Psyllid ID: psy571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccEcccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
maspfigatdsavPCAMLLYIARLMRQELSQLNQNLGldliffdgeeafnewsaeDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLlgtsnprfysyyppthkwyKQLVGIESRLTAQGLLNMVNsnrskkltyfremstfpvaeddhlpfyyr
Flexible Loop (DISEMBL)
maspfigatdsavpCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKwershlqhrgktltkldrmDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREmstfpvaeddhlpfyyr
Low Complexity Region (SEG)
MASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKldrmdmlvlldllGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR
Disordered region (IsUnstruct)
*****IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF***
Disordered Region (DISOPRED)
*ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR
Disordered Region (DISEMBL)
********TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR
Disordered Region (DISPRO)
****FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNM*********TYFR**STFPVAEDDHLPFYYR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9CYK2	362	Glutaminyl-peptide cyclot	yes	N/A	0.932	0.417	0.447	1e-32
Q16769	361	Glutaminyl-peptide cyclot	yes	N/A	0.950	0.426	0.445	1e-31
A7ISW1	368	Glutaminyl-peptide cyclot	N/A	N/A	0.944	0.415	0.451	5e-30
A7ISW2	368	Glutaminyl-peptide cyclot	N/A	N/A	0.944	0.415	0.451	6e-30
Q0V8G3	383	Glutaminyl-peptide cyclot	yes	N/A	0.950	0.402	0.414	3e-29
Q90YA8	368	Glutaminyl-peptide cyclot	N/A	N/A	0.950	0.418	0.442	3e-29
Q8BH73	383	Glutaminyl-peptide cyclot	no	N/A	0.938	0.396	0.419	7e-29
Q4R942	382	Glutaminyl-peptide cyclot	N/A	N/A	0.950	0.403	0.426	4e-27
Q9NXS2	382	Glutaminyl-peptide cyclot	no	N/A	0.950	0.403	0.426	4e-27
Q28120	361	Glutaminyl-peptide cyclot	no	N/A	0.950	0.426	0.445	3e-26

>sp|Q9CYK2|QPCT_MOUSE Glutaminyl-peptide cyclotransferase OS=Mus musculus GN=Qpct PE=1 SV=2

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 101/161 (62%), Gaps = 10/161 (6%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF+ WS +DS+
Sbjct: 155 FVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLRLIFFDGEEAFHHWSPQDSL 214

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA K   S      +   +LD MD+LVLLDL+G +NP F +++P T +W+ +L  
Sbjct: 215 YGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQA 274

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
           IE  L   GLL     + S +  YF+      + +DDH+PF
Sbjct: 275 IEKELYELGLLK----DHSLERKYFQNFGYGNIIQDDHIPF 311

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 5

>sp|Q16769|QPCT_HUMAN Glutaminyl-peptide cyclotransferase OS=Homo sapiens GN=QPCT PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 10/164 (6%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQEL------SQLNQNLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L      S    +L L LIFFDGEEAF  WS +DS+
Sbjct: 154 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 213

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++L  MD+LVLLDL+G  NP F +++P + +W+++L  
Sbjct: 214 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 273

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 274 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 313

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue. Also catalyzes N-terminal pyroglutamate formation. In vitro, catalyzes pyroglutamate formation of N-terminally truncated form of APP amyloid-beta peptides [Glu-3]-beta-amyloid. May be involved in the N-terminal pyroglutamate formation of several amyloid-related plaque-forming peptides.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|A7ISW1|QPCT_BOIIR Glutaminyl-peptide cyclotransferase OS=Boiga irregularis GN=QPCT PE=2 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 13/166 (7%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ-------NLGLDLIFFDGEEAFNEWSAEDS 57
           F+GATDSAVPCAM+L +AR + ++LS L Q       +L L LIFFDGEEAF  WS  DS
Sbjct: 159 FVGATDSAVPCAMMLELARSLDRQLSFLKQSSLPPKADLSLKLIFFDGEEAFVRWSPSDS 218

Query: 58  IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 117
           ++G+R LA K   +      +   ++  +D+ VLLDL+G  NP F  Y+  T +W+ +L 
Sbjct: 219 LYGSRSLAQKMASTPHPPGARNTNQIQGIDLFVLLDLIGARNPVFPVYFLNTARWFGRLE 278

Query: 118 GIESRLTAQGLLNMVNSNRSKKLTYFR-EMSTFPVAEDDHLPFYYR 162
            IE  L   GLLN  +S R     YFR  +  +PV EDDH+PF  R
Sbjct: 279 AIEQSLHDLGLLNNYSSERQ----YFRSNLRRYPV-EDDHIPFLRR 319

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue. Also catalyzes N-terminal pyroglutamate formation.

Boiga irregularis (taxid: 92519)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|A7ISW2|QPCT_BOIDE Glutaminyl-peptide cyclotransferase OS=Boiga dendrophila GN=QPCT PE=2 SV=1

 Score =  129 bits (325), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 100/166 (60%), Gaps = 13/166 (7%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ-------NLGLDLIFFDGEEAFNEWSAEDS 57
           F+GATDSAVPCAM+L +AR + ++LS L Q       +L L LIFFDGEEAF  WS  DS
Sbjct: 159 FVGATDSAVPCAMMLELARSLDRQLSFLKQSSLPPKADLSLKLIFFDGEEAFVRWSPSDS 218

Query: 58  IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 117
           ++G+R LA K   +      +   ++  +D+ VLLDL+G  NP F  Y+  T +W+ +L 
Sbjct: 219 LYGSRSLAQKMASTPHPPGARNTNQIQGIDLFVLLDLIGARNPVFPVYFLNTARWFGRLE 278

Query: 118 GIESRLTAQGLLNMVNSNRSKKLTYFR-EMSTFPVAEDDHLPFYYR 162
            IE  L   GLLN  +S R     YFR  +  +PV EDDH+PF  R
Sbjct: 279 AIEQSLHDLGLLNNYSSERQ----YFRSNIRRYPV-EDDHIPFLRR 319

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue. Also catalyzes N-terminal pyroglutamate formation.

Boiga dendrophila (taxid: 46286)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q0V8G3|QPCTL_BOVIN Glutaminyl-peptide cyclotransferase-like protein OS=Bos taurus GN=QPCTL PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 10/164 (6%)

Query: 2   ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSI 58
           ++PF+GATDSAVPC++LL +A+ + QEL +  +    + L LIF DGEEA  +W  +DS+
Sbjct: 179 SAPFVGATDSAVPCSLLLELAQALDQELGKAKERAAPMTLQLIFLDGEEALKQWGPKDSL 238

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA   E +     G   T++  +++ +LLDLLG  NP FYS++P T +W+ +L  
Sbjct: 239 YGSRHLAQLMESTP---HGLGSTRIQAIELFMLLDLLGAPNPTFYSHFPRTARWFHRLRS 295

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE RL     LN++ S+   ++ YF+        EDDH+PF  R
Sbjct: 296 IEKRLHR---LNLLQSH-PWEVMYFQTGEPPGSVEDDHIPFLRR 335

Responsible for the biosynthesis of pyroglutamyl peptides.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q90YA8|QPCT_GLOBL Glutaminyl-peptide cyclotransferase OS=Gloydius blomhoffii GN=QPCT PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 96/165 (58%), Gaps = 11/165 (6%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ-------NLGLDLIFFDGEEAFNEWSAEDS 57
           F+GATDSAVPCAM+L +AR + ++LS L Q       +L L LIFFDGEEAF  WS  DS
Sbjct: 159 FVGATDSAVPCAMMLELARSLDRQLSFLKQSSLPPKADLSLKLIFFDGEEAFVRWSPSDS 218

Query: 58  IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 117
           ++G+R LA K   +      +   ++  +D+ VLLDL+G  NP F  Y+  T +W+ +L 
Sbjct: 219 LYGSRSLAQKMASTPHPPGARNTYQIQGIDLFVLLDLIGARNPVFPVYFLNTARWFGRLE 278

Query: 118 GIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
            IE  L   GLLN  +S R     YFR        EDDH+PF  R
Sbjct: 279 AIEQNLYDLGLLNNYSSERQ----YFRSNLRRHPVEDDHIPFLRR 319

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue. Also catalyzes N-terminal pyroglutamate formation.

Gloydius blomhoffii (taxid: 242054)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q8BH73|QPCTL_MOUSE Glutaminyl-peptide cyclotransferase-like protein OS=Mus musculus GN=Qpctl PE=2 SV=1

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 10/162 (6%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWG 60
           PF+GATDSAVPCA+LL + + +   LS++ Q    + L L+F DGEEA  EW  +DS++G
Sbjct: 181 PFVGATDSAVPCALLLELVQALDAMLSRIKQQAAPVTLQLLFLDGEEALKEWGPKDSLYG 240

Query: 61  ARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIE 120
           +RHLA   E   + H     T++  +++ VLLDLLG S+P F+S++P T +W+++L  IE
Sbjct: 241 SRHLAQIMES--IPHSPGP-TRIQAIELFVLLDLLGASSPIFFSHFPRTARWFQRLRSIE 297

Query: 121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
            RL     LN++ S+  +++ YF+        EDDH+PF  R
Sbjct: 298 KRLHR---LNLLQSH-PQEVMYFQPGEPPGPVEDDHIPFLRR 335

Responsible for the biosynthesis of pyroglutamyl peptides.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q4R942|QPCTL_MACFA Glutaminyl-peptide cyclotransferase-like protein OS=Macaca fascicularis GN=QPCTL PE=2 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 105/164 (64%), Gaps = 10/164 (6%)

Query: 2   ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSI 58
           ++PF+GATDSAVPCA+LL +A+ +  ELS+  +    + L L+F DGEEA  EW  +DS+
Sbjct: 178 STPFVGATDSAVPCALLLELAQALDLELSRAKEQAAPVTLQLLFLDGEEALKEWGPKDSL 237

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA   E   + H     T++  +++ +LLDLLG  NP FYS++P T +W+ +L  
Sbjct: 238 YGSRHLAQLMES--IPHSPGP-TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 294

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE RL     LN++ S+  +++ YF+    F   EDDH+PF  R
Sbjct: 295 IEKRLHR---LNLLQSH-PQEVMYFQPGEPFGSVEDDHIPFLRR 334

Responsible for the biosynthesis of pyroglutamyl peptides.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9NXS2|QPCTL_HUMAN Glutaminyl-peptide cyclotransferase-like protein OS=Homo sapiens GN=QPCTL PE=1 SV=2

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 105/164 (64%), Gaps = 10/164 (6%)

Query: 2   ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSI 58
           ++PF+GATDSAVPCA+LL +A+ +  ELS+  +    + L L+F DGEEA  EW  +DS+
Sbjct: 178 STPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSL 237

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA   E   + H     T++  +++ +LLDLLG  NP FYS++P T +W+ +L  
Sbjct: 238 YGSRHLAQLMES--IPHSPGP-TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 294

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE RL     LN++ S+  +++ YF+    F   EDDH+PF  R
Sbjct: 295 IEKRLHR---LNLLQSH-PQEVMYFQPGEPFGSVEDDHIPFLRR 334

Responsible for the biosynthesis of pyroglutamyl peptides.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q28120|QPCT_BOVIN Glutaminyl-peptide cyclotransferase OS=Bos taurus GN=QPCT PE=1 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 10/164 (6%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF+ WS +DS+
Sbjct: 154 FVGATDSAVPCAMMLELARALDKQLFSLKNISDSRPDLSLQLIFFDGEEAFHLWSPQDSL 213

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA+K   +      +   +L  MD+LVLLDL+G   P F +++P T +W+ +L  
Sbjct: 214 YGSRHLASKMASTPHPPGARDTNQLHGMDLLVLLDLIGAPFPTFPNFFPNTARWFGRLEA 273

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL   +S R     YFR      V +DDH+PF  R
Sbjct: 274 IEHGLRELGLLKDHSSER----WYFRNYGYGGVIQDDHIPFLRR 313

Responsible for the biosynthesis of pyroglutamyl peptides. Has a bias against acidic and tryptophan residues adjacent to the N-terminal glutaminyl residue and a lack of importance of chain length after the second residue. Also catalyzes N-terminal pyroglutamate formation.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
193669385	332	PREDICTED: glutaminyl-peptide cyclotrans	0.938	0.457	0.496	5e-37
241846271	353	glutaminyl cyclase, putative [Ixodes sca	0.962	0.441	0.479	6e-36
157127139	346	glutaminyl-peptide cyclotransferase [Aed	0.919	0.430	0.481	4e-35
442758343	354	Putative m28 zn-peptidase glutaminyl cyc	0.969	0.443	0.473	7e-35
332025616	349	Glutaminyl-peptide cyclotransferase [Acr	0.962	0.446	0.477	2e-34
94469164	346	glutaminyl-peptide cyclotransferase [Aed	0.919	0.430	0.475	2e-34
322785963	354	hypothetical protein SINV_02605 [Solenop	0.944	0.432	0.483	5e-34
346465727	409	hypothetical protein [Amblyomma maculatu	0.944	0.374	0.469	9e-34
195495857	351	GE19688 [Drosophila yakuba] gi|194181547	0.907	0.418	0.509	1e-33
91089521	1022	PREDICTED: similar to glutaminyl-peptide	0.938	0.148	0.465	2e-33

>gi|193669385|ref|XP_001950967.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Acyrthosiphon pisum]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 7/159 (4%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQL-NQNLGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           F+GATDSAVPCAM+LY+A  + Q L    N  L L ++FFDGEEAF EWS  DS++G+RH
Sbjct: 131 FVGATDSAVPCAMMLYMAESLNQRLEAFKNTPLSLMMVFFDGEEAFEEWSDSDSLYGSRH 190

Query: 64  LAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           LA+K E +   H G+ L +L R++ L+LLDLLGT NP+FY+Y+  T   Y+ L+  E+ L
Sbjct: 191 LASKMENTKFLHNGRQLNQLYRIEFLMLLDLLGTKNPKFYNYFLETADLYRSLIKSETIL 250

Query: 124 TAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
              G L           TYFR MS F   +DDH+PFY R
Sbjct: 251 NKTGCL------IEHTDTYFRPMSAFVKIDDDHIPFYQR 283

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241846271|ref|XP_002415553.1| glutaminyl cyclase, putative [Ixodes scapularis] gi|215509765|gb|EEC19218.1| glutaminyl cyclase, putative [Ixodes scapularis]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 103/169 (60%), Gaps = 13/169 (7%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLN---QNLGLDLIFFDGEEAFNEWSAEDSIWGA 61
           FIGATDSAVPCA LLY+AR +  +L         L L L+FFDGEEAF  WS+ DS++G+
Sbjct: 139 FIGATDSAVPCAQLLYLARSLNGKLQNQKTRGDGLTLQLVFFDGEEAFERWSSHDSLYGS 198

Query: 62  RHLAAKWERSHLQ--------HRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWY 113
           RHLA KW               R +   ++DRM+++VLLDLLG  NPRFYSY+  T   Y
Sbjct: 199 RHLAQKWHEDRTSAERLESCLERSEIANQIDRMEVMVLLDLLGAENPRFYSYFGETQPVY 258

Query: 114 KQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           ++LV IESRL   GL+ +    R ++  YF   ST    EDDH+PF  R
Sbjct: 259 RRLVNIESRLNDAGLMEL--PRRRRRTNYFSNSSTVGFIEDDHIPFLKR 305

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127139|ref|XP_001661052.1| glutaminyl-peptide cyclotransferase [Aedes aegypti] gi|108873036|gb|EAT37261.1| AAEL010727-PA [Aedes aegypti]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 105/164 (64%), Gaps = 15/164 (9%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGAR 62
           FIGATDSAVPCAM+L +A  ++ + S+  L+ +L L L+FFDGEEAF++W  +DSI+GAR
Sbjct: 142 FIGATDSAVPCAMMLDLAESLKAQFSKKKLDNSLSLQLVFFDGEEAFHQWGPKDSIYGAR 201

Query: 63  HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
           HLAA+WE         T  KL ++DMLVLLDLLG  +P FYSY+  T  WY QL+  E R
Sbjct: 202 HLAARWE---------TEDKLKKIDMLVLLDLLGAPDPNFYSYFKNTESWYAQLISAEER 252

Query: 123 LTAQGLLNMVN----SNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           L   G L   +    +   + + YF+  S +   EDDH+PF  R
Sbjct: 253 LERAGHLERYSYSSVAPNQQTIRYFQPHSYYAYIEDDHIPFLQR 296

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442758343|gb|JAA71330.1| Putative m28 zn-peptidase glutaminyl cyclase [Ixodes ricinus]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 14/171 (8%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLN---QNLGLDLIFFDGEEAFNEWSAEDSIWG 60
           PFIGATDSAVPCA L+Y+AR +  +L         L L L+FFDGEEAF  WS+ DS++G
Sbjct: 138 PFIGATDSAVPCAQLVYLARSLNGKLQNQKTRGDGLTLQLVFFDGEEAFERWSSHDSLYG 197

Query: 61  ARHLAAKWER---------SHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHK 111
           +R LA KW           S L+       ++DRM+++VLLDLLG  NPRFYSY+  T  
Sbjct: 198 SRPLAQKWHEDRTSAEKLESCLERSEIRANQIDRMEVMVLLDLLGAENPRFYSYFGETQP 257

Query: 112 WYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
            Y++LV IESRL   GL+ +    R ++  YF   ST    EDDH+PF  R
Sbjct: 258 VYRRLVSIESRLNDAGLMEL--PRRRRRTNYFSNSSTVGFIEDDHIPFLKR 306

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025616|gb|EGI65778.1| Glutaminyl-peptide cyclotransferase [Acromyrmex echinatior]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHL 64
           F+GATDSAVPCA L+ +A +M + L++  Q++ L LIFFDGEEAF EW   DSI+GA+HL
Sbjct: 142 FVGATDSAVPCAQLINLATVMSKYLTK-QQDVSLMLIFFDGEEAFEEWGPNDSIYGAKHL 200

Query: 65  AAKWERSHLQH-RGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           A +W  +   H  G   ++LD+MD+LVLLDLLG  +P FY+Y+  T KWY  LV IE +L
Sbjct: 201 AKQWHNNKTAHSEGIYFSELDKMDILVLLDLLGAPDPTFYNYFKNTEKWYSLLVNIEKKL 260

Query: 124 TAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
                 +  + +R ++  YF+  S  P  EDDH+PF+ +
Sbjct: 261 AYLRKFDSYSYDRPEQ-RYFQPYSFDPHIEDDHIPFFQK 298

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469164|gb|ABF18431.1| glutaminyl-peptide cyclotransferase [Aedes aegypti]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 104/164 (63%), Gaps = 15/164 (9%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGAR 62
           FIGATDSAVPCAM+L +A  ++ + S+  L+ +L L  +FFDGEEAF++W  +DSI+GAR
Sbjct: 142 FIGATDSAVPCAMMLDLAESLKAQFSKKKLDNSLSLQPVFFDGEEAFHQWGPKDSIYGAR 201

Query: 63  HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
           HLAA+WE         T  KL ++DMLVLLDLLG  +P FYSY+  T  WY QL+  E R
Sbjct: 202 HLAARWE---------TEDKLKKIDMLVLLDLLGAPDPNFYSYFKNTESWYAQLISAEER 252

Query: 123 LTAQGLLNMVN----SNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           L   G L   +    +   + + YF+  S +   EDDH+PF  R
Sbjct: 253 LERAGHLERYSYSSVAPNQQTIRYFQPHSYYAYIEDDHIPFLQR 296

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785963|gb|EFZ12579.1| hypothetical protein SINV_02605 [Solenopsis invicta]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 100/155 (64%), Gaps = 2/155 (1%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHL 64
           FIGATDSAVPCA L+ +A +M + L++  Q++ L LIFFDGEEAF EW   DSI+GA+HL
Sbjct: 148 FIGATDSAVPCAQLINLATIMNKYLNK-QQDVSLMLIFFDGEEAFEEWGPHDSIYGAKHL 206

Query: 65  AAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLT 124
           A +W      + G+  ++LDRMD+LVLLDL+G  +P FY+Y+  T KWY  LV IE  L 
Sbjct: 207 AKQWHNKKNVYGGENFSELDRMDVLVLLDLIGAPDPTFYNYFKNTEKWYSLLVSIEKELA 266

