.|||+||+||||++.
T Consensus        16 iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~--~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~   93 (187)
T cd04403          16 VPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKL--DLDDSKWEDIHVITGALKLFFRELPEPLFPYSL   93 (187)
T ss_pred             CChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCC--CccccccccHHHHHHHHHHHHhcCCCCcCCHHH
Confidence            34445555555533333   9999999999999999999997654  333345589999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      |+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||+||||+|+|++.++.
T Consensus        94 ~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~  168 (187)
T cd04403          94 FNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG  168 (187)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987665

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=2.2e-38  Score=271.74  Aligned_cols=155  Identities=59%  Similarity=1.002  Sum_probs=140.6

Q ss_pred             ccccccccccccc--cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHH
Q psy5716         137 NIGVPLQHCVSVN--LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSL  197 (294)
Q Consensus       137 ~fgv~L~~~~~~~--~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~l  197 (294)
                      .||+||++|....  ..+|.                 ||||++|+..++++|++.+|+|... ++..++.+.|+|++|++
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~l   79 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSL   79 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHH
Confidence            4788888776654  44565                 9999999999999999999998754 55556667899999999


Q ss_pred             HHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhh
Q psy5716         198 LKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF  277 (294)
Q Consensus       198 LK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf  277 (294)
                      ||+|||+||+||||.+.|++|+.+.+.++.++++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|+++|||+||
T Consensus        80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f  159 (196)
T cd04395          80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF  159 (196)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence            99999999999999999999999999889899999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCcccc
Q psy5716         278 GPTLVRAGDDNMVTM  292 (294)
Q Consensus       278 ~P~L~~~~~~~~~~m  292 (294)
                      ||+|+|++++++..+
T Consensus       160 aP~l~r~~~~~~~~~  174 (196)
T cd04395         160 GPTLVRTSDDNMETM  174 (196)
T ss_pred             ccccCCCCCCCHHHH
Confidence            999999988877654

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=3.7e-38  Score=267.80  Aligned_cols=145  Identities=26%  Similarity=0.466  Sum_probs=127.1

Q ss_pred             cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL  214 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~  214 (294)
                      .+..+..|+.+++..+.   ||||++|+..++++|++.+|++... ++++   .+|+|+||++||.|||+||+||||+++
T Consensus        15 iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~-~~~~---~~d~h~va~lLK~fLReLPePLi~~~~   90 (186)
T cd04406          15 VPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANS-VNLD---DYNIHVIASVFKQWLRDLPNPLMTFEL   90 (186)
T ss_pred             CCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCC-CCcc---cCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            33334455554433332   9999999999999999999987543 3333   379999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      |++|+++.+..+..+++..++.++.+||+.|+.+|+||+.||.+|+.|++.|+|+++|||+||||+|+|+++
T Consensus        91 y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~  162 (186)
T cd04406          91 YEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPD  162 (186)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCC
Confidence            999999998888889999999999999999999999999999999999999999999999999999999865

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=3.7e-38  Score=269.68  Aligned_cols=132  Identities=30%  Similarity=0.551  Sum_probs=122.1

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI  234 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l  234 (294)
                      ||||++|+..++++|++.+|+|...++.. +....|+|++|++||.|||+||+||||+++|+.|+++.+..+.+++++.+
T Consensus        37 GIFR~sG~~~~i~~l~~~~d~~~~~~~~~-~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l  115 (195)
T cd04384          37 GIYRLSGIASNIQRLRHEFDSEQIPDLTK-DVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKI  115 (195)
T ss_pred             CeeeCCCCHHHHHHHHHHHcCCCCCCccc-ccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999987653321 22347999999999999999999999999999999999988899999999


Q ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      +.++.+||+.||.+|+||+.||++|+++++.|||+++|||+||||+|+++++.
T Consensus       116 ~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~  168 (195)
T cd04384         116 HDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQI  168 (195)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCcc
Confidence            99999999999999999999999999999999999999999999999999753

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=3e-38  Score=268.86  Aligned_cols=148  Identities=28%  Similarity=0.528  Sum_probs=129.5

Q ss_pred             cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL  214 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~  214 (294)
                      .+..++.|+.+.+..+.   ||||++|+..+++++++.||+|.+. + ..+....|+|+||++||.|||+||+||||.+.
T Consensus        18 IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~-~-~~~~~~~d~~~va~lLK~fLReLPepLip~~~   95 (188)
T cd04383          18 IPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDP-L-ADDQNDHDINSVAGVLKLYFRGLENPLFPKER   95 (188)
T ss_pred             CChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCc-c-ccccccccHHHHHHHHHHHHHhCCCccCCHHH
Confidence            34444555555533333   9999999999999999999998764 1 12234589999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      |+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||+||||+|+|.+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~  168 (188)
T cd04383          96 FEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEG  168 (188)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998654

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=4.8e-38  Score=267.05  Aligned_cols=151  Identities=32%  Similarity=0.537  Sum_probs=131.3

Q ss_pred             ccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716         139 GVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY  215 (294)
Q Consensus       139 gv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~  215 (294)
                      +..|+.|+.+.+..+.   ||||++|+..+++++++.+|++...++...   .+|+|+||++||+|||+||+||+|+++|
T Consensus        16 P~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~va~~lK~fLreLPePlip~~~~   92 (185)
T cd04373          16 PIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSK---DFTVNAVAGALKSFFSELPDPLIPYSMH   92 (185)
T ss_pred             CcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHHHHHHhcCCchhccHHHH
Confidence            3334455554432222   999999999999999999999766434322   2799999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcccc
Q psy5716         216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM  292 (294)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m  292 (294)
                      +.|+++.+..+.++++..++.++++||+.||.+|+||+.||++|+++++.|+|+++|||+||||+|+|+..+++..+
T Consensus        93 ~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~~~~~~  169 (185)
T cd04373          93 LELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTSMEAL  169 (185)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCCCHHHH
Confidence            99999999889999999999999999999999999999999999999999999999999999999999988777543

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=1.1e-37  Score=266.68  Aligned_cols=152  Identities=34%  Similarity=0.549  Sum_probs=131.9

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      ...+..+..|+.+++..+.   ||||++|+..+++++++.+|++... .. .+....|+|+||++||.|||+||+||||+
T Consensus        14 ~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~-~~-~~~~~~d~h~va~lLK~fLReLPePLip~   91 (196)
T cd04387          14 SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKD-VS-VMLSEMDVNAIAGTLKLYFRELPEPLFTD   91 (196)
T ss_pred             CCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcc-cc-cccccCCHHHHHHHHHHHHHhCCCccCCH
Confidence            3444555666666644343   9999999999999999999987543 11 12234899999999999999999999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      ++|+.|+++.+..+..+++..++.++.+||++|+.+|.||+.||++|+++++.|||++.|||+||||+|+|++..++
T Consensus        92 ~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~  168 (196)
T cd04387          92 ELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKES  168 (196)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCcccc
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999976544

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=1e-37  Score=268.27  Aligned_cols=134  Identities=32%  Similarity=0.549  Sum_probs=121.8

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcC--CCHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKI--EDPATRMA  232 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~--~~~~~~~~  232 (294)
                      ||||++|+...++++++.+|+|....++    ...|+|+||++||.|||+||+||+|.+.|+.|+.+.+.  .+.+.++.
T Consensus        42 GIFR~~G~~~~i~~l~~~~d~~~~~~~~----~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~  117 (199)
T cd04390          42 GLFRLPGQANLVKQLQDAFDAGERPSFD----SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLG  117 (199)
T ss_pred             CeeeCCCCHHHHHHHHHHHhCCCCCCcc----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHH
Confidence            9999999999999999999998765332    23899999999999999999999999999999988764  45667888


Q ss_pred             HHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcccc
Q psy5716         233 TIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM  292 (294)
Q Consensus       233 ~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m  292 (294)
                      .++.++..||+.|+.+|.||+.||++|++|++.|||++.|||+||||+|+|+..+++.++
T Consensus       118 ~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~~~~~  177 (199)
T cd04390         118 ELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPATI  177 (199)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999988776544

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=2.3e-37  Score=269.30  Aligned_cols=151  Identities=26%  Similarity=0.373  Sum_probs=132.5

Q ss_pred             CCccccccccccc-cccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716         135 GSNIGVPLQHCVS-VNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS  196 (294)
Q Consensus       135 ~~~fgv~L~~~~~-~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~  196 (294)
                      +.+||+||+..+. ....+|.                 ||||++|+..++++|++.+|.+.+. .+.+   ..++|+||+
T Consensus         2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~-~~~~---~~~~~~va~   77 (220)
T cd04375           2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDN-VNYD---GQQAYDVAD   77 (220)
T ss_pred             CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCc-cCcc---cccHHHHHH
Confidence            4678888874333 3345565                 9999999999999999999987554 3332   378999999


Q ss_pred             HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716         197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM  276 (294)
Q Consensus       197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv  276 (294)
                      +||+|||+||+||||+++|+.|+++.+..+.++++++++.++..||++||.+|+||+.||++|+.|++.|||++.|||+|
T Consensus        78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv  157 (220)
T cd04375          78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC  157 (220)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence            99999999999999999999999998877888999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCc
Q psy5716         277 FGPTLVRAGDDNM  289 (294)
Q Consensus       277 f~P~L~~~~~~~~  289 (294)
                      |||+||+....+.
T Consensus       158 faP~L~~~~~~~~  170 (220)
T cd04375         158 LAPSLFHLNTSRR  170 (220)
T ss_pred             HhhhhcCCCCCCc
Confidence            9999999976543

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=2.4e-37  Score=265.82  Aligned_cols=149  Identities=31%  Similarity=0.449  Sum_probs=128.0

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      ...+..+..|+.+++..+.   ||||++|+..++++|++.||+|.+. +++.   ..|+|+||++||+|||+||+||||+
T Consensus        14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~-~~~~---~~~~h~va~lLK~fLReLPePLi~~   89 (200)
T cd04408          14 EEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDL-VDLS---GHSPHDITSVLKHFLKELPEPVLPF   89 (200)
T ss_pred             CCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCc-cCcc---cCCHHHHHHHHHHHHHhCCCccCCH
Confidence            3344555667766654444   9999999999999999999998754 3333   3799999999999999999999999


Q ss_pred             chHHHHHHhhcCC------------CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhccc
Q psy5716         213 ELYPHFIQADKIE------------DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT  280 (294)
Q Consensus       213 ~~~~~~~~~~~~~------------~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~  280 (294)
                      ++|+.|+++.+..            ..++++..++.++..||+.||.||+||+.||++|+++++.|+|++.|||+||||+
T Consensus        90 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~  169 (200)
T cd04408          90 QLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPT  169 (200)
T ss_pred             HHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccc
Confidence            9999999876421            2457899999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCC
Q psy5716         281 LVRAGDDN  288 (294)
Q Consensus       281 L~~~~~~~  288 (294)
                      ||+++.+.
T Consensus       170 Ll~~~~~~  177 (200)
T cd04408         170 LLRPLVGG  177 (200)
T ss_pred             cCCCCCCC
Confidence            99997654

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=1.2e-36  Score=262.21  Aligned_cols=151  Identities=32%  Similarity=0.472  Sum_probs=128.1

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      ..+..++.|+.+++..+.   ||||++|+..++++|++.||++... .+.......|+|+||++||+|||+||+||||++
T Consensus        17 ~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~-~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~   95 (207)
T cd04379          17 DVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAA-VELSEELYPDINVITGVLKDYLRELPEPLITPQ   95 (207)
T ss_pred             CcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCc-CCCChhhcccHHHHHHHHHHHHHhCCCccCCHH
Confidence            344446788887755444   9999999999999999999987543 233222335999999999999999999999999


Q ss_pred             hHHHHHHhhcCC---CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         214 LYPHFIQADKIE---DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       214 ~~~~~~~~~~~~---~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      +|+.|+++.+..   +.+.+...++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+||+++++.
T Consensus        96 ~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~  173 (207)
T cd04379          96 LYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEF  173 (207)
T ss_pred             HHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCccc
Confidence            999999987653   334456778899999999999999999999999999999999999999999999999997655

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=8.8e-37  Score=263.06  Aligned_cols=149  Identities=34%  Similarity=0.495  Sum_probs=128.3

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      ..+..+..|+.+++..+.   ||||++|+..++++|++.|++|.+. ++..   .+|+|++|++||+|||+||+||+|++
T Consensus        15 ~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~-~~~~---~~~~h~va~~LK~fLReLpePlip~~   90 (203)
T cd04378          15 EVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDL-VELS---ELSPHDISSVLKLFLRQLPEPLILFR   90 (203)
T ss_pred             CCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCc-cccc---cCCHHHHHHHHHHHHHhCCCccCCHH
Confidence            345556677777755444   9999999999999999999998654 3333   37999999999999999999999999


Q ss_pred             hHHHHHHhhcCC--------------CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcc
Q psy5716         214 LYPHFIQADKIE--------------DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP  279 (294)
Q Consensus       214 ~~~~~~~~~~~~--------------~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P  279 (294)
                      +|+.|+.+.+..              +...++..++.++..||..|+.+|+||+.||++|+++++.|+|++.|||+||||
T Consensus        91 ~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P  170 (203)
T cd04378          91 LYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGP  170 (203)
T ss_pred             HHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhcc
Confidence            999999876421              234678899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCc
Q psy5716         280 TLVRAGDDNM  289 (294)
Q Consensus       280 ~L~~~~~~~~  289 (294)
                      +|||++.++.
T Consensus       171 ~Ll~~~~~~~  180 (203)
T cd04378         171 TLIRPRPGDA  180 (203)
T ss_pred             ccCCCCCCCc
Confidence            9999987643

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=2.1e-36  Score=260.82  Aligned_cols=152  Identities=30%  Similarity=0.516  Sum_probs=132.2

Q ss_pred             CCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716         135 GSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS  196 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~  196 (294)
                      .++||+||+.+.+.. ..+|.                 ||||++|+...++++++.+|+|... .+. .....|+|++|+
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~-~~~-~~~~~d~h~va~   79 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFS-LPL-DEFYSDPHAVAS   79 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC-cch-hhccCCHHHHHH
Confidence            456777776554432 34554                 9999999999999999999998643 111 122379999999


Q ss_pred             HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716         197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM  276 (294)
Q Consensus       197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv  276 (294)
                      +||+|||+||+||+|.++|+.|+.+.+..+.++++..++.++.+||+.|+.+|+||+.||++|++|++.|+|+++|||+|
T Consensus        80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~  159 (203)
T cd04386          80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV  159 (203)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCC
Q psy5716         277 FGPTLVRAGDDN  288 (294)
Q Consensus       277 f~P~L~~~~~~~  288 (294)
                      |||+|+|++.++
T Consensus       160 faP~ll~~~~~~  171 (203)
T cd04386         160 LAPNLLWAKNEG  171 (203)
T ss_pred             hccccCCCCCCC
Confidence            999999997764

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=2.1e-36  Score=260.34  Aligned_cols=127  Identities=28%  Similarity=0.458  Sum_probs=119.0

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI  234 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l  234 (294)
                      ||||++|+..++++|++.+|+|.+. .     ...++|+||++||.|||+||+||+|+++|+.|+.+.+..+.++++.++
T Consensus        39 GIFR~sG~~~~i~~l~~~~d~~~~~-~-----~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~  112 (202)
T cd04394          39 GLFRKSGSVVRQKELKAKLEGGEAC-L-----SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSAT  112 (202)
T ss_pred             CeeeCCCCHHHHHHHHHHHcCCCCC-c-----cccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999998654 1     126899999999999999999999999999999999888888899999


Q ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      +.++.+||..|+.+|+||+.||++|++|++.|||++.|||+||||+||++.++
T Consensus       113 ~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~~  165 (202)
T cd04394         113 LLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG  165 (202)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCCc
Confidence            99999999999999999999999999999999999999999999999999754

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=2.5e-36  Score=262.65  Aligned_cols=131  Identities=31%  Similarity=0.466  Sum_probs=120.4

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCc-CccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDA-SVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMAT  233 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~  233 (294)
                      ||||++|+..++++|++.+|++... .++.   ...|+|++|++||+|||+||+||+|.++|+.|+++.+..+.++++.+
T Consensus        42 GIFR~~G~~~~i~~l~~~ld~~~~~~~~~~---~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~  118 (216)
T cd04391          42 GILRIPGSAQRVKFLCQELEAKFYEGTFLW---DQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQA  118 (216)
T ss_pred             ceeecCCcHHHHHHHHHHHhcccccCcccc---ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999999999999999986432 2332   23799999999999999999999999999999999888888899999


Q ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         234 IKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       234 l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      ++.++..||+.|+.+|+||+.||++|++|++.|||++.|||+||||+||++...+
T Consensus       119 l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~  173 (216)
T cd04391         119 LNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKH  173 (216)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999996544

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=2.2e-36  Score=256.26  Aligned_cols=146  Identities=27%  Similarity=0.451  Sum_probs=132.3

Q ss_pred             CCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716         135 GSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLT  211 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~  211 (294)
                      |...+..++.|+.+++..+.   ||||++|+...+++|++.+|+|...+  +.+   +|+|+||++||.|||+||+||||
T Consensus        17 g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~--~~~---~d~h~va~lLK~fLReLP~pLi~   91 (182)
T cd04381          17 GIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPN--LEE---YEPPTVASLLKQYLRELPEPLLT   91 (182)
T ss_pred             CCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCC--ccc---cChHHHHHHHHHHHHhCCCccCC
Confidence            45666777888887755444   99999999999999999999987643  322   79999999999999999999999


Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccC
Q psy5716         212 TELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG  285 (294)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~  285 (294)
                      .++|+.|+++.+..+..+++..++.++.+||+.|+.+|+||+.||.+|+++++.|+|+++|||+||||+|+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~  165 (182)
T cd04381          92 KELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQISN  165 (182)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCcH
Confidence            99999999999888999999999999999999999999999999999999999999999999999999998764

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=2.1e-36  Score=264.31  Aligned_cols=155  Identities=25%  Similarity=0.303  Sum_probs=133.0

Q ss_pred             CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      ..+..+..++.|+.+++..+.   ||||++|+..++++|++.||++.+..... +...+|+|++|++||+|||+||+|||
T Consensus        28 ~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~-~~~~~~vh~va~lLK~fLReLPePLi  106 (225)
T cd04396          28 VYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF-DWDGYTVHDAASVLRRYLNNLPEPLV  106 (225)
T ss_pred             cCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC-CccCCCHHHHHHHHHHHHHhCCCccC
Confidence            345667778899888855444   99999999999999999999875431111 12347999999999999999999999


Q ss_pred             CcchHHHHHHhhcC-----------------CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccch
Q psy5716         211 TTELYPHFIQADKI-----------------EDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNL  273 (294)
Q Consensus       211 ~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL  273 (294)
                      |.++|++|+++...                 .+.++++..++.++.+||+.||.+|+||+.||++|++|++.|||+++||
T Consensus       107 p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL  186 (225)
T cd04396         107 PLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNL  186 (225)
T ss_pred             CHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence            99999999886542                 4567889999999999999999999999999999999999999999999


Q ss_pred             hHhhcccccccCCCCc
Q psy5716         274 AIMFGPTLVRAGDDNM  289 (294)
Q Consensus       274 Aivf~P~L~~~~~~~~  289 (294)
                      |+||||+||++++++|
T Consensus       187 AivfaP~Ll~~~~~~~  202 (225)
T cd04396         187 AAIFQPGILSHPDHEM  202 (225)
T ss_pred             heeeccccCCCCcccc
Confidence            9999999999987655

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=2.8e-36  Score=260.36  Aligned_cols=145  Identities=28%  Similarity=0.386  Sum_probs=126.8

Q ss_pred             cccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHH
Q psy5716         142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHF  218 (294)
Q Consensus       142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~  218 (294)
                      +..|+.+.+. +.   ||||++|+..++++|++.+|+|.+.++...   .+|+|+||++||+|||+||+||||.++|+.|
T Consensus        13 v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~---~~~~h~va~lLK~flReLPePLi~~~~y~~~   88 (208)
T cd04392          13 IYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESG---GFHAHDCATVLKGFLGELPEPLLTHAHYPAH   88 (208)
T ss_pred             HHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccc---cCCHHHHHHHHHHHHHhCCCccCCHHHHHHH
Confidence            4467777754 44   999999999999999999999877544332   2799999999999999999999999999999


Q ss_pred             HHhhc------------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         219 IQADK------------IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       219 ~~~~~------------~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      +.+.+            ..+.+.++..++.++.+||++||.+|+||+.||++|+++++.|||++.|||+||||+|+++.+
T Consensus        89 ~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~  168 (208)
T cd04392          89 LQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRN  168 (208)
T ss_pred             HHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCC
Confidence            87653            245567789999999999999999999999999999999999999999999999999999877


Q ss_pred             CCcc
Q psy5716         287 DNMV  290 (294)
Q Consensus       287 ~~~~  290 (294)
                      .+..
T Consensus       169 ~~~~  172 (208)
T cd04392         169 LTPE  172 (208)
T ss_pred             CCHH
Confidence            6654

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=3.6e-36  Score=255.96  Aligned_cols=147  Identities=29%  Similarity=0.499  Sum_probs=129.2

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      ..+..|..|++++...+.   ||||++|+..+++++++.+|++.+. ++..   .+|+|+||++||+|||+||+||||++
T Consensus        14 ~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~-~~~~---~~~~~~va~~LK~flr~LpepLi~~~   89 (186)
T cd04377          14 SVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS-VNLE---DYPIHVITSVLKQWLRELPEPLMTFE   89 (186)
T ss_pred             CCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcc-cCcc---cCCHHHHHHHHHHHHHcCCCccCCHH
Confidence            344445566655533222   9999999999999999999998443 3333   37999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      .|++|+.+.+..+..+++..++.++.+||+.|+.+|.||+.||++|+++++.|+|++.|||+||||+|+|++++
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~  163 (186)
T cd04377          90 LYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDT  163 (186)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCC
Confidence            99999999998888999999999999999999999999999999999999999999999999999999999764

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=2.5e-36  Score=261.44  Aligned_cols=148  Identities=33%  Similarity=0.505  Sum_probs=125.4

Q ss_pred             cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL  214 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~  214 (294)
                      .+..++.|+.+++..+.   ||||++|+..++++|++.||+|.+. ++..   .+|+|++|++||+|||+||+||||.++
T Consensus        16 iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~-~~~~---~~~~h~va~~LK~fLReLPePLi~~~~   91 (211)
T cd04409          16 IPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDL-VELS---ELSPHDISNVLKLYLRQLPEPLILFRL   91 (211)
T ss_pred             CCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCc-cccc---cCCHHHHHHHHHHHHHhCCCcccCHHH
Confidence            34445677777755444   9999999999999999999998754 3332   379999999999999999999999999


Q ss_pred             HHHHHHhhcCC---C-------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         215 YPHFIQADKIE---D-------------------PATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       215 ~~~~~~~~~~~---~-------------------~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      |++|+++.+..   +                   ...++..++.++.+||.+||.+|+||+.||++|++|++.|+|++.|
T Consensus        92 ~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  171 (211)
T cd04409          92 YNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASN  171 (211)
T ss_pred             HHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHH
Confidence            99999876421   0                   0124678999999999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCCCCc
Q psy5716         273 LAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       273 LAivf~P~L~~~~~~~~  289 (294)
                      ||+||||+|||+..++.
T Consensus       172 LAivf~P~Llrp~~~~~  188 (211)
T cd04409         172 LGIIFGPTLIRPRPTDA  188 (211)
T ss_pred             hhhhccccccCCCCCCc
Confidence            99999999999976553

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=2.8e-36  Score=257.02  Aligned_cols=149  Identities=22%  Similarity=0.354  Sum_probs=131.5

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      ...+..+..|+.+++..++   ||||++|+.. +.+|++.+|++... ++++   .+|+|+||++||+|||+||+||||+
T Consensus        13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~-~d~~---~~dv~~va~~LK~ylReLPePLip~   87 (200)
T cd04388          13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAAS-VDLE---QFDVAALADALKRYLLDLPNPVIPA   87 (200)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCC-CCcc---cccHHHHHHHHHHHHHhCCCccCCH
Confidence            4556678899999988887   9999999875 78899999985332 4433   4899999999999999999999999


Q ss_pred             chHHHHHHhh-cCCCHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         213 ELYPHFIQAD-KIEDPATRMATIKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       213 ~~~~~~~~~~-~~~~~~~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      ++|++|++++ ...+.++++..++.++.  .||+.||.||+||+.||.+|++|++.|+|+++|||+||||+|||++.+..
T Consensus        88 ~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~  167 (200)
T cd04388          88 PVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASS  167 (200)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccc
Confidence            9999999986 45677889999999998  89999999999999999999999999999999999999999999976543

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=3.4e-36  Score=261.15  Aligned_cols=150  Identities=29%  Similarity=0.374  Sum_probs=132.4

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      ...+..++.|+.+.+..+.   ||||++|+..++++|++.+|++.....+..   .+|+|++|++||+|||+||+||+|.
T Consensus        25 ~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~---~~~~~~va~lLK~flReLPepLi~~  101 (213)
T cd04397          25 LRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLS---KENPVQLAALLKKFLRELPDPLLTF  101 (213)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccc---cCcHHHHHHHHHHHHHhCCCccCCH
Confidence            3456667788887755444   999999999999999999999765423332   3799999999999999999999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----ccCCCccchhHhhcccccccCCC
Q psy5716         213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE-----VNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~-----~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      ++|+.|+++.+..+.+++...++.++..||+.||.+|+||+.||++|+.+++     .|||++.|||+||||+|+++..+
T Consensus       102 ~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~  181 (213)
T cd04397         102 KLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTD  181 (213)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCC
Confidence            9999999999999999999999999999999999999999999999998765     59999999999999999999776


Q ss_pred             C
Q psy5716         288 N  288 (294)
Q Consensus       288 ~  288 (294)
                      +
T Consensus       182 ~  182 (213)
T cd04397         182 N  182 (213)
T ss_pred             C
Confidence            5

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=5.6e-36  Score=256.00  Aligned_cols=129  Identities=31%  Similarity=0.522  Sum_probs=121.8

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI  234 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l  234 (294)
                      ||||++|+...++++++.+|+|...++     ..+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..+.++++..+
T Consensus        35 GiFR~~g~~~~i~~l~~~~~~~~~~~~-----~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l  109 (192)
T cd04402          35 GIFRRSANAKACKELKEKLNSGVEVDL-----KAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAEL  109 (192)
T ss_pred             CeeeCCCcHHHHHHHHHHHhCCCCCCC-----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999999999999999999865433     238999999999999999999999999999999999888999999999


Q ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      +.++.+||..|+.+|.||+.||++|+.+++.|+|+++|||+||||+|||++.++
T Consensus       110 ~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~  163 (192)
T cd04402         110 QRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASS  163 (192)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCcc
Confidence            999999999999999999999999999999999999999999999999998754

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=4.8e-36  Score=256.01  Aligned_cols=151  Identities=32%  Similarity=0.446  Sum_probs=135.1

Q ss_pred             CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      .+...+..|..|+.+++..+.   ||||++|+..+++++++.|++|... .+..   ..|+|++|++||+|||+||+|||
T Consensus        13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~---~~d~h~vaslLK~fLReLPePLi   88 (193)
T cd04382          13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLS---KVDIHVICGCLKDFLRSLKEPLI   88 (193)
T ss_pred             CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccc---cCCHHHHHHHHHHHHHhCCCcCC
Confidence            345666678899998865554   9999999999999999999987654 2222   26999999999999999999999


Q ss_pred             CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      |.++|+.|+++.+..+.++++..++.++..||+.||.+|+||+.||++|++ ++.|||++.|||+||||+||+.+..+.
T Consensus        89 ~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~  166 (193)
T cd04382          89 TFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP  166 (193)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999 999999999999999999999876543

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=4.7e-36  Score=257.72  Aligned_cols=148  Identities=32%  Similarity=0.517  Sum_probs=130.5

Q ss_pred             cccccccccccCC---ceeecCCCHHHHHHHHHH-HhcCC--CcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716         142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEA-VNKGL--DASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY  215 (294)
Q Consensus       142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~-~~~~~--~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~  215 (294)
                      +..|+.+++..+.   ||||++|+..+|+++++. +|.+.  ..++++.. ..+|+|+||++||+|||+||+||||+++|
T Consensus        32 v~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y  110 (203)
T cd04374          32 VRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN-SEWEIKTITSALKTYLRNLPEPLMTYELH  110 (203)
T ss_pred             HHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc-ccccHHHHHHHHHHHHHcCCCCcCCHHHH
Confidence            5789998865555   999999999999999875 56542  11233322 14799999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716         216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV  290 (294)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~  290 (294)
                      +.|+.+.+..+.++++..++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+..+++.
T Consensus       111 ~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~  185 (203)
T cd04374         111 NDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVA  185 (203)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877654

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=1.1e-35  Score=253.85  Aligned_cols=148  Identities=27%  Similarity=0.470  Sum_probs=126.8

Q ss_pred             cccccccccccccccC----CceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         138 IGVPLQHCVSVNLLCP----FLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p----~GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      .+..+..|+.+.+..+    .||||++|+...++++++.+|++.+.++. ......|+|+||++||.|||+||+||||.+
T Consensus        22 iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~-~~~~~~d~h~va~lLK~flreLP~PLi~~~  100 (190)
T cd04400          22 LPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLF-SSSLYPDVHTVAGLLKLYLRELPTLILGGE  100 (190)
T ss_pred             CChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCcc-ccccccCHHHHHHHHHHHHHhCCcccCCHH
Confidence            3333455555552221    29999999999999999999998664332 122348999999999999999999999999


Q ss_pred             hHHHHHHhhcCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         214 LYPHFIQADKIE-DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      +|+.|..+.+.. +.++++..++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|||+||||+|+++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~~  174 (190)
T cd04400         101 LHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPAG  174 (190)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCCCHH
Confidence            999999988766 7889999999999999999999999999999999999999999999999999999998854

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=2.5e-35  Score=254.01  Aligned_cols=150  Identities=29%  Similarity=0.476  Sum_probs=134.1

Q ss_pred             CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      .++..+..++.|+.+++..+.   ||||++|+..++++|++.+|+|.+..++    ...|+|+||++||.|||+||+||+
T Consensus         5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~----~~~~~h~va~lLK~fLReLPePLi   80 (206)
T cd04376           5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD----ENHSVHDVAALLKEFFRDMPDPLL   80 (206)
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc----ccCCHHHHHHHHHHHHHhCCCccC
Confidence            345667778899998865555   9999999999999999999998775432    237999999999999999999999


Q ss_pred             CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----------ccCCCccchhHhhcc
Q psy5716         211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE-----------VNKMEARNLAIMFGP  279 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~-----------~NkM~~~nLAivf~P  279 (294)
                      |+++|+.|+.+.+.. .++++..++.++.+||+.||.+|+||+.||++|++|++           .|||+++|||+||||
T Consensus        81 ~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P  159 (206)
T cd04376          81 PRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGP  159 (206)
T ss_pred             CHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhc
Confidence            999999999998765 67889999999999999999999999999999999986           799999999999999


Q ss_pred             cccccCCCC
Q psy5716         280 TLVRAGDDN  288 (294)
Q Consensus       280 ~L~~~~~~~  288 (294)
                      +|+|++.++
T Consensus       160 ~Ll~~~~~~  168 (206)
T cd04376         160 NLLHKQKSG  168 (206)
T ss_pred             cccCCCCCc
Confidence            999997654

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=2.8e-35  Score=251.87  Aligned_cols=154  Identities=36%  Similarity=0.573  Sum_probs=132.7

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCC--CCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQ--DPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~--~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      ...+..+..|++..+..+.   ||||++|+...++++++.+|++... ++..  +....|+|++|++||+|||+||+||+
T Consensus        14 ~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~-~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi   92 (192)
T cd04398          14 DNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN-VLLISPEDYESDIHSVASLLKLFFRELPEPLL   92 (192)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCcc-ccccccccccccHHHHHHHHHHHHHhCCCccC
Confidence            3444556667666543333   9999999999999999999997643 2211  12236999999999999999999999


Q ss_pred             CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716         211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV  290 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~  290 (294)
                      |.+.|+.|+++.+.++..+++..++.++.+||..|+.+|+||+.||++|+.+++.|+|++.|||+||||+|++++.++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~~~~  172 (192)
T cd04398          93 TKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDNAA  172 (192)
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=4.4e-35  Score=249.94  Aligned_cols=142  Identities=26%  Similarity=0.402  Sum_probs=123.4

Q ss_pred             cccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHH
Q psy5716         142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHF  218 (294)
Q Consensus       142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~  218 (294)
                      |..|+.+++..+.   ||||++|+...++++++.+|+|...++.    .++|+|++|++||+|||+||+||+|.+.|+.|
T Consensus        24 l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~----~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l   99 (189)
T cd04393          24 VRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS----KEADVCSAASLLRLFLQELPEGLIPASLQIRL   99 (189)
T ss_pred             HHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHH
Confidence            4445544432222   9999999999999999999998765332    23899999999999999999999999999999


Q ss_pred             HHhhcCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         219 IQADKIE-DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       219 ~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      +.+.+.. +.++++..++.++.+||+.|+.+|.||+.||++|++|++.|+|++.|||+||||+||+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~  169 (189)
T cd04393         100 MQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTD  169 (189)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCC
Confidence            9986543 67788899999999999999999999999999999999999999999999999999998664

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=5.1e-35  Score=253.21  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=131.9

Q ss_pred             CCccccccccccccccccC-----C----ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhC
Q psy5716         135 GSNIGVPLQHCVSVNLLCP-----F----LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRL  205 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~~~~p-----~----GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreL  205 (294)
                      +...+..++.|+.+++...     .    ||||++|+.+.+++||+.||++.+.+....+...+|+|+||++||.|||||
T Consensus        13 ~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReL   92 (212)
T cd04399          13 KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLEL   92 (212)
T ss_pred             CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHC
Confidence            4456666778888775421     1    999999999999999999999876533221244589999999999999999


Q ss_pred             CCCCCCcchHHHHHHhhc------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccc---CCCccchhHh
Q psy5716         206 PDSLLTTELYPHFIQADK------IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVN---KMEARNLAIM  276 (294)
Q Consensus       206 P~pLi~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~N---kM~~~nLAiv  276 (294)
                      |+||+|+++|+.|+++..      .++.++|+..++.++.+||..|+.+|++|+.||.+|++++..|   ||+++|||+|
T Consensus        93 PepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~v  172 (212)
T cd04399          93 PDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATS  172 (212)
T ss_pred             CCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence            999999999999987642      3567899999999999999999999999999999999987666   5999999999


Q ss_pred             hcccccccCCCCcc
Q psy5716         277 FGPTLVRAGDDNMV  290 (294)
Q Consensus       277 f~P~L~~~~~~~~~  290 (294)
                      |||+|+|+..+...
T Consensus       173 fgp~llr~~~~~~~  186 (212)
T cd04399         173 LSREILRPIIESLL  186 (212)
T ss_pred             hhhhhcCCCccccc
Confidence            99999999776654

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=6.3e-35  Score=248.16  Aligned_cols=127  Identities=28%  Similarity=0.434  Sum_probs=112.3

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI  234 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l  234 (294)
                      ||||++|+...++++++.+|+|... +    ....|+|++|++||+|||+||+||+|.++|++++++.+  +    .+.+
T Consensus        42 GIFR~~G~~~~i~~l~~~~d~~~~~-~----~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~--~----~~~~  110 (187)
T cd04389          42 GIFRVPGDIDEVNELKLRVDQWDYP-L----SGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASE--D----PDKA  110 (187)
T ss_pred             CeeeCCCCHHHHHHHHHHHhcCCCC-c----cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc--C----HHHH
Confidence            9999999999999999999997543 1    23379999999999999999999999999999998653  1    2457


Q ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHhcc--cccCCCccchhHhhcccccccCCCCcccc
Q psy5716         235 KKLVHELPEHHFQTLKYILQHLKRVVDNS--EVNKMEARNLAIMFGPTLVRAGDDNMVTM  292 (294)
Q Consensus       235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~--~~NkM~~~nLAivf~P~L~~~~~~~~~~m  292 (294)
                      ++++.+||+.|+.+|.||+.||++|++++  +.|||+++|||+||||+|+|+..++...+
T Consensus       111 ~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~~~~~  170 (187)
T cd04389         111 VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPRVI  170 (187)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCCHHHH
Confidence            88999999999999999999999999754  78999999999999999999987777654

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=1.5e-34  Score=247.83  Aligned_cols=151  Identities=34%  Similarity=0.568  Sum_probs=131.1

Q ss_pred             CCCccccccccccccc---cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHH
Q psy5716         134 PGSNIGVPLQHCVSVN---LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNV  193 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~---~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~  193 (294)
                      +..+||+||+.+....   ..+|.                 ||||++|+...++++++.+|+|...++  ..  ..|+|+
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~--~~--~~d~~~   77 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDF--DQ--YEDVHL   77 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCc--cc--ccCHHH
Confidence            3567888887554432   34555                 999999999999999999999865433  21  259999


Q ss_pred             HHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccch
Q psy5716         194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNL  273 (294)
Q Consensus       194 va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL  273 (294)
                      +|++||+|||+||+||+|.+.|+.++.+.+.+ ..+++..++.++.+||+.|+.+|.+|+.||++|+++++.|+|+++||
T Consensus        78 va~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nL  156 (195)
T cd04404          78 PAVILKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL  156 (195)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHh
Confidence            99999999999999999999999999987654 67788999999999999999999999999999999999999999999


Q ss_pred             hHhhcccccccCCCCc
Q psy5716         274 AIMFGPTLVRAGDDNM  289 (294)
Q Consensus       274 Aivf~P~L~~~~~~~~  289 (294)
                      |+||||+|+|+++..+
T Consensus       157 a~vfaP~l~~~~~~~~  172 (195)
T cd04404         157 AVVFGPNLLWAKDASM  172 (195)
T ss_pred             heeeeccccCCCCccc
Confidence            9999999999977644

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=1.5e-34  Score=245.58  Aligned_cols=151  Identities=34%  Similarity=0.514  Sum_probs=134.2

Q ss_pred             CCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716         135 GSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLT  211 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~  211 (294)
                      +...+..+..|+.+++..+.   ||||++|+...+++|++.++++... ... ++..+|+|+||++||.|||+||+||||
T Consensus        12 ~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~-~~~-~~~~~d~~~va~llK~yLreLP~pLi~   89 (184)
T cd04385          12 DNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARS-VQL-REGEYTVHDVADVLKRFLRDLPDPLLT   89 (184)
T ss_pred             CCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCc-CCC-CcccCCHHHHHHHHHHHHHhCCCccCC
Confidence            34555667899988865554   9999999999999999999886432 221 133489999999999999999999999


Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         212 TELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      .+.|++|+.+.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+++|||+||||+|||+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~  165 (184)
T cd04385          90 SELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH  165 (184)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence            9999999999998999999999999999999999999999999999999999999999999999999999999865

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG1450|consensus

Probab=100.00  E-value=3.5e-34  Score=274.51  Aligned_cols=276  Identities=28%  Similarity=0.436  Sum_probs=202.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcC----C-C-CCCCccccc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASES----N-I-SPASGQKNR   79 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~----~-~-sP~~~~~~k   79 (294)
                      .+.+++++...-......+++++.+++. .+.+|+.+..++.....|.....++++......+    + . ++.+.....
T Consensus       310 ~sps~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~net~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~  388 (650)
T KOG1450|consen  310 QSPSLSPAMVSASKNKSTRKNTLWLTTN-RTSKVLNRSHNETSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSP  388 (650)
T ss_pred             CCcccchhhhccccccCCccceeeeeec-CCceeeecCCCCccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccc
Confidence            4556677777766778889999999999 9999999999999999999999998875332111    1 1 111111100


Q ss_pred             ccccCCCCCCCCCC-----------C--CCCCCCCCCChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccccc-cc
Q psy5716          80 KFASASTSPRKSSA-----------T--EATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQ-HC  145 (294)
Q Consensus        80 k~~~~~~k~rk~s~-----------~--~~~~~~spk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~L~-~~  145 (294)
                      ... .....++.++           .  ............-..++.+.+....-..  ...+...+....+||++|+ .|
T Consensus       389 ~~~-~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~~~l~~~~s~rp~v~--s~~~~g~~k~~~vFGs~Lealc  465 (650)
T KOG1450|consen  389 ESH-TSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQKKLTKNFSTRPIVQ--SSREPGKPKFDKVFGSPLEALC  465 (650)
T ss_pred             ccc-ccCcccccCcccccccccccccceecCCcccccccchHHHHHHhhhccchhh--hccccCccccCcccCccHHHHh
Confidence            000 0000000000           0  0001101111122223333333322111  1112234566899999998 66


Q ss_pred             cccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCC
Q psy5716         146 VSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS  208 (294)
Q Consensus       146 ~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~p  208 (294)
                      .+....+|.                 ||||++|+...|++|+..+|.  +..+++.+..|.|+|+|+++||.||||||+|
T Consensus       466 ~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~--d~~l~l~~~~~~dihai~galK~ffreLpdp  543 (650)
T KOG1450|consen  466 QRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQ--DNSLDLADDRWDDIHAITGALKTFFRELPDP  543 (650)
T ss_pred             hccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCc--cccccccccchhHHHHHHHHHHHHHHhcCCc
Confidence            666677776                 999999999999999999994  4446777888999999999999999999999


Q ss_pred             CCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         209 LLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       209 Li~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      |++..++.+|..+....+...+...+++++..||.+||.||+||+.||++|..|+++|||+.+||||||||+|+.+.++
T Consensus       544 L~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~  622 (650)
T KOG1450|consen  544 LFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE  622 (650)
T ss_pred             ccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEecccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997554

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.97  E-value=5e-31  Score=221.93  Aligned_cols=148  Identities=40%  Similarity=0.635  Sum_probs=132.7

Q ss_pred             ccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716         139 GVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY  215 (294)
Q Consensus       139 gv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~  215 (294)
                      +..+..|+.+....+.   ||||++|+..+++++++.++++...+..   ...+|+|++|++||.|||+||+||||.+.|
T Consensus         4 P~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~   80 (174)
T smart00324        4 PIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLD---LSEYDVHDVAGLLKLFLRELPEPLIPYELY   80 (174)
T ss_pred             ChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcc---cccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            4456778777744433   9999999999999999999998765321   234899999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      +.|+++.+..+.++++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~  154 (174)
T smart00324       81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV  154 (174)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence            99999998888899999999999999999999999999999999999999999999999999999999987664

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG2200|consensus

Probab=99.97  E-value=2e-30  Score=242.80  Aligned_cols=154  Identities=24%  Similarity=0.362  Sum_probs=137.4

Q ss_pred             CCCCCCCCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcC-ccCCCCCCc
Q psy5716         129 HPPYPPGSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDAS-VLEQDPRWS  189 (294)
Q Consensus       129 ~~~~~~~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~-~~~~~~~~~  189 (294)
                      .+.+.++.+|||||...+... ..+|.                 ||||++|.+++|+.|++.++...+.. +.   ++..
T Consensus       292 k~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~---~d~~  368 (674)
T KOG2200|consen  292 KVDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFN---WDSQ  368 (674)
T ss_pred             CCccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccc---cchh
Confidence            346788999999999877654 44554                 99999999999999999998865542 22   2225


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCC
Q psy5716         190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKME  269 (294)
Q Consensus       190 dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~  269 (294)
                      ..|++|++||+|||+||+||||.++.+.|+.+.......+++++++.++..||.+||++|+.|+.||++|+.++++|+||
T Consensus       369 ~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT  448 (674)
T KOG2200|consen  369 SAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMT  448 (674)
T ss_pred             hhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHhhcccccccC
Q psy5716         270 ARNLAIMFGPTLVRAG  285 (294)
Q Consensus       270 ~~nLAivf~P~L~~~~  285 (294)
                      +.|||+||||+||...
T Consensus       449 ~~NlsvcmAPsLF~l~  464 (674)
T KOG2200|consen  449 LMNLSVCMAPSLFHLN  464 (674)
T ss_pred             hhhhhhhhcchHHhhc
Confidence            9999999999999873

>KOG4269|consensus

Probab=99.97  E-value=2e-30  Score=251.34  Aligned_cols=158  Identities=31%  Similarity=0.557  Sum_probs=138.2

Q ss_pred             CCCCCCccccccc-------------------ccccccc-ccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCC
Q psy5716         131 PYPPGSNIGVPLQ-------------------HCVSVNL-LCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPR  187 (294)
Q Consensus       131 ~~~~~~~fgv~L~-------------------~~~~~~~-~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~  187 (294)
                      .....++||.|+.                   .|+++.+ ..++   ||||++|++..|+.|++.||.+.+.++...+. 
T Consensus       893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~-  971 (1112)
T KOG4269|consen  893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS-  971 (1112)
T ss_pred             cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc-
Confidence            3455688995443                   3666664 3343   99999999999999999999986665655543 


Q ss_pred             CcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccC
Q psy5716         188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNK  267 (294)
Q Consensus       188 ~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~Nk  267 (294)
                      ..|||+|||+||+|||+||+|||+.++|..|.......++....-.+..+|.+||++|..+|.+|+.||++|++++.+||
T Consensus       972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen  972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred             cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence            38999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             CCccchhHhhcccccccCCCCc
Q psy5716         268 MEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       268 M~~~nLAivf~P~L~~~~~~~~  289 (294)
                      |+++||||||+|+|.+|.+.-+
T Consensus      1052 MnlrNlciVFsPTLniPse~~~ 1073 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPSEIES 1073 (1112)
T ss_pred             ccccceeeeecccccCcHHhhh
Confidence            9999999999999999976433

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.97  E-value=2.1e-30  Score=226.01  Aligned_cols=141  Identities=18%  Similarity=0.325  Sum_probs=122.9

Q ss_pred             cccccccccccccccCC---ceeecCCCHHH----HHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAA----VSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~----i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      .+..|..|+.+++..+.   ||||++|+...    ++++++.+|+|.+..      ...|+|++|++||.|||+||||||
T Consensus        50 iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~------~~~~~~~va~~LK~fLr~LpePli  123 (220)
T cd04380          50 IPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN------SPGSAESVAEALLLFLESLPDPII  123 (220)
T ss_pred             cCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC------CCCCHHHHHHHHHHHHHhCCCCcc
Confidence            34445689988865444   99999999999    999999999987652      238999999999999999999999


Q ss_pred             CcchHHHHHHhhcCCCHHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         211 TTELYPHFIQADKIEDPATRMATIKKLVH-ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      |+++|+.|+.+.. .+    ...++.++. .||++|+.+|.||+.||++|+++++.|+|++.|||+||||+|+|++.+.+
T Consensus       124 p~~~y~~~~~~~~-~~----~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~  198 (220)
T cd04380         124 PYSLYERLLEAVA-NN----EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAG  198 (220)
T ss_pred             CHHHHHHHHHHhc-Cc----HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccc
Confidence            9999999999862 21    245678888 99999999999999999999999999999999999999999999987654

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.97  E-value=8.1e-30  Score=212.89  Aligned_cols=144  Identities=38%  Similarity=0.620  Sum_probs=129.9

Q ss_pred             ccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHH
Q psy5716         141 PLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH  217 (294)
Q Consensus       141 ~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~  217 (294)
                      .|..|+.+.+..+.   ||||++|+..+++++++.++.+....    +...+|+|++|++||.|||+||+||||.+.|+.
T Consensus         3 ~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~----~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~   78 (169)
T cd00159           3 IIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID----DLEDYDVHDVASLLKLYLRELPEPLIPFELYDE   78 (169)
T ss_pred             HHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHcCCCccCCHHHHHH
Confidence            35677777744333   99999999999999999999987642    223489999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      |+.+....+...++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~  149 (169)
T cd00159          79 FIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD  149 (169)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence            99999888999999999999999999999999999999999999999999999999999999999997654

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.96  E-value=3e-30  Score=212.04  Aligned_cols=144  Identities=37%  Similarity=0.603  Sum_probs=126.7

Q ss_pred             ccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHH
Q psy5716         141 PLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH  217 (294)
Q Consensus       141 ~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~  217 (294)
                      .|..|+.+++..+.   ||||++|+..+++++++.++.+.....   ....+|+|++|++||+||++||+||++.+.|+.
T Consensus         3 ~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~   79 (151)
T PF00620_consen    3 ILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE---NLENYDVHDVASLLKRFLRELPEPLIPSELYDK   79 (151)
T ss_dssp             HHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST---TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc---cccccChhhccccceeeeeccccchhhhhHHHH
Confidence            35667777644433   999999999999999999999876521   234489999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      |+++.+..+.+++++.++.++.+||..|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~  149 (151)
T PF00620_consen   80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS  149 (151)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred             HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence            9999888999999999999999999999999999999999999999999999999999999999999764

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG1451|consensus

Probab=99.96  E-value=2e-29  Score=235.64  Aligned_cols=229  Identities=23%  Similarity=0.365  Sum_probs=175.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccCC
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASAS   85 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~~   85 (294)
                      +.+-|..|.--...+ -.|.++|-+..........+||-++.+...|+.++.-..      +.-.++...          
T Consensus       314 ~~~~lKsC~RRktdS-IdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~e------p~Y~s~~~~----------  376 (812)
T KOG1451|consen  314 ATFKLKSCSRRKTDS-IDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAE------PSYTSGENC----------  376 (812)
T ss_pred             ceEEehhhccCcccc-cccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCC------ccccCcccc----------
Confidence            344455554444333 344589999887556788999999999999999985421      100111000          


Q ss_pred             CCCCCCCCCCCCCCCCCCChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccc-cccccccccccCC---ceeecCC
Q psy5716          86 TSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVP-LQHCVSVNLLCPF---LFPRVPG  161 (294)
Q Consensus        86 ~k~rk~s~~~~~~~~spk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~-L~~~~~~~~~~p~---GIfR~~g  161 (294)
                                    .+.+ ..-.                           .-+|.. +..|+..++..++   |+||..|
T Consensus       377 --------------~~~~-~~qL---------------------------d~iGF~fvrkCI~i~Et~GI~eqGlYR~vG  414 (812)
T KOG1451|consen  377 --------------STYK-QTQL---------------------------DDIGFEFVRKCIDILETSGIHEQGLYRNVG  414 (812)
T ss_pred             --------------chhh-hhhh---------------------------hhhhHHHHHHHHHHHHhcCcccccchhhcc
Confidence                          0000 0000                           122332 4578887766665   9999999


Q ss_pred             CHHHHHHHHHHH-hcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhh
Q psy5716         162 NTAAVSSLTEAV-NKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHE  240 (294)
Q Consensus       162 ~~~~i~~l~~~~-~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  240 (294)
                      ...+|++|...+ |-....+.+......+|+.+|++.||.|||.|||||++++++..||.|++..|.+-|+.+++.++++
T Consensus       415 vns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLVHk  494 (812)
T KOG1451|consen  415 VNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLVHK  494 (812)
T ss_pred             chHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccchhhhHHHHHHHHHh
Confidence            999999997664 3322223333333448999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCccccc
Q psy5716         241 LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV  293 (294)
Q Consensus       241 LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m~  293 (294)
                      ||..||..|..|+.||.+|+.|+.+|.||+.||++||||+|+|+.+++.++||
T Consensus       495 LPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiM  547 (812)
T KOG1451|consen  495 LPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIM  547 (812)
T ss_pred             ccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998886

>KOG4270|consensus

Probab=99.95  E-value=9.9e-29  Score=236.42  Aligned_cols=129  Identities=34%  Similarity=0.633  Sum_probs=122.5

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI  234 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l  234 (294)
                      ||||++|....++.+|+.+|.|......     +.|||++||+||.||||||+|++++.+|++|+.+....+++++.+.+
T Consensus       187 GlFRi~~~~sk~e~lr~~ld~g~v~~~~-----~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~l  261 (577)
T KOG4270|consen  187 GLFRINGEASKVERLREALDCGVVPDQL-----YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLL  261 (577)
T ss_pred             ceeccCCCchHHHHHHHHHcCCcccccc-----cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHH
Confidence            9999999999999999999998765222     48999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      +.++..||+.|+.+|+|++.||..|++++++|||+++||||||||+|+++.++-
T Consensus       262 r~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~  315 (577)
T KOG4270|consen  262 RQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPL  315 (577)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChH
Confidence            999999999999999999999999999999999999999999999999998743

>KOG1117|consensus

Probab=99.94  E-value=3.7e-26  Score=221.00  Aligned_cols=197  Identities=28%  Similarity=0.437  Sum_probs=169.5

Q ss_pred             CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q psy5716          24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPK  103 (294)
Q Consensus        24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~~~k~rk~s~~~~~~~~spk  103 (294)
                      |+.||-|...  |....+|.++..+...|..+|+.++..         +                              .
T Consensus       676 K~~~l~lve~--grTLYI~g~~rldft~W~~AIekaa~~---------~------------------------------g  714 (1186)
T KOG1117|consen  676 KLDVLVLVEK--GRTLYIQGETRLDFTVWHTAIEKAAGT---------D------------------------------G  714 (1186)
T ss_pred             cccceEEEee--ccEEEEecCCcchHHHHHHHHHHHhcC---------C------------------------------c
Confidence            7788999887  899999999999999999999887520         0                              0


Q ss_pred             ChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcC
Q psy5716         104 SKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDAS  180 (294)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~  180 (294)
                      +         .+..             ....+.-++|.+..|+.+....++   ||||.+|...++..|.+.|.++... 
T Consensus       715 t---------~Lqe-------------qqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars-  771 (1186)
T KOG1117|consen  715 T---------ALQE-------------QQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARS-  771 (1186)
T ss_pred             c---------hhhh-------------hhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccce-
Confidence            0         0100             012245678889999999977777   9999999999999999999886553 


Q ss_pred             ccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q psy5716         181 VLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVV  260 (294)
Q Consensus       181 ~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~  260 (294)
                      +.+- +...-|.+|+++||+|||+|++||+|.++|..|++++..++.+++++.+..+|..||..||.||+.|++||.+|.
T Consensus       772 ~~lr-egeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vq  850 (1186)
T KOG1117|consen  772 VKLR-EGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQ  850 (1186)
T ss_pred             eecc-CCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            3332 233778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCccchhHhhcccccccC
Q psy5716         261 DNSEVNKMEARNLAIMFGPTLVRAG  285 (294)
Q Consensus       261 ~~~~~NkM~~~nLAivf~P~L~~~~  285 (294)
                      .+++.|+|+++|||+||||+||...
T Consensus       851 k~s~~N~mnvhNLAlVFa~sLFqTd  875 (1186)
T KOG1117|consen  851 KCSEINQMNVHNLALVFAPSLFQTD  875 (1186)
T ss_pred             HHHHhhhhhhHHHHHHhhhhheecC
Confidence            9999999999999999999999874

>KOG2710|consensus

Probab=99.93  E-value=5.3e-26  Score=210.02  Aligned_cols=145  Identities=31%  Similarity=0.436  Sum_probs=130.2

Q ss_pred             cccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHH
Q psy5716         140 VPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP  216 (294)
Q Consensus       140 v~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~  216 (294)
                      +.++.|..+.....+   ||||++|+..++++|++.|+++.+...+..+++.+.+|++|++||+|||+||+||||.++|+
T Consensus        96 ~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~  175 (412)
T KOG2710|consen   96 RVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYE  175 (412)
T ss_pred             HHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHHH
Confidence            334455555544443   99999999999999999999986654455666779999999999999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccc-----------CCCccchhHhhccccccc
Q psy5716         217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVN-----------KMEARNLAIMFGPTLVRA  284 (294)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~N-----------kM~~~nLAivf~P~L~~~  284 (294)
                      .|+..++....++++..++.++..||..|+++|.+|+.||+.++.|++.|           +|++.|||.||+|+|+..
T Consensus       176 ~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k  254 (412)
T KOG2710|consen  176 SFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK  254 (412)
T ss_pred             HHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhhhc
Confidence            99999999988899999999999999999999999999999999999998           999999999999999994

>KOG4406|consensus

Probab=99.92  E-value=1.8e-25  Score=202.90  Aligned_cols=154  Identities=34%  Similarity=0.538  Sum_probs=133.4

Q ss_pred             CCCCCCccccccccccccc---cccCC------------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCc
Q psy5716         131 PYPPGSNIGVPLQHCVSVN---LLCPF------------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS  189 (294)
Q Consensus       131 ~~~~~~~fgv~L~~~~~~~---~~~p~------------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~  189 (294)
                      .+.+.+.||+||+...+..   +.+|.                  ||||.|++...+.++.+.+|+|..+++.    ...
T Consensus       247 ~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle----~~~  322 (467)
T KOG4406|consen  247 PPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE----VYK  322 (467)
T ss_pred             CCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH----Hhc
Confidence            5667889999998443322   33443                  9999999999999999999999987554    235


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716         190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHE-LPEHHFQTLKYILQHLKRVVDNSEVNKM  268 (294)
Q Consensus       190 dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-LP~~n~~~L~~L~~~L~~v~~~~~~NkM  268 (294)
                      |+|..|.+||.|||+||+||++.++|..+..... .+..++...++++++. ||++|+.++++++.||.+|++|+..|+|
T Consensus       323 ~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~-~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M  401 (467)
T KOG4406|consen  323 DLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN-VDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKM  401 (467)
T ss_pred             cchhhHHHHHHHHhcCCcccchhhhhhhhhcccc-chHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhh
Confidence            6999999999999999999999999998877654 4467788999999997 9999999999999999999999999999


Q ss_pred             CccchhHhhcccccccCCCCc
Q psy5716         269 EARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       269 ~~~nLAivf~P~L~~~~~~~~  289 (294)
                      ++.|||+||||+|+|+.++.+
T Consensus       402 ~~sNLa~vfGpnl~w~~~~s~  422 (467)
T KOG4406|consen  402 TASNLAVVFGPNLLWAQDESL  422 (467)
T ss_pred             ccccceeeecccccccccccc
Confidence            999999999999999986654

>KOG3564|consensus

Probab=99.92  E-value=4e-25  Score=202.79  Aligned_cols=145  Identities=30%  Similarity=0.430  Sum_probs=131.0

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      .++..+-.|+..+|..++   ||||++|....+++|++.|-+|... ..+.   ..|+|++|++||.|||.|.|||||..
T Consensus       361 MIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~-p~~g---~~Dihvic~~lKdFLR~LkePLip~~  436 (604)
T KOG3564|consen  361 MIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTT-PHLG---NDDIHVICCCLKDFLRNLKEPLIPFR  436 (604)
T ss_pred             cchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCC-CccC---CcchhHHHHHHHHHHHhcccccccch
Confidence            344445689988887777   9999999999999999999988775 2222   37999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      ...+|+.++.++|.+..+.++...+..||.+||+||.|||-|+++|++ +..|+|+..|||.+|||+++..+-
T Consensus       437 ~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v  508 (604)
T KOG3564|consen  437 LRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV  508 (604)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence            999999999999999999999999999999999999999999999888 889999999999999999999643

>KOG1453|consensus

Probab=99.90  E-value=5e-24  Score=218.04  Aligned_cols=147  Identities=32%  Similarity=0.590  Sum_probs=128.7

Q ss_pred             ccccccccccc-cccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHH
Q psy5716         137 NIGVPLQHCVS-VNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLL  198 (294)
Q Consensus       137 ~fgv~L~~~~~-~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lL  198 (294)
                      .||+.|..... ....+|.                 ||||++|...+++.|...|+.+... +.+.   ..|+|+++++|
T Consensus       602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~-v~l~---~~dih~vtsVl  677 (918)
T KOG1453|consen  602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDAL-VLLS---TPDIHAVTSVL  677 (918)
T ss_pred             cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccc-eecC---CCChHHHHHHH
Confidence            78888765444 4455665                 9999999999999999999987633 3333   38999999999


Q ss_pred             HHHHhhCCCCCCCcchHHHHHHhhcCCCHH------HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         199 KSFFRRLPDSLLTTELYPHFIQADKIEDPA------TRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       199 K~fLreLP~pLi~~~~~~~~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      |+|||+||+|||++..|+.|+.+.+.....      +.+..+.+++..||+.|+.+|++|+.||.+|+.+++.|+|++.|
T Consensus       678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n  757 (918)
T KOG1453|consen  678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN  757 (918)
T ss_pred             HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence            999999999999999999999999883333      48899999999999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCCC
Q psy5716         273 LAIMFGPTLVRAGDD  287 (294)
Q Consensus       273 LAivf~P~L~~~~~~  287 (294)
                      ||+||||+|+|+++.
T Consensus       758 laivF~Ptllr~~d~  772 (918)
T KOG1453|consen  758 LAIVFAPTLLRPPDG  772 (918)
T ss_pred             ccccccCcccCCCCC
Confidence            999999999999764

>KOG4724|consensus

Probab=99.77  E-value=5.7e-19  Score=168.06  Aligned_cols=151  Identities=24%  Similarity=0.287  Sum_probs=136.3

Q ss_pred             CCCCCCccccccc-cccccccccCC---------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716         131 PYPPGSNIGVPLQ-HCVSVNLLCPF---------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI  194 (294)
Q Consensus       131 ~~~~~~~fgv~L~-~~~~~~~~~p~---------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v  194 (294)
                      ...++..||.||. .|+......|.               ||||..++...+++|++.+|.|.++.++     ...|+++
T Consensus        76 ~~~~~~Lfg~pl~nic~~~~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~-----~~~i~v~  150 (741)
T KOG4724|consen   76 NTADSFLFGWPLTNICVHFRLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLK-----SGEIVVD  150 (741)
T ss_pred             CCCCccccCccchhhcccCCCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccccccc-----ccceEEe
Confidence            3467899999997 67666522222               9999999999999999999999887443     2789999


Q ss_pred             HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716         195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA  274 (294)
Q Consensus       195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA  274 (294)
                      |.++|.|||.+|.-++..++|+.|..+....+.++++.+++++..+||..|..+|+||...| .|..++++|.|+..|||
T Consensus       151 a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla  229 (741)
T KOG4724|consen  151 AAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLA  229 (741)
T ss_pred             ehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HhhcccccccCCC
Q psy5716         275 IMFGPTLVRAGDD  287 (294)
Q Consensus       275 ivf~P~L~~~~~~  287 (294)
                      +|.+|++++....
T Consensus       230 ~cv~p~~l~~~~~  242 (741)
T KOG4724|consen  230 QCVNPIKLKVLTR  242 (741)
T ss_pred             HHhcchhcccccc
Confidence            9999999998543

>KOG1452|consensus

Probab=99.77  E-value=4.2e-19  Score=156.29  Aligned_cols=152  Identities=21%  Similarity=0.232  Sum_probs=126.8

Q ss_pred             CCCccccccccccccc-cccC--------------C---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHH
Q psy5716         134 PGSNIGVPLQHCVSVN-LLCP--------------F---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS  195 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~-~~~p--------------~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va  195 (294)
                      -+++||+.|+..+... +.-|              .   |+|+++|+..+-+-|++.|+..... +.+.-+..-|+++|+
T Consensus       181 lrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~-~el~~E~iPD~nvIt  259 (442)
T KOG1452|consen  181 LRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRD-FELGAESIPDYNVIT  259 (442)
T ss_pred             cccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcc-cccccccCCCcceee
Confidence            3568999888766655 2223              2   9999999999999999999875433 444433447889999