Query: 125 AQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
                   +  R ++  YF+  S     EDDH+PF
Sbjct: 267 QMRKFESYSYGRPEQ-KYFQPYSFEAHIEDDHIPF 300

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465727|gb|AEO32708.1| hypothetical protein [Amblyomma maculatum]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 13/166 (7%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ---NLGLDLIFFDGEEAFNEWSAEDSIWGA 61
           F+GATDSAVPCA L+Y+A ++  +L +  +    + L LIFFDGEEAF  WS+ DS++G+
Sbjct: 195 FLGATDSAVPCAQLIYLASVLNDKLKEQKRRGDGITLQLIFFDGEEAFVRWSSSDSLYGS 254

Query: 62  RHLAAKWERSHLQH--------RGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWY 113
           RHLA+ W R+  Q         R    T++DRM++LVLLDLLG +NPRFYSY+  T   Y
Sbjct: 255 RHLASMWHRNSTQSLLLEGCLPRSDIATQIDRMEVLVLLDLLGAANPRFYSYFVDTRLVY 314

Query: 114 KQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
            + V IESRL   G   M  S    +  YF   S   + EDDH+PF
Sbjct: 315 DRFVEIESRLNDMG--AMETSCSRCRTNYFVNSSQLALIEDDHIPF 358

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195495857|ref|XP_002095446.1| GE19688 [Drosophila yakuba] gi|194181547|gb|EDW95158.1| GE19688 [Drosophila yakuba]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 108/165 (65%), Gaps = 18/165 (10%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN-LGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           F+GATDSAVPCAMLL +A+++++ L +L +N L L L+FFDGEEAF EW  +DSI+GARH
Sbjct: 146 FLGATDSAVPCAMLLNLAQVLQEPLKELKKNKLSLMLLFFDGEEAFEEWGPKDSIYGARH 205

Query: 64  LAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           LA KW     QH GK    LDR+DMLVLLDLLG  +P FYS++  T  WY +L  +E+RL
Sbjct: 206 LAKKW-----QHEGK----LDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRLQSVETRL 256

Query: 124 TAQGLLNMVNSN---RSKKLTYFREM---STFPVAEDDHLPFYYR 162
               LL    S+   +     YF+     S+F   EDDH+PF  R
Sbjct: 257 ARFQLLERYASSGVAQRDPTRYFQSQAMRSSF--IEDDHIPFLRR 299

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089521|ref|XP_970809.1| PREDICTED: similar to glutaminyl-peptide cyclotransferase [Tribolium castaneum]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 7/159 (4%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN-LGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           F+GA DSAVPCAM+L IA+ + +EL ++  + +GL  IFFDGEEAF EW   DSIWGA+H
Sbjct: 136 FVGAIDSAVPCAMMLEIAKTLSKELGRIKDSPVGLKFIFFDGEEAFEEWGPNDSIWGAKH 195

Query: 64  LAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           LA     +     G+ +T+LD+MD+LVLLDL+G  NP+F +++  T +W+ +L  IE  L
Sbjct: 196 LAQVLHANTSTANGEIVTELDKMDVLVLLDLIGMKNPKFLNFFENTQRWFVRLSQIEIEL 255

Query: 124 TAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
               LL      R+ K  YF+    +   EDDHLPF  R
Sbjct: 256 HRMNLL------RNHKQGYFQSSRPYGRIEDDHLPFLRR 288

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0036999	354	isoQC "iso Glutaminyl cyclase"	0.919	0.420	0.423	1.9e-26
UNIPROTKB|Q4R942	382	QPCTL "Glutaminyl-peptide cycl	0.950	0.403	0.396	1.4e-25
UNIPROTKB|Q9NXS2	382	QPCTL "Glutaminyl-peptide cycl	0.950	0.403	0.396	1.8e-25
UNIPROTKB|Q0V8G3	383	QPCTL "Glutaminyl-peptide cycl	0.950	0.402	0.390	9.7e-25
MGI|MGI:1917786	362	Qpct "glutaminyl-peptide cyclo	0.932	0.417	0.385	9.7e-25
RGD|1562284	313	RGD1562284 "similar to Glutami	0.932	0.482	0.385	1.2e-24
UNIPROTKB|D4A1C7	362	RGD1562284 "Protein RGD1562284	0.932	0.417	0.385	1.2e-24
UNIPROTKB|E2RIL6	405	QPCTL "Uncharacterized protein	0.938	0.375	0.388	2.6e-24
UNIPROTKB|B5MCZ9	284	QPCT "Glutaminyl-peptide cyclo	0.950	0.542	0.390	2.6e-24
UNIPROTKB|Q16769	361	QPCT "Glutaminyl-peptide cyclo	0.950	0.426	0.390	2.6e-24

FB|FBgn0036999 isoQC "iso Glutaminyl cyclase" [Drosophila melanogaster (taxid:7227)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 69/163 (42%), Positives = 95/163 (58%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQN-LGLDLIFFDGEEAFNEWSAEDSIWGARH 63
             F+GATDSAVPCAMLL +A++++++L  L ++ L L L+FFDGEEAF EW  +DSI+GARH
Sbjct:   148 FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARH 207

Query:    64 LAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
             LA KW   H  H GK L +             G  +P FYS++  T  WY ++  +E+RL
Sbjct:   208 LAKKW---H--HEGK-LDRIDMLVLLDLL---GAPDPAFYSFFENTESWYMRIQSVETRL 258

Query:   124 TAQGLLNMVNSN---RSKKLTYFREMST-FPVAEDDHLPFYYR 162
                 LL    S+   +     YF+  +      EDDH+PF  R
Sbjct:   259 AKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRR 301

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=ISS;IDA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q4R942 QPCTL "Glutaminyl-peptide cyclotransferase-like protein" [Macaca fascicularis (taxid:9541)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 65/164 (39%), Positives = 94/164 (57%)

Query:     2 ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLG---LDLIFFDGEEAFNEWSAEDSI 58
             ++PF+GATDSAVPCA+LL +A+ +  ELS+  +      L L+F DGEEA  EW  +DS+
Sbjct:   178 STPFVGATDSAVPCALLLELAQALDLELSRAKEQAAPVTLQLLFLDGEEALKEWGPKDSL 237

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA   E   + H     T+             G  NP FYS++P T +W+ +L  
Sbjct:   238 YGSRHLAQLMES--IPHSPGP-TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 294

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
             IE RL     LN++ S+  +++ YF+    F   EDDH+PF  R
Sbjct:   295 IEKRLHR---LNLLQSH-PQEVMYFQPGEPFGSVEDDHIPFLRR 334

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=ISS

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=ISS

UNIPROTKB|Q9NXS2 QPCTL "Glutaminyl-peptide cyclotransferase-like protein" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/164 (39%), Positives = 94/164 (57%)

Query:     2 ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLG---LDLIFFDGEEAFNEWSAEDSI 58
             ++PF+GATDSAVPCA+LL +A+ +  ELS+  +      L L+F DGEEA  EW  +DS+
Sbjct:   178 STPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSL 237

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA   E   + H     T+             G  NP FYS++P T +W+ +L  
Sbjct:   238 YGSRHLAQLMES--IPHSPGP-TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 294

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
             IE RL     LN++ S+  +++ YF+    F   EDDH+PF  R
Sbjct:   295 IEKRLHR---LNLLQSH-PQEVMYFQPGEPFGSVEDDHIPFLRR 334

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=IDA

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q0V8G3 QPCTL "Glutaminyl-peptide cyclotransferase-like protein" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 64/164 (39%), Positives = 94/164 (57%)

Query:     2 ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSI 58
             ++PF+GATDSAVPC++LL +A+ + QEL +  +    + L LIF DGEEA  +W  +DS+
Sbjct:   179 SAPFVGATDSAVPCSLLLELAQALDQELGKAKERAAPMTLQLIFLDGEEALKQWGPKDSL 238

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA   E +   H G   T+             G  NP FYS++P T +W+ +L  
Sbjct:   239 YGSRHLAQLMEST--PH-GLGSTRIQAIELFMLLDLLGAPNPTFYSHFPRTARWFHRLRS 295

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
             IE RL     LN++ S+   ++ YF+        EDDH+PF  R
Sbjct:   296 IEKRLHR---LNLLQSH-PWEVMYFQTGEPPGSVEDDHIPFLRR 335

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1917786 Qpct "glutaminyl-peptide cyclotransferase (glutaminyl cyclase)" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/161 (38%), Positives = 89/161 (55%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
             F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF+ WS +DS+
Sbjct:   155 FVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLRLIFFDGEEAFHHWSPQDSL 214

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA K   S      +   +             G +NP F +++P T +W+ +L  
Sbjct:   215 YGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQA 274

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
             IE  L   GLL     + S +  YF+      + +DDH+PF
Sbjct:   275 IEKELYELGLLK----DHSLERKYFQNFGYGNIIQDDHIPF 311

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1562284 RGD1562284 "similar to Glutaminyl-peptide cyclotransferase precursor (QC)" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/161 (38%), Positives = 90/161 (55%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
             F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct:   106 FVGATDSAVPCAMMLELARALDKKLHSLKDVSGSRPDLSLRLIFFDGEEAFLHWSPQDSL 165

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA K   S      +   +             G +NP F +++P T +W+ +L  
Sbjct:   166 YGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFTRLQA 225

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
             IE +L+  GLL     + S +  YF+      + +DDH+PF
Sbjct:   226 IEQQLSELGLLK----DHSLERKYFQNFGYGNIIQDDHIPF 262

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=IEA

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=IEA

UNIPROTKB|D4A1C7 RGD1562284 "Protein RGD1562284" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/161 (38%), Positives = 90/161 (55%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
             F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct:   155 FVGATDSAVPCAMMLELARALDKKLHSLKDVSGSRPDLSLRLIFFDGEEAFLHWSPQDSL 214

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLA K   S      +   +             G +NP F +++P T +W+ +L  
Sbjct:   215 YGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFTRLQA 274

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
             IE +L+  GLL     + S +  YF+      + +DDH+PF
Sbjct:   275 IEQQLSELGLLK----DHSLERKYFQNFGYGNIIQDDHIPF 311

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|E2RIL6 QPCTL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 63/162 (38%), Positives = 89/162 (54%)

Query:     4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWG 60
             PF+GATDSAVPCA+LL +A+ + +ELS+  +    + L L+F DGEEA  EW   DS++G
Sbjct:   203 PFVGATDSAVPCALLLELAQALDRELSRAKEQEAPVTLQLLFLDGEEALKEWGPTDSLYG 262

Query:    61 ARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVGIE 120
             +RHLA   E +   H     T+             G  NP FYS++P T +W+ +L  IE
Sbjct:   263 SRHLAQLMESA--PHSPGP-TRIQAIELFMLLDLLGAPNPNFYSHFPHTARWFHRLRSIE 319

Query:   121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
              RL    LL     +  +++ YF+        EDDH+PF  R
Sbjct:   320 KRLHRMNLLQ----SHPQEVMYFQPGEPPGSVEDDHIPFLRR 357

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=IEA

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|B5MCZ9 QPCT "Glutaminyl-peptide cyclotransferase" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/164 (39%), Positives = 92/164 (56%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
             F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct:   105 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 164

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct:   165 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 224

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
             IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct:   225 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 264

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|Q16769 QPCT "Glutaminyl-peptide cyclotransferase" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/164 (39%), Positives = 92/164 (56%)

Query:     5 FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
             F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct:   154 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 213

Query:    59 WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
             +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct:   214 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 273

Query:   119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
             IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct:   274 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 313

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016603 "glutaminyl-peptide cyclotransferase activity" evidence=IDA

GO:0017186 "peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
cd03880	304	cd03880, M28_QC_like, M28 Zn-Peptidase Glutaminyl	1e-70
pfam04389	173	pfam04389, Peptidase_M28, Peptidase family M28	2e-20
cd08656	281	cd08656, M28_like_6, M28 Zn-Peptidases	9e-09
cd02690	252	cd02690, M28, M28 Zn-peptidases include aminopepti	1e-08

>gnl|CDD|193501 cd03880, M28_QC_like, M28 Zn-Peptidase Glutaminyl Cyclase

 Score =  214 bits (548), Expect = 1e-70
 Identities = 88/164 (53%), Positives = 107/164 (65%), Gaps = 10/164 (6%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQ------LNQNLGLDLIFFDGEEAFNEWSAEDSI 58
           FIGATDSAVPCAMLLY+AR +   L++         +LGL LIFFDGEEAF EWS  DS+
Sbjct: 100 FIGATDSAVPCAMLLYLARALDAALTRKWTDGIKESDLGLQLIFFDGEEAFKEWSDTDSL 159

Query: 59  WGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA KWE +      +   +LDR+D+ VLLDLLG  NP F SY+P TH WYK+L  
Sbjct: 160 YGSRHLAEKWESTPYPPNSEYSGELDRIDLFVLLDLLGAPNPTFPSYFPNTHWWYKRLAA 219

Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE RL   GLL   +S RS    YF+  S +   EDDH+PF  R
Sbjct: 220 IEKRLRKLGLLESHSSERS----YFQPSSKYGGIEDDHIPFLRR 259

Peptidase M28 family; Glutaminyl Cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to the receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease. Length = 304

>gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28

 Score = 82.3 bits (204), Expect = 2e-20
 Identities = 31/160 (19%), Positives = 50/160 (31%), Gaps = 32/160 (20%)

Query: 3   SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGAR 62
               GATD+A   A LL +AR++  +  +  +   +  +FFD E        ED + G+R
Sbjct: 13  PIGPGATDNASGVAALLELARVLAAQGPRPKR--SVVFLFFDAE--------EDGLLGSR 62

Query: 63  HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
             A       L H       L ++  ++ LD++G+  P                      
Sbjct: 63  AFAE------LPH-----PPLKKIRAVINLDMIGSGGPAVLFQDGGKLTSL--------- 102

Query: 123 LTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
              +             L              DH PF   
Sbjct: 103 --LEAYARAAAKPYGTTLGLDPFPEGGGDGRSDHAPFLGA 140

Length = 173

>gnl|CDD|193569 cd08656, M28_like_6, M28 Zn-Peptidases

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 39/163 (23%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSAEDSIW--G 60
           P  GA D A   A+LL +AR+    LS+L  ++G+D++FFDGE+  F E   ++  W  G
Sbjct: 96  PIDGANDGASGVAVLLELARV----LSKLKPDVGVDIVFFDGEDYGFPEGDGDNDSWCLG 151

Query: 61  ARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIE 120
           +++ A      H+           + +  +LLD++G  + +FY                E
Sbjct: 152 SQYWAKNP---HVSGY--------KAEYGILLDMVGDKDAQFY---------------KE 185

Query: 121 --SRLTAQGLLNMVNSNRSKKL--TYFREMSTFPVAEDDHLPF 159
             S   A  L+  V S  +KKL    F          DDHLP 
Sbjct: 186 GYSLRYAPSLVKKVWST-AKKLGYGAFF-PEAGGEITDDHLPV 226

Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. Length = 281

>gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 3   SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGAR 62
               GA D+A   A+LL +AR     LS+L  +  +  +FF  EE            G++
Sbjct: 83  GTAPGADDNASGVAVLLELAR----VLSKLPLDRTIRFVFFGAEEVGLL--------GSK 130

Query: 63  HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
           + A              L  +  +   + LD++G      Y +  P +     L+   +R
Sbjct: 131 YYAE-------DLSSYELENIVAV---INLDMVGGGGDPLYVHAAPGNDD---LLLKLAR 177

Query: 123 LTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
                L                     P    DH PF
Sbjct: 178 ALGHKLGTG----------DPVVSPGGPG--SDHEPF 202

Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are the glutaminyl cyclases (QC) which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases. Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG3946|consensus	338		100.0
PF04389	179	Peptidase_M28: Peptidase family M28; InterPro: IPR	99.89
PRK10199	346	alkaline phosphatase isozyme conversion aminopepti	99.81
COG2234	435	Iap Predicted aminopeptidases [General function pr	99.75
KOG2195|consensus	702		99.26
KOG2194|consensus	834		99.09
PF05450	234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	98.91
KOG2526|consensus	555		98.03
COG4882	486	Predicted aminopeptidase, Iap family [General func	97.79
PF09940	386	DUF2172: Domain of unknown function (DUF2172); Int	97.72
TIGR03176	406	AllC allantoate amidohydrolase. This enzyme cataly	97.48
PRK09961	344	exoaminopeptidase; Provisional	97.2
TIGR01910	375	DapE-ArgE acetylornithine deacetylase or succinyl-	97.19
TIGR01879	401	hydantase amidase, hydantoinase/carbamoylase famil	97.15
PRK13590	591	putative bifunctional OHCU decarboxylase/allantoat	97.04
PF05343	292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	97.02
PF01546	189	Peptidase_M20: Peptidase family M20/M25/M40 This f	97.0
PRK06133	410	glutamate carboxypeptidase; Reviewed	96.99
PRK12890	414	allantoate amidohydrolase; Reviewed	96.92
TIGR03107	350	glu_aminopep glutamyl aminopeptidase. This model r	96.73
PRK08588	377	succinyl-diaminopimelate desuccinylase; Reviewed	96.68
PRK13799	591	unknown domain/N-carbamoyl-L-amino acid hydrolase	96.65
PRK07906	426	hypothetical protein; Provisional	96.48
TIGR01883	361	PepT-like peptidase T-like protein. This model rep	96.27
COG1363	355	FrvX Cellulase M and related proteins [Carbohydrat	96.22
PRK08262	486	hypothetical protein; Provisional	96.19
TIGR01893	477	aa-his-dipept aminoacyl-histidine dipeptidase.	96.16
PRK08652	347	acetylornithine deacetylase; Provisional	96.14
PRK13983	400	diaminopimelate aminotransferase; Provisional	96.09
PRK09133	472	hypothetical protein; Provisional	96.08
TIGR01892	364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	96.08
PRK08651	394	succinyl-diaminopimelate desuccinylase; Reviewed	96.06
PRK08596	421	acetylornithine deacetylase; Validated	96.06
PRK08554	438	peptidase; Reviewed	95.89
PRK12891	414	allantoate amidohydrolase; Reviewed	95.85
TIGR01880	400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	95.85
PRK07522	385	acetylornithine deacetylase; Provisional	95.73
PRK13009	375	succinyl-diaminopimelate desuccinylase; Reviewed	95.59
PRK07473	376	carboxypeptidase; Provisional	95.53
PRK09864	356	putative peptidase; Provisional	95.44
PRK06156	520	hypothetical protein; Provisional	95.33
PRK07318	466	dipeptidase PepV; Reviewed	95.3
PRK09104	464	hypothetical protein; Validated	95.29
PRK05111	383	acetylornithine deacetylase; Provisional	95.24
PRK00466	346	acetyl-lysine deacetylase; Validated	95.2
PRK12892	412	allantoate amidohydrolase; Reviewed	95.03
PRK13007	352	succinyl-diaminopimelate desuccinylase; Reviewed	95.0
TIGR01902	336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	94.95
PRK07907	449	hypothetical protein; Provisional	94.9
PRK06446	436	hypothetical protein; Provisional	94.88
PRK12893	412	allantoate amidohydrolase; Reviewed	94.87
PRK07338	402	hypothetical protein; Provisional	94.79
PRK09290	413	allantoate amidohydrolase; Reviewed	94.5
PRK13381	404	peptidase T; Provisional	94.44
TIGR01886	466	dipeptidase dipeptidase PepV. This model represent	94.42
TIGR01891	363	amidohydrolases amidohydrolase. This model represe	94.42
PRK13013	427	succinyl-diaminopimelate desuccinylase; Reviewed	94.24
COG4310	435	Uncharacterized protein conserved in bacteria with	94.1
TIGR01887	447	dipeptidaselike dipeptidase, putative. This model	94.0
TIGR01882	410	peptidase-T peptidase T. This model represents a t	93.92
TIGR01246	370	dapE_proteo succinyl-diaminopimelate desuccinylase	93.83
PRK07079	469	hypothetical protein; Provisional	93.66
PRK07205	444	hypothetical protein; Provisional	93.53
PRK04443	348	acetyl-lysine deacetylase; Provisional	93.38
PRK08201	456	hypothetical protein; Provisional	93.32
PRK13004	399	peptidase; Reviewed	93.31
PRK15026	485	aminoacyl-histidine dipeptidase; Provisional	93.11
TIGR01900	373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	93.01
PRK06915	422	acetylornithine deacetylase; Validated	92.87
PRK05469	408	peptidase T; Provisional	92.77
PRK06837	427	acetylornithine deacetylase; Provisional	92.05
KOG2657|consensus	596		92.01
KOG2275|consensus	420		91.28
PRK02256	462	putative aminopeptidase 1; Provisional	90.0
PLN02280	478	IAA-amino acid hydrolase	89.15
TIGR03106	343	trio_M42_hydro hydrolase, peptidase M42 family. Th	88.24
PF04114	504	Gaa1: Gaa1-like, GPI transamidase component ; Inte	86.6
PRK08737	364	acetylornithine deacetylase; Provisional	82.92
PLN02693	437	IAA-amino acid hydrolase	82.01