Q ss_pred             HHHHHHHhhCCCCCCCcchHHHHHHhhcC---CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         196 SLLKSFFRRLPDSLLTTELYPHFIQADKI---EDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       196 ~lLK~fLreLP~pLi~~~~~~~~~~~~~~---~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      +++|.||||||||||+...|+...+++..   .|.+...+.+-.+|..|+.+++.+|..+++||.-|..+++.|+|++..
T Consensus       260 g~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~  339 (442)
T KOG1452|consen  260 GDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTR  339 (442)
T ss_pred             cccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHH
Confidence            99999999999999999999888877553   456667788889999999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCC
Q psy5716         273 LAIMFGPTLVRAGD  286 (294)
Q Consensus       273 LAivf~P~L~~~~~  286 (294)
                      ||.||||.||-+.+
T Consensus       340 Ls~i~~P~L~~~~~  353 (442)
T KOG1452|consen  340 LSLIFAPLLFFCLD  353 (442)
T ss_pred             HHHHhhhhHHHhhc
Confidence            99999999997743

>KOG4271|consensus

Probab=99.76  E-value=4.7e-19  Score=173.57  Aligned_cols=146  Identities=27%  Similarity=0.426  Sum_probs=131.7

Q ss_pred             CCCccccccccccccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716         134 PGSNIGVPLQHCVSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS  196 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~  196 (294)
                      ..+.||.|+..|+.....+|.                 ||||++|+.....+++..|.+....++...|   ..+|++|+
T Consensus       914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d---~~v~~vag  990 (1100)
T KOG4271|consen  914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMD---TTVNVVAG  990 (1100)
T ss_pred             hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccc---cccccccC
Confidence            456888888888887777776                 9999999999999999999885443333222   67999999


Q ss_pred             HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716         197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM  276 (294)
Q Consensus       197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv  276 (294)
                      .+|.||.+||+||+|+.+++.+.++..+.|...++..+++.+..||+.|+.+++|++.||.+|+....+|.||..||.||
T Consensus       991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen  991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred             cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q psy5716         277 FGPTLV  282 (294)
Q Consensus       277 f~P~L~  282 (294)
                      |++.|+
T Consensus      1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred             ccchHH
Confidence            999886

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.67  E-value=1.7e-16  Score=134.74  Aligned_cols=141  Identities=21%  Similarity=0.218  Sum_probs=111.7

Q ss_pred             cccccccccCC---ce---eecCCCHHHHHHH-HHHHhcCCCcCccCCC-----CCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716         144 HCVSVNLLCPF---LF---PRVPGNTAAVSSL-TEAVNKGLDASVLEQD-----PRWSDVNVISSLLKSFFRRLPDSLLT  211 (294)
Q Consensus       144 ~~~~~~~~~p~---GI---fR~~g~~~~i~~l-~~~~~~~~~~~~~~~~-----~~~~dv~~va~lLK~fLreLP~pLi~  211 (294)
                      .|.+..+..+.   +|   ||.+++...++.+ +..|+.+... .....     ....|+|+++++||.|+|+||+++++
T Consensus        12 ~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~-~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~   90 (198)
T cd04401          12 NITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQ-LQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVI   90 (198)
T ss_pred             HHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCc-ccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccC
Confidence            34444443443   55   9999999999988 4555654222 11111     34489999999999999999999999


Q ss_pred             c-chHHHHHHhhcCCCHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716         212 T-ELYPHFIQADKIEDPATRMATIKKLVHEL--PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD  287 (294)
Q Consensus       212 ~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~L--P~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~  287 (294)
                      . +.|..|...-+..+.  ...+++.++..+  |+.|+.++..++++|..|+.|+..|+|+..||+++|||.+|..++.
T Consensus        91 ~~~~Y~~F~~~E~~~~~--p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~  167 (198)
T cd04401          91 WWEVYEEFKARERRSNY--PADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG  167 (198)
T ss_pred             CHHHHHHHHHHHHhcCC--cHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence            9 999999986433322  234889999988  8999999999999999999999999999999999999999998664

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.66  E-value=5.5e-16  Score=133.02  Aligned_cols=129  Identities=15%  Similarity=0.201  Sum_probs=108.2

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcch--------HHHHHHHHHHHhhCCCCCCCcchHHHHHHhhc---
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDV--------NVISSLLKSFFRRLPDSLLTTELYPHFIQADK---  223 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv--------~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~---  223 (294)
                      |+||.++-...+...++.++..++.-....+...++-        -+|+.+++.||++|||||+|..+|+.|..++.   
T Consensus        61 ~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~  140 (235)
T cd04405          61 KLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLG  140 (235)
T ss_pred             cccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhc
Confidence            9999999999999999999987665111111111221        27999999999999999999999998888766   


Q ss_pred             CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcc-------cccCCCccchhHhhcccccccCC
Q psy5716         224 IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNS-------EVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       224 ~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~-------~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                      ....+.++++++.++..||++||+.|+.|+.||.+|+++.       ..|+|   |++..|+|+++++.+
T Consensus       141 ~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~  207 (235)
T cd04405         141 NGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKD  207 (235)
T ss_pred             CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccc
Confidence            4458899999999999999999999999999999999994       25777   999999999999974

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.65  E-value=2.3e-16  Score=124.64  Aligned_cols=54  Identities=41%  Similarity=0.660  Sum_probs=45.2

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+|+|.||.|+.|.||+||+|||+|++. ||.||||||.|++||.+||.+|+.++
T Consensus        65 ~~i~L~~a~a~~a~dY~Kr~~VFrL~~~-dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   65 SSISLHHALAEIASDYTKRKNVFRLRTA-DGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             --EE-TT-EEEEETTBTTCSSEEEEE-T-TS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             eEEEecceEEEeCcccccCCeEEEEEeC-CCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            4599999999999999999999999999 99999999999999999999999875

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.54  E-value=1.5e-14  Score=113.28  Aligned_cols=61  Identities=33%  Similarity=0.468  Sum_probs=57.3

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccC
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSA   65 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~   65 (294)
                      .+.+|+|.+|+|+++.+|+||+|||+|++. +|.+|||||.+.+||+.||.+|+.+++..++
T Consensus        56 ~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~-~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s~  116 (117)
T cd01230          56 LKNAISIHHALATRASDYSKKPHVFRLRTA-DWREFLFQTSSLKELQSWIERINVVAAAFSA  116 (117)
T ss_pred             ccceEEeccceeEeeccccCCCcEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHHhccC
Confidence            468999999999999999999999999999 9999999999999999999999998876654

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4370|consensus

Probab=99.27  E-value=5.1e-12  Score=115.52  Aligned_cols=94  Identities=26%  Similarity=0.362  Sum_probs=90.2

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716         189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM  268 (294)
Q Consensus       189 ~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM  268 (294)
                      +.+.+||++||.|||+||++|++.++...|..++.........+.++.++..||.+||.++.+|+-|+..|.+..-.|||
T Consensus       161 l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kl  240 (514)
T KOG4370|consen  161 LTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKL  240 (514)
T ss_pred             cCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence            78899999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             CccchhHhhccccc
Q psy5716         269 EARNLAIMFGPTLV  282 (294)
Q Consensus       269 ~~~nLAivf~P~L~  282 (294)
                      +..||+|+.+|++-
T Consensus       241 n~q~i~i~lspt~q  254 (514)
T KOG4370|consen  241 NKQQIFINLSPTEQ  254 (514)
T ss_pred             chhheeeecchHHH
Confidence            99999999999863

>KOG0932|consensus

Probab=99.23  E-value=9.4e-12  Score=117.33  Aligned_cols=75  Identities=29%  Similarity=0.449  Sum_probs=64.1

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccC
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASA   84 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~   84 (294)
                      ..|.++||..+.|.||+||.|||+|++. ||.+|||||.+.+||++||..|+-+++..++++   -|+.....+++++.
T Consensus       564 navsvHHALAt~AtdY~KKp~Vf~lrtA-dwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPp---fPaaV~Sqkkf~rP  638 (774)
T KOG0932|consen  564 NAVSVHHALATPATDYSKKPHVFKLRTA-DWRVFLFQAPSQEEMQSWIERINLVAAAFSAPP---FPAAVGSQKKFSRP  638 (774)
T ss_pred             hhhhhhhhhcCCCcccccCCceEEEEec-cceeEEEeCCCHHHHHHHHHHHHHHHHhccCCC---Cccccccccccccc
Confidence            4789999999999999999999999999 999999999999999999999999998888765   34443344555543

>KOG3565|consensus

Probab=99.21  E-value=1.2e-11  Score=121.85  Aligned_cols=150  Identities=23%  Similarity=0.307  Sum_probs=130.5

Q ss_pred             CCCCccccccccccccccccCC---ceee-cCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCC
Q psy5716         133 PPGSNIGVPLQHCVSVNLLCPF---LFPR-VPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS  208 (294)
Q Consensus       133 ~~~~~fgv~L~~~~~~~~~~p~---GIfR-~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~p  208 (294)
                      ..+...+..++.|...++....   |||| ++|....+..++..+..|........+   .+... |+++|.|+|.|.+|
T Consensus       213 ~~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~---~~~dS-a~vlk~~~~~le~P  288 (640)
T KOG3565|consen  213 YYFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLND---PDLDS-AGVLKLYFRGLEEP  288 (640)
T ss_pred             CCcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccC---cchhH-HHHHHHHHccCCCc
Confidence            3466777778888888866665   9999 999999999999999888433333332   56666 99999999999999


Q ss_pred             -CCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716         209 -LLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       209 -Li~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~  286 (294)
                       .|+++.|..++++....+..++...++.++..+|..+..++.++..|+.+.++.++.|.|++.|+|+||||+++-.++
T Consensus       289 ~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e  367 (640)
T KOG3565|consen  289 ADFPFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE  367 (640)
T ss_pred             ccCccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence             999999999999998888888889999999999999999999999999999999999999999999999999976644

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.13  E-value=1e-10  Score=89.92  Aligned_cols=53  Identities=43%  Similarity=0.711  Sum_probs=50.0

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..+|+|.+|.++++.+|.||+|||+|+++ +|.+|+|||+++++|.+|+.+|+.
T Consensus        51 ~~~i~l~~~~i~~~~~~~k~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          51 EPPVDLTGAQCEVASDYTKKKHVFRLRLP-DGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             CCcEeccCCEEEecCCcccCceEEEEEec-CCCEEEEECCCHHHHHHHHHHHhc
Confidence            35899999999999999999999999998 999999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=98.14  E-value=4.2e-06  Score=63.17  Aligned_cols=51  Identities=20%  Similarity=0.347  Sum_probs=43.9

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|+|.++.+..+.+ .+|+++|+|.+. +...|+|+|++++++.+|+.+|+.
T Consensus        45 ~~I~L~~~~v~~~~~-~~k~~~F~I~~~-~~~~~~f~a~s~~e~~~Wi~ai~~   95 (96)
T cd01260          45 GLIFLSGFTIESAKE-VKKKYAFKVCHP-VYKSFYFAAETLDDLSQWVNHLIT   95 (96)
T ss_pred             eEEEccCCEEEEchh-cCCceEEEECCC-CCcEEEEEeCCHHHHHHHHHHHHh
Confidence            468999998887654 348999999987 668999999999999999999975

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=98.05  E-value=8.8e-06  Score=60.62  Aligned_cols=51  Identities=24%  Similarity=0.384  Sum_probs=44.3

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|+|.++.+....+..+++++|.|.+. + ..|+|+|++++++.+|+.+|+.
T Consensus        43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~-~-~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          43 KEIDLRRCTVRHNGKQPDRRFCFEVISP-T-KTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             eEEeccceEEecCccccCCceEEEEEcC-C-cEEEEECCCHHHHHHHHHHHhc
Confidence            4688988888877666568999999998 5 8899999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4724|consensus

Probab=98.04  E-value=3.1e-06  Score=82.07  Aligned_cols=147  Identities=17%  Similarity=0.139  Sum_probs=111.0

Q ss_pred             CCccccccccccccccccC--C---------------ceeecCCCHHHHHHH----HHHHhcCCCcCccCCCCCCcchHH
Q psy5716         135 GSNIGVPLQHCVSVNLLCP--F---------------LFPRVPGNTAAVSSL----TEAVNKGLDASVLEQDPRWSDVNV  193 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~~~~p--~---------------GIfR~~g~~~~i~~l----~~~~~~~~~~~~~~~~~~~~dv~~  193 (294)
                      ...||+||+.........|  .               ++||..-..+-+.+-    ...+...    ....+...+.+|.
T Consensus       414 kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~----gr~vdv~sspv~t  489 (741)
T KOG4724|consen  414 KVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSD----GRPVDVPSSPVHT  489 (741)
T ss_pred             hCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhcc----CCcccCCCCCchH
Confidence            4679999985544442222  2               889884433332221    1112221    1122233368999


Q ss_pred             HHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHH--------HHhhCChhHHHHHHHHHHHHHHHHhcccc
Q psy5716         194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKK--------LVHELPEHHFQTLKYILQHLKRVVDNSEV  265 (294)
Q Consensus       194 va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~--------ll~~LP~~n~~~L~~L~~~L~~v~~~~~~  265 (294)
                      +++++|.|+|++|..++..+.+.++..+.-..+++++.++|+.        .....|..++.+....+.-...+..+++.
T Consensus       490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~  569 (741)
T KOG4724|consen  490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE  569 (741)
T ss_pred             HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence            9999999999999999999999999999999999999999999        88889999888877777777788899999


Q ss_pred             cCCCccchhHhhcccccccC
Q psy5716         266 NKMEARNLAIMFGPTLVRAG  285 (294)
Q Consensus       266 NkM~~~nLAivf~P~L~~~~  285 (294)
                      +.|+..|++.|..|++..-.
T Consensus       570 ~s~dsSn~~~csrpn~~tvd  589 (741)
T KOG4724|consen  570 TSNDSSNPGFCSRPNALTVD  589 (741)
T ss_pred             ccccccccCCCCCccccchh
Confidence            99999999999999887653

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=97.97  E-value=2.9e-05  Score=58.08  Aligned_cols=55  Identities=20%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             CcccccCCceeeecccC-----CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDY-----TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~-----~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ...|+|.++.+....+.     .+++|+|.|.+. ++..|+|+|++++++..|+.+|+.+.
T Consensus        44 ~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   44 KGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP-NGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET-TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCceEEEcCccccccccCCCcEEEEEeC-CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            34688999988877666     588999999999 87899999999999999999999864

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=97.95  E-value=2.3e-05  Score=59.15  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ...|+|.+|.+....+.  ++++|.|.+.  +..|.|+|+|++||.+||.+|+..
T Consensus        43 ~G~I~L~~~~~~~~~~~--~~~~F~i~t~--~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          43 LGRVDLSGAAFTYDPRE--EKGRFEIHSN--NEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             cceEECCccEEEcCCCC--CCCEEEEEcC--CcEEEEECCCHHHHHHHHHHHHhh
Confidence            35689999877653322  5899999886  688999999999999999999864

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=97.88  E-value=2.8e-05  Score=59.26  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=43.0

Q ss_pred             cccccCCceeeecccC---CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDY---TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~---~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.++...+-   .+++|+|.|.+.  ...|.|||+|++|+.+||.+|+...
T Consensus        43 ~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~--~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          43 GVINLSTARVEHSEDQAAMVKGPNTFAVCTK--HRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             eEEEecccEEEEccchhhhcCCCcEEEEECC--CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            4578888877765443   347899999887  5789999999999999999997653

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=97.87  E-value=6.5e-05  Score=71.11  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             CcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHh-hCC-hhHHHHHHHHHHHHHHHHhcccc
Q psy5716         188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVH-ELP-EHHFQTLKYILQHLKRVVDNSEV  265 (294)
Q Consensus       188 ~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP-~~n~~~L~~L~~~L~~v~~~~~~  265 (294)
                      ..++|+++++||-.+..||..+++.+.|..|...-+..+-  ...++..++. .|| +.|..++.-++++|..|+.|+..
T Consensus        70 ~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~  147 (420)
T PF08101_consen   70 FTSPHTLISVLKWIWSRLPGGVVGWDSYEEFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKK  147 (420)
T ss_pred             cCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcc
Confidence            3789999999999999999999999999999876443322  2356666664 564 66678999999999999999999


Q ss_pred             cCCCccchhHhhcccccccCCCC
Q psy5716         266 NKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       266 NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      |+|+..-|+-.+|+-.|...+..
T Consensus       148 NglsgrKlsrm~g~WaF~~~~~~  170 (420)
T PF08101_consen  148 NGLSGRKLSRMAGIWAFGHPDFG  170 (420)
T ss_pred             cCCCHHHHHHHHHHHHCCCCCcc
Confidence            99999999999999998876543

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=97.87  E-value=3.4e-05  Score=58.90  Aligned_cols=51  Identities=14%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|+|.+|..-.-..-.+++|+|.|.+. + ..|+|+|+++.|+.+|+.+|.+
T Consensus        50 ~vI~L~~c~~v~~~~d~k~~~~f~i~t~-d-r~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          50 RVIPLESCFNINKRADAKHRHLIALYTR-D-EYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             EEEEccceEEEeeccccccCeEEEEEeC-C-ceEEEEeCCHHHHHHHHHHHhh
Confidence            4789999986544444667899999998 5 6999999999999999999965

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=97.85  E-value=3.8e-05  Score=58.51  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             cccccCCceeeecccCCcC----CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKR----KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~kr----k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ..|||..|..-...+..+|    .|.|++.+.  ...|+|+|+|+.++++||++|+.+
T Consensus        45 g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp--~rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          45 CSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA--DKTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             ceEEcccceEEeeccccccccccCcEEEEEcC--CceEEEEeCCHHHHHHHHHHHHhh
Confidence            6899999997655443333    599999998  589999999999999999999864

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0517|consensus

Probab=97.82  E-value=2.2e-06  Score=90.50  Aligned_cols=59  Identities=36%  Similarity=0.577  Sum_probs=54.8

Q ss_pred             CCCCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           2 TGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         2 ~~~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +++++++++..|.++++.||.||||||.|... +|.+|+|||.++++|..|+.++....+
T Consensus      2352 ~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~-~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2352 VRGEPPLELDMAAIEVASDYHKKKHVFLLQLP-PGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred             ccCCcchhcchhHHHHHHHHHHHhHhhhhcCC-chHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999988 999999999999999999988876543

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=97.73  E-value=7.1e-05  Score=55.28  Aligned_cols=49  Identities=12%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|+|.+|.+...   ..++|+|+|.+. +|..|+|+|++++|+.+|+.+|+.
T Consensus        42 ~~i~l~~~~~~~~---~~~~~~F~i~~~-~~~~~~~~a~s~~e~~~Wi~al~~   90 (91)
T cd01246          42 GTILLSGAVISED---DSDDKCFTIDTG-GDKTLHLRANSEEERQRWVDALEL   90 (91)
T ss_pred             EEEEeceEEEEEC---CCCCcEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHh
Confidence            3477888776553   234899999998 889999999999999999999975

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=97.70  E-value=9.6e-05  Score=55.35  Aligned_cols=50  Identities=12%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ...|+|.+|.+...   ..+++.|.|.+. ++..|.|+|+|+.|+.+|+.+|+.
T Consensus        41 ~G~I~L~~~~i~~~---~~~~~~F~i~~~-~~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          41 RGSIFLKKAIIAAH---EFDENRFDISVN-ENVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             cEEEECcccEEEcC---CCCCCEEEEEeC-CCeEEEEEeCCHHHHHHHHHHHhh
Confidence            45688998876642   234799999887 679999999999999999999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=97.66  E-value=0.00014  Score=57.75  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=43.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCC--------------------eeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSN--------------------TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g--------------------~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.+....+ .+|+++|+|... ++                    ..|+|+|++++|+.+|+.+|+.+.
T Consensus        41 g~I~L~~~~v~~~~~-~~~~~~F~i~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~  113 (125)
T cd01252          41 GIIPLENVSIREVED-PSKPFCFELFSP-SDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI  113 (125)
T ss_pred             EEEECCCcEEEEccc-CCCCeeEEEECC-ccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            357888888776543 568899999887 54                    578899999999999999999876

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.66  E-value=0.0001  Score=56.82  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=40.3

Q ss_pred             cccccCCcee-eecccCC------cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCV-EVACDYT------KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         6 ~~~~l~~~~~-~~a~~~~------krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      -.|+|.++.+ +.+.+..      +++++|+|.+. + ..|.++|++++|+++||.+|+.+
T Consensus        48 G~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-~-r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          48 GSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-E-GTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             eeEECCcceEEEEecCCcCcccccccCccEEEEeC-C-CeEEEEcCCHHHHHHHHHHHHhC
Confidence            4688888754 3444443      46899999997 4 56778999999999999999863

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.63  E-value=0.0001  Score=55.20  Aligned_cols=40  Identities=15%  Similarity=0.388  Sum_probs=36.8

Q ss_pred             cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716          18 ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus        18 a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      +-++-++.|+|-|+.. ++.||+|.|.|+.+|+.|++.|+.
T Consensus        67 ~LEmPD~~nTFvLK~~-~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          67 RLEMPDNLYTFVLKVD-DNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             cccccCcccEEEEEec-CCceEEEEcCCHHHHHHHHHHHhc
Confidence            4568889999999999 999999999999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.51  E-value=0.00035  Score=50.70  Aligned_cols=54  Identities=28%  Similarity=0.411  Sum_probs=46.7

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ....|+|.++.+....+..++.++|.|.+. ++..|+|+++++.|+..|+.+|+.
T Consensus        42 ~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          42 PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-DGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CcceEEcCCCEEEECCCcCCCCcEEEEecC-CCcEEEEEeCCHHHHHHHHHHHhc
Confidence            345688888888877776678999999998 669999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=97.51  E-value=0.00023  Score=54.01  Aligned_cols=51  Identities=10%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             cccccCCceeeec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|+|..+.+..-  .+-.+++|+|++.+. + ..|.+||+++.|+.+||.+|+.
T Consensus        45 g~I~L~~i~~ve~v~~~~~~~~~~fqivt~-~-r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          45 ALIKLAAIKGTEPLSDKSFVNVDIITIVCE-D-DTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             eeEEccceEEEEEcCCcccCCCceEEEEeC-C-CeEEEECCCHHHHHHHHHHHhc
Confidence            4677877777643  233456899999998 5 5899999999999999999975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=97.50  E-value=0.00027  Score=54.17  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .+.|.|.+.  +..|+|+|+++.|+.+||.+|+.+..
T Consensus        67 ~~~F~i~t~--~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          67 WYGVTLVTP--ERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             cceEEEEeC--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            359999997  79999999999999999999999863

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=97.47  E-value=0.00041  Score=52.78  Aligned_cols=53  Identities=11%  Similarity=0.148  Sum_probs=45.1

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..++|.+..++-..+-.+.+|.|+|.+.  ...|.++|.+++|+.+|+.+|++++
T Consensus        45 ~~i~L~~~~V~~~~~~~~~~~~F~I~~~--~ks~~l~A~s~~Ek~~Wi~~i~~aI   97 (99)
T cd01220          45 GHLPLRGMLTEESEHEWGVPHCFTIFGG--QCAITVAASTRAEKEKWLADLSKAI   97 (99)
T ss_pred             EEEEcCceEEeeccCCcCCceeEEEEcC--CeEEEEECCCHHHHHHHHHHHHHHh
Confidence            3578888888866664466899999976  7889999999999999999999876

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.35  E-value=0.00049  Score=52.80  Aligned_cols=51  Identities=22%  Similarity=0.351  Sum_probs=42.1

Q ss_pred             cccccCCceeee-cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~-a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..|||..|..-. +.+.+.++|.|.|.+.  ...|+|.|++++|+++|+.+|+.
T Consensus        51 G~IdL~~~~~V~~~~~~~~~~~~f~I~tp--~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          51 GTIDMNQCTDVVDAEARTGQKFSICILTP--DKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             eEEEccceEEEeecccccCCccEEEEECC--CceEEEEeCCHHHHHHHHHHHHh
Confidence            468898877655 3455667899999998  68999999999999999999963

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=97.33  E-value=0.0009  Score=48.98  Aligned_cols=55  Identities=24%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             CcccccCCceeeecccCC--cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYT--KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~--krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ...++|.++.+....+..  ..+++|.|... ++..|+|+++++.++..|+.+|+.++
T Consensus        45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~-~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTA-DRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             ceEEECCcCEEEeCCCCccCCCceEEEEEec-CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            456788888777665553  67899999998 77799999999999999999998764

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=97.33  E-value=0.00054  Score=52.88  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             CcccccCCceeeec-----ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVA-----CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         5 ~~~~~l~~~~~~~a-----~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ...|||..|.....     ....+++++|++.+.  ...|+|.|++++||.+|+.+|+.+
T Consensus        50 ~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~--~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          50 EFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI--VRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             ceEEECCccEEEcccccccccCcccceEEEEEeC--CccEEEEECCHHHHHHHHHHHHhh
Confidence            35688888765422     122345678999976  679999999999999999999763

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=97.31  E-value=0.0007  Score=51.63  Aligned_cols=51  Identities=25%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .++|.++.+.-. +-..++|.|.|.+. + ..|.++|++++|+.+|+.+|+.++
T Consensus        49 ~i~l~~~~v~~~-~~~~~~~~F~I~~~-~-rsf~l~A~s~eEk~~W~~ai~~~i   99 (101)
T cd01219          49 RIDVSGMQVCEG-DNLERPHSFLVSGK-Q-RCLELQARTQKEKNDWVQAIFSII   99 (101)
T ss_pred             EEecccEEEEeC-CCCCcCceEEEecC-C-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            478888777643 23457999999988 4 899999999999999999999876

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=97.25  E-value=0.00073  Score=51.26  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             ccccCCceeeecccC-CcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDY-TKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~-~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      -|+|..|.+....|+ ..|+|+|+|.+. ++ +.|.+.|.+ +|+.+||.+|+.
T Consensus        46 li~l~~~~V~~v~ds~~~r~~cFel~~~-~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          46 LIDLSDAYLYPVHDSLFGRPNCFQIVER-ALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             eeeccccEEEEccccccCCCeEEEEecC-CCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            367888866654444 578999999998 55 789888888 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=97.19  E-value=0.0011  Score=50.61  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=45.4

Q ss_pred             CCCcccccCCceeeecccC--CcCCCeEEEEecC-CC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716           3 GSCERIDIGHNCVEVACDY--TKRKHVLRLSSPS-SN-TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         3 ~~~~~~~l~~~~~~~a~~~--~krk~vf~l~~~~-~g-~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+++.++|..+.|++..|.  .++|+.|++.+++ +| .+|.|.++|++++..|+++.+.++
T Consensus        42 ~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas  103 (106)
T cd01237          42 NGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS  103 (106)
T ss_pred             CCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence            3466777777777776654  7778999998651 23 689999999999999999998764

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1453|consensus

Probab=97.18  E-value=0.0003  Score=73.29  Aligned_cols=132  Identities=26%  Similarity=0.315  Sum_probs=106.6

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCc--CccCCCCCCcchHHHHHHHHHHHhhC--CCCCCCcchHHHHH-----------
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDA--SVLEQDPRWSDVNVISSLLKSFFRRL--PDSLLTTELYPHFI-----------  219 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~~dv~~va~lLK~fLreL--P~pLi~~~~~~~~~-----------  219 (294)
                      |+||.+|+...+...+..++.....  ++......+.++...++.++.|+|.+  |.+....+.|..|+           
T Consensus       501 ~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~c  580 (918)
T KOG1453|consen  501 GLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVC  580 (918)
T ss_pred             cccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhhcccceeeeec
Confidence            9999999999999999998875422  22222222466777888999999999  99999999999888           


Q ss_pred             -----HhhcCCCHHHHH-------HHHHHHHh----hCChhHHHHHHHHHHHHHHHHhccccc-CCCc-cchhHhhcc--
Q psy5716         220 -----QADKIEDPATRM-------ATIKKLVH----ELPEHHFQTLKYILQHLKRVVDNSEVN-KMEA-RNLAIMFGP--  279 (294)
Q Consensus       220 -----~~~~~~~~~~~~-------~~l~~ll~----~LP~~n~~~L~~L~~~L~~v~~~~~~N-kM~~-~nLAivf~P--  279 (294)
                           ....+....+++       ..+..+..    .+|.....++.++..|+.++.....+| -|+. +||..+|++  
T Consensus       581 hkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~  660 (918)
T KOG1453|consen  581 HKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGD  660 (918)
T ss_pred             cccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCc
Confidence                 344445556666       78888888    999999999999999999999999998 7887 999999999  


Q ss_pred             --cccccCC
Q psy5716         280 --TLVRAGD  286 (294)
Q Consensus       280 --~L~~~~~  286 (294)
                        +++...+
T Consensus       661 ~~v~l~~~d  669 (918)
T KOG1453|consen  661 ALVLLSTPD  669 (918)
T ss_pred             cceecCCCC
Confidence              5555444

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=97.02  E-value=0.0018  Score=48.98  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=39.0

Q ss_pred             cccccCCceee-ec------ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVE-VA------CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         6 ~~~~l~~~~~~-~a------~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ..|+|..+..- ..      .....+.+.|.+.+.  +..|.|+|++++|+.+|+.+|+.+
T Consensus        42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~--~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS--KRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC--CceEEEECCCHHHHHHHHHHHHhh
Confidence            35778775432 21      123356788998775  789999999999999999999875

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd00900 PH-like Pleckstrin homology-like domain

Probab=96.93  E-value=0.0025  Score=46.41  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=42.9

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCC--CeeEEEecCChhHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSS--NTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~--g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      .+++.+..+....+-..++++|.+.+. +  +..+.|++++..++..|+.+|+.
T Consensus        46 ~~~l~~~~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          46 SIPLSEISVEEDPDGSDDPNCFAIVTK-DRGRRVFVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             EEEccceEEEECCCCCCCCceEEEECC-CCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence            477777776665544467899999998 6  89999999999999999999975

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=96.93  E-value=0.0033  Score=48.20  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=44.5

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      -++|.++.+.-..|-..-+|.|+|.+.  ...|.++|+++.|..+|+.+|++++.
T Consensus        47 ~i~L~~~~v~~~~d~~~~~n~f~I~~~--~kSf~v~A~s~~eK~eWl~~i~~ai~   99 (104)
T cd01218          47 ILPLEGVQVESIEDDGIERNGWIIKTP--TKSFAVYAATETEKREWMLHINKCVT   99 (104)
T ss_pred             EEEccceEEEecCCcccccceEEEecC--CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            468888877655554556899999998  67999999999999999999998764

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=96.79  E-value=0.0015  Score=51.49  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             cccccCCceeeec----ccCCcCCCeEEEEecC---------------CCe---eEEEecCChhHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA----CDYTKRKHVLRLSSPS---------------SNT---ELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         6 ~~~~l~~~~~~~a----~~~~krk~vf~l~~~~---------------~g~---e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      -.|+|.+|.....    .+...|+|.|.|+...               ++.   -|+|+|++.+|+.+|+.+|+.
T Consensus        47 g~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~  121 (122)
T cd01263          47 GLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS  121 (122)
T ss_pred             EEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence            4578888887643    4688999999997531               112   389999999999999999975

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=96.67  E-value=0.003  Score=48.18  Aligned_cols=53  Identities=9%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHH
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ   57 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~   57 (294)
                      ..+.++|..|.+..+ +-..|.+.|.|.+......++|||.++.+...||.++.
T Consensus        50 ~~e~~~l~sc~~r~~-~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          50 QDETLTLKSCSRRKT-ESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             cceEEeeeecccccc-CCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            345667766666554 55678899999777222469999999999999999984

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=96.52  E-value=0.0081  Score=46.68  Aligned_cols=52  Identities=10%  Similarity=0.179  Sum_probs=41.3

Q ss_pred             cccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ++|++..+.--.|-..-||.|.|.+. ++..|.|+|.++++..+|+++|..+.
T Consensus        58 ~~l~~~~V~d~~d~~~~knaF~I~~~-~~~s~~l~Akt~eeK~~Wm~~l~~~~  109 (112)
T cd01261          58 FFMRKVDINDKPDSSEYKNAFEIILK-DGNSVIFSAKNAEEKNNWMAALISVQ  109 (112)
T ss_pred             EeeeeeEEEEcCCCcccCceEEEEcC-CCCEEEEEECCHHHHHHHHHHHHHHh
Confidence            66666666543333445999999998 77889999999999999999997764