>KOG3946|consensus

Probab=100.00  E-value=5.9e-43  Score=291.00  Aligned_cols=156  Identities=49%  Similarity=0.848  Sum_probs=139.6

Q ss_pred             CCCccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcc
Q psy571            2 ASPFIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKT   79 (162)
Q Consensus         2 ~~~f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~   79 (162)
                      +..|+||+|+|++||+||++|++|.+.+..  ..++.++++|||||||||.+|+++|++|||||+|++|.+- ++...+.
T Consensus       133 ~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~sw-~~~~~r~  211 (338)
T KOG3946|consen  133 GGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWESW-PHSGIRG  211 (338)
T ss_pred             CcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHhcc-CCCCCcc
Confidence            345899999999999999999999997763  4678999999999999999999999999999999999884 3333344


Q ss_pred             cccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCcccc
Q psy571           80 LTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF  159 (162)
Q Consensus        80 ~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH~PF  159 (162)
                      ...+++|+.+|++|++|++||.|++.++.|..||.++.+||.+|+.+|+++++..    +..||+++..++.|+|||+||
T Consensus       212 ~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l~~~g~l~s~r~----~~~~Fq~~~~~~~veDDHiPF  287 (338)
T KOG3946|consen  212 DLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGELALLGLLASHRL----PPRYFQPGGLSSVVEDDHIPF  287 (338)
T ss_pred             ccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHHHHHHHHHhccC----CchhccccCccccccCCcchh
Confidence            5789999999999999999999999999999999999999999999999988752    458999987788999999999


Q ss_pred             cCC
Q psy571          160 YYR  162 (162)
Q Consensus       160 ~~r  162 (162)
                      ++|
T Consensus       288 lrr  290 (338)
T KOG3946|consen  288 LRR  290 (338)
T ss_pred             hhc
Confidence            987

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.89  E-value=2e-23  Score=161.73  Aligned_cols=82  Identities=32%  Similarity=0.528  Sum_probs=70.1

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      ..++||+|||||||+|||+||.|+...  .+++++|+||||+|||        .|++||++|+++..           ..
T Consensus        19 ~~~~GA~DnasGva~lLelAr~l~~~~--~~~~~~i~fv~~~~EE--------~gl~GS~~~~~~~~-----------~~   77 (179)
T PF04389_consen   19 SWSPGANDNASGVAALLELARVLKELK--PQPKRTIRFVFFDGEE--------QGLLGSRAFVEHDH-----------EE   77 (179)
T ss_dssp             CSSS-TTTTHHHHHHHHHHHHHHHHST--HSSSEEEEEEEESSGG--------GTSHHHHHHHHHHH-----------CH
T ss_pred             cccCCcccchHHHHHHHHHHHHHHHhh--cccCccEEEEEecccc--------cCccchHHHHHhhh-----------cc
Confidence            478999999999999999999999831  4668999999999999        89999999998421           36


Q ss_pred             ccceeeEEEeccCCCCCCccccc
Q psy571           83 LDRMDMLVLLDLLGTSNPRFYSY  105 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~~~~~~  105 (162)
                      +++|.++|||||+|..++.+...
T Consensus        78 ~~~~~~~inlD~~g~~~~~~~~~  100 (179)
T PF04389_consen   78 LDNIAAVINLDMIGSGDPTVYSE  100 (179)
T ss_dssp             HHHEEEEEEECSSBSSSSEEEEE
T ss_pred             cccceeEEeccccccCcccceee
Confidence            78999999999999998866654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional

Probab=99.81  E-value=1.3e-19  Score=156.08  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKL   83 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l   83 (162)
                      ..+||+|||||||+|||+||.|..    .+++++|.|++|++||        .|++||++|++.+..          .++
T Consensus       137 ~~~GA~DnasGvA~lLe~ar~l~~----~~~~~~I~fv~~~~EE--------~Gl~GS~~~~~~~~~----------~~~  194 (346)
T PRK10199        137 TLQGMDDNAAGLGVMLELAERLKN----VPTEYGIRFVATSGEE--------EGKLGAENLLKRMSD----------TEK  194 (346)
T ss_pred             ccCCccccHHHHHHHHHHHHHHhh----CCCCCcEEEEEECCcc--------cCcHHHHHHHHhcCc----------cch
Confidence            467999999999999999999986    4577899999999999        899999999976422          367


Q ss_pred             cceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCC-Cc-cccccccccCCCCCCccCcccccC
Q psy571           84 DRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSN-RS-KKLTYFREMSTFPVAEDDHLPFYY  161 (162)
Q Consensus        84 ~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~-~~-~~~~~F~~~~~~~~i~DDH~PF~~  161 (162)
                      ++|.++|||||++..+..+.....++......+  +..++.+++...+..-. .+ ++ ..|+   .+.+.++||.||.+
T Consensus       195 ~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~--~~d~~~~~a~~~g~~~~~~~~~~-~~~p---~g~~~rSDH~~F~~  268 (346)
T PRK10199        195 KNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKL--TRDRALAIARRHGIAATTNPGLN-KNYP---KGTGCCNDAEVFDK  268 (346)
T ss_pred             hcEEEEEEeccCCCCCceEEecCCCcHHHHhHH--HHHHHHHHHHHcCCccccCCCcc-cccc---CCCcCCcccHHHHh
Confidence            899999999999987765555555544322111  11223333333343210 00 11 1122   24578999999987


Q ss_pred             C
Q psy571          162 R  162 (162)
Q Consensus       162 r  162 (162)
                      +
T Consensus       269 ~  269 (346)
T PRK10199        269 A  269 (346)
T ss_pred             c
Confidence            4

>COG2234 Iap Predicted aminopeptidases [General function prediction only]

Probab=99.75  E-value=1.9e-18  Score=150.65  Aligned_cols=73  Identities=25%  Similarity=0.408  Sum_probs=64.8

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      .+||+|||||+|+|||+||.|+.    .+++++|+|++|++||        .||.||++|+.+...          ...+
T Consensus       223 ~~GA~DNasGva~llEiAr~l~~----~~p~~~v~f~~~~aEE--------~Gl~GS~~~~~~~~~----------~~~~  280 (435)
T COG2234         223 GPGADDNASGVAALLELARVLKG----NPPKRTVRFVAFGAEE--------SGLLGSEAYVKRLSK----------DLDK  280 (435)
T ss_pred             CCCcccccHHHHHHHHHHHHHhc----CCCCceEEEEEecchh--------hcccccHHHHhcCCc----------chhh
Confidence            48999999999999999999998    5699999999999999        899999999976432          2356


Q ss_pred             ceeeEEEeccCCCCC
Q psy571           85 RMDMLVLLDLLGTSN   99 (162)
Q Consensus        85 ~i~~~i~lDmvG~~~   99 (162)
                      .+.++||+||+|.++
T Consensus       281 ~~~~viN~Dm~g~~~  295 (435)
T COG2234         281 KIALVINLDMLGSPN  295 (435)
T ss_pred             hhheEEecccccCCC
Confidence            788899999999986

>KOG2195|consensus

Probab=99.26  E-value=2.5e-11  Score=112.89  Aligned_cols=81  Identities=20%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKL   83 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l   83 (162)
                      -.||.|.+||+|+|+||||.+...+++ .+|.|+|.|++|||||        -|+.||..+++.+.+.          --
T Consensus       365 ~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeE--------fGliGStE~~E~~~~~----------L~  426 (702)
T KOG2195|consen  365 TFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEE--------FGLLGSTEWAEEYLKN----------LK  426 (702)
T ss_pred             ccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchh--------ccccccHHHHHHHHHH----------hh
Confidence            368999999999999999999997665 6899999999999999        8999999999987664          23


Q ss_pred             cceeeEEEeccCCCCCCccc
Q psy571           84 DRMDMLVLLDLLGTSNPRFY  103 (162)
Q Consensus        84 ~~i~~~i~lDmvG~~~~~~~  103 (162)
                      .++.++||+|+++.+|..+.
T Consensus       427 ~~av~yin~d~~~~~~~~l~  446 (702)
T KOG2195|consen  427 SRAVVYINVDNAVLGDYTLH  446 (702)
T ss_pred             heeEEEEeccccccCCceeE
Confidence            57999999999999985444

>KOG2194|consensus

Probab=99.09  E-value=1.4e-10  Score=108.89  Aligned_cols=85  Identities=18%  Similarity=0.282  Sum_probs=68.5

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH--HHHhcccccCCcccc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA--KWERSHLQHRGKTLT   81 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~--~~~~~~~~~~~~~~~   81 (162)
                      +-+||+|++++||+|||++|.+.+.-  +...++|.|.|+++||        ++|.||..|+.  .|+            
T Consensus       157 t~~gAtDDg~~va~mLe~lRv~s~~~--~~l~~~vVFLfNgaEE--------~~L~gsH~FItQH~w~------------  214 (834)
T KOG2194|consen  157 TGPGATDDGSGVASMLEALRVLSKSD--KLLTHSVVFLFNGAEE--------SGLLGSHAFITQHPWS------------  214 (834)
T ss_pred             CCCCCCcchhHHHHHHHHHHHhhcCC--CcccccEEEEecCccc--------chhhhcccceecChhh------------
Confidence            45899999999999999999999841  3348999999999999        89999999996  444            


Q ss_pred             cccceeeEEEeccCCCCCCc-ccccCCCchHHH
Q psy571           82 KLDRMDMLVLLDLLGTSNPR-FYSYYPPTHKWY  113 (162)
Q Consensus        82 ~l~~i~~~i~lDmvG~~~~~-~~~~~~~t~~~~  113 (162)
                        ++|+++||||..|+.... +....++. |+.
T Consensus       215 --~~~ka~INLea~GsGGreiLFQagp~~-wl~  244 (834)
T KOG2194|consen  215 --KNIKAVINLEAAGSGGREILFQAGPNH-WLL  244 (834)
T ss_pred             --hhhheEEeccccCcccceeEEecCCch-HHH
Confidence              459999999999997653 33355553 543

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch

Probab=98.91  E-value=1.4e-08  Score=83.59  Aligned_cols=89  Identities=24%  Similarity=0.281  Sum_probs=72.1

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCc--cc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK--TL   80 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~--~~   80 (162)
                      .-+||+.++||..+||.+|++|.+.... ...++.|.|+||.||-        -+-.||+.|+.-+.+..-|....  ..
T Consensus        18 ~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs--------~dYiGS~R~vyDm~~~~f~~~~~~~~~   89 (234)
T PF05450_consen   18 LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGES--------FDYIGSSRFVYDMQNGNFPSDSLQFQP   89 (234)
T ss_pred             CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCcc--------ccccchHHHHHHHHcCcCccccccccc
Confidence            3589999999999999999999876332 4568999999999999        56789999999888765441111  23


Q ss_pred             ccccceeeEEEeccCCCCCC
Q psy571           81 TKLDRMDMLVLLDLLGTSNP  100 (162)
Q Consensus        81 ~~l~~i~~~i~lDmvG~~~~  100 (162)
                      ..+++|+.+|-|+.||....
T Consensus        90 i~~~~I~~~IElgqvg~~~~  109 (234)
T PF05450_consen   90 ISLDNIDSVIELGQVGLSNS  109 (234)
T ss_pred             ccHHHCCEEEEeeccCCCCC
Confidence            67889999999999998764

Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane

>KOG2526|consensus

Probab=98.03  E-value=1.6e-05  Score=70.83  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      -+||+-|+||+.+|||+||.+...-..  ..+++++.|+.-+|--        -...|++++-+--.+          .-
T Consensus       232 svgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~--------lNyqGTkkWLe~dd~----------~l  293 (555)
T KOG2526|consen  232 SVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGK--------LNYQGTKKWLEFDDA----------DL  293 (555)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCcc--------ccccchhhhhhcchH----------HH
Confidence            579999999999999999999985321  3568999999998877        345688765542211          11


Q ss_pred             ccceeeEEEeccCCCCCC
Q psy571           83 LDRMDMLVLLDLLGTSNP  100 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~  100 (162)
                      -++|+..|+||.||...-
T Consensus       294 q~nVdfaiCLdtig~~~s  311 (555)
T KOG2526|consen  294 QKNVDFAICLDTIGRKTS  311 (555)
T ss_pred             HhcccEEEEhhhhccccC
Confidence            248999999999999854

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]

Probab=97.79  E-value=2.9e-05  Score=68.03  Aligned_cols=76  Identities=22%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc-c---ccccCCCCCccchHHHHHHHHhcccccCCccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-A---FNEWSAEDSIWGARHLAAKWERSHLQHRGKTL   80 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE-~---~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~   80 (162)
                      |.|++||-.|+|.-.++++.|..      ....+-++.|++|| .   +..|   .+-.||+.|-+.|+.          
T Consensus       202 ~~G~tDN~lg~~~AV~~~~~lr~------~~~~~~lv~FtAEE~g~p~~~sf---yWa~GSr~~lk~~k~----------  262 (486)
T COG4882         202 YTGFTDNILGVAQAVETAGRLRG------RGLAAGLVVFTAEEHGMPGMASF---YWAAGSRGLLKESKA----------  262 (486)
T ss_pred             hhcccchhhhHHHHHHHHHHHhh------cCcceeEEEEeccccCCCCCcce---eecccchHHHhhcCC----------
Confidence            78999999999999999999976      34567899999999 2   2233   345799988877654          


Q ss_pred             ccccceeeEEEeccCCCCCCc
Q psy571           81 TKLDRMDMLVLLDLLGTSNPR  101 (162)
Q Consensus        81 ~~l~~i~~~i~lDmvG~~~~~  101 (162)
                        .++|.+.||+|.+|...+.
T Consensus       263 --~~~v~~~VN~Dv~g~~~lv  281 (486)
T COG4882         263 --AEEVEAYVNFDVAGYRCLV  281 (486)
T ss_pred             --chhhhheeccccccccchh
Confidence              4679999999999998774

>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis

Probab=97.72  E-value=0.00013  Score=63.98  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=48.0

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc-
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR-   85 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~-   85 (162)
                      -||||.||+|++.++|+.|..    .+...+.+|+|.            ....||-.+-++-.           ..+++ 
T Consensus       143 mANdnLSG~~v~~~La~~L~~----~~~rytYRflf~------------PeTIGsI~yLskn~-----------~~l~~~  195 (386)
T PF09940_consen  143 MANDNLSGPAVLTFLAKWLKQ----LPNRYTYRFLFV------------PETIGSITYLSKNL-----------DELKKN  195 (386)
T ss_dssp             -TTTTHHHHHHHHHHHHHHTT----S--SSEEEEEEE-------------TTHHHHHHHHH-G-----------GGGGG-
T ss_pred             cccccccHHHHHHHHHHHHhc----CCcCceEEEEEc------------cccHHHHHHHHHCH-----------HHHhhh
Confidence            399999999999999999998    455699999999            55679976654411           34566 


Q ss_pred             eeeEEEeccCCCCCC
Q psy571           86 MDMLVLLDLLGTSNP  100 (162)
Q Consensus        86 i~~~i~lDmvG~~~~  100 (162)
                      |++.++|.|||....
T Consensus       196 v~~G~vLtcvGD~~~  210 (386)
T PF09940_consen  196 VKAGLVLTCVGDDGA  210 (386)
T ss_dssp             EEEEEE--S--SSS-
T ss_pred             eeeeEEEEEecCCCC
Confidence            999999999999875

The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.

>TIGR03176 AllC allantoate amidohydrolase

Probab=97.48  E-value=0.00018  Score=63.11  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~   66 (162)
                      =|.-|++.||++.||++|.|...-  .+++++|.+|+|..||+  |.     .+++||+.++-
T Consensus        84 gG~~dg~~Gv~~~le~~~~l~~~~--~~~~~~i~vi~~~~EEg~rf~-----~~~~Gs~~~~g  139 (406)
T TIGR03176        84 GGNLDGQFGALAAWLAVDYLKEKY--GAPLRTVEVLSMAEEEGSRFP-----YVFWGSKNIFG  139 (406)
T ss_pred             CCccCchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEeccccCccCC-----cccccHHHHhC
Confidence            377899999999999999999742  36889999999999993  21     35999999983

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.

>PRK09961 exoaminopeptidase; Provisional

Probab=97.20  E-value=0.0007  Score=58.56  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      .|-||=+||++|||++|.++.    ++++..|.|+|++-||        -|+.|++..+..+                +.
T Consensus       163 kalDnR~g~~~lle~l~~l~~----~~~~~~v~~~~tvqEE--------vG~rGa~~aa~~i----------------~p  214 (344)
T PRK09961        163 KAFDDRLGCYLLVTLLRELHD----AELPAEVWLVASSSEE--------VGLRGGQTATRAV----------------SP  214 (344)
T ss_pred             eechhhHhHHHHHHHHHHhhh----cCCCceEEEEEEcccc--------cchHHHHHHHhcc----------------CC
Confidence            578999999999999999976    4567899999999999        8999998777442                23


Q ss_pred             eeEEEeccCCCCC
Q psy571           87 DMLVLLDLLGTSN   99 (162)
Q Consensus        87 ~~~i~lDmvG~~~   99 (162)
                      +..|.+|..-.++
T Consensus       215 d~~I~vDv~~~~d  227 (344)
T PRK09961        215 DVAIVLDTACWAK  227 (344)
T ss_pred             CEEEEEeccCCCC
Confidence            5678888775543

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Probab=97.19  E-value=0.001  Score=57.01  Aligned_cols=52  Identities=27%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-+|+|++|+.++.|...-  ..++..|.|+|..+||        .+..|++++++.
T Consensus       101 rG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~G~~~~~~~  152 (375)
T TIGR01910       101 RGATDMKGGLVALLYALKAIREAG--IKPNGNIILQSVVDEE--------SGEAGTLYLLQR  152 (375)
T ss_pred             cCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEEcCcc--------cCchhHHHHHHc
Confidence            489999999999999999997631  2457789999999999        566799988853

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family

Probab=97.15  E-value=0.0008  Score=58.53  Aligned_cols=53  Identities=17%  Similarity=0.405  Sum_probs=43.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~   66 (162)
                      |.-|+..|+|++|++++.|+..-  .+++..|.|++|..||.  |.     .+++||++++.
T Consensus        83 g~~dg~~gvaa~l~a~~~l~~~g--~~~~~~i~~~~~~dEE~~~f~-----~~~~Gs~~~~~  137 (401)
T TIGR01879        83 GNFDGQLGVLAGIEVVDALKEAY--VVPLHPIEVVAFTEEEGSRFP-----YGMWGSRNMVG  137 (401)
T ss_pred             CccCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCcCcCcc-----cccccHHHHhc
Confidence            67799999999999999998742  35788999999999992  11     37899999974

Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional

Probab=97.04  E-value=0.0012  Score=60.78  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA   65 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a   65 (162)
                      |.-|+..||+++||++|.|...-  .++++.|.||+|..||+  |.     .+++||+.++
T Consensus       267 G~~DG~~Gv~a~lea~~~l~~~~--~~~~~~i~vv~~~~EEg~rF~-----~~~~GS~~~~  320 (591)
T PRK13590        267 GKYDGRLGIFVPMACVRELHRQG--RRLPFGLEVVGFAEEEGQRYK-----ATFLGSGALI  320 (591)
T ss_pred             CCcccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCccccCC-----ccccchHHHh
Confidence            44799999999999999998741  25568999999999993  32     3689999865

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.02  E-value=0.00092  Score=56.73  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      |-||=+||++|||++|.|+.    .+.+..|.|+|-.-||        -|+.|++..|...
T Consensus       132 alDdR~g~~~lle~l~~l~~----~~~~~~v~~v~tvqEE--------vG~rGA~~aa~~i  180 (292)
T PF05343_consen  132 ALDDRAGCAVLLELLRELKE----KELDVDVYFVFTVQEE--------VGLRGAKTAAFRI  180 (292)
T ss_dssp             THHHHHHHHHHHHHHHHHTT----SS-SSEEEEEEESSCT--------TTSHHHHHHHHHH
T ss_pred             eCCchhHHHHHHHHHHHHhh----cCCCceEEEEEEeeee--------ecCcceeeccccc
Confidence            56899999999999999987    4556999999999999        8999999888664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.00  E-value=0.0022  Score=48.94  Aligned_cols=52  Identities=23%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCcc-chHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIW-GARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~-GS~~~a~~   67 (162)
                      .|++|+-.|++++|.+++.|.+..  .+++.+|.|+|...||        .+.. |++++++.
T Consensus        32 rG~~D~k~~~~~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~~g~~~l~~~   84 (189)
T PF01546_consen   32 RGADDMKGGIAAMLAALKALKESG--DDLPGNIIFLFTPDEE--------IGSIGGAKHLLEE   84 (189)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--TTCSSEEEEEEESTCC--------GTSTTHHHHHHHH
T ss_pred             CCcCCCcccHHHHHHHHHHHHhcc--cccccccccccccccc--------CCCcchhhhhhhh
Confidence            599999999999999999997532  5788999999999999        4444 99988865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....

>PRK06133 glutamate carboxypeptidase; Reviewed

Probab=96.99  E-value=0.0025  Score=55.65  Aligned_cols=53  Identities=25%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+-+|+|++|.+++.|....  .++..+|.|+|..+||        .+..|++++.+..
T Consensus       132 rG~~D~kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~G~~~~~~~~  184 (410)
T PRK06133        132 PGIADDKGGVAVILHALKILQQLG--FKDYGTLTVLFNPDEE--------TGSPGSRELIAEL  184 (410)
T ss_pred             CccccchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEECCcc--------cCCccHHHHHHHH
Confidence            588999999999999999997631  2355789999999999        5667999998664

>PRK12890 allantoate amidohydrolase; Reviewed

Probab=96.92  E-value=0.0013  Score=57.23  Aligned_cols=57  Identities=25%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      |+.|+.+|+|++|++++.|....  ..++.+|.|+++..||.- .+  .-+++||++++..+
T Consensus        90 g~~D~~~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~-~~--~~~~~G~~~~~~~~  146 (414)
T PRK12890         90 GRYDGILGVLAGLEVVAALREAG--IRPPHPLEVIAFTNEEGV-RF--GPSMIGSRALAGTL  146 (414)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEeccccc-cc--CCccccHHHHHccc
Confidence            67899999999999999998631  245789999999999920 00  01578999887643

>TIGR03107 glu_aminopep glutamyl aminopeptidase

Probab=96.73  E-value=0.0033  Score=54.73  Aligned_cols=63  Identities=19%  Similarity=0.102  Sum_probs=50.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      -|-||=+|||+|+|++|.|+.    ++++..|.++|-.-||        -|+-||+.-|...                +.
T Consensus       175 kalDdR~g~a~l~e~l~~l~~----~~~~~~l~~~~tvqEE--------vG~rGA~~aa~~i----------------~p  226 (350)
T TIGR03107       175 KAWDNRYGVLMILELLESLKD----QELPNTLIAGANVQEE--------VGLRGAHVSTTKF----------------NP  226 (350)
T ss_pred             eccccHHHHHHHHHHHHHhhh----cCCCceEEEEEEChhh--------cCchhhhhHHhhC----------------CC
Confidence            378999999999999999986    5677899999999999        8999999665442                23


Q ss_pred             eeEEEeccCCC
Q psy571           87 DMLVLLDLLGT   97 (162)
Q Consensus        87 ~~~i~lDmvG~   97 (162)
                      +..|.+|..-.
T Consensus       227 D~aI~vDv~~~  237 (350)
T TIGR03107       227 DIFFAVDCSPA  237 (350)
T ss_pred             CEEEEEecCCc
Confidence            57788886644

This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=96.68  E-value=0.0049  Score=52.77  Aligned_cols=52  Identities=29%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|..++.|...-  ..++.+|.|+|..+||        .+..|++++.+.
T Consensus        96 rG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~l~~~~dEE--------~g~~G~~~~~~~  147 (377)
T PRK08588         96 RGATDMKSGLAALVIAMIELKEQG--QLLNGTIRLLATAGEE--------VGELGAKQLTEK  147 (377)
T ss_pred             cCcccccchHHHHHHHHHHHHHcC--CCCCCcEEEEEEcccc--------cCchhHHHHHhc
Confidence            378899999999999999997631  2456799999999999        556799988854

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional

Probab=96.65  E-value=0.0033  Score=58.02  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=43.5

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA   65 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a   65 (162)
                      |-=|+..||++.|+++|.|...-  .++++.|.+|+|..||+  |.     .++.||+.++
T Consensus       267 G~~DG~~Gv~a~l~~~~~l~~~~--~~~~~~i~vi~~~~EEg~rF~-----~~~~GS~~~~  320 (591)
T PRK13799        267 GKYDGREGIFLAIACVKELHEQG--ERLPFHFEVIAFAEEEGQRFK-----ATFLGSGALI  320 (591)
T ss_pred             CccccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCCccCCC-----ccccchHHHh
Confidence            55699999999999999999742  36788999999999994  32     3789999998

>PRK07906 hypothetical protein; Provisional

Probab=96.48  E-value=0.0057  Score=53.40  Aligned_cols=54  Identities=28%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+-.|+|++|++++.|....  ..++.+|.|+|+..||.       .+..|++++++..
T Consensus       101 rG~~D~Kg~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~-------g~~~g~~~l~~~~  154 (426)
T PRK07906        101 RGAVDMKDMDAMMLAVVRHLARTG--RRPPRDLVFAFVADEEA-------GGTYGAHWLVDNH  154 (426)
T ss_pred             cCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEecCccc-------chhhhHHHHHHHH
Confidence            389999999999999999997631  35677999999999992       2467999998653

>TIGR01883 PepT-like peptidase T-like protein

Probab=96.27  E-value=0.007  Score=51.40  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=39.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      .|.-+|+|++|++++.|...   ..++.+|.|+|..+||        .+..|+++|.+
T Consensus        99 ~D~k~g~a~~l~~~~~l~~~---~~~~~~v~~~~~~~EE--------~g~~G~~~~~~  145 (361)
T TIGR01883        99 ADDKAGVAAMLEAMDVLSTE---ETPHGTIEFIFTVKEE--------LGLIGMRLFDE  145 (361)
T ss_pred             ccccHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccc--------cCchhHhHhCh
Confidence            67789999999999999763   3356789999999999        56779998875

This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]

Probab=96.22  E-value=0.015  Score=50.95  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |-||=.|||+|||++|.|+.    ..++..+-|+|---||        -|+-|++..+...                +-+
T Consensus       178 alDdR~gva~lle~lk~l~~----~~~~~~vy~v~tvqEE--------VGlrGA~~~a~~i----------------~pd  229 (355)
T COG1363         178 ALDDRAGVAALLELLKELKG----IELPADVYFVASVQEE--------VGLRGAKTSAFRI----------------KPD  229 (355)
T ss_pred             eccchHhHHHHHHHHHHhcc----CCCCceEEEEEecchh--------hccchhhcccccc----------------CCC
Confidence            67999999999999999952    5788899999999999        8999998776442                346


Q ss_pred             eEEEeccCCCCCC
Q psy571           88 MLVLLDLLGTSNP  100 (162)
Q Consensus        88 ~~i~lDmvG~~~~  100 (162)
                      +.|-+|..+..+.
T Consensus       230 ~aiavd~~~~~d~  242 (355)
T COG1363         230 IAIAVDVTPAGDT  242 (355)
T ss_pred             EEEEEecccccCC
Confidence            7788888877554

>PRK08262 hypothetical protein; Provisional

Probab=96.19  E-value=0.012  Score=52.57  Aligned_cols=54  Identities=24%  Similarity=0.196  Sum_probs=45.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER   70 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~   70 (162)
                      |+.|+=+|+|++|..++.|.+..  ..++.+|.|+|..+||        .+..|++++++.+..
T Consensus       151 G~~D~Kg~~aa~L~A~~~l~~~~--~~l~~~I~llf~~dEE--------~g~~G~~~l~~~l~~  204 (486)
T PRK08262        151 GALDDKGSLVAILEAAEALLAQG--FQPRRTIYLAFGHDEE--------VGGLGARAIAELLKE  204 (486)
T ss_pred             CccccchhHHHHHHHHHHHHHcC--CCCCCeEEEEEecccc--------cCCcCHHHHHHHHHH
Confidence            99999999999999999998631  2466799999999999        555699999977654

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase

Probab=96.16  E-value=0.0067  Score=54.12  Aligned_cols=45  Identities=31%  Similarity=0.364  Sum_probs=36.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571           10 DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus        10 DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      |+..|||++|++++.  .    ..+...|.++|+..||        .++.||++++..+
T Consensus       109 D~k~gva~~l~~~~~--~----~~~~~~i~~~~~~dEE--------~g~~Gs~~l~~~~  153 (477)
T TIGR01893       109 DNGIGVAMGLAILED--N----NLKHPPLELLFTVDEE--------TGMDGALGLDENW  153 (477)
T ss_pred             cccHHHHHHHHHHhc--C----CCCCCCEEEEEEeccc--------cCchhhhhcChhh
Confidence            889999999998775  1    2334589999999999        6888999997543

>PRK08652 acetylornithine deacetylase; Provisional

Probab=96.14  E-value=0.0096  Score=50.05  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=42.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+=+|+|++|.+++.|..    ..++.+|.|+|..+||        .+..|++++.+.+
T Consensus        83 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~v~~~~~~dEE--------~g~~G~~~~~~~~  133 (347)
T PRK08652         83 TGACDAKGGVAAILLALEELGK----EFEDLNVGIAFVSDEE--------EGGRGSALFAERY  133 (347)
T ss_pred             ccchhhhHHHHHHHHHHHHHhh----cccCCCEEEEEecCcc--------cCChhHHHHHHhc
Confidence            4899999999999999999975    3345689999999999        5557999887653

>PRK13983 diaminopimelate aminotransferase; Provisional

Probab=96.09  E-value=0.018  Score=49.27  Aligned_cols=52  Identities=21%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|..++.|...-  .+++.+|.|+|..+||        .+. .|++++++.
T Consensus       113 rG~~D~K~g~~a~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~~g~~~~~~~  165 (400)
T PRK13983        113 RGSEDNGQGIVSSLLALKALMDLG--IRPKYNLGLAFVSDEE--------TGSKYGIQYLLKK  165 (400)
T ss_pred             cCccCccchHHHHHHHHHHHHHhC--CCCCCcEEEEEEeccc--------cCCcccHHHHHhh
Confidence            479999999999999999997631  2567799999999999        333 588888865

>PRK09133 hypothetical protein; Provisional

Probab=96.08  E-value=0.023  Score=50.50  Aligned_cols=55  Identities=18%  Similarity=0.227  Sum_probs=44.7

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE   69 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~   69 (162)
                      .|+.|+-+|+|++|++++.|...-  ..++.+|.|+|...||.       .+..|++++.+...
T Consensus       137 RGa~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~-------~g~~G~~~l~~~~~  191 (472)
T PRK09133        137 RGTSDDKADAAIWVATLIRLKREG--FKPKRDIILALTGDEEG-------TPMNGVAWLAENHR  191 (472)
T ss_pred             cCcccchHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECcccc-------CccchHHHHHHHHh
Confidence            499999999999999999997631  24677999999999992       35689999987643

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)

Probab=96.08  E-value=0.014  Score=49.34  Aligned_cols=51  Identities=22%  Similarity=0.044  Sum_probs=43.0

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+=+|+|++|.+++.|.+    .+.+.+|.|+|..+||        .+..|++++++..
T Consensus        94 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~v~~~~~~~EE--------~g~~G~~~~~~~~  144 (364)
T TIGR01892        94 RGTCDMKGFLACALAAAPDLAA----EQLKKPLHLALTADEE--------VGCTGAPKMIEAG  144 (364)
T ss_pred             cCccccchHHHHHHHHHHHHHh----cCcCCCEEEEEEeccc--------cCCcCHHHHHHhc
Confidence            3799999999999999999976    2346689999999999        5667999998664

This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=96.06  E-value=0.013  Score=50.40  Aligned_cols=49  Identities=22%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|+.++.|..    .. +.+|.|+|..+||        .+..|++++++.
T Consensus       110 rG~~D~k~~~~~~l~a~~~l~~----~~-~~~v~~~~~~~EE--------~g~~G~~~~~~~  158 (394)
T PRK08651        110 RGASDMKGGIAALLAAFERLDP----AG-DGNIELAIVPDEE--------TGGTGTGYLVEE  158 (394)
T ss_pred             cCccccchHHHHHHHHHHHHHh----cC-CCCEEEEEecCcc--------ccchhHHHHHhc
Confidence            4889999999999999999976    23 6899999999999        555799988864

>PRK08596 acetylornithine deacetylase; Validated

Probab=96.06  E-value=0.013  Score=51.32  Aligned_cols=52  Identities=21%  Similarity=0.122  Sum_probs=43.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+=+|+|++|..++.|...-  .+++.+|.|+|..+||        .+..|++++++.
T Consensus       114 rG~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~G~~~~~~~  165 (421)
T PRK08596        114 RGAADMKGGLAGALFAIQLLHEAG--IELPGDLIFQSVIGEE--------VGEAGTLQCCER  165 (421)
T ss_pred             ccccccchHHHHHHHHHHHHHHcC--CCCCCcEEEEEEeccc--------cCCcCHHHHHhc
Confidence            589999999999999999997631  2457789999999999        566799988754

>PRK08554 peptidase; Reviewed

Probab=95.89  E-value=0.033  Score=49.45  Aligned_cols=52  Identities=21%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE   69 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~   69 (162)
                      .|+.|.-+|+|++|..++.|..    ..++.+|.|+|...||        .+..|++++.+.+.
T Consensus        99 rG~~DmKgg~aa~l~A~~~l~~----~~~~~~i~l~~~~dEE--------~g~~~~~~~~~~~~  150 (438)
T PRK08554         99 RGSADDKGNVASVMLALKELSK----EPLNGKVIFAFTGDEE--------IGGAMAMHIAEKLR  150 (438)
T ss_pred             CCcccchHHHHHHHHHHHHHHh----cCCCCCEEEEEEcccc--------cCccccHHHHHHHH
Confidence            5999999999999999999976    2356789999999999        44445667776553

>PRK12891 allantoate amidohydrolase; Reviewed

Probab=95.85  E-value=0.016  Score=50.74  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA   65 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a   65 (162)
                      |.-|+.+|+|++|++++.|...-  .++..+|.|+++..||.  |.     .++.||++++
T Consensus        92 g~~D~k~Gv~a~l~a~~~l~~~~--~~~~~~i~v~~~~dEE~~~f~-----~~~~Gs~~~~  145 (414)
T PRK12891         92 GRYDGIYGVLGGLEVVRALNDAG--IETERPVDVVIWTNEEGSRFA-----PSMVGSGVFF  145 (414)
T ss_pred             ccccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEecccccCcCC-----cccccHHHHh
Confidence            55799999999999999998741  35678999999999992  11     2467998774

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase

Probab=95.85  E-value=0.027  Score=48.69  Aligned_cols=52  Identities=19%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~~   67 (162)
                      .|+.|.=+|+|++|.+++.|....  .+++.+|.|+|...||        .+ ..|++++.+.
T Consensus       108 rG~~D~K~~~aa~l~a~~~l~~~~--~~~~~~v~l~~~~dEE--------~g~~~G~~~~~~~  160 (400)
T TIGR01880       108 RGAQDMKCVGVQYLEAVRNLKASG--FKFKRTIHISFVPDEE--------IGGHDGMEKFAKT  160 (400)
T ss_pred             cccccccHHHHHHHHHHHHHHHcC--CCCCceEEEEEeCCcc--------cCcHhHHHHHHHh
Confidence            388899999999999999997631  2456789999999999        43 5699988854

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.

>PRK07522 acetylornithine deacetylase; Provisional

Probab=95.73  E-value=0.027  Score=48.12  Aligned_cols=53  Identities=21%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER   70 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~   70 (162)
                      .|+.|.=.++|++|.+++.|..    .+.+.+|.|+|...||        .+..|++++.+...+
T Consensus       100 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~i~~~~~~dEE--------~g~~G~~~l~~~~~~  152 (385)
T PRK07522        100 RGTCDMKGFIAAALAAVPELAA----APLRRPLHLAFSYDEE--------VGCLGVPSMIARLPE  152 (385)
T ss_pred             ccccccchHHHHHHHHHHHHHh----CCCCCCEEEEEEeccc--------cCCccHHHHHHHhhh
Confidence            3788988999999999999976    3456789999999999        555799999876433

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=95.59  E-value=0.037  Score=47.16  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER   70 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~   70 (162)
                      |+.|+=.|+|++|..++.|....  .+++.+|.|+|..+||.       .+..|++++.+.+.+
T Consensus        96 G~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~-------~~~~G~~~~~~~~~~  150 (375)
T PRK13009         96 GAADMKGSLAAFVVAAERFVAAH--PDHKGSIAFLITSDEEG-------PAINGTVKVLEWLKA  150 (375)
T ss_pred             CCccChHHHHHHHHHHHHHHHhc--CCCCceEEEEEEeeccc-------ccccCHHHHHHHHHH
Confidence            88899999999999999887631  34567999999999992       245799999876544

>PRK07473 carboxypeptidase; Provisional

Probab=95.53  E-value=0.046  Score=47.30  Aligned_cols=52  Identities=19%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|.=+|+|++|..++.|....  .+.+..|.|+|...||        .+..|++++.+.
T Consensus       108 rG~~D~Kgglaa~l~A~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~g~~~~~~~  159 (376)
T PRK07473        108 PGILDMKGGNYLALEAIRQLARAG--ITTPLPITVLFTPDEE--------VGTPSTRDLIEA  159 (376)
T ss_pred             CchhhchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEeCCcc--------cCCccHHHHHHH
Confidence            489999999999999999997631  1345579999999999        567899988864

>PRK09864 putative peptidase; Provisional

Probab=95.44  E-value=0.029  Score=49.02  Aligned_cols=60  Identities=23%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      -|-||=+|||+|||++|.|+.      ++..|.|+|..-||        -|+-|++.-|....                .
T Consensus       172 kalDnR~g~~~lle~l~~l~~------~~~~vy~v~TvQEE--------vGlrGA~~aa~~i~----------------P  221 (356)
T PRK09864        172 KALDNRIGCAMMAELLQTVNN------PEITLYGVGSVEEE--------VGLRGAQTSAEHIK----------------P  221 (356)
T ss_pred             EeCccHHHHHHHHHHHHHhhc------CCCeEEEEEEcchh--------cchHHHHHHHhcCC----------------C
Confidence            377999999999999999953      56889999999999        89999987664421                2


Q ss_pred             eeEEEeccCC
Q psy571           87 DMLVLLDLLG   96 (162)
Q Consensus        87 ~~~i~lDmvG   96 (162)
                      +..|.+|+.-
T Consensus       222 DiaIavDvt~  231 (356)
T PRK09864        222 DVVIVLDTAV  231 (356)
T ss_pred             CEEEEEeccc
Confidence            5578888654