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=96.42  E-value=0.0076  Score=45.96  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             ccccCCceee---ecccCCcCCCeEEEEecCC-C--eeEEEecCChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVE---VACDYTKRKHVLRLSSPSS-N--TELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~---~a~~~~krk~vf~l~~~~~-g--~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      .++|.+..+.   +......|+|.|.+... + +  -+-.|+|++++||.+|+.+|+.+
T Consensus        44 ~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~-~~~~~~~r~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          44 LPPLNNFSVAECQLMKTERPRPNTFIIRCL-QWTTVIERTFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             ccccCCeEEeeeeeeeccCCCcceEEEEec-cCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence            3455555542   21112457799999843 2 1  22367899999999999999875

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.24  E-value=0.0057  Score=59.83  Aligned_cols=46  Identities=24%  Similarity=0.415  Sum_probs=41.2

Q ss_pred             eeeecccCCc--CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          14 CVEVACDYTK--RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        14 ~~~~a~~~~k--rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .|.+...|++  ++|||-+.+. +|..++|||.++.++..|+.+||...
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (496)
T PTZ00283        442 VFPVPSKYTGSNAAHVFAVAFK-TGRRLLFQARSDPERDAWMQKIQSVL  489 (496)
T ss_pred             cccccHHhhCCCCCcEEEEEec-CCcEEEEecCCchhHHHHHHHHHHhc
Confidence            3456667888  9999999999 99999999999999999999999875

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=95.33  E-value=0.044  Score=41.56  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .++|.+-.+.--.|-..=||.|++.+.  ..++++||+++++-.+|+..|+++.
T Consensus        47 ~~~L~~i~V~ni~D~~~~kNafki~t~--~~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          47 TYSLNSVAVVNVKDRENAKKVLKLLIF--PESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             EEehHHeEEEecCCCcCcCceEEEEeC--CccEEEEeCCHHHHHHHHHHHHHHh
Confidence            455555444422222234999999998  6789999999999999999998863

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=94.90  E-value=0.054  Score=42.83  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             cCCCeEEEEecC--CC--eeEEEecCChhHHHHHHHHHH
Q psy5716          23 KRKHVLRLSSPS--SN--TELLLQADDTLTMAHWIRDLQ   57 (294)
Q Consensus        23 krk~vf~l~~~~--~g--~e~l~qa~~~~~~~~W~~~i~   57 (294)
                      ..+|.|+++...  +|  .+++|+|++++|+..||.++.
T Consensus        81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            468999997441  23  679999999999999999994

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=94.77  E-value=0.095  Score=38.92  Aligned_cols=47  Identities=19%  Similarity=0.387  Sum_probs=36.1

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      .|+|..|.+.+    ++++.-|-|.+  +...|.+.|.|+.+.+.|+.+|+.+
T Consensus        42 si~v~~a~is~----~~~~~~I~ids--g~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   42 SIDVSLAVISA----NKKSRRIDIDS--GDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             EEEccceEEEe----cCCCCEEEEEc--CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            46676675554    34556677765  4788999999999999999999864

>KOG0521|consensus

Probab=94.30  E-value=0.065  Score=55.06  Aligned_cols=55  Identities=24%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      -..||+-|.+....+...|+..|++.+.  ...|++||+|+.+...||.+|++.+..
T Consensus       316 ~~~dL~~csvk~~~~~~drr~CF~iiS~--tks~~lQAes~~d~~~Wi~~i~nsi~s  370 (785)
T KOG0521|consen  316 LIEDLRTCSVKPDAEQRDRRFCFEIISP--TKSYLLQAESEKDCQDWISALQNSILS  370 (785)
T ss_pred             ccccchhccccCCcccccceeeEEEecC--CcceEEecCchhHHHHHHHHHHHHHHH
Confidence            3468888999888888899999999987  567999999999999999999997764

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=94.22  E-value=0.075  Score=51.61  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=35.5

Q ss_pred             CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          21 YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        21 ~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      -.+++|+|.+.+. +|..+.|+++++.++.+|+.+||++.
T Consensus       438 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        438 SQKHPNQLVLWFN-NGQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             cCCCCceEEEEec-CCcEEEEecCChHHHHHHHHHHHHHh
Confidence            4458999999999 89999999999999999999999864

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=94.20  E-value=0.089  Score=41.40  Aligned_cols=35  Identities=20%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716          22 TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus        22 ~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      +.++|-|+|.+.  ...|.|.|+++.++.+|+++|+.
T Consensus        86 ~~~~~~~~i~t~--~R~~~l~a~s~~~~~~Wi~~i~~  120 (121)
T cd01254          86 TGLRHGLKITNS--NRSLKLKCKSSRKLKQWMASIED  120 (121)
T ss_pred             CCCceEEEEEcC--CcEEEEEeCCHHHHHHHHHHHHh
Confidence            566889999887  78999999999999999999986

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=93.92  E-value=0.2  Score=38.64  Aligned_cols=52  Identities=21%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             ccccCCceeeecccCCc------CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTK------RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~k------rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      .|+|+.+.+.--.|-.+      =+|-|+|...+.+.-|+|.|.++++-..|++++..
T Consensus        48 ri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          48 RIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             EEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence            46677777665444332      39999999984467899999999999999999965

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1449|consensus

Probab=92.64  E-value=0.014  Score=56.57  Aligned_cols=84  Identities=25%  Similarity=0.491  Sum_probs=66.3

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716         189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM  268 (294)
Q Consensus       189 ~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM  268 (294)
                      .|+.++..+++-|.+.+|.|+.. ..|      .+.....+.+..++-.+...++.|+.+-++|..||.+.+.-.     
T Consensus       272 ~di~v~S~d~dp~s~Q~~pp~~~-~~~------~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-----  339 (670)
T KOG1449|consen  272 SDIVVESWDMDPYSRQLPPPYPK-EAF------EKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-----  339 (670)
T ss_pred             cceeeeccccChhhhhcCCCCcc-ccc------ccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence            68899999999999999999543 221      222333445566666777899999999999999999887733     


Q ss_pred             CccchhHhhcccccccCC
Q psy5716         269 EARNLAIMFGPTLVRAGD  286 (294)
Q Consensus       269 ~~~nLAivf~P~L~~~~~  286 (294)
                        .+++|++.|+++|++.
T Consensus       340 --~s~~I~~~~~~~r~pp  355 (670)
T KOG1449|consen  340 --KSLAIVWSPNLFRPPP  355 (670)
T ss_pred             --ccceeecCCCCCCCCC
Confidence              8999999999999965

>KOG3523|consensus

Probab=92.15  E-value=0.15  Score=49.92  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=32.9

Q ss_pred             ccCCcCCCeEEEEecC----CCeeEEEecCChhHHHHHHHHHHH
Q psy5716          19 CDYTKRKHVLRLSSPS----SNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus        19 ~~~~krk~vf~l~~~~----~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      .....++|+|+++.-.    -..||||+|++..||+.||.++.-
T Consensus       549 ~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p  592 (695)
T KOG3523|consen  549 NSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRP  592 (695)
T ss_pred             cccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcCC
Confidence            3466789999998761    237899999999999999999953

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=91.81  E-value=0.33  Score=37.57  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=27.0

Q ss_pred             CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716          25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus        25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      .+||.+.|.  ..+|.|.+++.+|+.+|+.+|+++
T Consensus        80 ~~~~~i~T~--~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   80 LKVFSIFTP--TKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SEEEEEE-S--S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCCcEEECC--CcEEEEEECCHHHHHHHHHHHHhC
Confidence            568888777  568999999999999999999874

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=91.39  E-value=0.52  Score=36.28  Aligned_cols=52  Identities=13%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      -+.|.|..+....|-.+.+|.|.+... .=.--++-+.+..|+.+|+..++..
T Consensus        57 kLPL~~i~v~~lEd~e~~~~aFeI~G~-li~~i~v~C~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          57 KLPLTGIIVTRLEDTEALKNAFEISGP-LIERIVVVCNNPQDAQEWVELLNAN  108 (111)
T ss_pred             eecccccEEechHhccCccceEEEecc-CcCcEEEEeCCHHHHHHHHHHHHhh
Confidence            367888888887788889999999988 6678899999999999999999875

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=90.19  E-value=0.64  Score=35.83  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHH
Q psy5716          22 TKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus        22 ~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      .+|.++|-+++. .| ...+|..+...|+..|-++|+.
T Consensus        71 ~~~~~~F~irtg-~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          71 DQRDNCFLIRTG-TQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCCceEEEEEcC-CceeeEEEEecCHHHHHHHHHHHhc
Confidence            378899999999 88 9999999999999999999974

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4370|consensus

Probab=90.05  E-value=1.5  Score=41.51  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCC-------CH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIE-------DP  227 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~-------~~  227 (294)
                      |++|.+...++.++++..-+.|.+-  ..     .|+|..++..|+|++.+|||++|-++-.-+.++++..       +.
T Consensus        91 ~~s~~~~eksr~~e~k~k~kk~~k~--~~-----aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p  163 (514)
T KOG4370|consen   91 GISRLSPEKSRLDELKRKAKKGEKM--IF-----ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTP  163 (514)
T ss_pred             cccccCcccchhHHHHHhhhhhhhh--hH-----HHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCc
Confidence            9999999999999998887776554  22     7999999999999999999999977655555554311       12


Q ss_pred             HHHHHHHHHHHhhCChh
Q psy5716         228 ATRMATIKKLVHELPEH  244 (294)
Q Consensus       228 ~~~~~~l~~ll~~LP~~  244 (294)
                      ...-..++..+..||..
T Consensus       164 ~tvcSllk~~lr~lpen  180 (514)
T KOG4370|consen  164 KTVCSLLKSRLRRLPEN  180 (514)
T ss_pred             hhHHHHHHHHHhhcchh
Confidence            22335556666677754

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=90.02  E-value=0.83  Score=34.50  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716          25 KHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        25 k~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+-|.|...+.+ ..|.|||.+.++...|+++|+.+.
T Consensus        59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            688999776223 489999999999999999998864

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=89.37  E-value=0.88  Score=35.46  Aligned_cols=37  Identities=14%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             cCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716          23 KRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        23 krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      +-+|.|.|... +| ..|.|.+.++++...|++++..+.
T Consensus        74 ~~~~~f~L~~~-~~~~~~~f~~Ktee~K~kWm~al~~a~  111 (116)
T cd01223          74 RWKYGFYLAHK-QGKTGFTFYFKTEHLRKKWLKALEMAM  111 (116)
T ss_pred             ceEEEEEEEec-CCCccEEEEeCCHHHHHHHHHHHHHHH
Confidence            45899999988 65 899999999999999999997654

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=88.64  E-value=1.4  Score=34.35  Aligned_cols=39  Identities=18%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             CcCCCeEEEEecC-CCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          22 TKRKHVLRLSSPS-SNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        22 ~krk~vf~l~~~~-~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ...|+.+..+.+. ....|.+||.+.++-+.|+..|+...
T Consensus        73 d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          73 DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            3455555445441 13689999999999999999998864

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=87.79  E-value=1.3  Score=33.95  Aligned_cols=43  Identities=16%  Similarity=0.498  Sum_probs=36.7

Q ss_pred             ecccCC--cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          17 VACDYT--KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        17 ~a~~~~--krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      +..|++  |-.|...++.. +|..++++++|+-++.+|...|++.-
T Consensus        54 V~~e~~~iK~~~CI~ik~k-~~~k~vlt~~d~i~l~qW~~elr~a~   98 (116)
T cd01240          54 VSVEFQQIKEENCILLKIR-DEKKIVLTNSDEIELKQWKKELRDAH   98 (116)
T ss_pred             cchhheeeccCceEEEEEc-CCceEEEecCCcHHHHHHHHHHHHHH
Confidence            344444  77899999999 89999999999999999999998753

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>KOG4271|consensus

Probab=85.69  E-value=0.82  Score=47.09  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             cchH--HHHHHHH--HHHhhCCCCCCCcchHHHHHHh--hcCCCHHHHHHHHHHHH-hh--CChhHHH----HHHHHHHH
Q psy5716         189 SDVN--VISSLLK--SFFRRLPDSLLTTELYPHFIQA--DKIEDPATRMATIKKLV-HE--LPEHHFQ----TLKYILQH  255 (294)
Q Consensus       189 ~dv~--~va~lLK--~fLreLP~pLi~~~~~~~~~~~--~~~~~~~~~~~~l~~ll-~~--LP~~n~~----~L~~L~~~  255 (294)
                      .++|  .|...++  .-||..+..+.+......+..+  +...-.+.|+..++..+ ..  .|.+|+.    ++..++..
T Consensus       427 ~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~  506 (1100)
T KOG4271|consen  427 QQPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMC  506 (1100)
T ss_pred             cCcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHH
Confidence            4777  4677777  7788888777776655444444  44444566777666544 44  6887776    77777777


Q ss_pred             HHHHHhcccccCCCcc-chhHhhcc-cccc
Q psy5716         256 LKRVVDNSEVNKMEAR-NLAIMFGP-TLVR  283 (294)
Q Consensus       256 L~~v~~~~~~NkM~~~-nLAivf~P-~L~~  283 (294)
                      +..+..++..|.|++. ..+.|.+| .|++
T Consensus       507 m~~g~~~s~~ni~n~~~~s~aCkS~~llL~  536 (1100)
T KOG4271|consen  507 MMCGDPFSADNILNPVLASAACKSPHLLLR  536 (1100)
T ss_pred             HhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence            7888889999999999 99999999 4666

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=84.81  E-value=3.1  Score=32.56  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             ccccCCceeeec---------ccCCcCCCeEEEEecC-----CCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVA---------CDYTKRKHVLRLSSPS-----SNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~~a---------~~~~krk~vf~l~~~~-----~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      .||+++..+.+.         .+.+....+||+.+..     .+...||-|+++.|.+.|+.++.+.
T Consensus        52 vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          52 VLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            357765554432         2345567889998751     3577899999999999999999875

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=83.87  E-value=3.1  Score=32.08  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716          20 DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus        20 ~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      +-+....+|++...+.+...|+-|+++.|.+.|+.++..-
T Consensus        70 ~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~  109 (112)
T cd01242          70 DAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKK  109 (112)
T ss_pred             CcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence            4555688999999855789999999999999999999754

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930|consensus

Probab=82.71  E-value=3.1  Score=37.39  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             cCCcCCCeEEEEecCC-------------C-------eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          20 DYTKRKHVLRLSSPSS-------------N-------TELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        20 ~~~krk~vf~l~~~~~-------------g-------~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +.-+|.|.|.|-..++             |       +.|-++|.+.+|+.+||.+|+.+++
T Consensus       315 edP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  315 EDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             cCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence            4567888888855422             2       3499999999999999999998764

>KOG0690|consensus

Probab=81.32  E-value=2.8  Score=38.86  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CCcCCCeEEEEecCCCe---eEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716          21 YTKRKHVLRLSSPSSNT---ELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus        21 ~~krk~vf~l~~~~~g~---e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..-|.|.|-++.- ..+   |-.|.+++.++.++|+.+||.+++..
T Consensus        75 erPrPntFiiRcL-QWTTVIERTF~ves~~eRq~W~~AIq~vsn~l  119 (516)
T KOG0690|consen   75 ERPRPNTFIIRCL-QWTTVIERTFYVESAEERQEWIEAIQAVSNRL  119 (516)
T ss_pred             cCCCCceEEEEee-eeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence            4558999999877 554   44689999999999999999988654

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=80.71  E-value=2  Score=32.14  Aligned_cols=31  Identities=10%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             EEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716          28 LRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus        28 f~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      |++... .|..|.+-|.++.|..+|+..|++.
T Consensus        63 ~~~~~~-~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          63 FRIHNK-NGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             hhcccc-CCceEEEEecCHHHHHHHHHHHHHH
Confidence            677776 7999999999999999999999875

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		4e-20
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		6e-20
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		7e-20
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		2e-19
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		4e-16
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		5e-16
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		4e-15
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-14
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		1e-14
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		1e-14
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-14
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		1e-14
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		2e-14
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		4e-14
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		4e-12
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-10
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		1e-08
1pbw_A	216	Structure Of Bcr-Homology (Bh) Domain Length = 216		7e-07
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		1e-06
1dro_A	122	Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTIO		9e-05

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQD---PRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI 219
            +  S L E V    D    + D     + D+N+I+  LK +FR LP  L+T + YP FI
Sbjct: 309 VSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFI 368
Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
           ++ KI DP  ++ T+ + +  LP  H +TL+Y++ HLKRV  + + N M A NL I+FGP
Sbjct: 369 ESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGP 428
Query: 280 TLVRA 284
           TL+R+
Sbjct: 429 TLMRS 433

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQD---PRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI 219
            +  S L E V    D    + D     + D+N+I+  LK +FR LP  L+T + YP FI
Sbjct: 48  VSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFI 107
Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
           ++ KI DP  ++ T+ + +  LP  H +TL+Y++ HLKRV  + + N M A NL I+FGP
Sbjct: 108 ESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGP 167
Query: 280 TLVRA 284
           TL+R+
Sbjct: 168 TLMRS 172

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV GN A +  L   VN+  +  +   D +W D++V++  LK FFR LP+ L     +  
Sbjct: 58  RVSGNLATIQKLRFIVNQ--EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQ 115
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A K +D  TR+  +K LV +LP  +  T+K +  HL ++V  +  N M  ++L I+F
Sbjct: 116 FVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVF 175
Query: 278 GPTLVRAGDD 287
           GPTL+RA ++
Sbjct: 176 GPTLLRAENE 185

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G T  +  +  A ++  + + +  +  + D+N+I+  LK +FR LP  ++T + Y  
Sbjct: 311 RVSGFTEHIEDVKMAFDRDGEKADISANV-YPDINIITGALKLYFRDLPIPVITYDTYSK 369
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           FI A KI +   R+  + +++  LP  H++TL+Y++ HLK+V  N + N M A NL I+F
Sbjct: 370 FIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVF 429
Query: 278 GPTLVRAGDDNMVT 291
           GPTL+R  +D+ +T
Sbjct: 430 GPTLMRPPEDSTLT 443

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQ 247
           W ++  I+S LK++ R LP  L+  +    FI+A K+E+  +R++ I  LVH LPE + Q
Sbjct: 92  W-EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQ 150
Query: 248 TLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV 293
            L  ++ HL +V DN + N M   NL ++FGPTL+R  ++ +  ++
Sbjct: 151 MLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIM 196

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV GN + + SL    ++  +  + E+D     VN ++  +KSFF  LPD L+   +   
Sbjct: 91  RVSGNKSEMESLQRQFDQDHNLDLAEKD---FTVNTVAGAMKSFFSELPDPLVPYNMQID 147
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            ++A KI D   ++  +K+++ + P+ + +  KY++ HL +V  N++VN M + NL+I F
Sbjct: 148 LVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICF 207
Query: 278 GPTLVR 283
            PTL+R
Sbjct: 208 WPTLMR 213

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 62/103 (60%)
Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHEL 241
           L ++P   D++ + SL K +FR LP+ LLT +LY  F  A        R+  I  ++ +L
Sbjct: 82  LTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQL 141
Query: 242 PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 284
           P  H++TL+++++HL  + D   +  M A+NLAI++ P L+R+
Sbjct: 142 PPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRS 184

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   NT  V  + +  N GL         +++++++ + +LK+F R LP+ LLT +LYPH
Sbjct: 85  RRSANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPH 140
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +    I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++F
Sbjct: 141 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 199
Query: 278 GPTLVRAGD 286
           GP L+ A D
Sbjct: 200 GPNLLWAKD 208

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 161 GNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ 220
            NT  V  + +  N GL         +++++++ + +LK+F R LP+ LLT +LYPH + 
Sbjct: 80  ANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 135
Query: 221 ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280
              I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++FGP 
Sbjct: 136 FLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPN 194
Query: 281 LVRAGD 286
           L+ A D
Sbjct: 195 LLWAKD 200

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 151 LCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210
           LC     RV GN     ++ +  ++  + +++  +     VN ++  LK+FF  LPD L+
Sbjct: 53  LCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLI 109
Query: 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEA 270
              L+P  ++A KI D   R+  +K++V +    ++   +Y++ HL RV    ++N M A
Sbjct: 110 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 169
Query: 271 RNLAIMFGPTLVRAGDDN 288
            NL+I F PTL+R   +N
Sbjct: 170 DNLSICFWPTLMRPDFEN 187

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 161 GNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ 220
            NT  V  + +  N GL         +++++++ + +LK+F R LP+ LLT +LYPH + 
Sbjct: 53  ANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 108
Query: 221 ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280
              I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++FGP 
Sbjct: 109 FLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPN 167
Query: 281 LVRAGD 286
           L+ A D
Sbjct: 168 LLWAKD 173

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   NT  V  + +  N GL         +++++++ + +LK+F R LP+ LLT +LYPH
Sbjct: 46  RRSANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPH 101
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +    I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++F
Sbjct: 102 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 160
Query: 278 GPTLVRAGD 286
           GP L+ A D
Sbjct: 161 GPNLLWAKD 169

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 151 LCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210
           LC     RV GN     ++ +  ++  + +++  +     VN ++  LK+FF  LPD L+
Sbjct: 43  LCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLI 99
Query: 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEA 270
              L+P  ++A KI D   R+  +K++V +    ++   +Y++ HL RV    ++N M A
Sbjct: 100 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 271 RNLAIMFGPTLVRAGDDN 288
            NL+I F PTL+R   +N
Sbjct: 160 DNLSICFWPTLMRPDFEN 177

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   NT  V  + +  N GL         +++ +++ + +LK+F R LP+ LLT +LYPH
Sbjct: 49  RRSANTQVVREVQQKYNMGLPVDF----DQYNALHLPAVILKTFLRELPEPLLTFDLYPH 104
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +    I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++F
Sbjct: 105 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 163
Query: 278 GPTLVRAGD 286
           GP L+ A D
Sbjct: 164 GPNLLWAKD 172

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R+ G    V  L E   K L    +    +  D++ I SLLK F R L + LLT  L   
Sbjct: 40  RISGCDRTVKELKE---KFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRA 96
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A +I D    +A + + V ELP+ +  TL +++ HL+RV  +    KM+  NLA +F
Sbjct: 97  FMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANLAKVF 155
Query: 278 GPTLV 282
           GPT+V
Sbjct: 156 GPTIV 160

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   N  +   L E +N G++  +         + VI+S+LK F R +P S+ +++LY H
Sbjct: 49  RQSANVKSCRELKEKLNSGVEVHL-----DCESIFVIASVLKDFLRNIPGSIFSSDLYDH 103
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           ++      +   ++ T+++L+ +LP  +   L+Y+   L  +  +S  N+M A NLA+  
Sbjct: 104 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163
Query: 278 GPTLV 282
            P+++
Sbjct: 164 APSIL 168

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
           I+ LLK FFR LP+ +L  +L+   ++A ++       AT+  L   L +H    L+Y  
Sbjct: 135 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLL-LSCLLADHTVHVLRYFF 193
Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288
             L+ V   S  NKM++ NLA++F P L++  + +
Sbjct: 194 NFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH 228

>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ-A 221
           T + S+L E + + LD      D    DV+V++   K +   LP+ ++   +Y   I  A
Sbjct: 49  TQSSSNLAE-LRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLA 107
Query: 222 DKIEDPATRMATIKKLVHE--LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
            +++     +  +KKL+    +P  ++ TL+Y+L+H  ++   S  N + AR L+ +F P
Sbjct: 108 PEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSP 167
Query: 280 TLVR---AGDDNMVTMV 293
            L R   A  DN   ++
Sbjct: 168 MLFRFSAASSDNTENLI 184

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
           ++ +LK +FR LP+ L+T +L   F+Q  +      R+  IK  +  LP+ + + L+ +L
Sbjct: 91  VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLL 150
Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTL 281
             L  V    + N+M   NLA+   P+L
Sbjct: 151 YFLSDVTAAVKENQMTPTNLAVCLAPSL 178

>pdb|1DRO|A Chain A, Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTION Protein Length = 122

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
            D+ +  +E+A DYTK+KHVLR+   ++    LLQA D   M+ W+  L+  +
Sbjct: 67  YDLQNAAIEIASDYTKKKHVLRV-KLANGALFLLQAHDDTEMSQWVTSLKAQS 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	2e-60
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	2e-59
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	1e-58
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	2e-58
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	3e-58
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	2e-57
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	3e-56
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	3e-56
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	3e-55
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	4e-55
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	1e-53
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	1e-50
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-50
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	1e-47
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	1e-39
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-38
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	2e-11
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	8e-11
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	1e-09
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	3e-09
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	1e-08
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	2e-08
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	3e-07
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	3e-06
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	3e-04

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  191 bits (487), Expect = 2e-60
 Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)

Query: 87  SPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNI-GVPLQHC 145
               SS  E         +  +  +    R  +     P          SN  GVPL   
Sbjct: 4   HHHHSSGRENLYFQGDPRR--RNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTV 61

Query: 146 VSVNLLCPF------------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPR 187
           V+     P                   ++ RV GN + + SL    ++  +  + E+D  
Sbjct: 62  VTPEKPIPIFIERCIEYIEATGLSTEGIY-RVSGNKSEMESLQRQFDQDHNLDLAEKD-- 118

Query: 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQ 247
              VN ++  +KSFF  LPD L+   +    ++A KI D   ++  +K+++ + P+ + +
Sbjct: 119 -FTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHE 177

Query: 248 TLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV 293
             KY++ HL +V  N++VN M + NL+I F PTL+R     M  + 
Sbjct: 178 VFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALT 223

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  187 bits (477), Expect = 2e-59
 Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G +  +  +  A ++  +         + D+N+I+  LK +FR LP  L+T + YP 
Sbjct: 47  RVSGFSDLIEDVKMAFDRDGE-KADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 105

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           FI++ KI DP  ++ T+ + +  LP  H +TL+Y++ HLKRV  + + N M A NL I+F
Sbjct: 106 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 165

Query: 278 GPTLVRAGDDNMVTMVS 294
           GPTL+R+ + + +  ++
Sbjct: 166 GPTLMRSPELDAMAALN 182

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  186 bits (474), Expect = 1e-58
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLE-QDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
           R+ G  + V  L   +     A+  E +     ++  I+S LK++ R LP  L+  +   
Sbjct: 60  RIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQR 119

Query: 217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
            FI+A K+E+  +R++ I  LVH LPE + Q L  ++ HL +V DN + N M   NL ++
Sbjct: 120 SFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVV 179

Query: 277 FGPTLVRAGDDNMVTMV 293
           FGPTL+R  ++ +  ++
Sbjct: 180 FGPTLLRPQEETVAAIM 196

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  184 bits (470), Expect = 2e-58
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 130 PPYPPGSNIGVPLQHCVSVNLLCPF------------------LFPRVPGNTAAVSSLTE 171
                 +  G+PLQ  V+     P                   L+ RV GN     ++ +
Sbjct: 5   SSGWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLY-RVSGNKTDQDNIQK 63

Query: 172 AVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRM 231
             ++  + +++  +     VN ++  LK+FF  LPD L+   L+P  ++A KI D   R+
Sbjct: 64  QFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERL 120

Query: 232 ATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVT 291
             +K++V +    ++   +Y++ HL RV    ++N M A NL+I F PTL+R   +N   
Sbjct: 121 HALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREF 180

Query: 292 MV 293
           + 
Sbjct: 181 LS 182

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  184 bits (470), Expect = 3e-58
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 2/136 (1%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV GN A +  L   VN+  +  +   D +W D++V++  LK FFR LP+ L     +  
Sbjct: 58  RVSGNLATIQKLRFIVNQ--EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQ 115

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A K +D  TR+  +K LV +LP  +  T+K +  HL ++V  +  N M  ++L I+F
Sbjct: 116 FVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVF 175

Query: 278 GPTLVRAGDDNMVTMV 293
           GPTL+RA ++     +
Sbjct: 176 GPTLLRAENETGNMAI 191

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  182 bits (465), Expect = 2e-57
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 18/187 (9%)

Query: 123 GSPNSPHPPYPPGSNIGVPL-QHCVSVNLLCPFLFP----------------RVPGNTAA 165
            S    +  +      G  L +H ++     P +                  R+ G  + 
Sbjct: 7   HSSGRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASN 66

Query: 166 VSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIE 225
           +  L    +       L ++P   D++ + SL K +FR LP+ LLT +LY  F  A    
Sbjct: 67  IQRLRHEFDSE-HVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAA 125

Query: 226 DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG 285
               R+  I  ++ +LP  H++TL+++++HL  + D   +  M A+NLAI++ P L+R+ 
Sbjct: 126 TDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSK 185

Query: 286 DDNMVTM 292
                  
Sbjct: 186 QIESACF 192

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  181 bits (460), Expect = 3e-56
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 28/212 (13%)

Query: 99  PPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVS----------- 147
              P+         K  ++  A A  P  P PP P     GV LQH              
Sbjct: 7   LGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQ-FGVSLQHLQEKNPEQEPIPIV 65

Query: 148 VNLLCPFL----------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSL 197
           +     +L          F R   NT  V  + +  N GL     +    ++++++ + +
Sbjct: 66  LRETVAYLQAHALTTEGIF-RRSANTQVVREVQQKYNMGLPVDFDQ----YNELHLPAVI 120

Query: 198 LKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLK 257
           LK+F R LP+ LLT +LYPH +    I++   R+    +++  LPE ++Q L+++   L 
Sbjct: 121 LKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVLRFLTAFLV 179

Query: 258 RVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289
           ++  +S+ NKM   NLA++FGP L+ A D  +
Sbjct: 180 QISAHSDQNKMTNTNLAVVFGPNLLWAKDAAI 211

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  179 bits (456), Expect = 3e-56
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R+ G    V  L E   +     +L +     D++ I SLLK F R L + LLT  L   
Sbjct: 40  RISGCDRTVKELKEKFLRVKTVPLLSK---VDDIHAICSLLKDFLRNLKEPLLTFRLNRA 96

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F++A +I D    +A + + V ELP+ +  TL +++ HL+RV   S   KM+  NLA +F
Sbjct: 97  FMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDVANLAKVF 155

Query: 278 GPTLVRAGDDNMVTMVS 294
           GPT+V     N   +  
Sbjct: 156 GPTIVAHAVPNPDPVTM 172

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  176 bits (449), Expect = 3e-55
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 22/185 (11%)

Query: 125 PNSPHPPYPPGSNIGVPLQHCVS-------VNLLCPFLFP---------RVPGNTAAVSS 168
           P+SP  P  PG   G+ L +          V  +  FL           R   N  +   
Sbjct: 1   PSSPTSP-MPGQLFGISLPNICENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRE 59

Query: 169 LTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPA 228
           L E +N G++            + VI+S+LK F R +P S+ +++LY H++      +  
Sbjct: 60  LKEKLNSGVEV-----HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDE 114

Query: 229 TRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288
            ++ T+++L+ +LP  +   L+Y+   L  +  +S  N+M A NLA+   P+++     +
Sbjct: 115 EKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASS 174

Query: 289 MVTMV 293
              + 
Sbjct: 175 SPELE 179

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  184 bits (468), Expect = 4e-55
 Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           RV G +  +  +  A ++  +         + D+N+I+  LK +FR LP  L+T + YP 
Sbjct: 308 RVSGFSDLIEDVKMAFDRDGE-KADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 366

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           FI++ KI DP  ++ T+ + +  LP  H +TL+Y++ HLKRV  + + N M A NL I+F
Sbjct: 367 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 426

Query: 278 GPTLVRAGDDNMVTMVS 294
           GPTL+R+ + + +  ++
Sbjct: 427 GPTLMRSPELDAMAALN 443

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  172 bits (438), Expect = 1e-53
 Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   NT  V  + +  N GL     +    ++ +++ + +LK+F R LP+ LLT +LYPH
Sbjct: 49  RRSANTQVVREVQQKYNMGLPVDFDQ----YNALHLPAVILKTFLRELPEPLLTFDLYPH 104

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
            +    I D + R+    +++  LPE ++Q L+++   L ++  +S+ NKM   NLA++F
Sbjct: 105 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 163

Query: 278 GPTLVRAGDDNM 289
           GP L+ A D  +
Sbjct: 164 GPNLLWAKDAAI 175

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  165 bits (420), Expect = 1e-50
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 4/137 (2%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R  G  + + +L +     +D    E          ++ +LK +FR LP+ L+T +L   
Sbjct: 59  RKSGVKSRIQALRQMNEGAIDCVNYE----GQSAYDVADMLKQYFRDLPEPLMTNKLSET 114

Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
           F+Q  +      R+  IK  +  LP+ + + L+ +L  L  V    + N+M   NLA+  
Sbjct: 115 FLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174

Query: 278 GPTLVRAGDDNMVTMVS 294
            P+L             
Sbjct: 175 APSLFHLNTLKRENSSP 191

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  164 bits (418), Expect = 2e-50
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
           R   + + ++ L + ++    +     D    DV+V++   K +   LP+ ++   +Y  
Sbjct: 48  RTQSS-SNLAELRQLLDCDTPSV----DLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSE 102

Query: 218 FIQ-ADKIEDPATRMATIKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 274
            I  A +++     +  +KKL+    +P  ++ TL+Y+L+H  ++   S  N + AR L+
Sbjct: 103 MISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162

Query: 275 IMFGPTLVRAGDDNMVTM 292
            +F P L R    +    
Sbjct: 163 EIFSPMLFRFSAASSDNT 180

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  159 bits (403), Expect = 1e-47
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 59  HAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRI 118
           H    S+   N+        R         R +           K K  +G+  ++    
Sbjct: 3   HHHHHSSGRENLYFQGMWDQRLV-------RLALLQHLRAFYGIKVKGVRGQCDRRRHET 55

Query: 119 QAGA------GSPNSPHPPYPPGSNIGVP--LQHCVSV---NLLCPFLFPRVPGNTAAVS 167
            A        G P +  P         +P  L    +    ++    LF R  G+   + 
Sbjct: 56  AATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLF-RKSGSVIRLK 114

Query: 168 SLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDP 227
           +L   V+ G     L           I+ LLK FFR LP+ +L  +L+   ++A ++   
Sbjct: 115 ALKNKVDHGEG--CLSSA----PPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTE 168

Query: 228 ATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287
             +      L   L +H    L+Y    L+ V   S  NKM++ NLA++F P L++  + 
Sbjct: 169 E-KNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEG 227

Query: 288 NMVTMVS 294
           +     +
Sbjct: 228 HEKMSSN 234

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  136 bits (345), Expect = 1e-39
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 184 QDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPE 243
            D    D   ++  +KSF   LP  L+T E      +A +        A        LP 
Sbjct: 76  SDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPL 132

Query: 244 HHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
           H   TL+++LQHL RV   +       R L   FGP L+RA          
Sbjct: 133 HRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPG 183

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  138 bits (348), Expect = 2e-38
 Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 30/186 (16%)

Query: 125 PNSPHPPYPPGSNIGVPLQHCVS---------VNLLCPFLFP---------RVPGNTAAV 166
                          VPL    S         + LL   LF          + PG    +
Sbjct: 171 EEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEEL 230

Query: 167 SSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIED 226
             + + ++  +       +      + ++  L  F   LP+ ++  ELY   + +     
Sbjct: 231 QQIIDCLDTSIP------ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDS----- 279

Query: 227 PATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286
            A      ++++ +LP  H    +Y++  L+ ++  SE N + A  +A +F   L+R   
Sbjct: 280 -AYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338

Query: 287 DNMVTM 292
           + M   
Sbjct: 339 NLMARQ 344

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 60.6 bits (146), Expect = 2e-11
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
           I +    ++++   TKRK+V RL++   + E L QA+D   M  WI+ +Q  +       
Sbjct: 60  ISVNACLIDISYSETKRKNVFRLTTS--DCECLFQAEDRDDMLAWIKTIQESSNLNEEDT 117

Query: 68  SNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGR 110
              +     +  K  +   S  +          S +      +
Sbjct: 118 GVTNRDLISRRIKEYNNLMSKAEQLPKTPRQSLSIRQTLLGAK 160

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
            D+ +  +E+A DYTK+KHVLR+   +     LLQA D   M+ W+  L+  + + +
Sbjct: 67  YDLQNAAIEIASDYTKKKHVLRVKLANGA-LFLLQAHDDTEMSQWVTSLKAQSDSTA 122

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
           + +      VA DY KRKHV +L       E L QA D   M+ W+R +   AIA   S 
Sbjct: 65  VSLARAQGSVAFDYRKRKHVFKLGLQ-DGKEYLFQAKDEAEMSSWLRVVNA-AIASGPSS 122

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
           +D+    +      + R++VL + +     E LLQ+D    +  W R L+T  I +
Sbjct: 72  VDLRGAALAHGRHLSSRRNVLHIRTI-PGHEFLLQSDHETELRAWHRALRT-VIER 125

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 54.6 bits (130), Expect = 8e-09
 Identities = 25/207 (12%), Positives = 56/207 (27%), Gaps = 8/207 (3%)

Query: 5   CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
              + + ++ V+   ++ K+  V  LS+       L Q      + +WI  + +   A  
Sbjct: 69  KHAVWVENSIVQAVPEHPKKDFVFCLSNS-LGDAFLFQTTSQTELENWITAIHSACAAAV 127

Query: 65  ASESN------ISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRI 118
           A   +      +  +  +K  +        +K    + +     K K         + + 
Sbjct: 128 ARHHHKEDTLRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQN 187

Query: 119 QAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLD 178
                        Y      G  L +   +            G     S  +        
Sbjct: 188 LEQFQMDLFRFRCYLASLQGG-ELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAAR 246

Query: 179 ASVLEQDPRWSDVNVISSLLKSFFRRL 205
              +    R   ++  +S  +S F  L
Sbjct: 247 TGEIGVRRRTQAMSRSASKRRSRFSSL 273

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 8   IDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
           +++    +  A  D + RK+VL L S    +E L+Q D    ++ W + +    I +
Sbjct: 70  VELRGATLSWAPKDKSSRKNVLELRSR-DGSEYLIQHDSEAIISTWHKAIAQ-GIQE 124

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12  HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
               EVA DY K+KHV +L     N E L QA D   M  WI+ + +
Sbjct: 60  EAICEVALDYKKKKHVFKLRLSDGN-EYLFQAKDDEEMNTWIQAISS 105

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 15/116 (12%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 8   IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
           +    + V+   ++ K++HV  LS+       L QA     + +W+  + +   +  A +
Sbjct: 72  LFAEDSIVQSVPEHPKKEHVFCLSNSC-GDVYLFQATSQTDLENWVTAIHSACASLFAKK 130

Query: 68  SN------ISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRR 117
                   +  +  +   +     +  +K +  + ++   PK++       +Q+ +
Sbjct: 131 HGKEDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQ 186

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 4   SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
             +++ I    +    D  +   + +L++P        Q         W + L     + 
Sbjct: 56  PGKKVSI-VGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114

Query: 64  SAS 66
              
Sbjct: 115 RPQ 117

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 136

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 16  EVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
            +  +  ++ +   L    +  E +L+  D+L    W+ D+Q
Sbjct: 86  TMPLEMPEKDNTFVLKV-ENGAEYILETIDSLQKHSWVADIQ 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	100.0
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	100.0
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	100.0
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	100.0
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	100.0
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	100.0
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	100.0
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	100.0
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	100.0
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	100.0
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	100.0
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	100.0
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	100.0
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.98
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.97
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.45
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.34
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.31
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.22
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.17
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.09
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.07
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.03
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	98.69
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	98.48
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	98.37
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	98.36
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	98.36
1wi1_A	126	Calcium-dependent activator protein for secretion,	98.35
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	98.34
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.31
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.27
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.21
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.18
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.13
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	98.11
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.07
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.06
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.04
2d9v_A	130	Pleckstrin homology domain-containing protein fami	98.02
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.02
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.01
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.01
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	97.98
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	97.98
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	97.97
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	97.96
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	97.94
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	97.92
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	97.92
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	97.9
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	97.89
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	97.89
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	97.89
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	97.77
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.76
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	97.73
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	97.7
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	97.7
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	97.69
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	97.68
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	97.67
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	97.66
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	97.65
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	97.6
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	97.51
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	97.25
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	97.24
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	97.22
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.2
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	97.19
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.19
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.1
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	96.83
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	96.36
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	96.31
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	96.26
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	96.24
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	95.75
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	95.27
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	94.87
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	94.86
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	94.08
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	93.86
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	93.63
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	92.91
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	92.32
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	92.08
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	91.68
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	90.94
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	90.67
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	88.73
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	88.2
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	87.63
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	87.6
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	87.0
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	86.34
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	86.14
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	85.78
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	85.71
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	84.21
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	83.63
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	82.72
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	82.39
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	81.93
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	80.82
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	80.41

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=279.18  Aligned_cols=156  Identities=31%  Similarity=0.530  Sum_probs=141.3

Q ss_pred             CCCCCccccccccccccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716         132 YPPGSNIGVPLQHCVSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI  194 (294)
Q Consensus       132 ~~~~~~fgv~L~~~~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v  194 (294)
                      ...+.+||++|+.++.....+|.                 ||||++|+...+++|++.||+|.+.++...+   +|||+|
T Consensus        48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~---~dvh~v  124 (246)
T 3fk2_A           48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKD---FTVNTV  124 (246)
T ss_dssp             -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGT---CCHHHH
T ss_pred             ccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCccccc---CcHHHH
Confidence            34578999999987766556766                 9999999999999999999998765443322   699999


Q ss_pred             HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716         195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA  274 (294)
Q Consensus       195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA  274 (294)
                      |++||.|||+||+||||+++|+.|+.+.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||
T Consensus       125 a~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLA  204 (246)
T 3fk2_A          125 AGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLS  204 (246)
T ss_dssp             HHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccCCCCcc
Q psy5716         275 IMFGPTLVRAGDDNMV  290 (294)
Q Consensus       275 ivf~P~L~~~~~~~~~  290 (294)
                      +||||+|+|+..+++.
T Consensus       205 ivf~P~Llrp~~~~~~  220 (246)
T 3fk2_A          205 ICFWPTLMRPDFSTMD  220 (246)
T ss_dssp             HHHHHHHHCCCSSSSC
T ss_pred             HHhcccccCCCCccHH
Confidence            9999999999776664

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=100.00  E-value=2.2e-38  Score=273.36  Aligned_cols=155  Identities=30%  Similarity=0.521  Sum_probs=138.8

Q ss_pred             CCCCccccccccccccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHH
Q psy5716         133 PPGSNIGVPLQHCVSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS  195 (294)
Q Consensus       133 ~~~~~fgv~L~~~~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va  195 (294)
                      ..+.+||++|+.++.....+|.                 ||||++|+..++++|++.||+|.+.++...   ..|+|+||
T Consensus         8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~---~~d~~~va   84 (209)
T 2ee4_A            8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSM---EVTVNAVA   84 (209)
T ss_dssp             SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHH---TCCHHHHH
T ss_pred             CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccC---CCCHHHHH
Confidence            4567999999876665555665                 999999999999999999999876433211   26999999


Q ss_pred             HHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhH
Q psy5716         196 SLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI  275 (294)
Q Consensus       196 ~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAi  275 (294)
                      ++||+|||+||+||+|+++|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||+
T Consensus        85 ~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLai  164 (209)
T 2ee4_A           85 GALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSI  164 (209)
T ss_dssp             HHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCcc
Q psy5716         276 MFGPTLVRAGDDNMV  290 (294)
Q Consensus       276 vf~P~L~~~~~~~~~  290 (294)
                      ||||+|+|++.++..
T Consensus       165 vf~P~L~~~~~~~~~  179 (209)
T 2ee4_A          165 CFWPTLMRPDFENRE  179 (209)
T ss_dssp             HHHHHHSCCCCCSSC
T ss_pred             HhcccccCCCCccHH
Confidence            999999999776653

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=273.05  Aligned_cols=154  Identities=32%  Similarity=0.528  Sum_probs=135.1

Q ss_pred             CCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716         135 GSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS  196 (294)
Q Consensus       135 ~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~  196 (294)
                      +++||++|+.++... ..+|.                 ||||++|+..++++|++.||++.+. +++....+.|+|++|+
T Consensus         6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~-~d~~~~~~~d~~~va~   84 (202)
T 2osa_A            6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEK-ADISVNMYEDINIITG   84 (202)
T ss_dssp             -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGG-CCCSTTTCCCHHHHHH
T ss_pred             CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCc-cCCCccccccHHHHHH
Confidence            568888887655432 34454                 9999999999999999999985322 3333334579999999


Q ss_pred             HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716         197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM  276 (294)
Q Consensus       197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv  276 (294)
                      +||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||+|
T Consensus        85 lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v  164 (202)
T 2osa_A           85 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV  164 (202)
T ss_dssp             HHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCc
Q psy5716         277 FGPTLVRAGDDNM  289 (294)
Q Consensus       277 f~P~L~~~~~~~~  289 (294)
                      |||+|+++++++.
T Consensus       165 f~P~Ll~~~~~~~  177 (202)
T 2osa_A          165 FGPTLMRSPELDA  177 (202)
T ss_dssp             HHHHHCCCCCCCH
T ss_pred             HccccCCCCCccH
Confidence            9999999987654

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.3e-38  Score=269.35  Aligned_cols=151  Identities=25%  Similarity=0.483  Sum_probs=135.9

Q ss_pred             CCCCCccccccccccccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716         132 YPPGSNIGVPLQHCVSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI  194 (294)
Q Consensus       132 ~~~~~~fgv~L~~~~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v  194 (294)
                      +.++.+||++|+.+++.. .+|.                 ||||++|+...+++|++.+|+|.+.++  +   .+|+|++
T Consensus         7 ~~~~~vFG~~L~~~~~~~-~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~--~---~~d~~~v   80 (201)
T 3msx_B            7 PMPGQLFGISLPNICEND-NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHL--D---CESIFVI   80 (201)
T ss_dssp             ---CCCTTSCHHHHSGGG-CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCT--T---SSCHHHH
T ss_pred             CCCCCeeCCcHHHHhcCC-CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCC--C---cccHHHH
Confidence            456889999998765533 4555                 999999999999999999999876433  2   3799999


Q ss_pred             HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716         195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA  274 (294)
Q Consensus       195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA  274 (294)
                      |++||.|||+||+||+|.++|+.|+.+.+..+.+++++.++.++.+||+.|+.+|+||+.||++|++|++.|+|++.|||
T Consensus        81 a~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa  160 (201)
T 3msx_B           81 ASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLA  160 (201)
T ss_dssp             HHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccCCCC
Q psy5716         275 IMFGPTLVRAGDDN  288 (294)
Q Consensus       275 ivf~P~L~~~~~~~  288 (294)
                      +||||+|+|++++.
T Consensus       161 ~vf~P~ll~~~~~~  174 (201)
T 3msx_B          161 VCVAPSILWPPASS  174 (201)
T ss_dssp             HHHHHHHCCCCTTS
T ss_pred             hhhhccccCCCCCC
Confidence            99999999997754

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=100.00  E-value=7.1e-38  Score=271.08  Aligned_cols=154  Identities=33%  Similarity=0.571  Sum_probs=137.4

Q ss_pred             CCCCcccccccccccc-ccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716         133 PPGSNIGVPLQHCVSV-NLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI  194 (294)
Q Consensus       133 ~~~~~fgv~L~~~~~~-~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v  194 (294)
                      ..+.+||++|+..+.. ...+|.                 ||||++|+..++++|++.+|+|.+.  ++.+..+.|+|+|
T Consensus        15 ~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~--~~~~~~~~dvh~v   92 (214)
T 3byi_A           15 IKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKL--NLDDSQWEDIHVV   92 (214)
T ss_dssp             CCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCC--CTTSGGGCSHHHH
T ss_pred             CcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCC--CCCcccccchHHH
Confidence            3467999999864433 345554                 9999999999999999999998754  3333345699999


Q ss_pred             HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716         195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA  274 (294)
Q Consensus       195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA  274 (294)
                      |++||.|||+||+||+|+++|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||
T Consensus        93 a~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa  172 (214)
T 3byi_A           93 TGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLG  172 (214)
T ss_dssp             HHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccCCCC
Q psy5716         275 IMFGPTLVRAGDDN  288 (294)
Q Consensus       275 ivf~P~L~~~~~~~  288 (294)
                      +||||+|+|++.++
T Consensus       173 ~vf~P~Ll~~~~~~  186 (214)
T 3byi_A          173 IVFGPTLLRAENET  186 (214)
T ss_dssp             HHHHHHHHCCTTSS
T ss_pred             HHhccccCCCCCcc
Confidence            99999999997665

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=100.00  E-value=4.2e-37  Score=263.16  Aligned_cols=152  Identities=33%  Similarity=0.556  Sum_probs=134.1

Q ss_pred             CCCCCcccccccccccccc---ccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcch
Q psy5716         132 YPPGSNIGVPLQHCVSVNL---LCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDV  191 (294)
Q Consensus       132 ~~~~~~fgv~L~~~~~~~~---~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv  191 (294)
                      +.++++||++|+.++....   .+|.                 ||||++|+..++++|++.+|+|.+.++.    .+.|+
T Consensus         3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~----~~~d~   78 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD----QYNAL   78 (198)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGG----GSSCT
T ss_pred             CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCcc----ccccc
Confidence            3456789999987665442   5665                 9999999999999999999998765432    23699


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCcc
Q psy5716         192 NVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEAR  271 (294)
Q Consensus       192 ~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~  271 (294)
                      |++|++||.|||+||+||+|.++|+.|+++.+. +.+++++.++.++.+||+.|+.+|+||+.||++|+++++.|||++.
T Consensus        79 ~~~a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~  157 (198)
T 1tx4_A           79 HLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNT  157 (198)
T ss_dssp             HHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred             hHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Confidence            999999999999999999999999999998764 5678899999999999999999999999999999999999999999


Q ss_pred             chhHhhcccccccCCCC
Q psy5716         272 NLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       272 nLAivf~P~L~~~~~~~  288 (294)
                      |||+||||+|+|++++.
T Consensus       158 nLa~vf~P~Ll~~~~~~  174 (198)
T 1tx4_A          158 NLAVVFGPNLLWAKDAA  174 (198)
T ss_dssp             HHHHHHHHHHCCCSSHH
T ss_pred             HHHhhhcccccCCCCcc
Confidence            99999999999997643

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=100.00  E-value=7e-37  Score=267.44  Aligned_cols=155  Identities=26%  Similarity=0.499  Sum_probs=134.4

Q ss_pred             CCCCCccccccccccc-cccccCC----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716         132 YPPGSNIGVPLQHCVS-VNLLCPF----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI  194 (294)
Q Consensus       132 ~~~~~~fgv~L~~~~~-~~~~~p~----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v  194 (294)
                      ...+++||++|+..+. ....+|.                ||||++|+..++++|++.||++...++.. +....|+|+|
T Consensus        16 ~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~-~~~~~dvh~v   94 (229)
T 3iug_A           16 FQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTK-EPYVQDIHSV   94 (229)
T ss_dssp             --CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCCSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS-TTTTTCHHHH
T ss_pred             CCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCCeecCCcHHHHHHHHHHHhcCCCCCccc-cccccchHHH
Confidence            4567899999975333 3344554                99999999999999999999987654432 2223699999


Q ss_pred             HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716         195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA  274 (294)
Q Consensus       195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA  274 (294)
                      |++||+|||+||+||+|+++|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||
T Consensus        95 a~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  174 (229)
T 3iug_A           95 GSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLA  174 (229)
T ss_dssp             HHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccCCC
Q psy5716         275 IMFGPTLVRAGDD  287 (294)
Q Consensus       275 ivf~P~L~~~~~~  287 (294)
                      +||||+|+|+++.
T Consensus       175 ivf~P~Ll~~~~~  187 (229)
T 3iug_A          175 IVWAPNLLRSKQI  187 (229)
T ss_dssp             HHHHHHHCCC---
T ss_pred             HHHhccccCCCcc
Confidence            9999999999753

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=100.00  E-value=8.6e-37  Score=267.15  Aligned_cols=148  Identities=29%  Similarity=0.487  Sum_probs=124.0

Q ss_pred             cccccccccCC---ceeecCCCHHHHHHHHH-HHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHH
Q psy5716         144 HCVSVNLLCPF---LFPRVPGNTAAVSSLTE-AVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI  219 (294)
Q Consensus       144 ~~~~~~~~~p~---GIfR~~g~~~~i~~l~~-~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~  219 (294)
                      .|+.+++..+.   ||||++|+..+|++|++ .+|.+...++++.+...+|+|+||++||+|||+||+||+|+++|+.|+
T Consensus        43 ~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~  122 (231)
T 1f7c_A           43 KCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFI  122 (231)
T ss_dssp             HHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence            34444433333   99999999999999986 578765333555444458999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCccc
Q psy5716         220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVT  291 (294)
Q Consensus       220 ~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~  291 (294)
                      .+.+..+.++++..++.++.+||+.|+.+|+||+.||++|++|++.|+|++.|||+||||+|+|++.+++..
T Consensus       123 ~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~  194 (231)
T 1f7c_A          123 KAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAA  194 (231)
T ss_dssp             HHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSG
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998766543

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.7e-37  Score=267.77  Aligned_cols=153  Identities=27%  Similarity=0.385  Sum_probs=136.0

Q ss_pred             CCCCCCcccccccccccc-ccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchH
Q psy5716         131 PYPPGSNIGVPLQHCVSV-NLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVN  192 (294)
Q Consensus       131 ~~~~~~~fgv~L~~~~~~-~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~  192 (294)
                      ....+++||+||+..++. ...+|.                 ||||++|+..+|++|++.++.+.+. ++++   .+|+|
T Consensus        14 ~~~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~---~~~~~   89 (228)
T 3kuq_A           14 LYFQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDC-VNYE---GQSAY   89 (228)
T ss_dssp             CBCTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSC-CCCT---TCCHH
T ss_pred             CCCCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCc-CCcc---cCCHH
Confidence            446678999999865433 345665                 9999999999999999999876443 3333   37999


Q ss_pred             HHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       193 ~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      +||++||.|||+||+||||+++|+.|+.+.+..+.+++++.++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|
T Consensus        90 ~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  169 (228)
T 3kuq_A           90 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTN  169 (228)
T ss_dssp             HHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhH
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCCC
Q psy5716         273 LAIMFGPTLVRAGDD  287 (294)
Q Consensus       273 LAivf~P~L~~~~~~  287 (294)
                      ||+||||+|||++..
T Consensus       170 LAivf~P~Ll~~~~~  184 (228)
T 3kuq_A          170 LAVCLAPSLFHLNTL  184 (228)
T ss_dssp             HHHHHHHHHHTCCCC
T ss_pred             hHHHHhhhhcCCCCC
Confidence            999999999998654

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=100.00  E-value=4.6e-36  Score=264.23  Aligned_cols=153  Identities=33%  Similarity=0.576  Sum_probs=134.6

Q ss_pred             CCCCCCcccccccccccccc---ccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcc
Q psy5716         131 PYPPGSNIGVPLQHCVSVNL---LCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSD  190 (294)
Q Consensus       131 ~~~~~~~fgv~L~~~~~~~~---~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~d  190 (294)
                      ...++.+||++|+.++....   .+|.                 ||||++|+..++++|++.||+|.+.++.    .+.|
T Consensus        38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~----~~~d  113 (242)
T 1ow3_A           38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD----QYNE  113 (242)
T ss_dssp             -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGG----GSSC
T ss_pred             CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcc----cccc
Confidence            34567899999986655432   5565                 9999999999999999999998765432    2369


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCc
Q psy5716         191 VNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEA  270 (294)
Q Consensus       191 v~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~  270 (294)
                      +|++|++||.|||+||+||+|+++|+.|+++.+. +.+++++.++.++.+||+.|+.+|+||+.||++|+++++.|+|++
T Consensus       114 v~~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  192 (242)
T 1ow3_A          114 LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTN  192 (242)
T ss_dssp             THHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCH
Confidence            9999999999999999999999999999998774 567889999999999999999999999999999999999999999


Q ss_pred             cchhHhhcccccccCCCC
Q psy5716         271 RNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       271 ~nLAivf~P~L~~~~~~~  288 (294)
                      .|||+||||+|+|++++.
T Consensus       193 ~NLAivf~P~Ll~~~~~~  210 (242)
T 1ow3_A          193 TNLAVVFGPNLLWAKDAA  210 (242)
T ss_dssp             HHHHHHHHHHHCCCSSHH
T ss_pred             HHhHHhhcchhCCCCCcc
Confidence            999999999999997643

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=100.00  E-value=2e-36  Score=262.33  Aligned_cols=130  Identities=22%  Similarity=0.425  Sum_probs=120.3

Q ss_pred             ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhc-CCCHHHHHHH
Q psy5716         155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADK-IEDPATRMAT  233 (294)
Q Consensus       155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~-~~~~~~~~~~  233 (294)
                      ||||++|+..+ ++|++.||+|... +++.+   +|+|+||++||+|||+||+||||+++|+.|+++.+ ..+.+++++.
T Consensus        45 GIfR~sG~~~~-~~l~~~~d~~~~~-~~~~~---~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~  119 (216)
T 1pbw_A           45 TLYRTQSSSNL-AELRQLLDCDTPS-VDLEM---IDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQL  119 (216)
T ss_dssp             TTTSSCCSCCT-THHHHHSCSSSSC-CCGGG---BCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHH
T ss_pred             CeeeCCChHHH-HHHHHHHHcCCCC-CCccc---cCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999 9999999997532 33332   79999999999999999999999999999999985 6788899999


Q ss_pred             HHHHHh--hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         234 IKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       234 l~~ll~--~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      ++.++.  +||+.|+.+|+||+.||++|++|++.|+|++.|||+||||+|+|+++++.
T Consensus       120 l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~  177 (216)
T 1pbw_A          120 LKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASS  177 (216)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCch
Confidence            999999  99999999999999999999999999999999999999999999987764

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=254.29  Aligned_cols=151  Identities=32%  Similarity=0.465  Sum_probs=134.4

Q ss_pred             CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716         134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL  210 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi  210 (294)
                      .+...+..+..|+.+++..+.   ||||++|+..++++|++.||+|.+.. ++.  .+.|+|+||++||.|||+||+||+
T Consensus        13 ~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~-~~~--~~~d~h~va~lLK~flreLpePLi   89 (201)
T 2ovj_A           13 TSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVP-LLS--KVDDIHAICSLLKDFLRNLKEPLL   89 (201)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCC-CGG--GCCCHHHHHHHHHHHHHTSSSCTT
T ss_pred             cCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCc-ccc--ccCCHHHHHHHHHHHHHhCCCCCC
Confidence            455667778899998865555   99999999999999999999986541 121  235999999999999999999999


Q ss_pred             CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716         211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN  288 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~  288 (294)
                      |.++|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++ +.|||++.|||+||||+|+|++.++
T Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~~~~  166 (201)
T 2ovj_A           90 TFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPN  166 (201)
T ss_dssp             CTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCSSSS
T ss_pred             CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999996 6899999999999999999986544

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=258.34  Aligned_cols=149  Identities=26%  Similarity=0.417  Sum_probs=121.9

Q ss_pred             CCCCCcccccccccccc----ccccCC----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcch
Q psy5716         132 YPPGSNIGVPLQHCVSV----NLLCPF----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDV  191 (294)
Q Consensus       132 ~~~~~~fgv~L~~~~~~----~~~~p~----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv  191 (294)
                      ..++.+||++|+.++..    ...+|.                ||||++|+...+++|++.||+|.+. ..     ..|+
T Consensus        59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~-----~~~~  132 (271)
T 3eap_A           59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LS-----SAPP  132 (271)
T ss_dssp             --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGGGTTC--------CHHHHHHHHHHHHHC-----------CCCH
T ss_pred             CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cc-----cccH
Confidence            45688999999976543    133553                9999999999999999999998764 21     2799


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCcc
Q psy5716         192 NVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEAR  271 (294)
Q Consensus       192 ~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~  271 (294)
                      |+||++||.|||+||+||||+++|+.|+.+.+.. .+++...++.++..||+.|+.+|+||+.||++|+++++.|+|++.
T Consensus       133 ~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  211 (271)
T 3eap_A          133 CDIAGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSS  211 (271)
T ss_dssp             HHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence            9999999999999999999999999999998864 466888899999999999999999999999999999999999999


Q ss_pred             chhHhhcccccccCCC
Q psy5716         272 NLAIMFGPTLVRAGDD  287 (294)
Q Consensus       272 nLAivf~P~L~~~~~~  287 (294)
                      |||+||||+|||++++
T Consensus       212 NLAivf~P~Ll~~~~~  227 (271)
T 3eap_A          212 NLAVIFAPNLLQTSEG  227 (271)
T ss_dssp             HHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHhHhccCCCC
Confidence            9999999999999763

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=100.00  E-value=4e-34  Score=273.89  Aligned_cols=156  Identities=32%  Similarity=0.521  Sum_probs=136.7

Q ss_pred             CCCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHH
Q psy5716         134 PGSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS  195 (294)
Q Consensus       134 ~~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va  195 (294)
                      ...+||++|+..+... ..+|.                 ||||++|+...|++|++.||++.+. .++....+.|+|+||
T Consensus       266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~~dv~~va  344 (463)
T 3cxl_A          266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEK-ADISVNMYEDINIIT  344 (463)
T ss_dssp             CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGG-CCCSTTTCCCHHHHH
T ss_pred             cccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCc-CCcccccCCCcchhh
Confidence            4578999998655432 34554                 9999999999999999999985432 222222347999999


Q ss_pred             HHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhH
Q psy5716         196 SLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI  275 (294)
Q Consensus       196 ~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAi  275 (294)
                      ++||+|||+||+||||+++|+.|+++.+..+.+++++.++.++.+||+.|+.+|.||+.||++|+++++.|+|++.|||+
T Consensus       345 ~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi  424 (463)
T 3cxl_A          345 GALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI  424 (463)
T ss_dssp             HHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             hHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCcc
Q psy5716         276 MFGPTLVRAGDDNMV  290 (294)
Q Consensus       276 vf~P~L~~~~~~~~~  290 (294)
                      ||||+|+++++++..
T Consensus       425 vf~P~Ll~~~~~~~~  439 (463)
T 3cxl_A          425 VFGPTLMRSPELDAM  439 (463)
T ss_dssp             HHHHHHCCCCCSCTT
T ss_pred             HhhccccCCCCccHH
Confidence            999999999876543

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.98  E-value=3.7e-34  Score=247.14  Aligned_cols=140  Identities=24%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             CCCCcccccccccccc--c-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchH
Q psy5716         133 PPGSNIGVPLQHCVSV--N-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVN  192 (294)
Q Consensus       133 ~~~~~fgv~L~~~~~~--~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~  192 (294)
                      ...++||++|+.+++.  . ..+|.                 ||||++|+.     |++   .+..  .++.   ..|+|
T Consensus        18 ~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~--~dl~---~~dvh   84 (214)
T 2xs6_A           18 LYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSL--SDVD---QWDTA   84 (214)
T ss_dssp             -------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCC--TTGG---GCCHH
T ss_pred             CCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---cccc--CCCc---cCCHH
Confidence            3456888888766552  1 34554                 999999998     333   1111  2322   38999


Q ss_pred             HHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       193 ~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      +||++||+|||+||+||||+++|+.|+++.+..+..+++.   .++.+||+.|+.+|+||+.||++|+++++.|||++.|
T Consensus        85 ~va~lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  161 (214)
T 2xs6_A           85 ALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRA  161 (214)
T ss_dssp             HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHH
Confidence            9999999999999999999999999999988766554444   7899999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCCCC
Q psy5716         273 LAIMFGPTLVRAGDDN  288 (294)
Q Consensus       273 LAivf~P~L~~~~~~~  288 (294)
                      ||+||||+|+|+++++
T Consensus       162 LAivf~P~Ll~~~~~~  177 (214)
T 2xs6_A          162 LGATFGPLLLRAPPPP  177 (214)
T ss_dssp             HHHHHHHHHHC-----
T ss_pred             HHHHHhhhhcCCcccc
Confidence            9999999999998754