>PRK06156 hypothetical protein; Provisional

Probab=95.33  E-value=0.043  Score=49.69  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |+.|+=.|+|++|...+.|....  .+++..|.|+|...||        .+..|++++...
T Consensus       151 G~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~G~~~~~~~  201 (520)
T PRK06156        151 GTEDDKGAIVTALYAMKAIKDSG--LPLARRIELLVYTTEE--------TDGDPLKYYLER  201 (520)
T ss_pred             CcccchHHHHHHHHHHHHHHHcC--CCCCceEEEEEecccc--------cCchhHHHHHHh
Confidence            88999999999999999887631  2455789999999999        667899988854

>PRK07318 dipeptidase PepV; Reviewed

Probab=95.30  E-value=0.038  Score=49.15  Aligned_cols=52  Identities=15%  Similarity=0.136  Sum_probs=43.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|.=.|+|++|...+.|...-  .+++..|.|+|...||        .|.+|++++++.
T Consensus       114 RG~~DmKgg~aa~l~Al~~l~~~g--~~~~~~i~l~~~~DEE--------~g~~G~~~l~~~  165 (466)
T PRK07318        114 RGTSDDKGPTMAAYYALKIIKELG--LPLSKKVRFIVGTDEE--------SGWKCMDYYFEH  165 (466)
T ss_pred             cccccCcHHHHHHHHHHHHHHHcC--CCCCccEEEEEEcccc--------cCchhHHHHHHh
Confidence            389999999999999999997631  2446789999999999        677899999875

>PRK09104 hypothetical protein; Validated

Probab=95.29  E-value=0.068  Score=47.36  Aligned_cols=52  Identities=13%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+=.|||++|+.++.|.+..  ..++.+|.|+|...||        .|..|.+++.+.
T Consensus       124 RG~~D~Kg~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~  175 (464)
T PRK09104        124 RGASDDKGQLMTFVEACRAWKAVT--GSLPVRVTILFEGEEE--------SGSPSLVPFLEA  175 (464)
T ss_pred             ecccCCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECccc--------cCCccHHHHHHh
Confidence            389999999999999999998741  2456789999999999        555677777643

>PRK05111 acetylornithine deacetylase; Provisional

Probab=95.24  E-value=0.04  Score=47.13  Aligned_cols=50  Identities=26%  Similarity=0.237  Sum_probs=41.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|.=+++|++|...+.|..    ...+.+|.|+|..+||        .+..|++++++.
T Consensus       107 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~i~~~~~~~EE--------~g~~G~~~~~~~  156 (383)
T PRK05111        107 LGTADMKGFFAFILEALRDIDL----TKLKKPLYILATADEE--------TSMAGARAFAEA  156 (383)
T ss_pred             cccccccHHHHHHHHHHHHHhh----cCCCCCeEEEEEeccc--------cCcccHHHHHhc
Confidence            3788888899999999999976    3345689999999999        555799988864

>PRK00466 acetyl-lysine deacetylase; Validated

Probab=95.20  E-value=0.046  Score=46.43  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=40.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .||.|+=.|+|++|..++.|...      ..+|.|+|..+||        .+..|++++.+.
T Consensus        88 rG~~DmKgg~aa~l~a~~~l~~~------~~~i~~~~~~dEE--------~g~~G~~~l~~~  135 (346)
T PRK00466         88 RGAVDAKGPLISMIIAAWLLNEK------GIKVMVSGLADEE--------STSIGAKELVSK  135 (346)
T ss_pred             cCccccchHHHHHHHHHHHHHHc------CCCEEEEEEcCcc--------cCCccHHHHHhc
Confidence            59999999999999999998652      2468999999999        556799998854

>PRK12892 allantoate amidohydrolase; Reviewed

Probab=95.03  E-value=0.051  Score=47.11  Aligned_cols=53  Identities=26%  Similarity=0.346  Sum_probs=40.6

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~   66 (162)
                      |-.|+-.|+|++|++++.|...-  .+++..|.|+++..||.  |.     .++.||++++.
T Consensus        90 g~~dg~~Gvaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~~~~-----~~~~Gs~~~~~  144 (412)
T PRK12892         90 GRYDGALGVVAGLEAARALNEHG--IATRHPLDVVAWCDEEGSRFT-----PGFLGSRAYAG  144 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCccccccc-----CccccHHHHHc
Confidence            33577789999999999998731  24677899999999992  10     15789999984

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=95.00  E-value=0.067  Score=45.16  Aligned_cols=50  Identities=30%  Similarity=0.391  Sum_probs=38.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|++|.-+|+|++|.+++.|..      ++.+|.|+|...||..      .+.-|++.+...
T Consensus        91 rG~~D~Kg~~a~~l~a~~~l~~------~~~~i~~~~~~~EE~~------~~~~G~~~~~~~  140 (352)
T PRK13007         91 CGASDMKSGLAVMLHLAATLAE------PAHDLTLVFYDCEEVE------AEANGLGRLARE  140 (352)
T ss_pred             cCcccccHHHHHHHHHHHHhhc------cCCCeEEEEEeccccc------CCcccHHHHHHh
Confidence            4899999999999999999932      4568999999999920      012477777654

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase

Probab=94.95  E-value=0.059  Score=45.49  Aligned_cols=49  Identities=24%  Similarity=0.310  Sum_probs=41.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|.-+|+|++|+..+.|...      ...|.|++...||        .+..|++++.+.+
T Consensus        78 rG~~D~Kg~~aa~l~a~~~l~~~------~~~i~~~~~~dEE--------~g~~G~~~~~~~~  126 (336)
T TIGR01902        78 RGAVDAKGPLIAMIFATWLLNEK------GIKVIVSGLVDEE--------SSSKGAREVIDKN  126 (336)
T ss_pred             ecccCCCcHHHHHHHHHHHHHhC------CCcEEEEEEeCcc--------cCCccHHHHHhhc
Confidence            48999999999999999998652      3579999999999        6778999998663

This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.

>PRK07907 hypothetical protein; Provisional

Probab=94.90  E-value=0.058  Score=47.62  Aligned_cols=48  Identities=25%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |+.|+=.|+|++|..++.| .    .+++.+|.|++...||        .|..|++++++.
T Consensus       121 G~~D~Kg~~aa~l~a~~~l-~----~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~  168 (449)
T PRK07907        121 GAADDKGGIAMHLAALRAL-G----GDLPVGVTVFVEGEEE--------MGSPSLERLLAE  168 (449)
T ss_pred             CccCCcHHHHHHHHHHHHh-c----cCCCCcEEEEEEcCcc--------cCCccHHHHHHh
Confidence            9999999999999999999 3    3456789999888888        566799998865

>PRK06446 hypothetical protein; Provisional

Probab=94.88  E-value=0.062  Score=47.29  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .||.|.=+|+|++|...+.|...   .+++.+|.|+|...||        .|..|++++.+.
T Consensus        99 RGa~DmKgglaa~l~A~~~l~~~---~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~  149 (436)
T PRK06446         99 RGASDNKGTLMARLFAIKHLIDK---HKLNVNVKFLYEGEEE--------IGSPNLEDFIEK  149 (436)
T ss_pred             EeccCCcHHHHHHHHHHHHHHHc---CCCCCCEEEEEEcccc--------cCCHhHHHHHHH
Confidence            38999999999999999888653   3456799999999999        566788888755

>PRK12893 allantoate amidohydrolase; Reviewed

Probab=94.87  E-value=0.054  Score=47.00  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |.-|+-.|+|++|.+++.|...-  .+++.+|.|+|..+||.-  +.. .++.||++++..
T Consensus        92 g~~dgk~gvaa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~g--~~~-~~~~G~~~~~~~  147 (412)
T PRK12893         92 GRFDGALGVLAALEVVRTLNDAG--IRTRRPIEVVSWTNEEGA--RFA-PAMLGSGVFTGA  147 (412)
T ss_pred             CcccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEEcccccc--ccc-cccccHHHHhCc
Confidence            34588899999999999998731  245779999999999920  000 137899988743

>PRK07338 hypothetical protein; Provisional

Probab=94.79  E-value=0.078  Score=45.80  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |+.|.=+|+|++|..++.|....  .+.+.+|.|+|-.+||        .|..|++.+.+.
T Consensus       126 G~~DmKgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~~~~  176 (402)
T PRK07338        126 GVADMKGGIVVMLAALLAFERSP--LADKLGYDVLINPDEE--------IGSPASAPLLAE  176 (402)
T ss_pred             cHHhhhHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECCcc--------cCChhhHHHHHH
Confidence            88999999999999999997531  2346789999999999        566788887765

>PRK09290 allantoate amidohydrolase; Reviewed

Probab=94.50  E-value=0.084  Score=46.02  Aligned_cols=56  Identities=16%  Similarity=0.277  Sum_probs=41.0

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |..|+-.|+|++|..++.|...-  .+++..|.|+|...||.- .+  ..++.||+++++.
T Consensus        89 g~~d~k~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~g-~~--g~~~~G~~~~~~~  144 (413)
T PRK09290         89 GRFDGPLGVLAGLEAVRTLNERG--IRPRRPIEVVAFTNEEGS-RF--GPAMLGSRVFTGA  144 (413)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEcCCccc-cc--cCccccHHHHHcc
Confidence            45688899999999999998631  245678999999999920 00  0156799988743

>PRK13381 peptidase T; Provisional

Probab=94.44  E-value=0.088  Score=45.71  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      .|.=+|+|++|.+++.|...   .....+|.|+|..+||        .+..|++++..
T Consensus       137 ~DmKgg~aa~l~a~~~l~~~---~~~~g~i~~~~~~dEE--------~g~~G~~~~~~  183 (404)
T PRK13381        137 ADNKAAIAVVMTLLENLTEN---EVEHGDIVVAFVPDEE--------IGLRGAKALDL  183 (404)
T ss_pred             cccHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccc--------cccccHHHHHH
Confidence            78999999999999999763   2345689999999999        56679998853

>TIGR01886 dipeptidase dipeptidase PepV

Probab=94.42  E-value=0.088  Score=47.01  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      -|+.|+=.|+|++|..++.|+...  .+++.+|.|+|...||        .+..|++++++.
T Consensus       113 RG~~D~Kg~~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~~~~  164 (466)
T TIGR01886       113 RGASDDKGPSLAAYYAMKILKELG--LPPSKKIRFVVGTNEE--------TGWVDMDYYFKH  164 (466)
T ss_pred             cCccccchHHHHHHHHHHHHHHhC--CCCCCCEEEEEECccc--------cCcccHHHHHhc
Confidence            389999999999999999997631  3457799999999999        566799988864

This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.

>TIGR01891 amidohydrolases amidohydrolase

Probab=94.42  E-value=0.1  Score=44.59  Aligned_cols=43  Identities=28%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571           13 VPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus        13 sg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      +++|++|.+++.|....  .+.+.+|.|+|...||        .+ .|++++.+
T Consensus        93 ~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~~-~G~~~~~~  135 (363)
T TIGR01891        93 LHTAILLGTAKLLKKLA--DLLEGTVRLIFQPAEE--------GG-GGATKMIE  135 (363)
T ss_pred             HHHHHHHHHHHHHHhch--hhCCceEEEEEeecCc--------Cc-chHHHHHH
Confidence            68899999998887631  2356789999999999        43 69988864

This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=94.24  E-value=0.14  Score=44.54  Aligned_cols=50  Identities=20%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~   66 (162)
                      |+.|.=+|+|++|..++.|....  .+++.+|.|+|-..||        .+ ..|.+++++
T Consensus       120 Ga~D~Kg~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~~g~~~l~~  170 (427)
T PRK13013        120 GACDMKGGLAASIIAAEAFLAVY--PDFAGSIEISGTADEE--------SGGFGGVAYLAE  170 (427)
T ss_pred             cccccchHHHHHHHHHHHHHHhC--CCCCccEEEEEEeccc--------cCChhHHHHHHh
Confidence            89999999999999999998731  2456789999999999        33 336666654

>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]

Probab=94.10  E-value=0.081  Score=46.09  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      ||||-||+|++.=+|+.|...    +...+-+|||-            ....||-.+-.+-+           .-|++|+
T Consensus       193 aNdn~SG~all~~lak~l~~~----ktrysYRfvf~------------P~TiGsi~wLsrne-----------e~lkhvk  245 (435)
T COG4310         193 ANDNLSGLALLTFLAKALKSL----KTRYSYRFVFA------------PETIGSIVWLSRNE-----------ECLKHVK  245 (435)
T ss_pred             ccCccchHHHHHHHHHHHHhc----cceeeEEEEec------------ccccchhhhHhcch-----------hHHhhhh
Confidence            899999999999999999984    57899999996            33568864433211           4578999


Q ss_pred             eEEEeccCCCCC
Q psy571           88 MLVLLDLLGTSN   99 (162)
Q Consensus        88 ~~i~lDmvG~~~   99 (162)
                      ..+.+-++|...
T Consensus       246 ~GlVlsClGD~g  257 (435)
T COG4310         246 HGLVLSCLGDGG  257 (435)
T ss_pred             cceEEEEecCCC
Confidence            999999999864

>TIGR01887 dipeptidaselike dipeptidase, putative

Probab=94.00  E-value=0.12  Score=46.05  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|.=.|+|++|..++.|....  .+++..|.|+|...||        .+..|++++.+.
T Consensus       102 RGa~D~KG~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~  153 (447)
T TIGR01887       102 RGTLDDKGPTIAALYAMKILKELG--LKLKKKIRFIFGTDEE--------TGWACIDYYFEH  153 (447)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCcc--------cCcHhHHHHHHh
Confidence            388999999999999999997631  2457789999999999        677898887753

This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.

>TIGR01882 peptidase-T peptidase T

Probab=93.92  E-value=0.089  Score=46.00  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=38.6

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      ....| .|.=+|+|+||.+++.|....  ..+..+|.|+|-.+||        .+ .|++++.
T Consensus       136 ~~l~G-~D~KgglAa~l~A~~~L~e~~--~~~~g~I~~~ft~dEE--------~g-~Ga~~l~  186 (410)
T TIGR01882       136 TTLLG-ADDKAGIAEIMTAADYLINHP--EIKHGTIRVAFTPDEE--------IG-RGAHKFD  186 (410)
T ss_pred             CEeec-ccCHHHHHHHHHHHHHHHhCC--CCCCCCEEEEEECccc--------CC-cCcchhh
Confidence            34567 667789999999999997621  1235679999999999        45 4888775

This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade

Probab=93.83  E-value=0.2  Score=42.75  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE   69 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~   69 (162)
                      |+.|.=.|+|++|..++.|.+..  .+.+.+|.|+|..+||.       .+..|++.+.+.+.
T Consensus        93 G~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~-------~~~~G~~~~~~~~~  146 (370)
T TIGR01246        93 GAADMKGSLAAFIVAAERFVKKN--PDHKGSISLLITSDEEG-------TAIDGTKKVVETLM  146 (370)
T ss_pred             ccccchHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEecccc-------CCCcCHHHHHHHHH
Confidence            77788889999999988776631  24567899999999992       23579999887653

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.

>PRK07079 hypothetical protein; Provisional

Probab=93.66  E-value=0.18  Score=44.83  Aligned_cols=53  Identities=15%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      |+.|.=+|+|++|...+.|.+... .+++.+|.|+|-..||        .+..|++++++..
T Consensus       124 Ga~DmKgg~aa~l~A~~~l~~~~~-~~~~~~i~~~~~~dEE--------~g~~G~~~l~~~~  176 (469)
T PRK07079        124 GTADNKGQHTINLAALEQVLAARG-GRLGFNVKLLIEMGEE--------IGSPGLAEVCRQH  176 (469)
T ss_pred             eccCCcHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECccc--------cCCccHHHHHHHh
Confidence            899999999999999998854210 2456789999999999        5668999998764

>PRK07205 hypothetical protein; Provisional

Probab=93.53  E-value=0.17  Score=44.59  Aligned_cols=51  Identities=20%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      .|+.|+=.|+|++|...+.|...-  .+++.+|.|+|...||        .+..|+++|.+
T Consensus       112 RGa~DmKgglaa~l~Al~~l~~~~--~~~~~~i~l~~~~dEE--------~g~~g~~~~~~  162 (444)
T PRK07205        112 RGTQDDKGPSMAALYAVKALLDAG--VQFNKRIRFIFGTDEE--------TLWRCMNRYNE  162 (444)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCcc--------cCcccHHHHHh
Confidence            389999999999999999987631  3456789999999999        45568888775

>PRK04443 acetyl-lysine deacetylase; Provisional

Probab=93.38  E-value=0.15  Score=43.32  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=32.9

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE   47 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE   47 (162)
                      .|+.|.=.|+|++|+.++.| .    .+++.+|.|++..+||
T Consensus        87 rG~~D~Kg~~aa~l~A~~~l-~----~~~~~~i~~~~~~dEE  123 (348)
T PRK04443         87 RGSVDAKGPLAAFAAAAARL-E----ALVRARVSFVGAVEEE  123 (348)
T ss_pred             ecccccccHHHHHHHHHHHh-c----ccCCCCEEEEEEcccc
Confidence            48999999999999999999 3    4567789999999999

>PRK08201 hypothetical protein; Provisional

Probab=93.32  E-value=0.21  Score=44.05  Aligned_cols=51  Identities=14%  Similarity=0.029  Sum_probs=40.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |+.|.=.|+|++|...+.|....  ...+.+|.|+|...||        .|-.|++++.+.
T Consensus       117 G~~DmKgglaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~  167 (456)
T PRK08201        117 GASDDKGQVFMHLKAVEALLKVE--GTLPVNVKFCIEGEEE--------IGSPNLDSFVEE  167 (456)
T ss_pred             ecccCcHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEcccc--------cCCccHHHHHHh
Confidence            89999999999999999996531  2346789999999999        455677777654

>PRK13004 peptidase; Reviewed

Probab=93.31  E-value=0.2  Score=43.47  Aligned_cols=52  Identities=19%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      |+.|+-+|+|++|..++.|...-  .+++.+|.|+|..+||.       .+-.|++++++.
T Consensus       107 G~~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~-------~~g~~~~~~~~~  158 (399)
T PRK13004        107 GTSDQKGGMASMVYAAKIIKDLG--LDDEYTLYVTGTVQEED-------CDGLCWRYIIEE  158 (399)
T ss_pred             CccccchHHHHHHHHHHHHHhcC--CCCCCeEEEEEEccccc-------CcchhHHHHHHh
Confidence            78899999999999999998731  24567899999999992       123567766654

>PRK15026 aminoacyl-histidine dipeptidase; Provisional

Probab=93.11  E-value=0.17  Score=45.78  Aligned_cols=47  Identities=23%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             cCCC---CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            6 IGAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         6 ~GA~---DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      .|++   |+.+|+|++|.+.+..      ......|.|+|...||        .|+.||+++..
T Consensus       108 ~Gt~lgaD~k~gva~~l~~l~~~------~~~~~~i~~l~t~dEE--------~G~~ga~~l~~  157 (485)
T PRK15026        108 RGTTLGADNGIGMASALAVLADE------NVVHGPLEVLLTMTEE--------AGMDGAFGLQS  157 (485)
T ss_pred             CCccccCccHHHHHHHHHHHHhC------CCCCCCEEEEEEcccc--------cCcHhHHHhhh
Confidence            4664   8899999998765221      2235579999999999        78889998853

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase

Probab=93.01  E-value=0.22  Score=43.02  Aligned_cols=55  Identities=27%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      ||.|.=+|+|++|..++.|.....+..++.+|.|+|...||.-      .+..|++++++.
T Consensus       100 Ga~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~------~~~~G~~~~~~~  154 (373)
T TIGR01900       100 GATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVA------AEKNGLGHIRDA  154 (373)
T ss_pred             CchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEeccccc------CCCCCHHHHHHh
Confidence            8899999999999999999542110245678999999999920      123588888764

This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.