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.97  E-value=2.3e-31  Score=247.33  Aligned_cols=142  Identities=17%  Similarity=0.324  Sum_probs=124.4

Q ss_pred             CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      ..++..+..|+.+++..++   ||||++|+..++++|++.+|+|...++      ..|+|++|++||+|||+||+||||+
T Consensus       197 ~~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~------~~dvh~va~lLK~fLReLPePLi~~  270 (366)
T 3qis_A          197 LQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI------PGSNHSVAEALLIFLEALPEPVICY  270 (366)
T ss_dssp             CSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC------CSCHHHHHHHHHHHHHHCSSCSSCH
T ss_pred             CCcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc------ccCHHHHHHHHHHHHHhCCCCCCcH
Confidence            3445556789998866655   999999999999999999999866422      1599999999999999999999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716         213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM  289 (294)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~  289 (294)
                      ++|+.|+++.+.      .+.++.++.+||+.|+.+|.||+.||++|++|++.|+|++.|||+||||+|||++++++
T Consensus       271 ~ly~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~~  341 (366)
T 3qis_A          271 ELYQRCLDSAYD------PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLM  341 (366)
T ss_dssp             HHHHHHHHHTTC------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC---
T ss_pred             HHHHHHHHHhhh------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcch
Confidence            999999998763      24678899999999999999999999999999999999999999999999999987664

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.45  E-value=9.4e-14  Score=109.29  Aligned_cols=57  Identities=23%  Similarity=0.346  Sum_probs=53.0

Q ss_pred             CCcccccCCceeeecc-cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           4 SCERIDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~-~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...+|+|.||.++++. ||+||||||+|++. +|.+|||||+|++||.+|+.+|+.++.
T Consensus        66 ~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~-~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           66 PEYTVELRGATLSWAPKDKSSRKNVLELRSR-DGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             EEEEEECTTCEEEECCGGGCSSSSEEEEECT-TSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CcceEEcCCCEEEecccccCCCceEEEEECC-CCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            3578999999999996 99999999999999 999999999999999999999998763

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.34  E-value=1.8e-12  Score=101.32  Aligned_cols=56  Identities=36%  Similarity=0.624  Sum_probs=52.6

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +.+|+|.+|.++++.||.||+|||+|++. +|.+|+|||++++||++|+.+|+.++.
T Consensus        64 ~~~i~L~~~~v~~~~d~~kr~~~F~l~t~-~~~~~lfqA~s~~e~~~Wi~ai~~~i~  119 (122)
T 1dro_A           64 EPSYDLQNAAIEIASDYTKKKHVLRVKLA-NGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             CCBCCCSSCCCEECCSSSSSTTEEEEECS-SSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CceEECCCCEEEeCCCCCCCCeEEEEEEc-CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999998 899999999999999999999998764

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.31  E-value=3.1e-12  Score=101.19  Aligned_cols=57  Identities=23%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ...|+|.||.++++.+|.+|+|||+|.+. +|.+|+|||++++||++||.+|+.++..
T Consensus        69 ~g~I~L~~~~v~~~~~~~kr~~~F~l~t~-~~~~yl~qA~s~~e~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A           69 ESSVDLRGAALAHGRHLSSRRNVLHIRTI-PGHEFLLQSDHETELRAWHRALRTVIER  125 (129)
T ss_dssp             SEEEECTTCEEEECTTSCSSSSEEEEECT-TSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEeCCcEEEECCCCCCCCcEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34799999999999999999999999999 9999999999999999999999998754

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.22  E-value=3.1e-11  Score=94.21  Aligned_cols=58  Identities=31%  Similarity=0.496  Sum_probs=53.7

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ...+|+|.+|.++++.+|.+|+|||+|.+. +|.+|+|||++++||++|+.+|+.++..
T Consensus        61 ~~~~i~l~~~~~~~~~~~~~r~~~F~i~~~-~~~~~~f~A~s~~e~~~Wi~ai~~~~~~  118 (123)
T 1wjm_A           61 GEVPVSLARAQGSVAFDYRKRKHVFKLGLQ-DGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             SCCCEECTTCEEEECTTCSSCSSEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEccCcEEeecccccCCCCEEEEEEc-CCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            345799999999999999999999999998 8899999999999999999999998754

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.17  E-value=2.3e-11  Score=107.94  Aligned_cols=59  Identities=17%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ...+|+|.||.++++.||+||||||+|++. +|.+|||||++.+||+.|+.+|+.+++..
T Consensus        68 p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~-~g~~yLFQA~s~eEm~~WI~aI~~a~~~~  126 (279)
T 3a8n_A           68 PKHAVWVENSIVQAVPEHPKKDFVFCLSNS-LGDAFLFQTTSQTELENWITAIHSACAAA  126 (279)
T ss_dssp             CSSCCBCCSCEECCCTTSSSSCSCCCEEET-TTEEEECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEeccCcEEEeccccCCCCcEEEEEcC-CCCEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence            456799999999999999999999999999 99999999999999999999999887644

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.09  E-value=1.5e-10  Score=89.13  Aligned_cols=56  Identities=20%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             CcccccCCceee--ecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVE--VACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~--~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|+|.|+.|.  .+.++.+|+|||+|.+. ++.+|+|||+|++||++||.+|+.++.
T Consensus        44 ~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~-~~~~y~f~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           44 LLSVNMGGEQCGGCRRANTTDRPHAFQVILS-DRPCLELSAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             SEEEETTC-CEEEEEECCCSSCTTEEEEEET-TSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cceEEecCCEEEeeeccCCCCCCeEEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            456899999988  67899999999999988 899999999999999999999998764

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.07  E-value=2.3e-10  Score=89.73  Aligned_cols=56  Identities=14%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|+|.|+.|+ ..|+.+|+|||+|.+.++|.+|+|||+++++|.+|+++|+.++.
T Consensus        57 ~~~i~L~g~~V~-~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           57 GKKVSIVGWMVQ-LPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK  112 (126)
T ss_dssp             SEEEECTTCEEE-CCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CceEEeCCCEEE-ecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            447999999998 78999999999999877899999999999999999999999874

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.03  E-value=5e-10  Score=84.53  Aligned_cols=54  Identities=35%  Similarity=0.572  Sum_probs=50.3

Q ss_pred             CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ...+|+|.+|.++++.++.+|+|+|+|.+. +|.+|+|||++++||.+|+.+|+.
T Consensus        52 ~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~~~A~s~~e~~~Wi~ai~~  105 (106)
T 1btn_A           52 SEVPVSLKEAICEVALDYKKKKHVFKLRLS-DGNEYLFQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             SCCCEECTTCEEEECSSCCSSSSEEEEECT-TSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CcceEECCCCEEEEcccccCCccEEEEEec-CCCEEEEECCCHHHHHHHHHHHhc
Confidence            355799999999999999999999999998 889999999999999999999986

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=98.69  E-value=2.6e-08  Score=88.04  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..|+|.||.+..+.++.+|+|+|+|.+. +|.+|+|||++++||.+|+.+|+.++...
T Consensus        70 g~I~L~~~~v~~~~~~~kk~~~F~I~t~-~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A           70 CALFAEDSIVQSVPEHPKKEHVFCLSNS-CGDVYLFQATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             EEEECTTCEEEECTTCSSCSSEEEEECT-TSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEcCCcEEEECCcCCCCCCEEEEEcC-CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            3589999999988899999999999998 89999999999999999999999887654

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=98.48  E-value=2.2e-07  Score=76.15  Aligned_cols=53  Identities=32%  Similarity=0.540  Sum_probs=47.1

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +|++.+|.++++.++.+|+|+|+|.+. + .+|+|+|++++||.+|+.+|+.++.
T Consensus        59 ~l~~~~~~~~~~~~~~~~~~~F~I~t~-~-r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           59 PISVNACLIDISYSETKRKNVFRLTTS-D-CECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             CEECSSCEEEECSSSCSCSSEEEEECS-S-CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EecccceEEEeccccCCCCCEEEEEeC-C-ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            466666888899999999999999987 4 7899999999999999999998764

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.37  E-value=1.5e-06  Score=66.05  Aligned_cols=58  Identities=17%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             cccccCCceeee-cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhcc
Q psy5716           6 ERIDIGHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS   64 (294)
Q Consensus         6 ~~~~l~~~~~~~-a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~   64 (294)
                      ..|+|.++.+.. ..+..+++|+|+|.+. ++..|+|+|+++.|+..|+.+|+.++....
T Consensus        46 g~i~L~~~~~~~~~~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~  104 (113)
T 1pls_A           46 GMIPLKGSTLTSPCQDFGKRMFVFKITTT-KQQDHFFQAAFLEERDAWVRDINKAIKCIE  104 (113)
T ss_dssp             EEEESSSCCEESSCCSSCCSSSEEEEEET-TTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEcCCCEEEEecCCCCCCccEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence            458899988874 5678889999999998 789999999999999999999999876543

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.36  E-value=6.7e-07  Score=67.56  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=44.3

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .|+|.+|.+....+ .+++|+|+|.+. ++..|.|+|++++|+..|+.+|+.+.
T Consensus        49 ~i~l~~~~v~~~~~-~~~~~~F~i~~~-~~r~~~l~A~s~~e~~~Wi~al~~~~  100 (107)
T 2cof_A           49 PLSLVGCEVVPDPS-PDHLYSFRILHK-GEELAKLEAKSSEEMGHWLGLLLSES  100 (107)
T ss_dssp             EECTTTCEEECCCB-TTBSCEEEEEET-TEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             EEeccceEEEECCC-CCCCeEEEEEeC-CCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            56778887766543 688999999997 67889999999999999999999875

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.36  E-value=8.7e-07  Score=66.98  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ...|+|.++.+....+..+++|+|+|.+. ++..|+|+|+++.|+..|+.+|+.++
T Consensus        48 ~~~i~L~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~~~a~s~~e~~~Wi~al~~a~  102 (109)
T 1wgq_A           48 LESQPLLGFTVTLVKDENSESKVFQLLHK-GMVFYVFKADDAHSTQRWIDAFQEGT  102 (109)
T ss_dssp             SEEEECSSEEEEECCCSSCSSSEEEEEET-TEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEECCCCEEEECCCCCCCCcEEEEEeC-CCeEEEEECCCHHHHHHHHHHHHHHh
Confidence            34689999998887777788999999987 77889999999999999999999875

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.35  E-value=1.7e-06  Score=67.48  Aligned_cols=54  Identities=9%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             cccccCCceeee---cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEV---ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~---a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|.|.|++++.   ..+..+++++|++...  |..|+|+|++++||.+||++|+.++.
T Consensus        54 G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~--~~ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           54 ELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE--GDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             EEEECSSCEEEECCCCSSCCSCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eEEECCCcEEEEecCCcccccCceEEEEecC--CceEEEEcCCHHHHHHHHHHHHHHhc
Confidence            458899999884   3456789999999875  77899999999999999999999874

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.34  E-value=8.8e-07  Score=67.95  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=47.0

Q ss_pred             CcccccCCceeee--cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEV--ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~--a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|.|.||.+..  ..+..+|+|+|+|..  .+..|.|+|+++++|++|+.+|+.++.
T Consensus        50 ~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~--~~~~y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           50 PRTIPLPSCKLSVPDPEERLDSGHVWKLQW--AKQSWYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             CSEECGGGCEEECCCSSSCCSSSEEEEEEE--TTEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             ceEEEcCCCEEEecCcccccCCCCEEEEec--CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            3578999999985  445667999999994  578999999999999999999998763

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=98.31  E-value=7.1e-07  Score=69.55  Aligned_cols=56  Identities=13%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             cccccCCceeeecc-cCCcCCCeEEEEecCC-CeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVAC-DYTKRKHVLRLSSPSS-NTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~-~~~krk~vf~l~~~~~-g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      -.|||.+|.++... +..+|+|+|+|.+.+. ...|+|+|++.+||.+||.+|+.++.
T Consensus        62 G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           62 GILDLNTYNVVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             EEEEGGGEEEEECTTCBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             cEEECCCCEEEEccCCcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            47899999998765 5678999999998722 35799999999999999999998764

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.27  E-value=1.5e-06  Score=64.99  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CcccccCCceeeec---ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           5 CERIDIGHNCVEVA---CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         5 ~~~~~l~~~~~~~a---~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ...|+|.++.+...   .+..+++|+|.|.+. ++..|+|+|++++|+.+|+.+|+.++..
T Consensus        47 ~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~ai~~~i~~  106 (108)
T 1u5d_A           47 KGTFLIKGYSVRMAPHLRRDSKKESCFELTSQ-DRRTYEFTATSPAEARDWVDQISFLLKD  106 (108)
T ss_dssp             SEEEECTTCEEEECGGGCSSGGGGGEEEEECS-SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecceEEEeCCccccccCCcceEEEEcC-CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34589999998765   356678999999998 7799999999999999999999988754

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.21  E-value=2.7e-06  Score=68.10  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CcccccCCceeeecc-cCCcCCCeEEEEecCC-CeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVAC-DYTKRKHVLRLSSPSS-NTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~-~~~krk~vf~l~~~~~-g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      --.|||.||.++... ....|++||+|.+.+. -..|.|.|++.++|.+|+++|++++.
T Consensus        90 kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~  148 (150)
T 2fjl_A           90 RGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ  148 (150)
T ss_dssp             CEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            357999999999765 5678999999998833 34699999999999999999999864

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=3.7e-06  Score=64.03  Aligned_cols=55  Identities=18%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             cccccCCceeeec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+...  .+..+++|+|.|.+. ++..|+|+|++++|+.+|+.+|+.++.
T Consensus        53 g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           53 GSIPLLSFRVAAVQPSDNISRKHTFKAEHA-GVRTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             EEEECSSCEEEECCTTTTCCCSSEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CEEEeCCeEEEEcCccccCCCccEEEEEcC-CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            3688999887643  356789999999877 789999999999999999999998764

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=3.1e-06  Score=65.16  Aligned_cols=54  Identities=17%  Similarity=0.358  Sum_probs=45.8

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..|+|.+|.+...   .+++++|.|.+. ++..|.|+|++++|+..|+.+|+.++...
T Consensus        53 g~I~L~~~~v~~~---~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  106 (120)
T 2d9x_A           53 GTLQLAGAVISPS---DEDSHTFTVNAA-SGEQYKLRATDAKERQHWVSRLQICTQHH  106 (120)
T ss_dssp             EEEECTTCCEECC---SSSSSCEEECCS-SSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEcceEEEEec---CCCCCEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            4689999887653   356799999998 77999999999999999999999877543

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.11  E-value=5.5e-06  Score=66.23  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.+|.+....+ .+++|+|.|.+. ++..|+|+|+++.|+..|+.+|+.++.
T Consensus        71 g~I~L~~~~~~~~~~-~~~~~~F~i~~~-~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           71 GSIFLDSCMGVVQNN-KVRRFAFELKMQ-DKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             EEECTTTCCEECCCC-SSCTTEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cEEecccCEEEecCC-CCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            468999988876533 688999999998 778999999999999999999998764

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.07  E-value=8e-06  Score=61.31  Aligned_cols=54  Identities=15%  Similarity=0.324  Sum_probs=43.2

Q ss_pred             cccccCCceeeec-cc----CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA-CD----YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a-~~----~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.+|.+... ..    ..+++|+|+|.+. ++..|+|+|++++|+.+|+.+|+.++
T Consensus        50 g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           50 GAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-DEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             EEEECTTCEEEEECC--------CCSEEEEECT-TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEccCCcccccCCCceEEEEEeC-CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4589999877533 22    3458999999998 78889999999999999999999864

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.06  E-value=8.2e-06  Score=63.15  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             ccccCCceeeecc--cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVAC--DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~--~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .|+|.++.+....  +..+++|+|+|.+. ++..|+|+|++++|+.+|+.+|+.++.
T Consensus        64 ~i~L~~~~v~~~~~~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           64 SILLPSFQIALLTSEDHINRKYAFKAAHP-NMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             EECGGGSEEEECCGGGCCSSCSEEEEECS-SSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             EEEcCceEEEEcCCcccCCCCeEEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            5788888887643  45688999999998 779999999999999999999998764

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=8.5e-06  Score=62.53  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             cccccCCceeeec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.+...  .+..+++|+|.|.+. ++..|+|+|+++.|+.+|+.+|+.++
T Consensus        64 g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           64 GSIPLLSFRVAAVQPSDNISRKHTFKAEHA-GVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             EEEESTTCCCEECCTTCSCSSSSEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEcCCCEEEEcCccccCCcccEEEEecC-CCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            4688999887643  356788999999877 78999999999999999999999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.02  E-value=1.4e-05  Score=62.49  Aligned_cols=41  Identities=17%  Similarity=0.198  Sum_probs=37.1

Q ss_pred             cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          20 DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        20 ~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +..+|+|+|+|.+. +|..|+|+|++++||.+|+.+|+.+..
T Consensus        74 ~~~~~~~~F~I~~~-~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           74 EGRSRDGLLTVNLR-EGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             SSCCTTTEEEEEET-TSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCcEEEEEeC-CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            46678999999998 788999999999999999999998764

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.02  E-value=1.2e-05  Score=62.69  Aligned_cols=38  Identities=8%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          23 KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        23 krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .+++.|.|.+. +|..|+|+|++++|+.+|+.+|+.++.
T Consensus        87 ~~~~~F~I~t~-~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           87 EENFEFLIVSS-TGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             CCCCCEEEECT-TSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            68899999998 789999999999999999999998764

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.01  E-value=1.3e-05  Score=62.27  Aligned_cols=55  Identities=15%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             cccccCCceeeeccc-----CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACD-----YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~-----~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.+|.+....+     ..+++++|.|.+. ++..|+|+|++++|+.+|+.+|+.++.
T Consensus        61 g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~l~a~s~~e~~~Wi~al~~~~~  120 (129)
T 1x05_A           61 GAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-DEVHYFLQAATPKERTEWIKAIQMASR  120 (129)
T ss_dssp             EEEECTTCEEEECCCCCCSSSCSSCSEEEEECT-TCCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eEEEccCCEEEEccCCccccccCCCeEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            358999988774432     2358999999998 778899999999999999999999874

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.6e-05  Score=60.15  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=46.6

Q ss_pred             ccccCCc-eeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           7 RIDIGHN-CVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         7 ~~~l~~~-~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      .|+|.++ .++...+..+++++|.|.+.  +..|+|+|++++|+.+|+.+|+.++...
T Consensus        50 ~i~L~~~~~v~~~~~~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~ai~~~~~~~  105 (115)
T 2dn6_A           50 DILLDENCCVESLPDKDGKKCLFLVKCF--DKTFEISASDKKKKQEWIQAIHSTIHLL  105 (115)
T ss_dssp             EECCCTTCEEEEECCCTTCCSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCcEEEEECCCCCCCeeEEEEEeC--CCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            5788874 56777777889999999876  6789999999999999999999987543

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=97.98  E-value=1.1e-05  Score=62.54  Aligned_cols=55  Identities=13%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             cccccCCceeeecc-cCCc-------CCCeEEEEecCC-----CeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVAC-DYTK-------RKHVLRLSSPSS-----NTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~-~~~k-------rk~vf~l~~~~~-----g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      -.|.|.||++.... +..+       +++.|.|...+.     +..|.|+|++.+||++|+.+|+.++
T Consensus        50 gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           50 MSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             EEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            56889999998643 3332       788999988832     3699999999999999999999874

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=97.98  E-value=1.4e-05  Score=61.41  Aligned_cols=55  Identities=15%  Similarity=0.217  Sum_probs=47.1

Q ss_pred             cccccCCceeeecc--cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVAC--DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~--~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+....  +..+++++|.|.+. ++..|+|+|++++|+..|+.+|+.++.
T Consensus        53 g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~~  109 (123)
T 1upq_A           53 GSVLLPSYNIRPDGPGAPRGRRFTFTAEHP-GMRTYVLAADTLEDLRGWLRALGRASR  109 (123)
T ss_dssp             EEEEGGGCEEEECCSSCTTSSSSEEEEECT-TSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             eEEECCCCEEEECCCCccCCCcEEEEEECC-CCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence            35789998888764  34668999999988 779999999999999999999999764

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=97.97  E-value=1.1e-05  Score=64.42  Aligned_cols=56  Identities=13%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             cccccCCceeeeccc---CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACD---YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~---~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.++.+..+.+   ..+++|+|+|.+. ++..|+|+|+++.++..|+.+|+.++..
T Consensus        62 g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~-~~r~~~l~a~s~~e~~~Wi~al~~~i~~  120 (148)
T 1u5f_A           62 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAP-DKRIYQFTAASPKDAEEWVQQLKFILQD  120 (148)
T ss_dssp             EEEECTTCEEEECTTSCSSTTGGGEEEEECT-TSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred             eEEEcCCcEEEECCCcccCCCCccEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            458999998886543   5677899999998 7799999999999999999999998643

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=97.96  E-value=9.7e-06  Score=61.33  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=36.0

Q ss_pred             ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          19 CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        19 ~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+..+++|+|.|.+. ++..|+|+|++++|+..|+.+|+.+.
T Consensus        70 ~~~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           70 PDGKSKDCMLQIVCR-DGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             STTCCGGGEEEEEET-TSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCcEEEEEec-CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            345566899999987 78999999999999999999999864

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.94  E-value=2.1e-05  Score=59.73  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             cccccCCceeeec-c-cCCcCCCeEEEEecC------CCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVA-C-DYTKRKHVLRLSSPS------SNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a-~-~~~krk~vf~l~~~~------~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.+|.+... . +..+++|+|+|.+.+      ++..|+|+|+++.|+.+|+.+|+.++.
T Consensus        49 g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           49 GCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             EEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            4688999887633 2 356679999999831      578999999999999999999999874

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=97.92  E-value=2e-05  Score=60.87  Aligned_cols=55  Identities=16%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.+|.+-...+..+++|+|.|.+.  +..|+|+|++++|+.+|+.+|+.++..
T Consensus        59 g~i~L~~~~~v~~~~~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           59 RILDLTECSAVQFDYSQERVNCFCLVFP--FRTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             EEEEGGGCCEEEEECSSSSSSEEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             eEEEccceEEEEecccCCCCCEEEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            4688988885444556788999999976  789999999999999999999988753

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.92  E-value=1.1e-05  Score=62.53  Aligned_cols=54  Identities=17%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             cccccCCceeeecccC-----Cc---CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDY-----TK---RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~-----~k---rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.+|.+....+.     .+   ++++|+|.+. ++..|+|+|++++|+.+|+.+|+.++
T Consensus        62 g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~-~~r~~~l~a~s~~e~~~Wi~al~~~~  123 (129)
T 1x1g_A           62 GGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITK-DDTHYYIQASSKAERAEWIEAIKKLT  123 (129)
T ss_dssp             CCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCT-TCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             eEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            4688998877644332     12   7899999998 77889999999999999999999876

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=97.90  E-value=2e-05  Score=58.67  Aligned_cols=53  Identities=13%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|+|.+|.+....+   .++.|.|.+. ++..|.|+|++++|+..|+.+|+.+.+
T Consensus        41 ~g~i~L~~~~v~~~~~---~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~~   93 (103)
T 3rcp_A           41 KGSIKMAVCEIKVHSA---DNTRMELIIP-GEQHFYMKAVNAAERQRWLVALGSSKA   93 (103)
T ss_dssp             SCEEEGGGCEEECCTT---CSSEEEEEET-TTEEEEEECSSHHHHHHHHHHHHTTSC
T ss_pred             ccEEEeeeeEEEEcCC---CCceEEEEeC-CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4568898888876433   5889999987 789999999999999999999998753

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=97.89  E-value=1.1e-05  Score=74.82  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.+|.+..+.+ .+|+|+|+|.+. +| ..|+|||+++.||.+||.+|+.++.
T Consensus       321 ~~i~l~~~~v~~~~~-~~r~~~F~i~t~-~~~~~~~l~A~s~~e~~~Wi~ai~~~~~  375 (385)
T 2q13_A          321 LAMDIDNCSVMAVDC-EDRRYCFQITSF-DGKKSSILQAESKKDHEEWICTINNISK  375 (385)
T ss_dssp             EEEECTTCEEEEECC-TTCSSEEEEECT-TSCBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred             ceEEccceEEEeccc-cCCCceEEEEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            468999999876644 688999999998 66 8999999999999999999998763

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.89  E-value=2.4e-05  Score=61.48  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCC-----------------------eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSN-----------------------TELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g-----------------------~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      -.|+|.+|.+.. .+..+++++|+|.+. +.                       ..|.|+|++++|+++||.+|+.++.
T Consensus        48 G~I~L~~~~v~~-~~~~~~~~~F~i~~~-~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A           48 GTVLLNACEIIE-RPSKKDGFCFKLFHP-LEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             EEEECSSCEECC-CCTTTSSCEEEEECT-TCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCEEEE-CCCCCCCeEEEEEcC-CccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            468899988743 234466799999876 32                       2399999999999999999999864

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=97.89  E-value=2.9e-05  Score=59.78  Aligned_cols=54  Identities=11%  Similarity=0.247  Sum_probs=45.1

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCC---------------------eeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSN---------------------TELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g---------------------~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .|+|.+|.+.... ..+++++|+|.+. ++                     ..|+|+|++++|+.+|+.+|+.++..
T Consensus        47 ~i~L~~~~v~~~~-~~~~~~~f~i~~~-~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           47 IIPLENLSIREVL-DPRKPNCFELYNP-SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             EEECTTCEEEEEC-CSSCSSEEEEECS-SSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEECCceEEEEcc-CCCCCceEEEecC-CccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            5899999876543 4588999999987 43                     48999999999999999999988754

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=4.1e-05  Score=58.73  Aligned_cols=54  Identities=17%  Similarity=0.374  Sum_probs=45.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..|+|.++.+...  ..+++++|.|.+.  +..|+|+|++++|+..|+.+|+.+....
T Consensus        53 g~I~L~~~~~~~~--~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~al~~~~~~~  106 (119)
T 2dhk_A           53 DSIDLSSAVFDCK--ADAEEGIFEIKTP--SRVITLKAATKQAMLYWLQQLQMKRWEF  106 (119)
T ss_dssp             EEEEGGGCEEEEC--TTGGGCEEEEECS--SCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cEEECCCCEEEec--CCCCCCEEEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            3588888877653  4567899999986  7899999999999999999999877543

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.76  E-value=5.7e-05  Score=60.72  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             cccccCCceeeecc-cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~-~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+-... ...+++|+|.|.+.  +..|+|+|++.+||.+|+.+|+.++.
T Consensus        59 g~I~L~~~~~~~~~~~~~~~~~~F~I~t~--~r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           59 DKLDIVDLTCLTEQNSTEKNCAKFTLVLP--KEEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             EECCCSSCCEEEECCCTTSCCCEEEEECS--SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cEEECCCceEEeeccCCCCcCcEEEEEcC--CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            46788887655322 22446799999987  57899999999999999999998763

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=97.73  E-value=3.7e-05  Score=59.07  Aligned_cols=54  Identities=19%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             ccccCCceee-ec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVE-VA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~-~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .|+|.++..- ..  .+..+++|+|.|.+.  +..|+|+|++++|+.+|+.+|+.++..
T Consensus        56 ~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~W~~al~~~i~~  112 (125)
T 1eaz_A           56 VIPLKEVHKVQECKQSDIMMRDNLFEIVTT--SRTFYVQADSPEEMHSWIKAVSGAIVA  112 (125)
T ss_dssp             EEEGGGCCEEEECTTHHHHTCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEcccceEEeeccccccCCcCCEEEEEeC--CcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            5778877532 22  245688999999976  789999999999999999999998754

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=97.70  E-value=6.4e-05  Score=63.95  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             CcccccCCceeeecc---cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~---~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|+|.++.+....   ...+|+|+|+|.+. ++..|+|+|+++.++..|+.+|+.++.
T Consensus       150 ~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~-~~r~~~l~A~s~~e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          150 KGEFAIDGYDVRMNNTLRKDGKKDCCFEICAP-DKRIYQFTAASPKDAEEWVQQLKFILQ  208 (211)
T ss_dssp             SEEEECTTCEEEECGGGCSSTTGGGEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCcEEEEcCCccccCCCCCEEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            346889999987653   35677899999998 789999999999999999999998764

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=97.70  E-value=7.8e-05  Score=58.03  Aligned_cols=57  Identities=21%  Similarity=0.386  Sum_probs=43.7

Q ss_pred             cccccCCce---eeecc-cCCcCCCeEEEEecC-C--------------C---eeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNC---VEVAC-DYTKRKHVLRLSSPS-S--------------N---TELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~---~~~a~-~~~krk~vf~l~~~~-~--------------g---~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.+|.   ++.+. +..+|+|+|+|.+.. +              |   ..|+|+|++++|+..|+.+|+.++..
T Consensus        51 g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           51 GRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             EEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEhhhCccccccccchhhccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            368899988   44443 346899999998720 1              1   36999999999999999999987643

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=8.7e-05  Score=56.38  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..+++.+|.+...   ..++++|+|.+.  +..|+|+|++++|+.+|+.+|+.++..
T Consensus        51 ~~i~l~~~~v~~~---~~~~~~F~I~~~--~r~~~l~a~s~~e~~~Wi~al~~~~~~  102 (114)
T 2da0_A           51 AKLNLLTCQVKPN---AEDKKSFDLISH--NRTYHFQAEDEQDYVAWISVLTNSKEE  102 (114)
T ss_dssp             EEEETTTSEEEEC---SSSSSCEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeeeeEEEEC---CCCCCEEEEEcC--CcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            3466777766632   347899999975  789999999999999999999987654

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.68  E-value=4.8e-05  Score=57.69  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=42.3

Q ss_pred             cccccCCceeeecc-------cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVAC-------DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~-------~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+-...       +..+++++|.|.+.  +..|+|+|++++|+.+|+.+|+.++.
T Consensus        51 g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           51 GVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT--RRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             CEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES--SCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             eEEEccCcEEEeecCccccccccCCCCeEEEEECC--CceEEEECCCHHHHHHHHHHHHHHhc
Confidence            35778877654321       23567799999775  78999999999999999999998753

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=97.67  E-value=5.6e-05  Score=55.22  Aligned_cols=49  Identities=16%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ..++|.+|.+...   ..+++.|.+.+.  +..|.|+|+|++|+.+|+.+|+++
T Consensus        44 ~~i~l~~~~~~~~---~~~~~~F~i~~~--~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           44 GSICLSKAVITPH---DFDECRFDISVN--DSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             EEEETTTCEEEEC---SSCSSEEEEEET--TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             eeEecceeeeecC---cccceeEEEEeC--CeEEEEECCCHHHHHHHHHHHHhh
Confidence            4578888776653   456899999986  789999999999999999999875

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.66  E-value=0.0001  Score=57.47  Aligned_cols=53  Identities=17%  Similarity=0.347  Sum_probs=41.3

Q ss_pred             cccccCC-ceeeecc--cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGH-NCVEVAC--DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~-~~~~~a~--~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      -.|+|.+ +.+..+.  +..+++++|.+.+.  ...|+|+|++++||.+||.+|+.++
T Consensus        64 G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~--~r~y~l~A~s~~e~~~Wi~al~~a~  119 (126)
T 1v5p_A           64 GSLQLTYISKVSIATPKQKPKTPFCFVINAL--SQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             EEEETTTCCEEEECCTTTSCSCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCccEEecCCcccCCCCCEEEEEECC--CEEEEEECCCHHHHHHHHHHHHHHH
Confidence            3567777 4555432  34577899988765  6789999999999999999999875

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=97.65  E-value=7.8e-05  Score=69.58  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=46.3

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...++|.+|.+..+. ..+|+|+|.|.+. ++ ..|+|||+++.||.+||.+|++++.
T Consensus       343 ~~~~~l~~~~v~~~~-~~~r~~cF~i~~~-~~~~~~~l~A~s~~e~~~Wi~ai~~a~~  398 (407)
T 4h8s_A          343 GLIQDLDNCSVMAVD-CEDRRYCFQITTP-NGKSGIILQAESRKENEEWICAINNISR  398 (407)
T ss_dssp             CCCBCSSCCEEEEEC-CTTCSSEEEEECT-TSSCCEEEECSSSHHHHHHHHHHHHHHS
T ss_pred             CeEEECCceEEEECC-CCCCCceEEEEec-CCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            346789999887654 4568899999998 54 6799999999999999999998764

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=97.60  E-value=6.5e-05  Score=57.90  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=41.2

Q ss_pred             cccCCceee---ecccCCcCCCeEEEEec--CCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           8 IDIGHNCVE---VACDYTKRKHVLRLSSP--SSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         8 ~~l~~~~~~---~a~~~~krk~vf~l~~~--~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      |+|.++.+.   +.....+++|+|+|.+.  ..+..|+|+|++++|+.+|+.+|+.++..
T Consensus        52 i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~  111 (125)
T 1unq_A           52 APLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG  111 (125)
T ss_dssp             SCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            566655432   12234578999999963  14678999999999999999999987754

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.51  E-value=0.00028  Score=53.38  Aligned_cols=52  Identities=15%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             cccccCCce-eeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhcc
Q psy5716           6 ERIDIGHNC-VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS   64 (294)
Q Consensus         6 ~~~~l~~~~-~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~   64 (294)
                      ..|+|.++. ++.. +    +|+|.|.+.  +..|+|+|++++|+.+|+.+|+.++...+
T Consensus        50 g~i~l~~~~~v~~~-~----~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~~l~~~~~~~~  102 (115)
T 2cod_A           50 GIIPLSAISTVRVQ-G----DNKFEVVTT--QRTFVFRVEKEEERNDWISILLNALKSQS  102 (115)
T ss_dssp             CEEETTTEEEEEEE-T----TTEEEEEES--SCCEEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             CEEECCcceEEEeC-C----CCEEEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            357777764 2222 1    799999965  78999999999999999999999875443

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=97.25  E-value=0.00044  Score=53.39  Aligned_cols=52  Identities=13%  Similarity=0.295  Sum_probs=41.6

Q ss_pred             cccCCceee-ecccCCcCCCeEEEEecCCCe-------eEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVE-VACDYTKRKHVLRLSSPSSNT-------ELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~-~a~~~~krk~vf~l~~~~~g~-------e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      |.|.|..+. +.....+|||.|.|-.. +|.       .|.|.|++.+||.+|+++|.++.
T Consensus        57 IpL~~~~vr~v~~~~~~rk~~F~l~~~-d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           57 LSVDNLKLRDVEKGFMSSKHIFALFNT-EQRNVYKDYRQLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             EECTTEEEEECCSCSSSSCEEEEEEET-TSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             EECCCceEeccCCCCCCCceEEEEECC-CCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence            566666655 33444579999999998 665       89999999999999999997754

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=97.24  E-value=0.00038  Score=61.18  Aligned_cols=55  Identities=16%  Similarity=0.249  Sum_probs=43.6

Q ss_pred             CcccccCCce-eeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           5 CERIDIGHNC-VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         5 ~~~~~l~~~~-~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .-.|+|.+|. +.... ..+++|+|.|.+.  +..|+|+|++++|+.+|+.+|+.+...
T Consensus        58 ~g~I~L~~~~~V~~~~-~~~~~~~F~I~t~--~rty~l~A~se~e~~~Wi~aL~~~~~~  113 (264)
T 1qqg_A           58 KRSIPLESCFNINKRA-DSKNKHLVALYTR--DEHFAIAADSEAEQDSWYQALLQLHNR  113 (264)
T ss_dssp             SEEEEGGGEEEEEEEC-CSSCSSEEEEEES--SCEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred             ceEEEeeceEEEEecc-CCCCCcEEEEEEC--CEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            3468888876 33332 3788999999987  689999999999999999999987644

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=97.22  E-value=0.00044  Score=63.20  Aligned_cols=54  Identities=11%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCC--------------------CeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSS--------------------NTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~--------------------g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .|+|.+|.+... +..+|+++|+|.+.++                    +..|+|+|++++|+.+|+.+|+.++.
T Consensus       255 ~I~L~~~~v~~~-~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          255 IIPLENLSIREV-EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             EEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCeEEEEc-cCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            689999987654 4578999999998721                    36899999999999999999998764

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.20  E-value=0.00047  Score=59.18  Aligned_cols=51  Identities=12%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .|+|.+|.+-.  +..+++|+|+|.+.  +..|+|+|++++|+.+|+.+|+.++.
T Consensus       105 ~I~L~~~~~v~--~~~~k~~~F~I~t~--~r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          105 TVEVRSAKEII--DNTNKENGIDIIMA--DRTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             EEEGGGCSEEE--EETTTTSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCCEEec--cCCCCCcEEEEEcC--CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            57888876532  34478999999875  78999999999999999999999874

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=0.00067  Score=53.23  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=44.5

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecC-CC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPS-SN-TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~-~g-~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .|+|+||.+....+..++|+.|++..++ +| .+|.|.++++.++.+|+++++.++
T Consensus        56 ~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs  111 (137)
T 2ys3_A           56 QLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS  111 (137)
T ss_dssp             CBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence            4799999977665557888888887651 34 889999999999999999999875

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.19  E-value=0.00066  Score=55.16  Aligned_cols=53  Identities=15%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             ccccCCcee-eeccc-----CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCV-EVACD-----YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~-~~a~~-----~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .|+|.++.. +...+     ..+++++|+|.+.  +..|.|+|++++|+.+||.+|++++.
T Consensus        63 ~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~--~rt~~l~A~s~~e~~~Wi~aL~~~i~  121 (164)
T 2lul_A           63 FIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHD--ANTLYIFAPSPQSRDLWVKKLKEEIK  121 (164)
T ss_dssp             EEEGGGCCEEEECCCCSSSCCSSSCSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeeEEEEeccccccCcccccceeEEEecC--CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            577877643 23221     3467899999987  57899999999999999999999874

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.10  E-value=0.00071  Score=55.32  Aligned_cols=34  Identities=12%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          26 HVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        26 ~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      |+|+|.+. + ..|+|+|++++|+.+||.+|+.++.
T Consensus        99 ~~F~I~t~-~-rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           99 YPFQVVYD-E-GPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             EEEEEEET-T-CCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEeC-C-ceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            89999987 4 6799999999999999999999874

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.83  E-value=0.0013  Score=51.06  Aligned_cols=41  Identities=20%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          20 DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        20 ~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      +...+-|+|-|+.. ++.||+|.|.|+.+|+.|++.|+.-..
T Consensus        90 EmPD~~nTFVlK~~-n~~eyi~ea~d~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A           90 EMPEKDNTFVLKVE-NGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             SSCCCTTEECCBCT-TSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCccceEEEEec-CCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence            44668999999999 899999999999999999999988653

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=96.36  E-value=0.011  Score=44.87  Aligned_cols=52  Identities=15%  Similarity=0.188  Sum_probs=39.7

Q ss_pred             cccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         8 ~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ++|.+..+.--.|-..-+|.|+|.+.  ..+|+++|++..|..+|+.+|+.+..
T Consensus        56 ~~L~~~~v~d~~d~~~~~n~f~i~~~--~~s~~~~aes~~eK~~Wl~~~~~a~~  107 (113)
T 1zc3_B           56 YPLDRLAVVNVKDNPPMKDMFKLLMF--PESRIFQAENAKIKREWLEVLEETKR  107 (113)
T ss_dssp             EETTTCEEEEECCBTTBSSEEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcccCEEEECCCCcccceEEEEEeC--CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            45555444432333356999999986  57899999999999999999998753

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=96.31  E-value=0.0078  Score=46.00  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             CcCCCeEEEEecC----CCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          22 TKRKHVLRLSSPS----SNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        22 ~krk~vf~l~~~~----~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ....+.|+|...+    .+..++|+|+|++|+..|+.+|+..+
T Consensus        72 ~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i  114 (117)
T 2rov_A           72 KEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKI  114 (117)
T ss_dssp             TTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            3347899998741    35799999999999999999998765

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=96.26  E-value=0.0051  Score=56.93  Aligned_cols=37  Identities=14%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ++++|+|.+.  +..|.|+|+++.|+.+|+.+|+.+++.
T Consensus       337 ~~~~F~I~t~--~rty~l~A~s~~e~~~Wi~aL~~~i~~  373 (386)
T 3lju_X          337 WPHGITIVTP--DRKFLFACETESDQREWVAAFQKAVDR  373 (386)
T ss_dssp             SCEEEEEECS--SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            3799999987  589999999999999999999998753

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.24  E-value=0.0083  Score=46.91  Aligned_cols=55  Identities=9%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      -+.|+|..+....|-...+|.|.|... ....+++.|.+.+|++.|+.+|+..+..
T Consensus        73 klPL~g~~V~~~ed~~~~~~aFeI~g~-~~~~i~v~~~s~eE~~~Wl~~L~~~i~~  127 (132)
T 1v61_A           73 KIPIAGMVVNRLDEIEGSDCMFEITGS-TVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             EECTTTCBCSTTCSSSSSCCCEEEECS-SSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             EEecceeEEEeccccccCccEEEEecC-CCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            356777777777666789999999988 7788999999999999999999987643

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=95.75  E-value=0.0097  Score=52.23  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             cccCCceeeeccc-----CCcCCCeEEEEecCCC-----eeEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACD-----YTKRKHVLRLSSPSSN-----TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~-----~~krk~vf~l~~~~~g-----~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      +++.++.+....+     ...++|+|.|.+. ++     ..|+|+|+|+.++..|+.+|+.+.
T Consensus       214 ~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          214 IQFENVNIYYGIQCKMKYKAPTDHCFVLKHP-QIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             EEGGGCEEEEECSHHHHHCCSSSCEEEEECT-TCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEecCccccccCCCCCeEEEEEcC-CCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4455555554332     3457899999986 32     359999999999999999998653

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.27  E-value=0.03  Score=43.07  Aligned_cols=52  Identities=13%  Similarity=0.164  Sum_probs=39.3

Q ss_pred             cccccCCceeeecccCC----cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYT----KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~----krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|.|..|..-...+-.    |..++|.|.|.  ...|+|.|++ .++.+|+.+|.+.+
T Consensus        65 rVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~--er~~~laAe~-~E~~~Wi~~ic~~a  120 (127)
T 2d9w_A           65 KVIRLSDCLRVAEAGGEASSPRDTSAFFLETK--ERLYLLAAPA-AERGDWVQAICLLA  120 (127)
T ss_dssp             EEECGGGEEEEEECCSCSSSCSSCEEEEEEES--SCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred             eEEEhhhCCeEecccCccCCCCcceEEEEEeC--CcEEEEEeCc-HHHHHHHHHHHHHh
Confidence            45677666554322222    67799999998  4789999996 59999999999875

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=94.87  E-value=0.017  Score=53.41  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecC--CCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPS--SNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~--~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.+....+...++|.|+|....  .+..|.|+|+|..+|.+|+.+|+.+.
T Consensus       189 g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          189 AVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             EEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEeeccEEEEcccccCCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            35778776666655556789999998311  35789999999999999999998764

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=94.86  E-value=0.091  Score=41.26  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             ccccCCceeeec-ccCCcCCCeEEEEecCCC----eeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVA-CDYTKRKHVLRLSSPSSN----TELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a-~~~~krk~vf~l~~~~~g----~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+.|.|..+... .+|  =.|-|+|...++|    ...+|+|.+..|+..|+.+|++++++
T Consensus        65 ~~~L~gm~V~~~e~e~--~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e  123 (140)
T 3qwm_A           65 SFSLYGMQVLLFENQY--YPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAE  123 (140)
T ss_dssp             EECCTTEEEEEECCSS--CTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EeeecceEEEcccCCC--CceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            456777766643 233  4899999987557    66999999999999999999998765

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=94.08  E-value=0.091  Score=41.94  Aligned_cols=54  Identities=17%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecC-CC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPS-SN-TELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~-~g-~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .|+|+||++...-.....|..++|...+ +| .|+.|.++++.+...|+++.+-++
T Consensus        73 ~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLAs  128 (165)
T 4bbk_A           73 KLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILAS  128 (165)
T ss_dssp             EEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhcc
Confidence            4699998877655667778778873331 34 599999999999999999998865

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=93.86  E-value=0.11  Score=46.99  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .++.|.+..+.-..|-..-+|.|+|... ++..|.|+|.+.++...|+.+|+.+..
T Consensus       295 ~~i~l~~~~v~~~~d~~~~~~~F~i~~~-~~~~~~l~a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          295 EKFFMRKVQINDKDDTNEYKHAFEIILK-DENSVIFSAKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             EEEESCSCEEEECCCSSSCCSEEEECCT-TSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEeccceEEEeCCcccccCccEEEecC-CCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            4567777766654444456899999987 678999999999999999999998753

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=93.63  E-value=0.12  Score=42.28  Aligned_cols=53  Identities=15%  Similarity=0.360  Sum_probs=41.2

Q ss_pred             cccCCceeeeccc-CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACD-YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~-~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      |.|.-|-+....- -.+|.|.|+|+..++-...+|++.|..+...|+++|+..+
T Consensus       123 IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni  176 (178)
T 2adz_A          123 VSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  176 (178)
T ss_dssp             EETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence            5566666664321 2248999999999444789999999999999999999875

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=92.91  E-value=0.18  Score=40.70  Aligned_cols=54  Identities=17%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEe--cCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSS--PSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~--~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .|.|+||.+...-+....|..+++-.  ..+-.||.+.++++.++..|+++.+-++
T Consensus        94 ~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLAs  149 (173)
T 4f7h_A           94 QMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLAS  149 (173)
T ss_dssp             EEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhhc
Confidence            36999999997766777776666644  3123789999999999999999998765

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=92.32  E-value=0.22  Score=43.38  Aligned_cols=52  Identities=15%  Similarity=0.372  Sum_probs=39.6

Q ss_pred             cccCCceeeecccC-CcCCCeEEEEecCCCee-EEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACDY-TKRKHVLRLSSPSSNTE-LLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~~-~krk~vf~l~~~~~g~e-~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      +.|.-|-+....-. .+|.|.|.|... ||.. +.+++.|..++..|+.+|+.++
T Consensus       208 ipL~m~~~tR~~~~~d~~~~~fev~s~-dG~~t~~l~~~d~~~a~~W~~ai~~~i  261 (263)
T 1z87_A          208 VSLKMAYVSRRCTPTDPEPRYLEICAA-DGQDAVFLRAKDEASARSWAGAIQAQI  261 (263)
T ss_dssp             EESSSEEEEEECCSSCSSSCEEEEEET-TTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcceeeeeeeccccCCCCceEEEECC-CCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence            44555555543222 238899999999 7754 8999999999999999999875

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=92.08  E-value=0.31  Score=43.78  Aligned_cols=55  Identities=24%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             cccccCCceeeecccC---------------CcCCCeEEEEec--CCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDY---------------TKRKHVLRLSSP--SSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~---------------~krk~vf~l~~~--~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+|.|.+..++-..|-               ..-+|.|+|...  ..+..|.|+|.+..+...|+.+|+.++
T Consensus       274 ~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          274 QPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             CCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCcchhhceeeecCCCccccCccccccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            3566666666644332               134799999864  136789999999999999999998864

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=91.68  E-value=0.3  Score=45.00  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             ccccCCceeeecccCC------cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVACDYT------KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~------krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      +|+|.+..+.-..|-.      .-+|.|+|.....+..|+|+|.+..+...|+.+|+.+...
T Consensus       303 ~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~  364 (402)
T 2dfk_A          303 RIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKM  364 (402)
T ss_dssp             EEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            4566666555322211      2378999998734578999999999999999999986543

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=90.94  E-value=0.27  Score=45.64  Aligned_cols=52  Identities=15%  Similarity=0.195  Sum_probs=36.0

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .+.|.+..+....+ ...+|.|.+.+.  +..|.|+|.+.++...|+.+|+.++.
T Consensus       286 ~i~L~~l~v~~~~~-~~~~~~f~i~~~--~~~~~l~a~s~~ek~~W~~~i~~ai~  337 (434)
T 3mpx_A          286 TLAVANMKVSRPVM-EKVPYALKIETS--ESCLMLSASSCAERDEWYGCLSRALP  337 (434)
T ss_dssp             EEEC-----CCCCC-TTSCSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHC--
T ss_pred             EEEcCCcEEEecCC-CCCCeeEEEecC--CeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            45666666643222 357899999876  56899999999999999999999764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=90.67  E-value=0.49  Score=44.32  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=41.6

Q ss_pred             ccccCCceeeecccCC------cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVACDYT------KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~------krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      +|.|.+..+.-..+-.      .-+|.|+|.....+..|+|+|.+..+...|+.+|+.+...
T Consensus       380 ~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~  441 (466)
T 2pz1_A          380 RLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQ  441 (466)
T ss_dssp             EEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             eeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            5667676665322211      2378999998734678999999999999999999987643

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=88.73  E-value=0.45  Score=41.25  Aligned_cols=53  Identities=19%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             cccCCceeeecccCCcC-----CCeEEEEecCC----CeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACDYTKR-----KHVLRLSSPSS----NTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~~~kr-----k~vf~l~~~~~----g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ++|.+..+-.+.+..|+     ++.|.|+....    ...|.|.|+|+.++..|+.+|+.+.
T Consensus       178 ~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          178 ADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             ECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            47777777766655442     68999996511    1259999999999999999998764

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=88.20  E-value=0.67  Score=48.19  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .++.|.+..+.-..+-..-+|.|++... +|..|+|+|.+.++...|+.+|+....
T Consensus       492 ~~i~L~~l~V~~~~d~~~~~~~F~I~~~-~~~~~~L~A~S~eeK~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          492 EKFFMRKVQINDKDDTNEYKHAFEIILK-DENSVIFSAKSAEEKNNWMAALISLQY  546 (1049)
T ss_dssp             CEECCSSCCCCCCCCSSSCCSEEEECCT-TSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCceEEEECCCCccccceEEEEcC-CCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            3556666666544455567899999988 778999999999999999999987653

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=87.63  E-value=0.55  Score=41.24  Aligned_cols=53  Identities=25%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             cccCCceeeecccCCc-----CCCeEEEEecC----CCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           8 IDIGHNCVEVACDYTK-----RKHVLRLSSPS----SNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         8 ~~l~~~~~~~a~~~~k-----rk~vf~l~~~~----~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ++|.++.+....++.|     +++.|-|+...    +...|+|.|+|+.++..|+.+|+.+.
T Consensus       204 ~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          204 LQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             ECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence            3677777776554433     38899999641    23469999999999999999998754

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=87.60  E-value=0.89  Score=41.71  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=39.9

Q ss_pred             ccccCCceeeecc----cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVAC----DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~----~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      +|.|.+..+.-..    +..+-+|.|.|....++..|.|+|.+.++...|+.+|+.++..
T Consensus       277 ~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~  336 (406)
T 2vrw_B          277 SVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN  336 (406)
T ss_dssp             EEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            4556665554221    1234579999987534568999999999999999999987754

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=87.00  E-value=1.2  Score=40.02  Aligned_cols=39  Identities=10%  Similarity=0.203  Sum_probs=32.7

Q ss_pred             CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      -++.|.|........|.|+|.+.++...|+.+|+.++..
T Consensus       288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~  326 (353)
T 1kz7_A          288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTS  326 (353)
T ss_dssp             BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            378899987633578999999999999999999987644

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=86.34  E-value=0.14  Score=48.53  Aligned_cols=55  Identities=15%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+|.|.+..+....|-...+|.|++...  ...|.|||.+..+...|+..|++++..
T Consensus       309 ~~i~l~~~~v~~~~d~~~~~~~F~i~~~--~~~~~l~a~s~~ek~~W~~~i~~ai~~  363 (510)
T 3jzy_A          309 TPIFLNEVLVKLPTDPSSDEPVFHISHI--DRVYTLRTDNINERTAWVQKIKAASEQ  363 (510)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CceehhheEEeccCCCCccccceeeecc--ceeEEeccCCHHHHHHHHHHHHHHHHH
Confidence            4567777777766555667899999887  468999999999999999999987654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=86.14  E-value=0.8  Score=42.30  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             ccCCcCCCeEEEEecCCCeeE---EEecCChhHHHHHHHHHHHHHh
Q psy5716          19 CDYTKRKHVLRLSSPSSNTEL---LLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        19 ~~~~krk~vf~l~~~~~g~e~---l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ....+|+|.|.+.+. ++..+   .|++++.+++.+|+.+|+.++.
T Consensus        64 ~~~~~~~~~f~I~~~-~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~  108 (446)
T 4ejn_A           64 KTERPRPNTFIIRCL-QWTTVIERTFHVETPEEREEWTTAIQTVAD  108 (446)
T ss_dssp             EECSSSTTEEEEEEE-ETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCceeEEEcC-CCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence            345678999999987 65555   7999999999999999998753

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=85.78  E-value=1.6  Score=35.74  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             cccccCCceee-ecccCCcCCCeEEEEecC-CCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVE-VACDYTKRKHVLRLSSPS-SNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~-~a~~~~krk~vf~l~~~~-~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      +.|.|.++.+. +|.|   .+..|-+.+.. +..-|-|+|.+..+...|+.+|+.++...
T Consensus       118 pvi~L~~~~vre~a~d---~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~  174 (185)
T 2lg1_A          118 TVISLKKLIVREVAHE---EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL  174 (185)
T ss_dssp             SEEESSSCEEECCSSC---SSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CeEeecceEEeccCCC---CCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence            56788888886 4543   33444444321 24579999999999999999999877543

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=85.71  E-value=1.4  Score=38.82  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCCeEEEEec---CCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          24 RKHVLRLSSP---SSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        24 rk~vf~l~~~---~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      -++.|.+...   +.+..|+|+|.+..+...|+.+|+.++.
T Consensus       268 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~  308 (311)
T 1nty_A          268 DPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQ  308 (311)
T ss_dssp             CTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHh
Confidence            3678999872   1356799999999999999999998764

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=84.21  E-value=2  Score=38.71  Aligned_cols=53  Identities=11%  Similarity=0.104  Sum_probs=37.0

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCC---CeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSS---NTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~---g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|.|.+..+.-.   ..-++.|.+...++   ...|.|+|.+..+...|+..|+.++.
T Consensus       311 ~~i~l~~~~v~~~---~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~  366 (368)
T 1xcg_A          311 PVLKLNAVLIRSV---ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  366 (368)
T ss_dssp             SEEEGGGEEEEEC---SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CceEccceeeecc---cCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            4566666655421   12256777765411   26899999999999999999998763

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=83.63  E-value=1.2  Score=39.99  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCCeEEEEecC---CCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          24 RKHVLRLSSPS---SNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        24 rk~vf~l~~~~---~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      -++.|.|...+   ....|.|+|.+..+...|+.+|+.+...
T Consensus       278 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~  319 (354)
T 2rgn_B          278 DPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES  319 (354)
T ss_dssp             CTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            36889998741   1378999999999999999999987643

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=82.72  E-value=1.8  Score=34.27  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          23 KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        23 krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      |..+.|.|.+.  +..|.|.+. ..+.++|+++|+++..
T Consensus       104 k~~~~F~I~Tp--~RtY~~~d~-~~~AqeWv~aI~~~~~  139 (151)
T 1w1g_A          104 KNFKTFFVHTP--NRTYYLMDP-SGNAHKWCRKIQEVWR  139 (151)
T ss_dssp             SSSSEEEEEET--TEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECC--CceEEEEcC-ccCHHHHHHHHHHHHH
Confidence            33559999998  599999997 8899999999998764

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=82.39  E-value=2.4  Score=38.82  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=38.8

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecC-CC--eeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPS-SN--TELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~-~g--~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      .+|.|.+..+.-   ...-++.|.+.... .|  ..|.|+|.+.++...|++.|+.+++..
T Consensus       353 ~~i~l~~~~v~~---~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~  410 (418)
T 3t06_A          353 PVLKLNAVLIRS---VATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA  410 (418)
T ss_dssp             SEEEGGGEEEEE---CSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred             Cceechhceecc---ccccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence            456676666651   22334567776641 12  689999999999999999999987543

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=81.93  E-value=2.8  Score=37.82  Aligned_cols=56  Identities=7%  Similarity=0.016  Sum_probs=36.5

Q ss_pred             ccccCCceeeeccc-CCcCCCeEEEEecC------CCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVACD-YTKRKHVLRLSSPS------SNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~~-~~krk~vf~l~~~~------~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+.|.+..+.-..+ -......|.+....      ....|.|+|.+.++...|+.+|+.++..
T Consensus       305 ~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~  367 (377)
T 1foe_A          305 MIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRD  367 (377)
T ss_dssp             EEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             eccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhH
Confidence            35666665543222 22233467775210      2467999999999999999999987643

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=80.82  E-value=1.9  Score=39.14  Aligned_cols=55  Identities=18%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             cccccCCceeee-cccCCcCCCeEEEEecC-CCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEV-ACDYTKRKHVLRLSSPS-SNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~-a~~~~krk~vf~l~~~~-~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..+.|.++.+.- +.|   .++.|.+.... +...|.|+|.+..+...|+.+|+.++...
T Consensus       315 ~~i~l~~~~v~~~~~d---~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~  371 (385)
T 1txd_A          315 PVIKLSTVLVRQVATD---NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASV  371 (385)
T ss_dssp             SEEEGGGEEEEECCC----CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CceecccccccccccC---CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            456676666553 222   35677776541 24679999999999999999999877543

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=80.41  E-value=2.1  Score=41.30  Aligned_cols=56  Identities=13%  Similarity=0.127  Sum_probs=39.5

Q ss_pred             ccccCCceeeecc----cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVAC----DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a~----~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+.|.+..+.-..    +-.+-+|.|+|....+...|.|+|.+..+...|+.+|+.++..
T Consensus       449 ~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~  508 (587)
T 3ky9_A          449 FVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN  508 (587)
T ss_dssp             EEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             eechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence            4556666665322    2234578999999833378999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	1e-31
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	3e-31
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	5e-31
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	5e-30
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	2e-05
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	0.001

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 1e-31
 Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 8/165 (4%)

Query: 136 SNIGVPL--QHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS 189
            N   P+    C+       L    L+ RV G T  +  +  A ++  + + +  +  + 
Sbjct: 14  HNTQRPMVVDICIREIEARGLKSEGLY-RVSGFTEHIEDVKMAFDRDGEKADISANV-YP 71

Query: 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTL 249
           D+N+I+  LK +FR LP  ++T + Y  FI A KI +   R+  + +++  LP  H++TL
Sbjct: 72  DINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETL 131

Query: 250 KYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
           +Y++ HLK+V  N + N M A NL I+FGPTL+R  +D+ +T + 
Sbjct: 132 RYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLH 176

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  113 bits (283), Expect = 3e-31
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 142 LQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQD-PRWSDVNVISS 196
           ++ C+       +    L+ R+ G  + V  L   +     A+  E +     ++  I+S
Sbjct: 11  IKKCIHAVETRGINEQGLY-RIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITS 69

Query: 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHL 256
            LK++ R LP  L+  +    FI+A K+E+  +R++ I  LVH LPE + Q L  ++ HL
Sbjct: 70  ALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHL 129

Query: 257 KRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
            +V DN + N M   NL ++FGPTL+R  ++ +  +
Sbjct: 130 AKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAI 165

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 5e-31
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 133 PPGSNIGVPLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRW 188
           P    I + L+  V+      L    +F R   NT  V  + +  N GL     +    +
Sbjct: 19  PEQEPIPIVLRETVAYLQAHALTTEGIF-RRSANTQVVREVQQKYNMGLPVDFDQ----Y 73

Query: 189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQT 248
           + +++ + +LK+F R LP+ LLT +LYPH +    I++   R+    +++  LPE ++Q 
Sbjct: 74  NALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES-QRVPATLQVLQTLPEENYQV 132

Query: 249 LKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
           L+++   L ++  +S+ NKM   NLA++FGP L+ A D  +   
Sbjct: 133 LRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLK 176

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 5e-30
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 13/166 (7%)

Query: 134 PGSNIGVPLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS 189
           P       L   V       L C  L+ R   + + ++ L + ++          D    
Sbjct: 10  PPDIAPPLLIKLVEAIEKKGLECSTLY-RTQSS-SNLAELRQLLDCDTP----SVDLEMI 63

Query: 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQA-DKIEDPATRMATIKKLVH--ELPEHHF 246
           DV+V++   K +   LP+ ++   +Y   I    +++     +  +KKL+    +P  ++
Sbjct: 64  DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYW 123

Query: 247 QTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
            TL+Y+L+H  ++   S  N + AR L+ +F P L R    +    
Sbjct: 124 LTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNT 169

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 3   GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62
            S     I      +  +  ++ +   L   +   E +L+  D+L    W+ D+Q   + 
Sbjct: 73  VSIPLSAIIEVRTTMPLEMPEKDNTFVLKVEN-GAEYILETIDSLQKHSWVADIQG-CVD 130

Query: 63  QSASE 67
              S 
Sbjct: 131 SGPSS 135

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 10  IGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
           +    ++++   TKRK+V RL++   + E L QA+D   M  WI+ +Q  +         
Sbjct: 60  VNACLIDISYSETKRKNVFRLTTS--DCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGV 117

Query: 70  ISPASGQKNRK 80
            +     +  K
Sbjct: 118 TNRDLISRRIK 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	98.73
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	98.67
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	98.59
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	98.58
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.54
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	98.53
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.29
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	98.26
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.16
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	98.14
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.07
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.01
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.01
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	97.94
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	97.94
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	97.93
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	97.83
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	97.73
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	97.71
d1wi1a_	126	Calcium-dependent activator protein for secretion,	97.62
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	97.5
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	97.35
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	97.33
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	97.33
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.07
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	97.01
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	96.93
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	96.89
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	96.75
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	96.58
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	96.57
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	96.16
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	95.96
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	95.49
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	93.98
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	93.64
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	92.89
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	91.41
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	90.24

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=258.11  Aligned_cols=154  Identities=32%  Similarity=0.537  Sum_probs=134.2

Q ss_pred             Ccccccccccccc-ccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHH
Q psy5716         136 SNIGVPLQHCVSV-NLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSL  197 (294)
Q Consensus       136 ~~fgv~L~~~~~~-~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~l  197 (294)
                      ++||+||+..++. ...+|.                 ||||++|+..++++|++.+|++... .+.......|+|++|++
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~-~~~~~~~~~d~~~va~~   79 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEK-ADISANVYPDINIITGA   79 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTT-SCCCSSSSCCTHHHHHH
T ss_pred             CccCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCc-cccccccccchhHHHHH
Confidence            3677777754433 234554                 9999999999999999999985443 33333445799999999


Q ss_pred             HHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhh
Q psy5716         198 LKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF  277 (294)
Q Consensus       198 LK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf  277 (294)
                      ||+|||+||+||+|.++|+.|+.+.+..+.+.++..++.++.+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus        80 lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f  159 (196)
T d1xa6a1          80 LKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVF  159 (196)
T ss_dssp             HHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHH
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCcc
Q psy5716         278 GPTLVRAGDDNMV  290 (294)
Q Consensus       278 ~P~L~~~~~~~~~  290 (294)
                      ||+|+++++++..
T Consensus       160 ~P~l~~~~~~~~~  172 (196)
T d1xa6a1         160 GPTLMRPPEDSTL  172 (196)
T ss_dssp             TTTSCCCCCSCTT
T ss_pred             ccccccCCCccHH
Confidence            9999999776543

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-35  Score=246.09  Aligned_cols=151  Identities=32%  Similarity=0.568  Sum_probs=133.8