>PRK06915 acetylornithine deacetylase; Validated

Probab=92.87  E-value=0.24  Score=43.16  Aligned_cols=50  Identities=16%  Similarity=-0.010  Sum_probs=39.0

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      .|+.|.=+|+|++|..++.|....  .+++.+|.|+|..+||        .+..|+..+.
T Consensus       130 rG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~G~~~~~  179 (422)
T PRK06915        130 RGTTDMKGGNVALLLAMEALIESG--IELKGDVIFQSVIEEE--------SGGAGTLAAI  179 (422)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEecccc--------cCCcchHHHH
Confidence            488899999999999999997631  2456789999999999        4445776654

>PRK05469 peptidase T; Provisional

Probab=92.77  E-value=0.22  Score=43.32  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      .|.=+|+|++|..++.|....  ..++.+|.|+|-.+||        .+ .|++++.
T Consensus       139 ~D~Kgglaa~l~a~~~l~~~~--~~~~g~v~~~f~~dEE--------~g-~Ga~~~~  184 (408)
T PRK05469        139 ADDKAGIAEIMTALEYLIAHP--EIKHGDIRVAFTPDEE--------IG-RGADKFD  184 (408)
T ss_pred             ccchHHHHHHHHHHHHHHhCC--CCCCCCEEEEEecccc--------cC-CCHHHhh
Confidence            889999999999999997631  2345689999999999        55 6888875

>PRK06837 acetylornithine deacetylase; Provisional

Probab=92.05  E-value=0.35  Score=42.43  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE   47 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE   47 (162)
                      |+.|+-.|+|++|..++.|....  .+++.+|.|+|...||
T Consensus       135 G~~D~Kgg~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE  173 (427)
T PRK06837        135 GAADMKAGLAAMLFALDALRAAG--LAPAARVHFQSVIEEE  173 (427)
T ss_pred             CcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEEeccc
Confidence            89999999999999999987631  2467789999998899

>KOG2657|consensus

Probab=92.01  E-value=0.46  Score=43.71  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=69.0

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      -+||.---+|.-.+|-.|++|+..-.-....++|.|+||.||=        -+-+||+.++-.++..+.|      ..++
T Consensus       196 s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~get--------~~ylgS~r~~yeme~gk~p------va~~  261 (596)
T KOG2657|consen  196 SVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFNGET--------LDYLGSGRAAYEMENGKFP------VAIR  261 (596)
T ss_pred             cCCccccchhHHHHHHHHHHhccCcccccccceeEEEEeecce--------eeeccchhhhhHhhcCCCC------eeec
Confidence            3466544557778888999996520003468999999999998        5668999999887666544      3455


Q ss_pred             c---eeeEEEeccCCCC-CCcccccC------CCchHHHHHHHHHHHHHH
Q psy571           85 R---MDMLVLLDLLGTS-NPRFYSYY------PPTHKWYKQLVGIESRLT  124 (162)
Q Consensus        85 ~---i~~~i~lDmvG~~-~~~~~~~~------~~t~~~~~~l~~ie~~l~  124 (162)
                      +   |+.++-+-.||.. +..+..+.      ..+.+..++|..+|+-++
T Consensus       262 s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlr  311 (596)
T KOG2657|consen  262 SDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLR  311 (596)
T ss_pred             cCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhccc
Confidence            5   8888888888864 22222221      134444555556655554

>KOG2275|consensus

Probab=91.28  E-value=0.52  Score=42.11  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=44.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      ||.|-=+-++.+||..|.|...-  .++.++|-+.|--+||.       +|..|.+-||+.
T Consensus       126 GaqD~K~~~va~leAir~L~~~g--~kp~Rti~lsfvpDEEi-------~G~~Gm~~fa~~  177 (420)
T KOG2275|consen  126 GAQDMKCVGVAYLEAIRNLKASG--FKPKRTIHLSFVPDEEI-------GGHIGMKEFAKT  177 (420)
T ss_pred             cccchHhHHHHHHHHHHHHHhcC--CCcCceEEEEecCchhc-------cCcchHHHHhhh
Confidence            89999898899999999998732  46899999999999994       568899999973

>PRK02256 putative aminopeptidase 1; Provisional

Probab=90.00  E-value=0.7  Score=41.85  Aligned_cols=35  Identities=20%  Similarity=0.090  Sum_probs=29.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE   47 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE   47 (162)
                      ++-||=+||.++||..+.+.      .++..+.+++||-||
T Consensus       257 ~rLDNr~~~~~~leal~~~~------~~~~~~~~~~~dqEE  291 (462)
T PRK02256        257 YGQDDRVCAYTSLEALLELE------NPEKTAVVLLVDKEE  291 (462)
T ss_pred             cccccHHHHHHHHHHHHhcc------cCCCeEEEEEEcccc
Confidence            67899999999999987653      245688999999999

>PLN02280 IAA-amino acid hydrolase

Probab=89.15  E-value=0.88  Score=41.13  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571           14 PCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus        14 g~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      ++|++|.+|+.|....  .+.+.+|.|+|-.+||        .+ .|++++++.
T Consensus       190 ~~A~~l~a~~~L~~~~--~~~~g~V~~if~pdEE--------~g-~Ga~~li~~  232 (478)
T PLN02280        190 HVAMLLGAAKILKSRE--HLLKGTVVLLFQPAEE--------AG-NGAKRMIGD  232 (478)
T ss_pred             HHHHHHHHHHHHHhcc--ccCCceEEEEeccccc--------cc-chHHHHHHC
Confidence            9999999999997631  2356789999999999        44 499988753

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family

Probab=88.24  E-value=0.78  Score=39.81  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE   47 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE   47 (162)
                      |-|+=+|||++|++++.|...-  .+++.+|.|+|...||
T Consensus       181 ~~D~K~G~a~~l~~~~~l~~~~--~~~~~~v~~~~t~qEE  218 (343)
T TIGR03106       181 HLDDKAGVAALLAALKAIVEHK--VPLPVDVHPLFTITEE  218 (343)
T ss_pred             ecccHHhHHHHHHHHHHHHhcC--CCCCceEEEEEECCcc
Confidence            5799999999999999998631  2367899999999999

This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins

Probab=86.60  E-value=2.6  Score=38.58  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCc-c-cccccceee
Q psy571           11 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK-T-LTKLDRMDM   88 (162)
Q Consensus        11 nAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~-~-~~~l~~i~~   88 (162)
                      |..|+|.+|-+||.+++.   .=-.+.|.|++-|.|           ..|.+.+.+.......+.... + ..+-..|++
T Consensus        35 n~~~v~l~lal~~~~~~~---~~wsKDii~l~~~~~-----------~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~a  100 (504)
T PF04114_consen   35 NAGGVALALALARYFRRQ---SYWSKDIIFLFTDDE-----------LAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQA  100 (504)
T ss_pred             chhhHHHHHHHHHHhhhc---hhhhccEEEEecCCc-----------chHHHHHHHHHhCCCCccccccCCCCCCcceeE
Confidence            588999999999999874   223567999987644           368888887665432211100 0 123457999


Q ss_pred             EEEeccCCCCCC
Q psy571           89 LVLLDLLGTSNP  100 (162)
Q Consensus        89 ~i~lDmvG~~~~  100 (162)
                      .|++|.-+....
T Consensus       101 Al~le~~~~~~~  112 (504)
T PF04114_consen  101 ALVLEYPSDSFS  112 (504)
T ss_pred             EEEEEecCCCcc
Confidence            999999886544

Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex

>PRK08737 acetylornithine deacetylase; Provisional

Probab=82.92  E-value=2.4  Score=36.60  Aligned_cols=45  Identities=22%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~   67 (162)
                      .||.|-=+|+|++|..++.+         ...|.|+|...||        .+. .|++++.+.
T Consensus        98 rGa~DmKg~~aa~l~a~~~~---------~~~v~~~~~~dEE--------~g~~~g~~~~~~~  143 (364)
T PRK08737         98 LGVCDIKGAAAALLAAANAG---------DGDAAFLFSSDEE--------ANDPRCVAAFLAR  143 (364)
T ss_pred             ECcccchHHHHHHHHHHHcc---------CCCEEEEEEcccc--------cCchhhHHHHHHh
Confidence            38999878999999887631         2469999999999        444 788888754

>PLN02693 IAA-amino acid hydrolase

Probab=82.01  E-value=3.5  Score=36.70  Aligned_cols=48  Identities=27%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      |.|-=+++|++|.+|+.|....  ...+.+|.|+|-.+||        .+ -|++.+++
T Consensus       134 acGhkg~~A~~l~Aa~~L~~~~--~~~~g~V~~if~pdEE--------~~-~Ga~~~i~  181 (437)
T PLN02693        134 ACGHDGHVAMLLGAAKILQEHR--HHLQGTVVLIFQPAEE--------GL-SGAKKMRE  181 (437)
T ss_pred             CCcchHHHHHHHHHHHHHHhCc--ccCCceEEEEEEEccc--------ch-hhHHHHHH
Confidence            4444458999999999998631  2345689999999999        22 48887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
4fai_A	330	Crystal Structure Of Mitochondrial Isoform Of Gluta		6e-27
3si2_A	327	Structure Of Glycosylated Murine Glutaminyl Cyclase		2e-26
2zel_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		3e-26
3si1_A	327	Structure Of Glycosylated Murine Glutaminyl Cyclase		4e-26
3si0_A	330	Structure Of Glycosylated Human Glutaminyl Cyclase		4e-26
2zem_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		4e-26
2afm_A	329	Crystal Structure Of Human Glutaminyl Cyclase At Ph		4e-26
2zep_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		4e-26
2afs_A	329	Crystal Structure Of The Genetic Mutant R54w Of Hum		4e-26
4fbe_A	330	Crystal Structure Of The C136aC164A VARIANT OF MITO		8e-26
2zed_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		8e-26
2zef_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		9e-26
2afu_A	329	Crystal Structure Of Human Glutaminyl Cyclase In Co		9e-26
2zee_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		1e-25
2zeo_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		1e-25
2zeg_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		3e-25
2zen_A	329	Crystal Structure Of The Human Glutaminyl Cyclase M		4e-25
3pbe_A	329	Crystal Structure Of The Mutant W207f Of Human Secr		4e-25
3pb4_X	330	Crystal Structure Of The Catalytic Domain Of Human		3e-23
4f9u_A	312	Structure Of Glycosylated Glutaminyl Cyclase From D		2e-20
4f9v_A	312	Structure Of C113aC136A MUTANT VARIANT OF GLYCOSYLA		3e-19
4fuu_A	309	Crystal Structure Of A Leucine Aminopeptidase Precu		5e-04

>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl Cyclase From Drosophila Melanogaster Length = 330

Iteration: 1
 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 94/165 (56%), Gaps = 18/165 (10%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN-LGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           F+GATDSAVPCAMLL +A++++++L  L ++ L L L+FFDGEEAF EW  +DSI+GARH
Sbjct: 124 FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARH 183
Query: 64  LAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           LA KW      H GK                 G  +P FYS++  T  WY ++  +E+RL
Sbjct: 184 LAKKW-----HHEGKL----DRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRL 234
Query: 124 TAQGLLNMVNSN---RSKKLTYFREM---STFPVAEDDHLPFYYR 162
               LL    S+   +     YF+     S+F   EDDH+PF  R
Sbjct: 235 AKLQLLERYASSGVAQRDPTRYFQSQAMRSSF--IEDDHIPFLRR 277

>pdb|2ZEL|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant D248a At 1.97 Angstrom Resolution Length = 329

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLALIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|3SI1|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase Length = 327

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF+ WS +DS+
Sbjct: 120 FVGATDSAVPCAMMLELARALDKKLHSLKDVSGSKPDLSLRLIFFDGEEAFHHWSPQDSL 179
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA K   S      +   +             G +NP F +++P T +W+ +L  
Sbjct: 180 YGSRHLAQKMASSPHPPGSRGTNQLDGMDLLVLLDLIGAANPTFPNFFPKTTRWFNRLQA 239
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
           IE  L   GLL     + S +  YF+      + +DDH+PF
Sbjct: 240 IEKELYELGLLK----DHSLERKYFQNFGYGNIIQDDHIPF 276

>pdb|3SI0|A Chain A, Structure Of Glycosylated Human Glutaminyl Cyclase Length = 330

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 123 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 182
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 183 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 242
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 243 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 282

>pdb|2ZEM|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant D248q At 2.18 Angstrom Resolution Length = 329

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLQLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2AFM|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase At Ph 6.5 Length = 329

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2ZEP|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant H319l At 2.1 Angstrom Resolution Length = 329

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2AFS|A Chain A, Crystal Structure Of The Genetic Mutant R54w Of Human Glutaminyl Cyclase Length = 329

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|4FBE|A Chain A, Crystal Structure Of The C136aC164A VARIANT OF MITOCHONDRIAL ISOFORM Of Glutaminyl Cyclase From Drosophila Melanogaster Length = 330

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 93/165 (56%), Gaps = 18/165 (10%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN-LGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           F+GATDSAVP AMLL +A++++++L  L ++ L L L+FFDGEEAF EW  +DSI+GARH
Sbjct: 124 FLGATDSAVPAAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARH 183
Query: 64  LAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           LA KW      H GK                 G  +P FYS++  T  WY ++  +E+RL
Sbjct: 184 LAKKW-----HHEGKL----DRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRL 234
Query: 124 TAQGLLNMVNSN---RSKKLTYFREM---STFPVAEDDHLPFYYR 162
               LL    S+   +     YF+     S+F   EDDH+PF  R
Sbjct: 235 AKLQLLERYASSGVAQRDPTRYFQSQAMRSSF--IEDDHIPFLRR 277

>pdb|2ZED|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant S160a At 1.7 Angstrom Resolution Length = 329

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATD+AVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDAAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2ZEF|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant E201d At 1.67 Angstrom Resolution Length = 329

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDG+EAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGDEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2AFU|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex With Glutamine T-Butyl Ester Length = 329

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDG+EAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGQEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2ZEE|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant S160g At 1.99 Angstrom Resolution Length = 329

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATD AVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDGAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2ZEO|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant D305e At 1.66 Angstrom Resolution Length = 329

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V ++DH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQEDHIPFLRR 281

>pdb|2ZEG|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant E201l At 2.08 Angstrom Resolution Length = 329

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDG EAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGLEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|2ZEN|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant D305a At 1.78 Angstrom Resolution Length = 329

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V + DH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQADHIPFLRR 281

>pdb|3PBE|A Chain A, Crystal Structure Of The Mutant W207f Of Human Secretory Glutaminyl Cyclase Length = 329

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 10/164 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDSI 58
           F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  +S +DS+
Sbjct: 122 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHFSPQDSL 181
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLAAK   +      +  ++             G  NP F +++P + +W+++L  
Sbjct: 182 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA 241
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 242 IEHELHELGLLK----DHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>pdb|3PB4|X Chain X, Crystal Structure Of The Catalytic Domain Of Human Golgi-Resident Glutaminyl Cyclase At Ph 6.0 Length = 330

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 2   ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSI 58
           ++PF+GATDSAVPCA+LL +A+ +  ELS+  +    + L L+F DGEEA  EW  +DS+
Sbjct: 126 STPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSL 185
Query: 59  WGARHLAAKWERSHLQHRGKTLTKXXXXXXXXXXXXXGTSNPRFYSYYPPTHKWYKQLVG 118
           +G+RHLA   E   + H     T+             G  NP FYS++P T +W+ +L  
Sbjct: 186 YGSRHLAQLMES--IPHSPGP-TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS 242
Query: 119 IESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           IE RL     LN++ S+  +++ YF+    F   EDDH+PF  R
Sbjct: 243 IEKRLHR---LNLLQSH-PQEVMYFQPGEPFGSVEDDHIPFLRR 282

>pdb|4F9U|A Chain A, Structure Of Glycosylated Glutaminyl Cyclase From Drosophila Melanogaster Length = 312

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWGA 61
           F+GATDSAVPCA+LL  A+ +   L +  +N   +GL LIFFDGEEAF EW+  DS++G+
Sbjct: 98  FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGS 157
Query: 62  RHLAAKWERSHLQHRGKTLTKXXXXXXX-XXXXXXGTSNPRFYSYYPPTHKWYKQLVGIE 120
           +HLAAK        + +   +              G  NP+F S+Y  T   +  LV IE
Sbjct: 158 KHLAAKLASKRSGSQAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIE 217
Query: 121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
             L   G L   N+        F    +  + +DDH PF
Sbjct: 218 KSLRTAGQLEGNNN-------MFLSRVSGGLVDDDHRPF 249

>pdb|4F9V|A Chain A, Structure Of C113aC136A MUTANT VARIANT OF GLYCOSYLATED GLUTAMINYL Cyclase From Drosophila Melanogaster Length = 312

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWGA 61
           F+GATDSAVP A+LL  A+ +   L +  +N   +GL LIFFDGEEAF EW+  DS++G+
Sbjct: 98  FVGATDSAVPAAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGS 157
Query: 62  RHLAAKWERSHLQHRGKTLTKXXXXXXX-XXXXXXGTSNPRFYSYYPPTHKWYKQLVGIE 120
           +HLAAK        + +   +              G  NP+F S+Y  T   +  LV IE
Sbjct: 158 KHLAAKLASKRSGSQAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIE 217
Query: 121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159
             L   G L   N+        F    +  + +DDH PF
Sbjct: 218 KSLRTAGQLEGNNN-------MFLSRVSGGLVDDDHRPF 249

>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor (Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.30 A Resolution Length = 309

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 3   SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47
           +P +GA D A     LL IARL+ Q+  +    LG+D+IF D E+
Sbjct: 120 TPILGANDGASGVGALLEIARLVNQQQPE----LGIDIIFLDAED 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
2afw_A	329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	8e-37
3pb6_X	330	Glutaminyl-peptide cyclotransferase-like protein;	2e-32
3tc8_A	309	Leucine aminopeptidase; phosphorylase/hydrolase-li	4e-22
3gux_A	314	Putative Zn-dependent exopeptidase; aminopeptidase	1e-21

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329

 Score =  128 bits (322), Expect = 8e-37
 Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 10/165 (6%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDS 57
            F+GATDSAVPCAM+L +AR + ++L  L        +L L LIFFDGEEAF  WS +DS
Sbjct: 121 VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDS 180

Query: 58  IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 117
           ++G+RHLAAK   +      +  ++L  MD+LVLLDL+G  NP F +++P + +W+++L 
Sbjct: 181 LYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQ 240

Query: 118 GIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
            IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 241 AIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330

 Score =  116 bits (292), Expect = 2e-32
 Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 10/162 (6%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWG 60
           PF+GATDSAVPCA+LL +A+ +  ELS+  +    + L L+F DGEEA  EW  +DS++G
Sbjct: 128 PFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYG 187

Query: 61  ARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIE 120
           +RHLA   E           T++  +++ +LLDLLG  NP FYS++P T +W+ +L  IE
Sbjct: 188 SRHLAQLMES---IPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIE 244

Query: 121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
            RL    LL     +  +++ YF+    F   EDDH+PF  R
Sbjct: 245 KRLHRLNLL----QSHPQEVMYFQPGEPFGSVEDDHIPFLRR 282

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309

 Score = 89.0 bits (220), Expect = 4e-22
 Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 22/159 (13%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARH 63
           P  GA D       LL IAR + Q+       +G+D+IFFD E+        D    +  
Sbjct: 121 PLDGADDGGSGVGALLEIARQIGQK----APGIGIDIIFFDAEDYGTPEFVTDYTPDSWC 176

Query: 64  LAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
           L  ++   +              +  +LLD++G  N  F+            +  + S  
Sbjct: 177 LGTQFWAKNPH------VPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAA 230

Query: 124 TAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
                       R      +   +      DDH      
Sbjct: 231 ------------RDLGYGKYFINAAGGAITDDHQYVISG 257

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314

 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 4   PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSAEDSIWGAR 62
           P +G  D A    +LL IAR     + +    LG+D++FFD E+    E+          
Sbjct: 123 PILGVNDGASGVGVLLEIARQ----IQKEQPALGIDIVFFDSEDYGIPEFYDGKYKQDTW 178

Query: 63  HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
            L +++             +       +LLD++G  +  FY           ++  I  +
Sbjct: 179 CLGSQYWARTPH------VQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKK 232

Query: 123 LTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 160
               G                          DDH+   
Sbjct: 233 AHELGYGKYFVKEDG------------GETVDDHIYVN 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3pb6_X	330	Glutaminyl-peptide cyclotransferase-like protein;	100.0
4fai_A	330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	100.0
4f9u_A	312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	100.0
2afw_A	329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	99.96
3gux_A	314	Putative Zn-dependent exopeptidase; aminopeptidase	99.92
4fuu_A	309	Leucine aminopeptidase; phosphorylase/hydrolase li	99.92
3tc8_A	309	Leucine aminopeptidase; phosphorylase/hydrolase-li	99.91
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	99.66
1tkj_A	284	Aminopeptidase, SGAP; double-zinc metalloproteinas	99.59
1rtq_A	299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	99.58
3kas_A	640	Transferrin receptor protein 1; transferrin recept	99.58
3k9t_A	435	Putative peptidase; structural genomics, joint cen	99.57
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	99.55
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	99.49
3t68_A	268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	98.17
4h2k_A	269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	98.15
1q7l_A	198	Aminoacylase-1; catalysis, enzyme dimerization, si	97.95
1vhe_A	373	Aminopeptidase/glucanase homolog; structural genom	97.87
2wyr_A	332	Cobalt-activated peptidase TET1; hydrolase, large	97.78
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	97.71
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	97.71
1y0y_A	353	FRV operon protein FRVX; aminopeptidase, PDZ, hydr	97.65
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	97.63
3n5f_A	408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	97.48
2gre_A	349	Deblocking aminopeptidase; structural genomi prote	97.48
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	97.44
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	97.43
2fvg_A	340	Endoglucanase; TM1049, structural genomics, joint	97.37
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	97.34
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	97.29
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	97.13
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	97.09
1z2l_A	423	Allantoate amidohydrolase; ALLC, purine cataboli a	97.0
3kl9_A	355	PEPA, glutamyl aminopeptidase; tetrahedral aminope	96.94
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	96.84
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	96.83
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	96.7
3gb0_A	373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	96.67
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	96.57
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	96.54
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	96.48
2v8h_A	474	Beta-alanine synthase; amidohydrolase, alpha and b	96.42
1xmb_A	418	IAA-amino acid hydrolase homolog 2; structural gen	96.37
3ife_A	434	Peptidase T; metallopeptidase, aminopeptidase, hyd	96.31
1ysj_A	404	Protein YXEP; M20 family peptidase, dinuclear meta	96.12
1fno_A	417	Peptidase T; metallo peptidase, protease, hydrolas	96.1
1ylo_A	348	Hypothetical protein SF2450; structural genomics,	95.85
3io1_A	445	Aminobenzoyl-glutamate utilization protein; peptid	95.42
2qyv_A	487	XAA-His dipeptidase; YP_718209.1, structural genom	95.09
3mru_A	490	Aminoacyl-histidine dipeptidase; metalloprotease,	94.82
2vpu_A	354	TET3, 354AA long hypothetical operon protein FRV;	94.76
3ram_A	394	HMRA protein; two-domain, catalytic (alpha-beta-al	94.45
1vho_A	346	Endoglucanase; structural genomics, unknown functi	94.2
3cpx_A	321	Aminopeptidase, M42 family; YP_676701.1, putative	93.37
3isx_A	343	Endoglucanase; TM1050, structural genomics, joint	90.35
2ijz_A	428	Probable M18-family aminopeptidase 2; putative ami	80.82

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*

Probab=100.00  E-value=2.1e-35  Score=251.26  Aligned_cols=153  Identities=44%  Similarity=0.814  Sum_probs=132.5

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhc---cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcc
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQ---LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKT   79 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~---~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~   79 (162)
                      .+++||+|||||||+|||+||.|...+++   .+++++|+||||+|||.|.+|++++||+||++||++|.++++|+.+  
T Consensus       127 ~~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~f~~w~~~~gl~GS~~~a~~~~~~~~~~~~--  204 (330)
T 3pb6_X          127 TPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYGSRHLAQLMESIPHSPGP--  204 (330)
T ss_dssp             CCCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSCSSCCSTTSSCHHHHHHHHHHHHSBCSSCS--
T ss_pred             cCcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCcccccccCCCCCCccHHHHHHHHHhcCCcccc--
Confidence            46899999999999999999999874321   3689999999999999999999999999999999999988776544  


Q ss_pred             cccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCcccc
Q psy571           80 LTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF  159 (162)
Q Consensus        80 ~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH~PF  159 (162)
                       .++++|+++|||||+|.+++.++.++.++.+++..+.+||+++++++.+..++.    ...||++....+.+.|||+||
T Consensus       205 -~~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~g~~~~~p~----~~~~f~~~~~~~~~~SDH~pF  279 (330)
T 3pb6_X          205 -TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLHRLNLLQSHPQ----EVMYFQPGEPFGSVEDDHIPF  279 (330)
T ss_dssp             -BTTTTEEEEEEEESCSSSSCCBCCCCGGGHHHHHHHHHHHHHHHHTTCCSSCCS----SCSSBCSSCSSCCCSCTTHHH
T ss_pred             -chhhCeEEEEeccCCCCCCCCceeecCcchHHHHHHHHHHHHHHHcCccccCCc----ccccccccccCCCCCCchHhH
Confidence             478999999999999999999888888999999999999999999988876541    236887544567899999999


Q ss_pred             cCC
Q psy571          160 YYR  162 (162)
Q Consensus       160 ~~r  162 (162)
                      +++
T Consensus       280 ~~~  282 (330)
T 3pb6_X          280 LRR  282 (330)
T ss_dssp             HTT
T ss_pred             HHC
Confidence            874

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*

Probab=100.00  E-value=5.2e-34  Score=241.49  Aligned_cols=151  Identities=50%  Similarity=0.919  Sum_probs=123.4

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccc
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLT   81 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~   81 (162)
                      ..++||+|||||||+|||+||.|++.+.+ .+++++|+||||||||....|++++++|||+|||+.|...         .
T Consensus       122 ~~~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl~~~~~~~llGS~~~a~~~~~~---------~  192 (330)
T 4fai_A          122 VEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLAKKWHHE---------G  192 (330)
T ss_dssp             SCCCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSSSCBTTBSCHHHHHHHHHHHHT---------T
T ss_pred             CCCCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccccccccchhhhhHHHHhcchhc---------c
Confidence            46899999999999999999999886543 4789999999999999999999999999999999998764         4


Q ss_pred             cccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCC---ccccccccccC-CCCCCccCcc
Q psy571           82 KLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNR---SKKLTYFREMS-TFPVAEDDHL  157 (162)
Q Consensus        82 ~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~---~~~~~~F~~~~-~~~~i~DDH~  157 (162)
                      ++++|.++|||||+|.+++.++.++..+.+++..+..+|++++..+.+.......   .....+|.... .++.++|||+
T Consensus       193 ~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~  272 (330)
T 4fai_A          193 KLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHI  272 (330)
T ss_dssp             CSTTEEEEEEECSCSSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTC---------------CCEEEEEETTCCCCSTTH
T ss_pred             chhceeEEEEeccCccCCCCceeeccCcchHHHHHHHHHHHhhhhhhhhhhhccccccccccccccccCCCCCCCCCchH
Confidence            6789999999999999999999999999999999999999999988876544211   11224555432 4567999999


Q ss_pred             cccCC
Q psy571          158 PFYYR  162 (162)
Q Consensus       158 PF~~r  162 (162)
                      ||+++
T Consensus       273 pF~~~  277 (330)
T 4fai_A          273 PFLRR  277 (330)
T ss_dssp             HHHTT
T ss_pred             HHHHC
Confidence            99874

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*

Probab=100.00  E-value=5.8e-33  Score=232.05  Aligned_cols=153  Identities=43%  Similarity=0.719  Sum_probs=128.5

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhc---cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCc-
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQ---LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK-   78 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~---~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~-   78 (162)
                      ..++||+|||||||+|||+||+|...+.+   .+|+++|+||||||||....|+++++|+||++||+.|.....+.... 
T Consensus        96 ~~~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~~~L~GS~~~a~~~~~~~~~~~~~~  175 (312)
T 4f9u_A           96 PGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQAQL  175 (312)
T ss_dssp             TTCCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSSSSCHHHHHHHHHHHHCBC------
T ss_pred             CCCCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCccccccChHHHHHHHHhhcccccccc
Confidence            46899999999999999999999876432   46899999999999998899999999999999999887654322111 


Q ss_pred             ccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCccc
Q psy571           79 TLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLP  158 (162)
Q Consensus        79 ~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH~P  158 (162)
                      ...++++|.++||+||+|.+++.+..++.++.+++..+.+++++++.++.+.+..       .+|.....++.+.|||.|
T Consensus       176 ~~~~~~~i~~~inlDmvg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~SDH~p  248 (312)
T 4f9u_A          176 APRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRTAGQLEGNN-------NMFLSRVSGGLVDDDHRP  248 (312)
T ss_dssp             -CBGGGGEEEEEEEESCCSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTCSSSSC-------CCEEEEECSSCCCCTTHH
T ss_pred             ccccccceeeeeeeeccccCCCCceEEEeccchhhhHHHHHHHHHHHhccccccc-------cccccccCCCCCCCchHH
Confidence            2357889999999999999999999999999999999999999999998887665       566655557789999999


Q ss_pred             ccCC
Q psy571          159 FYYR  162 (162)
Q Consensus       159 F~~r  162 (162)
                      |+++
T Consensus       249 F~~~  252 (312)
T 4f9u_A          249 FLDE  252 (312)
T ss_dssp             HHTT
T ss_pred             HHHC
Confidence            9874

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...

Probab=99.96  E-value=7.4e-29  Score=209.29  Aligned_cols=156  Identities=46%  Similarity=0.799  Sum_probs=125.3

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhc------cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccC
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQ------LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHR   76 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~------~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~   76 (162)
                      +.++||+||+||||+|||+||.|.....+      .+++++|+|+||++||.+..|++++|++||++|++.|.+.++|+.
T Consensus       120 ~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE~~~~~~~~~gl~Gs~~~~~~~~~~~~p~~  199 (329)
T 2afw_A          120 RVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPG  199 (329)
T ss_dssp             BCCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHHHHHTSBSSTT
T ss_pred             cCCCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCcccccccCCCccchhHHHHHHHHHhCCCccc
Confidence            35789999999999999999999875311      157899999999999998889988899999999999988766654


Q ss_pred             CcccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCc
Q psy571           77 GKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDH  156 (162)
Q Consensus        77 ~~~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH  156 (162)
                      +....++++|.++|||||+|..++.+..++..+.+++..+.+++++++..+.+.+.+    ....+|.+...++.+.|||
T Consensus       200 ~~~~~~~~~i~~~inlD~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~----~~~~~f~~~~~~g~~~sDh  275 (329)
T 2afw_A          200 ARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHS----LEGRYFQNYSYGGVIQDDH  275 (329)
T ss_dssp             CSSCBTTTTEEEEEEECSCCSSSCCBCCCCGGGHHHHHHHHHHHHHHHHTTCSSSCC----STTCSBCSCCCCSCCCSTT
T ss_pred             ccccccccceEEEEEeccCCCCCCceeeeccCcchHHHHHHHHHHHHHHcCCccCCC----cccccccccccCCCCCCCC
Confidence            433356889999999999999998887777778888888888999898887664322    1225676544355789999


Q ss_pred             ccccCC
Q psy571          157 LPFYYR  162 (162)
Q Consensus       157 ~PF~~r  162 (162)
                      .||+++
T Consensus       276 ~~F~~~  281 (329)
T 2afw_A          276 IPFLRR  281 (329)
T ss_dssp             HHHHTT
T ss_pred             HhHHHC
Confidence            999874

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=99.92  E-value=8.4e-26  Score=190.70  Aligned_cols=132  Identities=23%  Similarity=0.316  Sum_probs=88.2

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc-cccccCC----CC-CccchHHHHHHHHhcccccC
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSA----ED-SIWGARHLAAKWERSHLQHR   76 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE-~~~~w~~----~~-~l~GS~~~a~~~~~~~~~~~   76 (162)
                      ..++||+||+||||+|||+||.|..    .+++++|+|+||++|| .+++|+.    +| +++||++|++.+.       
T Consensus       122 ~~~~GA~D~~sGva~~Le~ar~l~~----~~~~~~i~fv~~~~EE~Gl~~~~~~~~~~ds~~~GS~~~~~~~~-------  190 (314)
T 3gux_A          122 TPILGVNDGASGVGVLLEIARQIQK----EQPALGIDIVFFDSEDYGIPEFYDGKYKQDTWCLGSQYWARTPH-------  190 (314)
T ss_dssp             --------CHHHHHHHHHHHHHHHH----SCCSSEEEEEEECSCCC-----------CTTSCHHHHHHHHSCS-------
T ss_pred             cccCCCcccHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCccccccccccccccccccchhHHHHHhCCc-------
Confidence            4578999999999999999999987    4689999999999999 5778865    23 4799999996532       


Q ss_pred             CcccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCc
Q psy571           77 GKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDH  156 (162)
Q Consensus        77 ~~~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH  156 (162)
                          .++.+|+++|||||+|.+++.++..+.++.+..    .+++.+++.....++.       .+|++.. ++.+.|||
T Consensus       191 ----~~~~~~~~~inlDm~G~~~~~~~~~g~~~~~~~----~l~~~~~~~~~~~g~~-------~~f~~~~-~~~~~sDh  254 (314)
T 3gux_A          191 ----VQNYNARYGILLDMVGGKDATFYYEGYSARTAR----SEMKKIWKKAHELGYG-------KYFVKED-GGETVDDH  254 (314)
T ss_dssp             ----STTCCCSEEEEEESCCBTTCCEEECTTHHHHCH----HHHHHHHHHHHHHTCT-------TTEEEEE-CCCCCCHH
T ss_pred             ----ccccceeEEEEEeccCCCCCceeeeccccccHH----HHHHHHHHHHHHcCCc-------ccccccc-CCCCCCcc
Confidence                345789999999999999998877665443333    3333333322222544       6787654 66899999


Q ss_pred             ccccC
Q psy571          157 LPFYY  161 (162)
Q Consensus       157 ~PF~~  161 (162)
                      +||++
T Consensus       255 ~pF~~  259 (314)
T 3gux_A          255 IYVNK  259 (314)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=7.5e-26  Score=189.26  Aligned_cols=132  Identities=25%  Similarity=0.285  Sum_probs=95.1

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc-cccc---cC--CCCCccchHHHHHHHHhcccccC
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNE---WS--AEDSIWGARHLAAKWERSHLQHR   76 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE-~~~~---w~--~~~~l~GS~~~a~~~~~~~~~~~   76 (162)
                      .+++||+|||||||+|||+||+|..    .+++++|+|||||||| ....   |.  ...+++||++|++...       
T Consensus       120 ~~~~GA~D~aSG~a~lLE~ar~l~~----~~~~~~i~~~~~~~EE~Gl~~~~~~~~~~~~~l~GS~~~~~~~~-------  188 (309)
T 4fuu_A          120 TPILGANDGASGVGALLEIARLVNQ----QQPELGIDIIFLDAEDYGTPQFYEGKHKEEAWCLGSQYWSRNPH-------  188 (309)
T ss_dssp             SCCCCTTTTHHHHHHHHHHHHHHHH----SCCSSEEEEEEECSSSCCCCTTCCSCCCGGGSCHHHHHHHHSCS-------
T ss_pred             CCcCCcccCchhHHHHHHHHHHHhh----cCCCCceEEEeecccccCccccccchhhhhhhhcchhHHHhccc-------
Confidence            4689999999999999999999987    5789999999999999 3222   21  2235799999985421       


Q ss_pred             CcccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCc
Q psy571           77 GKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDH  156 (162)
Q Consensus        77 ~~~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH  156 (162)
                          .++.+|.++|||||+|.+++.+........    .+..+.+.+.+.....++.       ..|.... +..+.|||
T Consensus       189 ----~~~~~i~~~inlDmvG~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~sDh  252 (309)
T 4fuu_A          189 ----VQGYNARFGILLDMVGGENSVFLKEGYSEE----FAPDINKKVWKAAKKAGYG-------KTFIDER-GDTITDDH  252 (309)
T ss_dssp             ----STTCCCSEEEEECSCCBTTCCEEECHHHHH----HCHHHHHHHHHHHHHTTCT-------TTEEEEE-CCCCCCHH
T ss_pred             ----ccCcceEEEEeeeccCCCCCceEeecCchh----hhHHHHHHHHHHHHhcCCc-------ccccccC-CCCCCCCh
Confidence                456789999999999999987665433222    2234455555544443443       3454433 56789999


Q ss_pred             ccccC
Q psy571          157 LPFYY  161 (162)
Q Consensus       157 ~PF~~  161 (162)
                      .||.+
T Consensus       253 ~~F~~  257 (309)
T 4fuu_A          253 LFINR  257 (309)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99974

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}

Probab=99.91  E-value=5.2e-25  Score=185.15  Aligned_cols=132  Identities=25%  Similarity=0.306  Sum_probs=100.4

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc-cccccCCC---C-CccchHHHHHHHHhcccccCC
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSAE---D-SIWGARHLAAKWERSHLQHRG   77 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE-~~~~w~~~---~-~l~GS~~~a~~~~~~~~~~~~   77 (162)
                      ..|+||+|||||||+|||+||.|..    .+++++|.|+||++|| .+++|++.   | +++||++|++.+.        
T Consensus       120 ~~~~Ga~D~~sGva~~Le~ar~l~~----~~~~~~i~f~~~~~EE~Gl~~~~~~~~~ds~~~GS~~~~~~~~--------  187 (309)
T 3tc8_A          120 TPLDGADDGGSGVGALLEIARQIGQ----KAPGIGIDIIFFDAEDYGTPEFVTDYTPDSWCLGTQFWAKNPH--------  187 (309)
T ss_dssp             SCCCCTTTTHHHHHHHHHHHHHHHH----SCCSSEEEEEEECSCSCSCCTTCCSCCTTCSCHHHHHHHHSCS--------
T ss_pred             ccccCcccchHhHHHHHHHHHHHHh----CCCCCcEEEEEECccccccccccccccccccchhHHHHHhCCC--------
Confidence            5678999999999999999999987    4589999999999999 57888752   3 4799999996532        


Q ss_pred             cccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCcc
Q psy571           78 KTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHL  157 (162)
Q Consensus        78 ~~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH~  157 (162)
                         .++.+|+++|||||+|.+++.|+.++.++.+....+..+++.++.+    ++.       .+|+... ++.+.|||+
T Consensus       188 ---~~~~~~~~~inlD~~G~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~----g~~-------~~f~~~~-~g~~~sDh~  252 (309)
T 3tc8_A          188 ---VPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAARDL----GYG-------KYFINAA-GGAITDDHQ  252 (309)
T ss_dssp             ---STTCCCSEEEEEESCCBTTCCEEECHHHHHHHHHHHHHHHHHHHHH----TCT-------TTEEEEE-CCCCCCHHH
T ss_pred             ---ccccceEEEEEecccCCCCCceeecccccchHHHHHHHHHHHHHHc----CCc-------ceeccCC-CCCCCCccH
Confidence               3457899999999999999988776544433333333443333322    444       5787654 678999999


Q ss_pred             cccC
Q psy571          158 PFYY  161 (162)
Q Consensus       158 PF~~  161 (162)
                      ||.+
T Consensus       253 ~f~~  256 (309)
T 3tc8_A          253 YVIS  256 (309)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9986

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=99.66  E-value=1.4e-16  Score=139.23  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      +||+||+||||+|||+||.|...-  .+++++|+|+||++||        .|++||++|++.+.           .++.+
T Consensus       265 ~Ga~D~~sG~a~~le~a~~l~~~~--~~~~~~i~f~~~~~EE--------~gl~Gs~~~~~~~~-----------~~~~~  323 (444)
T 3iib_A          265 TGAIDDGAGVAIVTAAAKHILDLP--QKPERTIRVVLYAAEE--------LGLLGGKTYAKEHE-----------AELEK  323 (444)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHTSS--SCCSEEEEEEEESCGG--------GTSHHHHHHHHHTG-----------GGGGG
T ss_pred             CCCccchHHHHHHHHHHHHHHhcC--CCCCCeEEEEEECCcc--------cCCcCHHHHHHhhH-----------hhhhc
Confidence            699999999999999999998741  3688999999999999        79999999998753           35678


Q ss_pred             eeeEEEeccCCCCCCcc
Q psy571           86 MDMLVLLDLLGTSNPRF  102 (162)
Q Consensus        86 i~~~i~lDmvG~~~~~~  102 (162)
                      +.++||+||+|.+...+
T Consensus       324 ~~~~~n~D~~~~~~~~~  340 (444)
T 3iib_A          324 HYIAAESDFGAGPIYQI  340 (444)
T ss_dssp             EEEEEECCSTTCCEEEE
T ss_pred             eeEEEECcCCCCcceEE
Confidence            99999999998775443

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A

Probab=99.59  E-value=3.5e-15  Score=122.89  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=64.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      +||.|+++|||+||++||.|....  .+++++|.|+||++||        .|+.||+++++.+..          ..+++
T Consensus        93 ~Ga~D~~~g~a~~l~~~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~Gs~~~~~~~~~----------~~~~~  152 (284)
T 1tkj_A           93 AGINDNGSGSAAVLETALAVSRAG--YQPDKHLRFAWWGAEE--------LGLIGSKFYVNNLPS----------ADRSK  152 (284)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHTT--CCCSEEEEEEEESCGG--------GTSHHHHHHHHHSCH----------HHHTT
T ss_pred             CCCccChHHHHHHHHHHHHHHhcC--CCCCceEEEEEECCcc--------cCCcCHHHHHhhCcc----------chhhc
Confidence            489999999999999999998731  3578999999999999        689999999976432          23468


Q ss_pred             eeeEEEeccCCCCCCcc
Q psy571           86 MDMLVLLDLLGTSNPRF  102 (162)
Q Consensus        86 i~~~i~lDmvG~~~~~~  102 (162)
                      |+++||+||+|..+..+
T Consensus       153 ~~~~i~~D~~g~~~~~~  169 (284)
T 1tkj_A          153 LAGYLNFDMIGSPNPGY  169 (284)
T ss_dssp             EEEEEEECCCCCSSCCC
T ss_pred             EEEEEEecCCCCCCCCe
Confidence            99999999999887543

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...