Q ss_pred             CCCCccccccccccccc---cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchH
Q psy5716         133 PPGSNIGVPLQHCVSVN---LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVN  192 (294)
Q Consensus       133 ~~~~~fgv~L~~~~~~~---~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~  192 (294)
                      .++++||++|+.+++..   ..||.                 ||||++|+.+.++++++.+|+|.+.++.    .+.|+|
T Consensus         2 ~~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~----~~~~~~   77 (196)
T d1tx4a_           2 LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD----QYNALH   77 (196)
T ss_dssp             CTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGG----GSSCTH
T ss_pred             CCCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCcccc----ccccHH
Confidence            56889999998765543   33665                 9999999999999999999998775443    236899


Q ss_pred             HHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716         193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN  272 (294)
Q Consensus       193 ~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  272 (294)
                      +||++||+|||+||+||++.+.|+.|+.+....+ ++++..++.++.+||+.|+.+|.+|+.||++|+.|++.|+|++.|
T Consensus        78 ~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~n  156 (196)
T d1tx4a_          78 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN  156 (196)
T ss_dssp             HHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCG-GGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            9999999999999999999999999999887554 558899999999999999999999999999999999999999999


Q ss_pred             hhHhhcccccccCCCC
Q psy5716         273 LAIMFGPTLVRAGDDN  288 (294)
Q Consensus       273 LAivf~P~L~~~~~~~  288 (294)
                      ||+||||+|+++++++
T Consensus       157 La~~f~P~l~~~~~~~  172 (196)
T d1tx4a_         157 LAVVFGPNLLWAKDAA  172 (196)
T ss_dssp             HHHHHHHHHCCCSSHH
T ss_pred             HHHHHhhhhcCCCCcc
Confidence            9999999999987654

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2e-34  Score=243.02  Aligned_cols=153  Identities=30%  Similarity=0.499  Sum_probs=131.4

Q ss_pred             cccc-cccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCc-CccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716         138 IGVP-LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDA-SVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT  212 (294)
Q Consensus       138 fgv~-L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~  212 (294)
                      +|.+ ++.|+.+++..+.   ||||++|+..+++++++.++.+... +.......++|+|++|++||+|||+||+||+|.
T Consensus         6 ~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~   85 (191)
T d1f7ca_           6 IGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMY   85 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCH
T ss_pred             cccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHH
Confidence            3444 5689888865555   9999999999999999999987654 122233445899999999999999999999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716         213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV  290 (294)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~  290 (294)
                      ++|+.|+.+.+..+.++++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|+++++++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~  163 (191)
T d1f7ca_          86 QFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVA  163 (191)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCS
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchhcCCCCcchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998776654

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=241.25  Aligned_cols=149  Identities=21%  Similarity=0.345  Sum_probs=130.6

Q ss_pred             ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716         137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE  213 (294)
Q Consensus       137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~  213 (294)
                      ..+..|..|+.+++..+.   ||||++|+. .++++++.+++|... .+.   ..+|+|++|++||+|||+||+||||.+
T Consensus        13 ~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~-~~~---~~~~~~~va~lLK~flreLp~plip~~   87 (184)
T d1pbwa_          13 IAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPS-VDL---EMIDVHVLADAFKRYLLDLPNPVIPAA   87 (184)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSC-CCG---GGBCHHHHHHHHHHHHHTSSSCSSCHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCCCc-cCc---ccCCHHHHHHHHHHHHHhCCCccccHH
Confidence            456678899998866555   999999985 699999999987543 333   338999999999999999999999999


Q ss_pred             hHHHHHHhh-cCCCHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716         214 LYPHFIQAD-KIEDPATRMATIKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV  290 (294)
Q Consensus       214 ~~~~~~~~~-~~~~~~~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~  290 (294)
                      +|+.|+.+. ...+.+++++.++.++.  +||..|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||+++++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~  167 (184)
T d1pbwa_          88 VYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD  167 (184)
T ss_dssp             HHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchhcCCCCCChh
Confidence            999999865 46778889999999996  699999999999999999999999999999999999999999999877653

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.2e-09  Score=79.48  Aligned_cols=53  Identities=32%  Similarity=0.579  Sum_probs=48.5

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+|+|.+|.+.++.++.+|+|+|.|.+.  +.+|+|+|+++.|+.+|+.+|+.++
T Consensus        56 ~~i~L~~~~v~~~~~~~~r~~~F~i~~~--~~~~~f~A~s~~e~~~Wi~ai~~a~  108 (133)
T d2j59m1          56 QPISVNACLIDISYSETKRKNVFRLTTS--DCECLFQAEDRDDMLAWIKTIQESS  108 (133)
T ss_dssp             -CEECSSCEEEECSSSCSCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ccceecceEEEEcccccccCceeEEecC--CCEEEEEeCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999987  5689999999999999999999865

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=98.67  E-value=2.1e-08  Score=73.64  Aligned_cols=53  Identities=34%  Similarity=0.569  Sum_probs=49.9

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT   58 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~   58 (294)
                      ..+|+|.+|.+..+.++.+++|+|.+.+. +|.+|+|+|++++|+.+|+.+|+.
T Consensus        53 ~~~i~l~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~a~s~~e~~~W~~ai~~  105 (106)
T d1btna_          53 EVPVSLKEAICEVALDYKKKKHVFKLRLS-DGNEYLFQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             CCCEECTTCEEEECSSCCSSSSEEEEECT-TSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             ceeEEeccceeeeccccccCcceEeeccc-CCCEEEEECCCHHHHHHHHHHHHh
Confidence            45789999999999999999999999999 899999999999999999999986

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=4.5e-08  Score=72.34  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.++.+....++.+++|+|.|.+. ++..|+|+|+++.++.+|+.+|+.++..
T Consensus        49 ~~i~l~~~~~~~~~~~~~~~~~F~i~~~-~~~~~~f~a~s~~~~~~Wi~ai~~a~~~  104 (109)
T d1wgqa_          49 ESQPLLGFTVTLVKDENSESKVFQLLHK-GMVFYVFKADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             EEEECSSEEEEECCCSSCSSSEEEEEET-TEEEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred             cccccceeeeeecccccccceeeeeecc-cceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            3588999999988999999999999998 8889999999999999999999998743

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=98.58  E-value=7.8e-08  Score=72.45  Aligned_cols=57  Identities=32%  Similarity=0.514  Sum_probs=51.5

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ   63 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~   63 (294)
                      ..+++.+|.+..+.++.+++|+|.+.+. ++..|+|+|++++++.+|+++|+.++...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~  119 (123)
T d1wjma_          63 VPVSLARAQGSVAFDYRKRKHVFKLGLQ-DGKEYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             CCEECTTCEEEECTTCSSCSSEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccceeEEecccccccCcEEEEEcC-CCcEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            4577888999999999999999999998 89999999999999999999999877643

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=3.9e-08  Score=76.04  Aligned_cols=50  Identities=16%  Similarity=0.319  Sum_probs=43.1

Q ss_pred             CceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        12 ~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+....+.++.+|+|+|+|.+. ++.+|+|+|+++.|+.+|+.+|+.++..
T Consensus        82 ~~~~~~~~~~~~~~~~F~l~t~-~~~~y~f~A~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_          82 EVRTTMPLEMPEKDNTFVLKVE-NGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             BCCCCCCSSSCCCTTEECCBCT-TSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeccccCCCCCcEEEEEcC-CCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            3444456788999999999999 8999999999999999999999998754

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=8.8e-08  Score=72.17  Aligned_cols=56  Identities=36%  Similarity=0.624  Sum_probs=51.7

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...+++.+|.+....+..+++|+|.|.+. ++..|+|+|++++|+.+|+.+|+.++.
T Consensus        64 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          64 EPSYDLQNAAIEIASDYTKKKHVLRVKLA-NGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             CCBCCCSSCCCEECCSSSSSTTEEEEECS-SSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             cceEeccceEEEeccccccccceEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45788899999999999999999999999 899999999999999999999999863

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.8e-07  Score=64.88  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.+|......+..+++|+|+|.+.  +..|+|+|+++.++.+|+.+|+.++.
T Consensus        45 g~i~L~~~~~v~~~~~~~~~~~F~i~~~--~r~~~l~a~s~~~~~~Wi~ai~~~i~   98 (100)
T d1faoa_          45 RILDLTECSAVQFDYSQERVNCFCLVFP--FRTFYLCAKTGVEADEWIKILRWKLS   98 (100)
T ss_dssp             EEEEGGGCCEEEEECSSSSSSEEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEechheEEEEeccccccccccccccC--CeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            4688999876655666789999999987  68899999999999999999998764

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=8.1e-07  Score=64.78  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             cccccCCceeeecc---cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~---~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.++.+..+.   +..+++|+|.|.+. ++..|+|+|+++.|+.+|+.+|+.++..
T Consensus        46 ~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~f~a~s~~e~~~W~~ai~~~i~~  104 (106)
T d1u5da1          46 GTFLIKGYSVRMAPHLRRDSKKESCFELTSQ-DRRTYEFTATSPAEARDWVDQISFLLKD  104 (106)
T ss_dssp             EEEECTTCEEEECGGGCSSGGGGGEEEEECS-SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceEeeccccccccCCceeEEEEcC-CCcEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            45889998877553   45678999999998 7889999999999999999999998754

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.4e-06  Score=62.34  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..++|.+|.+.... ..+++++|.+.+. ++..|+|+|++++|+.+|+.+|+.+.
T Consensus        41 ~~i~l~~~~v~~~~-~~~~~~~f~~~~~-~~~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          41 QPLSLVGCEVVPDP-SPDHLYSFRILHK-GEELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             EEECTTTCEEECCC-BTTBSCEEEEEET-TEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             ccccccceEEEecc-cccceecceeccc-cceeEEeeCCCHHHHHHHHHHHHHHh
Confidence            36788898876544 4678899999988 88999999999999999999999763

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.6e-06  Score=62.95  Aligned_cols=51  Identities=18%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      .|+|.+|......+..+++|+|.|.+.  +..|+|+|+|++|+.+|+.+|+.+
T Consensus        52 ~i~l~~~~~~~~~~~~~~~~~f~i~t~--~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          52 SIPLESCFNINKRADSKNKHLVALYTR--DEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EEEGGGEEEEEEECCSSCSSEEEEEES--SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEecceeeEEeecccCCCceEEEEEeC--CeEEEEEcCCHHHHHHHHHHHHhh
Confidence            478888876666678889999999987  567999999999999999999874

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=2.5e-06  Score=61.75  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=46.4

Q ss_pred             cccccCCceeeec-ccCCcCCCeEEEEecCC-CeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA-CDYTKRKHVLRLSSPSS-NTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a-~~~~krk~vf~l~~~~~-g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.+|.+... .+..+++|+|+|.+... +..|+|+|++++|+.+|+.+|++++
T Consensus        42 ~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~   98 (101)
T d2fjla1          42 GVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA   98 (101)
T ss_dssp             EEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHH
Confidence            4688889988854 56788999999998622 3679999999999999999999976

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3.4e-06  Score=65.55  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.+|.+... ...+++|+|.|.+. ++..|+|+|++++|+.+|+.+|+.++..
T Consensus        71 g~i~l~~~~~~~~-~~~~~~~~F~i~~~-~~~~~~l~A~s~~e~~~Wi~aL~~~i~~  125 (150)
T d1wg7a_          71 GSIFLDSCMGVVQ-NNKVRRFAFELKMQ-DKSSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             EEECTTTCCEECC-CCSSCTTEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc-CccccceEEEEEcC-CCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            4577877776544 45678999999988 7889999999999999999999987654

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1e-06  Score=64.13  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ..++|.+|.+..+.+ .+|+++|+|.+. +| ..|.|||++++|+.+|+.+|+.+
T Consensus        48 ~~i~l~~~~v~~~~~-~~~~~~f~i~~~-~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          48 LAMDIDNCSVMAVDC-EDRRYCFQITSF-DGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             ---EEEECCCCCCCC-CCSSSSSEECCC-SSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             eEEEecccccccccc-cCCcceEEEEee-cccceEEEECCCHHHHHHHHHHHHhc
Confidence            457788888776544 578899999988 54 58999999999999999999985

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.4e-06  Score=59.30  Aligned_cols=53  Identities=21%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             cccccCCceeeec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.+...  .+-.+++++|++.+.  +..|.|+|++++|+.+|+.+|+.++
T Consensus        44 ~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~--~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          44 RTIPLPSCKLSVPDPEERLDSGHVWKLQWA--KQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             SEECGGGCEEECCCSSSCCSSSEEEEEEET--TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccccccceeeeecccccccCCceEEEEEcC--CcEEEEECCCHHHHHHHHHHHHHhc
Confidence            4678888877643  345678999999876  7899999999999999999999865

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=8.2e-06  Score=59.94  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=48.9

Q ss_pred             CcccccCCceeee-cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           5 CERIDIGHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         5 ~~~~~l~~~~~~~-a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ...|+|.++.+.. +.+..+++++|.+.+. ++..|.|+|++++|+.+|+.+|+.++..
T Consensus        45 ~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~-~~~~~~~~a~s~~e~~~Wi~ai~~ai~~  102 (113)
T d1plsa_          45 KGMIPLKGSTLTSPCQDFGKRMFVFKITTT-KQQDHFFQAAFLEERDAWVRDINKAIKC  102 (113)
T ss_dssp             SEEEESSSCCEESSCCSSCCSSSEEEEEET-TTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEEECccCeEEeeecccCCcceEEEEecC-CCeEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            3468899987764 4567788999999999 8999999999999999999999987654

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=6.7e-06  Score=60.20  Aligned_cols=54  Identities=13%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             cccccCCceeeec---ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVA---CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a---~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..++|.++.+...   .+..+++|+|.|.+. ++.+|+|+|+++.|+.+|+.+|+.++
T Consensus        54 g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          54 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAP-DKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             EEEECTTCEEEECTTSCSSTTGGGEEEEECT-TSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eEEEecccEEEeeccccccccccceEEEEcc-CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            3678888776643   346778999999998 88999999999999999999998764

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.7e-06  Score=58.64  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             CcccccCCceeee--cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEV--ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         5 ~~~~~l~~~~~~~--a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ...++|.++.+..  ..+..+++++|.+.+. ++..|.|+|+|++|+.+|+.+|+.++
T Consensus        50 ~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          50 LGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP-GMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             CEEEEGGGCEEEECCSSCTTSSSSEEEEECT-TSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cceecccceEEEEeccCcccCcceEEEEEcC-CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            3467888888763  4578888999999998 88899999999999999999998864

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=7.5e-06  Score=67.05  Aligned_cols=55  Identities=13%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             cccccCCceeeecc---cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~---~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+..+.   ...+|+|+|.|.+. ++..|+|+|+++.++.+|+.+|+.++.
T Consensus       149 ~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~-~~r~~~f~a~s~~e~~~Wi~al~~~i~  206 (209)
T d1u5ea1         149 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAP-DKRIYQFTAASPKDAEEWVQQLKFILQ  206 (209)
T ss_dssp             EEEECTTCEEEECGGGCSSTTGGGEEEEECS-SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEecceeeeeccccccccCCCcEEEEEcC-CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            46899998877543   35678999999998 888999999999999999999998864

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.5e-06  Score=60.11  Aligned_cols=54  Identities=13%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CcccccCCceeeec--------ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716           5 CERIDIGHNCVEVA--------CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH   59 (294)
Q Consensus         5 ~~~~~l~~~~~~~a--------~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~   59 (294)
                      ...|+|.++.+...        ....++.++|++.+. ++..|+|+|++++|+.+|+++|+.+
T Consensus        54 ~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          54 VGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITK-DDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCT-TCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             eeEEEcCCCEEEEecccCcccccccccccceeEEEeC-CCeEEEEECCCHHHHHHHHHHHHhh
Confidence            34678888876543        235667899999998 8899999999999999999999985

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.7e-05  Score=56.94  Aligned_cols=54  Identities=15%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             cccccCCceeeecc-----cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVAC-----DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~-----~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..+++.++.+..+.     ...++.|+|.+.+. ++..|+|+|+|+.|+.+|+.+|+.++
T Consensus        45 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          45 GAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-DEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             EEEECTTCEEEEECC--------CCSEEEEECT-TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceEeecceEEEEeccCcccccccCccEEEEECC-CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            45788888776543     35667899999998 89999999999999999999999865

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=60.73  Aligned_cols=55  Identities=18%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             CcccccCCceeee-cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           5 CERIDIGHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         5 ~~~~~l~~~~~~~-a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...|+|.+|.+.. ..+..+++|.|.|.+.  +..|.|+|+|+.++.+|+.+|+.++.
T Consensus        51 ~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~--~~~~~f~Aes~~e~~~Wi~~I~~v~~  106 (136)
T d1x1fa1          51 VDKLDIVDLTCLTEQNSTEKNCAKFTLVLP--KEEVQLKTENTESGEEWRGFILTVTE  106 (136)
T ss_dssp             SEECCCSSCCEEEECCCTTSCCCEEEEECS--SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeeeeecccccccceeeecCC--CceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            4568898887664 4566778999999987  56799999999999999999999864

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.6e-05  Score=56.65  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=44.7

Q ss_pred             ccccCCceeeec--ccCCcCCCeEEEEecCCC-------eeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           7 RIDIGHNCVEVA--CDYTKRKHVLRLSSPSSN-------TELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         7 ~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g-------~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .++|.++.+...  .+..++.|+|+|.+. ++       ..|+|+|++++|+.+|+.+|+.++..
T Consensus        50 ~~~l~~~~~~~~~~~~~~~~~~~f~l~~~-~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~  113 (118)
T d1v89a_          50 CMYLPGCTIKEIATNPEEAGKFVFEIIPA-SWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             EECSTTEEEEEECCCSSCCCCCEEEEEES-CCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             eeccCceEEEEeccccccCCCcEEEEecC-CCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence            578888888843  356677999999887 43       35999999999999999999998643

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.4e-05  Score=55.63  Aligned_cols=53  Identities=11%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhcc
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS   64 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~   64 (294)
                      ..|+|.++....    ..+.|+|.|.+.  +..|+|+|+++.|+.+|+.+|+.++...+
T Consensus        43 ~~i~L~~~~~~~----~~~~~~f~i~~~--~~~~~l~a~s~~e~~~Wi~ai~~~i~~~~   95 (102)
T d2coda1          43 GIIPLSAISTVR----VQGDNKFEVVTT--QRTFVFRVEKEEERNDWISILLNALKSQS   95 (102)
T ss_dssp             CEEETTTEEEEE----EETTTEEEEEES--SCCEEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEchhceeec----cccceeEEEEcC--CcEEEEEeCCHHHHHHHHHHHHHHHHhCc
Confidence            356676655443    357899999987  67899999999999999999999875543

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.8e-05  Score=54.91  Aligned_cols=54  Identities=9%  Similarity=0.182  Sum_probs=39.6

Q ss_pred             cccccCCceeeec--ccC-CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVA--CDY-TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a--~~~-~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|++.++.+...  .+. .++.+.|.+.+  ++..|.|+|++++|+.+|+.+|+.++.
T Consensus        54 ~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~--~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          54 ELLQLDGYTVDYTDPQPGLEGGRAFFNAVK--EGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             EEEECSSCEEEECCCCSSCCSCSSEEEEEC--SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eeeeeceeeeeeccccccccccceeEEecc--CCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence            3577777776643  233 34455555554  588999999999999999999998764

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.9e-05  Score=56.28  Aligned_cols=55  Identities=11%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             cccccCCceeee-cccCCcCCCeEEEEec------CCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEV-ACDYTKRKHVLRLSSP------SSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~-a~~~~krk~vf~l~~~------~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|+|.++.+.. ..+..+|+|+|+|.+.      .++..|+|+|++++|+.+|+.+|..++
T Consensus        46 ~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          46 YMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             EEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccccccceeEeeccccccccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence            457788887664 4567789999999875      134579999999999999999998864

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.5e-05  Score=54.56  Aligned_cols=55  Identities=18%  Similarity=0.316  Sum_probs=44.4

Q ss_pred             cccccCCceeeec---ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVA---CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a---~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.++.....   .+..+.+|+|.+.+.  +..|+|+|++++|+.+|+.+|+.++.+
T Consensus        44 ~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~--~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          44 RVIPLKEVHKVQECKQSDIMMRDNLFEIVTT--SRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             EEEEGGGCCEEEECTTHHHHTCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEccceEEeeccccccccccceEEEEEeC--CEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            3567777765533   346788999999986  689999999999999999999988653

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=9.2e-05  Score=55.33  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=41.3

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCe-----------------------eEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNT-----------------------ELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~-----------------------e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|+|.++.+... ...+++++|+|... ++.                       .|+|+|++++|+.+||.+|+.++.
T Consensus        48 g~i~L~~~~v~~~-~~~~~~~~f~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_          48 GTVLLNACEIIER-PSKKDGFCFKLFHP-LEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             EEEECSSCEECCC-CTTTSSCEEEEECT-TCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eEEECCCeEEEEc-cccCCCceEEEEcC-CCcceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhh
Confidence            3678888877543 34567889998665 322                       268999999999999999999874

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.00026  Score=51.53  Aligned_cols=55  Identities=16%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..++|.++.+.-..|-..-+|+|++.+.  ...|+|+|++.+|...|+.+|+++..+
T Consensus        50 ~~~~l~~~~v~~~~d~~~~~n~f~i~~~--~~~~~~~a~s~~eK~~W~~~l~~a~~~  104 (109)
T d1zc3b1          50 ALYPLDRLAVVNVKDNPPMKDMFKLLMF--PESRIFQAENAKIKREWLEVLEETKRA  104 (109)
T ss_dssp             EEEETTTCEEEEECCBTTBSSEEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eEEeccceEEEEeecccccceEEEEccC--CCEEEEEECCHHHHHHHHHHHHHHHHH
Confidence            3578888888765666678899999987  478999999999999999999997643

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.33  E-value=0.00017  Score=53.23  Aligned_cols=55  Identities=16%  Similarity=0.275  Sum_probs=41.9

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..|+|.++ +.+...-..++++|.+.+. ++..|.|+|+++.|+.+|+.+|+.+...
T Consensus        50 ~~i~l~~~-~~v~~~~~~~~~~f~i~~~-~~~~~~f~a~s~~e~~~W~~al~~a~~~  104 (119)
T d1omwa2          50 SLLTMEEI-QSVEETQIKERKCLLLKIR-GGKQFVLQCDSDPELVQWKKELRDAYRE  104 (119)
T ss_dssp             EEEEGGGE-EEEEEEESSSCEEEEEEET-TSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccceeccc-cccccccccccceEEEEcC-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            34555543 2333344667889999988 7889999999999999999999987543

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00019  Score=54.36  Aligned_cols=54  Identities=9%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      .|.|.++.+....+-...+|.|.+... ....|+|+|.+++|+.+|++.|++...
T Consensus        73 ~i~l~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_          73 KIPIAGMVVNRLDEIEGSDCMFEITGS-TVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             EECTTTCBCSTTCSSSSSCCCEEEECS-SSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             ecchhhccccccccccCccceEEEeCC-CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            466777777766666677899999987 677899999999999999999998763

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00035  Score=50.86  Aligned_cols=43  Identities=14%  Similarity=0.120  Sum_probs=35.7

Q ss_pred             ccCCcCCCeEEEEecCCC---eeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          19 CDYTKRKHVLRLSSPSSN---TELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        19 ~~~~krk~vf~l~~~~~g---~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+..+++|.|.+... ++   .+|+|+|++++|+.+|+.+|+.++..
T Consensus        65 ~~~~~~~~~f~i~~~-~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~  110 (118)
T d1unqa_          65 KTERPRPNTFIIRCL-QWTTVIERTFHVETPEEREEWTTAIQTVADG  110 (118)
T ss_dssp             EECSSSTTEEEEEEE-ETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEec-cccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            345678899999876 44   46999999999999999999998754

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00092  Score=49.14  Aligned_cols=57  Identities=11%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             CcccccCCceeeecccCCcCCCeEEEEec--------------------CCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           5 CERIDIGHNCVEVACDYTKRKHVLRLSSP--------------------SSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~--------------------~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ...|+|.++.+....+ .+++++|.+...                    .++..|+|+|++++|+.+|+.+|+.++..
T Consensus        45 ~g~i~L~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~  121 (127)
T d1fgya_          45 RGIIPLENLSIREVLD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             SEEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cceEeCCCeEEEEccC-CCCCceEEEeccccccccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            3468888887765433 445666665321                    14577999999999999999999998754

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.0006  Score=50.45  Aligned_cols=36  Identities=19%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716          23 KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus        23 krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ++.++|.+.+.  +..|+|+|++++|+.+|+.+|+.++
T Consensus        84 ~~~~~~~~~~~--~r~~~l~Aes~~e~~~Wi~aL~~A~  119 (126)
T d1v5pa_          84 KTPFCFVINAL--SQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             SCSSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             cccceEEEcCC--CeeEEEECCCHHHHHHHHHHHHHHh
Confidence            45678888775  7999999999999999999999875

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00032  Score=55.25  Aligned_cols=39  Identities=10%  Similarity=0.105  Sum_probs=34.4

Q ss_pred             CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          22 TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        22 ~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .++.++|+|.+.  +..|.|+|++++|+.+||.+|+.++..
T Consensus        95 ~~~~~~F~I~t~--~rt~~l~A~s~eE~~~WI~aL~~~i~~  133 (169)
T d1btka_          95 ERFPYPFQVVYD--EGPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             HCCCEEEEEEET--TCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             cccCcceEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            467899999987  568999999999999999999998743

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0013  Score=49.33  Aligned_cols=53  Identities=11%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .+.|.++.+.-..+-...+|.|++... ++..|+|+|.+++|...|+.+|..+.
T Consensus        76 ~i~l~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~l~a~s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2          76 KFFMRKVQINDKDDTNEYKHAFEIILK-DENSVIFSAKSAEEKNNWMAALISLQ  128 (133)
T ss_dssp             EEESCSCEEEECCCSSSCCSEEEECCT-TSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeecccccccccCCCcccccceeEEcC-CCcEEEEEECCHHHHHHHHHHHHHHH
Confidence            578888888755565667999999987 77889999999999999999998653

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0015  Score=49.58  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716           6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .++.|.++.+....|-..-+++|.+...  +..|+|+|+++.|...|+.+|++++..
T Consensus        79 ~~i~l~~l~v~~~~d~~~~~~~~~~~~~--~~~~~l~a~s~~ek~~W~~~I~~Ai~~  133 (142)
T d1ki1b2          79 TPIFLNEVLVKLPTDPSGDEPIFHISHI--DRVYTLRAESINERTAWVQKIKAASEL  133 (142)
T ss_dssp             SCEEGGGEEEECCSSSCCC---CEEEET--TEEEECBCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhheeeccCCcccceeEEEecCC--CEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            4677888888766666667899999876  788999999999999999999998754

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0012  Score=47.88  Aligned_cols=54  Identities=13%  Similarity=0.197  Sum_probs=38.4

Q ss_pred             cccccCCceeee-cc------cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVEV-AC------DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~~-a~------~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ..|.|.++.+-. ..      ....+.+.|.+.+.  +..|+|+|++++|+.+|+.+|+.++.
T Consensus        51 g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          51 GVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT--RRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             CEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES--SCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             eEEEecceEEEeecccccccccccccceEEEeeCC--CcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            356666654432 21      22334567777765  78999999999999999999988653

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0022  Score=46.51  Aligned_cols=51  Identities=10%  Similarity=0.186  Sum_probs=36.7

Q ss_pred             ccccCCceee-eccc-----CCcCCCeEEEEecCCCeeEEEec-----------CChhHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVE-VACD-----YTKRKHVLRLSSPSSNTELLLQA-----------DDTLTMAHWIRDLQTH   59 (294)
Q Consensus         7 ~~~l~~~~~~-~a~~-----~~krk~vf~l~~~~~g~e~l~qa-----------~~~~~~~~W~~~i~~~   59 (294)
                      .|+|.++..- .+.+     ...++|+|+|.+.  +..|.|.+           +++.++.+|+.+|+++
T Consensus        43 ~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~--~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          43 EIPLSEILTVESAQNFSLVPPGTNPHCFEIVTA--NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             EEETTTCCEEEESCCCSSSCTTSCCEEEEEECS--SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             EEeeeccccccccccccccccCCCccEEEEEeC--CeEEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence            3566554433 3333     3457899999997  67887855           6788999999999985

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0044  Score=47.48  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          22 TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        22 ~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      .+++++|.|.+.  +..|+|+|.+ .|+.+|+.+|+.+.+.
T Consensus        99 ~~~~~~F~I~t~--~Rty~l~a~~-~d~~~Wv~aI~~v~~~  136 (147)
T d1w1ha_          99 AKNFKTFFVHTP--NRTYYLMDPS-GNAHKWCRKIQEVWRQ  136 (147)
T ss_dssp             EEETTEEEEECS--SCEEEEECTT-SCHHHHHHHHHHHHHH
T ss_pred             cccCceEEEecC--ceEEEEEcCh-HHHHHHHHHHHHHHHH
Confidence            467899999987  6789999866 5899999999988653

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.011  Score=45.50  Aligned_cols=54  Identities=20%  Similarity=0.282  Sum_probs=39.4

Q ss_pred             ccccCCceeeeccc------CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           7 RIDIGHNCVEVACD------YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         7 ~~~l~~~~~~~a~~------~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      .++|.++.+....+      -...+|.|++.....+..|+|+|.+++|...|+.+|++..
T Consensus        73 ~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~  132 (162)
T d2dfka2          73 RIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREER  132 (162)
T ss_dssp             EEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccchhhceeeecccccccccCccccceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            35566666653322      1224799999876355679999999999999999999754

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=93.98  E-value=0.038  Score=39.84  Aligned_cols=53  Identities=19%  Similarity=0.159  Sum_probs=37.7

Q ss_pred             cccccCCceee-ecccCCcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716           6 ERIDIGHNCVE-VACDYTKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus         6 ~~~~l~~~~~~-~a~~~~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ++|.|....+. .+.   ..++.|.+.+.++| .-|.|||.++++...|++.|+++++
T Consensus        59 ~~i~l~~l~v~e~~~---d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          59 PVIKLSTVLVRQVAT---DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             SEEEGGGEEEEECCC----CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEcccEEEEEcCC---CCCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            34556555554 332   33567888776344 4699999999999999999998763

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.045  Score=40.73  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=29.4

Q ss_pred             CCCeEEEEec---CCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          24 RKHVLRLSSP---SSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        24 rk~vf~l~~~---~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      -+|-|.+...   ..+..|.|||.+++|...|+.+|++++.
T Consensus        98 ~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~  138 (140)
T d1xcga2          98 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  138 (140)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            3566777542   1245699999999999999999998764

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.11  Score=37.32  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CCCeEEEEec---CCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716          24 RKHVLRLSSP---SSNTELLLQADDTLTMAHWIRDLQTHAIA   62 (294)
Q Consensus        24 rk~vf~l~~~---~~g~e~l~qa~~~~~~~~W~~~i~~~~~~   62 (294)
                      ..+.|.|...   .....|+|+|.++++...|+.+|++++.+
T Consensus        78 ~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          78 DPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             CTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            3567888542   13456999999999999999999987754

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.41  E-value=0.39  Score=33.42  Aligned_cols=55  Identities=16%  Similarity=0.364  Sum_probs=41.4

Q ss_pred             cccccCCceeeecccCCcC-CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716           6 ERIDIGHNCVEVACDYTKR-KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA   60 (294)
Q Consensus         6 ~~~~l~~~~~~~a~~~~kr-k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~   60 (294)
                      ..|.|+=|-+....-.... ...|.|.+.++-...+|.+.|..+.+.|+.+|+..+
T Consensus        48 k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i  103 (105)
T d2adza1          48 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  103 (105)
T ss_dssp             EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ceeeeeeEEeeecccCCCCcccEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            3455666666654444443 558999999444788999999999999999999865

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.24  E-value=0.35  Score=36.09  Aligned_cols=39  Identities=10%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716          23 KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI   61 (294)
Q Consensus        23 krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~   61 (294)
                      ...+.|.+...+....|.|+|.++++...|+.+|+.+..
T Consensus        90 ~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~  128 (147)
T d1kz7a2          90 GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLT  128 (147)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            344556666554567899999999999999999998653