Probab=99.58  E-value=7.7e-15  Score=121.50  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      ..||.||++|||+|||+||.|...-  .+++++|.|+||++||        .|+.||+++++.+..           ++.
T Consensus       112 ~~Ga~D~~~g~a~~l~~~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~Gs~~~~~~~~~-----------~~~  170 (299)
T 1rtq_A          112 APGADDDASGIAAVTEVIRVLSENN--FQPKRSIAFMAYAAEE--------VGLRGSQDLANQYKS-----------EGK  170 (299)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHHHHTT--CCCSEEEEEEEESCGG--------GTSHHHHHHHHHHHH-----------TTC
T ss_pred             cCCCcccHHHHHHHHHHHHHHHHcC--CCCCceEEEEEECCcc--------CCchhHHHHHHhhhh-----------ccc
Confidence            5899999999999999999998731  3578999999999999        689999999987653           356


Q ss_pred             ceeeEEEeccCCCCC
Q psy571           85 RMDMLVLLDLLGTSN   99 (162)
Q Consensus        85 ~i~~~i~lDmvG~~~   99 (162)
                      +++++||+||+|.++
T Consensus       171 ~~~~~i~~D~~g~~g  185 (299)
T 1rtq_A          171 NVVSALQLDMTNYKG  185 (299)
T ss_dssp             EEEEEEECSCCSCCC
T ss_pred             cEEEEEEecCCCCCC
Confidence            799999999998753

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=99.58  E-value=4.1e-15  Score=135.84  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      .+||+||+||||+|||+||.|.....+  .+|+++|+|++|+|||        .||+||++|++.+..          ..
T Consensus       293 ~~Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE--------~gl~GS~~~~~~~~~----------~l  354 (640)
T 3kas_A          293 GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGD--------FGSVGATEWLEGYLS----------SL  354 (640)
T ss_dssp             SCCTTTTHHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSGG--------GTSHHHHHHHHHTTT----------TG
T ss_pred             CCCCCcCcHHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEECCcc--------cCchhHHHHHHhhhh----------hh
Confidence            579999999999999999999985311  4789999999999999        799999999976422          11


Q ss_pred             ccceeeEEEeccCCCCCCcc
Q psy571           83 LDRMDMLVLLDLLGTSNPRF  102 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~~~  102 (162)
                      .++|.++||+||+|..+..+
T Consensus       355 ~~~~~a~iNlD~~~~G~~~l  374 (640)
T 3kas_A          355 HLKAFTYINLDKAVLGTSNF  374 (640)
T ss_dssp             GGTEEEEEECTTCBSCSSEE
T ss_pred             hhCEEEEEecccCccCCCce
Confidence            26899999999998765433

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}

Probab=99.57  E-value=6.1e-15  Score=128.84  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=57.6

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      +|||||||+|++||+||.|+.    .+++++++||||+            +++||++|+++..           ..+++|
T Consensus       193 ~ANDNaSG~a~lleLar~l~~----~~~~~t~rFvf~p------------g~iGS~~yl~~~~-----------~~l~~i  245 (435)
T 3k9t_A          193 MCNDNLSGVALITFIAKALSK----LKTKYSYRFLFAP------------ETIGSITWLSRNE-----------DKLKNI  245 (435)
T ss_dssp             CTTTTHHHHHHHHHHHHHHTT----SCCSSEEEEEEEC------------TTHHHHHHHHHCG-----------GGGGGE
T ss_pred             CCCccchHHHHHHHHHHHHhc----CCCCceEEEEEcC------------ccHHHHHHHHhCh-----------Hhhhce
Confidence            499999999999999999986    5689999999996            3579999986521           357799


Q ss_pred             eeEEEeccCCCCCC
Q psy571           87 DMLVLLDLLGTSNP  100 (162)
Q Consensus        87 ~~~i~lDmvG~~~~  100 (162)
                      ++++||||||..+.
T Consensus       246 ~a~lnLDmVGd~~~  259 (435)
T 3k9t_A          246 KMGLVATCVGDAGI  259 (435)
T ss_dssp             EEEEECCSCCSSSC
T ss_pred             EEEEEEEEecCCCC
Confidence            99999999999875

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=99.55  E-value=9.4e-15  Score=134.75  Aligned_cols=82  Identities=21%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      ...||+||+||||+|||+||.|....++ .+++++|+|++|+|||        .||.||++|++.+..          ..
T Consensus       338 ~~~Ga~D~~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE--------~Gl~GS~~~~~~~~~----------~~  399 (707)
T 3fed_A          338 WVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEE--------FGLLGSTEWAEENVK----------IL  399 (707)
T ss_dssp             SSSCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGG--------GTSHHHHHHHHHHHH----------HH
T ss_pred             CCCCCccCcHHHHHHHHHHHHHHhhhhccCCCCCCEEEEEeCCcc--------ccchhHHHHHHhcch----------hh
Confidence            3579999999999999999999885322 3789999999999999        799999999987543          13


Q ss_pred             ccceeeEEEeccCCCCCCccc
Q psy571           83 LDRMDMLVLLDLLGTSNPRFY  103 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~~~~  103 (162)
                      .++|.++||+||.|..+..+.
T Consensus       400 ~~~~~a~iNlD~~~~g~~~~~  420 (707)
T 3fed_A          400 QERSIAYINSDSSIEGNYTLR  420 (707)
T ss_dssp             HHHEEEEEECSCSBSCSSEEE
T ss_pred             hhCEEEEEEecccccCCceEE
Confidence            468999999999998764433

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=99.49  E-value=1.3e-14  Score=125.51  Aligned_cols=73  Identities=30%  Similarity=0.487  Sum_probs=63.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      +||+||++|||+|||+||.|..    .+++++|.|+||++||        .|++||++|++.+..          ..+++
T Consensus       236 ~Ga~D~~~G~a~~le~~~~l~~----~~~~~~i~~~~~~~EE--------~g~~Gs~~~~~~~~~----------~~~~~  293 (421)
T 2ek8_A          236 PGANDDASGVAVTLELARVMSK----LKTDTELRFITFGAEE--------NGLIGSKKYAASLSE----------DEIKR  293 (421)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHTT----SCCSSEEEEEEESSST--------TTSHHHHHHHTTCCH----------HHHHH
T ss_pred             CCCCCCcHhHHHHHHHHHHHhc----cCCCceEEEEEECCcc--------ccchhHHHHHHhCcc----------chhhc
Confidence            5999999999999999999987    4578999999999999        799999999965322          24678


Q ss_pred             eeeEEEeccCCCCCC
Q psy571           86 MDMLVLLDLLGTSNP  100 (162)
Q Consensus        86 i~~~i~lDmvG~~~~  100 (162)
                      |.++||+||+|.++.
T Consensus       294 ~~~~in~D~~g~~~~  308 (421)
T 2ek8_A          294 TIGMFQLDMVGSKDA  308 (421)
T ss_dssp             EEEEEEECSCCBTTS
T ss_pred             EEEEEEecccCCCCC
Confidence            999999999999775

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A

Probab=98.17  E-value=5.3e-06  Score=66.98  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHHHHhcccccCCccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      .||.|+.+|||++|++++.|....  .+++.+|.|+|...||        .+. .||+++++.+.+.           ..
T Consensus        99 ~G~~D~k~g~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~~Ga~~~~~~~~~~-----------~~  157 (268)
T 3t68_A           99 RGAADMKGSLACMIVAVERFIAEH--PDHQGSIGFLITSDEE--------GPFINGTVRVVETLMAR-----------NE  157 (268)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHC--TTCSSEEEEEEESCTT--------SSSCCHHHHHHHHHHHT-----------TC
T ss_pred             cCcccchHHHHHHHHHHHHHHHhC--CCCCCcEEEEEEeCCc--------cCcccCHHHHHHHHHhc-----------CC
Confidence            399999999999999999997641  2457899999999999        555 6999999876543           13


Q ss_pred             ceeeEEEeccCCC
Q psy571           85 RMDMLVLLDLLGT   97 (162)
Q Consensus        85 ~i~~~i~lDmvG~   97 (162)
                      +++++|++|.-+.
T Consensus       158 ~~d~~i~~ept~~  170 (268)
T 3t68_A          158 LIDMCIVGEPSST  170 (268)
T ss_dssp             CCCEEEECSCCBS
T ss_pred             CCCEEEEeCCCCC
Confidence            5688888886543

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}

Probab=98.15  E-value=6.9e-06  Score=66.43  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHHHHhcccccCCccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      .||.|+.+|||++|++++.|....  .+++.+|.|+|+..||        .+. +||+++++.+.+.           ..
T Consensus        99 rG~~D~k~g~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~~Ga~~~~~~~~~~-----------~~  157 (269)
T 4h2k_A           99 RGAADMKGSLAAMIVAAEEYVKAN--PNHKGTIALLITSDEE--------ATAKDGTIHVVETLMAR-----------DE  157 (269)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHC--TTCSSEEEEEEESCSS--------SCCTTSHHHHHHHHHHT-----------TC
T ss_pred             CCcccChHHHHHHHHHHHHHHHhC--CCCCccEEEEEEeccc--------cCcccCHHHHHHHHHhc-----------CC
Confidence            399999999999999999998641  2457899999999999        555 5999999876543           13


Q ss_pred             ceeeEEEeccCC
Q psy571           85 RMDMLVLLDLLG   96 (162)
Q Consensus        85 ~i~~~i~lDmvG   96 (162)
                      +++++|++|.-+
T Consensus       158 ~~d~~i~~Ept~  169 (269)
T 4h2k_A          158 KITYCMVGEPSS  169 (269)
T ss_dssp             CCCEEEECCCCB
T ss_pred             CCCEEEEECCCC
Confidence            567888887654

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4

Probab=97.95  E-value=8.5e-06  Score=63.12  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=44.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~~   67 (162)
                      .||.|+.+|||++|++++.|...-  .+++.+|.|+|+..||        .| +.|++++++.
T Consensus       109 rGa~D~K~g~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~~Ga~~~~~~  161 (198)
T 1q7l_A          109 RGAQDMKCVSIQYLEAVRRLKVEG--HRFPRTIHMTFVPDEE--------VGGHQGMELFVQR  161 (198)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSCEEEEEESCGG--------GTSTTTHHHHTTS
T ss_pred             CcchhchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEEcccc--------cCccccHHHHHHh
Confidence            589999999999999999998731  2467899999999999        54 7899999854

>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4

Probab=97.87  E-value=1.3e-05  Score=67.87  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |.||.+|||++|++++.|..    ..++.+|.|+|++.||        .|+.|+++++..+                +.+
T Consensus       182 ~~D~k~g~a~~l~a~~~l~~----~~~~~~v~~~~~~~EE--------~G~~G~~~~~~~~----------------~~d  233 (373)
T 1vhe_A          182 AWDNRIGCAIAIDVLRNLQN----TDHPNIVYGVGTVQEE--------VGLRGAKTAAHTI----------------QPD  233 (373)
T ss_dssp             THHHHHHHHHHHHHHHHHHT----SCCSSEEEEEEESCCT--------TTSHHHHHHHHHH----------------CCS
T ss_pred             cCccHHHHHHHHHHHHHHhh----cCCCceEEEEEECCcc--------cChhhHHHHhccc----------------CCC
Confidence            89999999999999999976    3466899999999999        7889999886431                135


Q ss_pred             eEEEeccCCC
Q psy571           88 MLVLLDLLGT   97 (162)
Q Consensus        88 ~~i~lDmvG~   97 (162)
                      ++|++|+.+.
T Consensus       234 ~~i~~d~~~~  243 (373)
T 1vhe_A          234 IAFGVDVGIA  243 (373)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEecccc
Confidence            6788887654

>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A

Probab=97.78  E-value=6.7e-06  Score=68.14  Aligned_cols=63  Identities=16%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |.||.+|||++|++++.|..    ..++.+|.|+|++.||        .|+.||+++++.                -+.+
T Consensus       171 a~D~k~g~a~~l~a~~~l~~----~~~~~~i~~~~~~~EE--------~G~~G~~~~~~~----------------~~~~  222 (332)
T 2wyr_A          171 GLDDRFGVVALIEAIKDLVD----HELEGKVIFAFTVQEE--------VGLKGAKFLANH----------------YYPQ  222 (332)
T ss_dssp             THHHHHHHHHHHHHHHTTTT----SCCSSEEEEEEESCGG--------GTSHHHHHHTTT----------------CCCS
T ss_pred             cCCcHHHHHHHHHHHHHHhh----cCCCceEEEEEECccc--------cCcchHHHHhcc----------------cCCC
Confidence            79999999999999999876    3466899999999999        678899888621                1246


Q ss_pred             eEEEeccCCCC
Q psy571           88 MLVLLDLLGTS   98 (162)
Q Consensus        88 ~~i~lDmvG~~   98 (162)
                      ++|++|+.+..
T Consensus       223 ~~i~~d~~~~~  233 (332)
T 2wyr_A          223 YAFAIDSFACC  233 (332)
T ss_dssp             EEEEECCEECC
T ss_pred             EEEEEeccccc
Confidence            78999987754

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*

Probab=97.71  E-value=6e-05  Score=64.99  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      .||.|+-.|+|++|++++.|....  .+++.+|.|+|+.+||        .|..|++++++.....          -+.+
T Consensus       132 rGa~D~K~g~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~Ga~~~~~~~~~~----------~~~~  191 (479)
T 2zog_A          132 RGSTDDKGPVAGWMNALEAYQKTG--QEIPVNLRFCLEGMEE--------SGSEGLDELIFAQKDK----------FFKD  191 (479)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSEEEEEEESCGG--------GTCTTHHHHHHHTTTT----------TTTT
T ss_pred             eccccChHHHHHHHHHHHHHHHhC--CCCCCcEEEEEecccc--------cCCccHHHHHHhhhhh----------hccc
Confidence            478999999999999999998731  3467899999999999        5668999988653210          1234


Q ss_pred             eeeEEEecc
Q psy571           86 MDMLVLLDL   94 (162)
Q Consensus        86 i~~~i~lDm   94 (162)
                      ++++|++|-
T Consensus       192 ~d~~i~~e~  200 (479)
T 2zog_A          192 VDYVCISDN  200 (479)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEEeCC
Confidence            566676663

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.71  E-value=4.4e-05  Score=63.74  Aligned_cols=50  Identities=20%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCC-CccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAED-SIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~-~l~GS~~~a~~   67 (162)
                      .|+.|+.+|+|++|++++.|...    +++.+|.|+|+.+||        . ++.||+++++.
T Consensus       101 ~G~~D~k~g~a~~l~a~~~l~~~----~~~~~v~~~~~~~EE--------~~g~~G~~~~~~~  151 (356)
T 3ct9_A          101 LGSNDAGASVVSLLQVFLQLCRT----SQNYNLIYLASCEEE--------VSGKEGIESVLPG  151 (356)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHTTS----CCSSEEEEEEECCGG--------GTCTTTHHHHGGG
T ss_pred             cCcccchHHHHHHHHHHHHHHhc----CCCCCEEEEEEeCcc--------cCCccCHHHHHhh
Confidence            48889999999999999999873    377899999999999        5 67899988754

>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A

Probab=97.65  E-value=3.5e-05  Score=64.46  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |.|+.+|||++|++++.|..      ++.+|.|+|++.||        .|+.||++++..+                +.+
T Consensus       180 a~D~k~g~a~~l~a~~~l~~------~~~~i~~~~~~~EE--------~g~~G~~~~~~~~----------------~~~  229 (353)
T 1y0y_A          180 AFDDRIAVYTILEVAKQLKD------AKADVYFVATVQEE--------VGLRGARTSAFGI----------------EPD  229 (353)
T ss_dssp             THHHHHHHHHHHHHHHHCCS------CSSEEEEEEESCCT--------TTSHHHHHHHHHH----------------CCS
T ss_pred             cCccHHHHHHHHHHHHHhhc------CCCeEEEEEECCcc--------cchhHHHHHhhcc----------------CCC
Confidence            89999999999999998753      56789999999999        7889999887431                246


Q ss_pred             eEEEeccCCCC
Q psy571           88 MLVLLDLLGTS   98 (162)
Q Consensus        88 ~~i~lDmvG~~   98 (162)
                      ++|++|+.+..
T Consensus       230 ~~i~~d~~~~~  240 (353)
T 1y0y_A          230 YGFAIDVTIAA  240 (353)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEeccccc
Confidence            78899987653

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1

Probab=97.63  E-value=0.00011  Score=61.83  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+-.|||++|++++.|...-  .++..+|.|+|..+||        .+..|++++++..
T Consensus       115 rG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~G~~~~~~~~  167 (393)
T 1cg2_A          115 PGIADDKGGNAVILHTLKLLKEYG--VRDYGTITVLFNTDEE--------KGSFGSRDLIQEE  167 (393)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSEEEEEEESCGG--------GTTTTTHHHHHHH
T ss_pred             CCcccchHHHHHHHHHHHHHHhcC--CCCCCCEEEEEEcccc--------cCCccHHHHHHHH
Confidence            588999999999999999998731  2345699999999999        5678999998753

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}

Probab=97.48  E-value=0.00015  Score=61.37  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      -|+.|+.+|||++|++++.|...-  .+++.+|.|+|+.+||.-.   -..++.||++++.
T Consensus        86 ~g~~d~~~g~a~~l~~~~~l~~~~--~~~~~~i~~~~~~~EE~~~---~~~g~~Gs~~~~~  141 (408)
T 3n5f_A           86 GGCFDGPLGVLAGVEVVQTMNEHG--VVTHHPIEVVAFTDEEGAR---FRFGMIGSRAMAG  141 (408)
T ss_dssp             BCSSTTHHHHHHHHHHHHHHHHTT--CCCSSCEEEEEESCSSCTT---TTCCCHHHHHHHT
T ss_pred             CCccCCHHHHHHHHHHHHHHHHcC--CCCCCCEEEEEEcCccccc---cCCCCcCHHHHHc
Confidence            378899999999999999998741  3477899999999999200   0026889999973

>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4

Probab=97.48  E-value=0.00011  Score=61.50  Aligned_cols=63  Identities=16%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |.||.+|||++|++++.|...-  .+++.+|.|+|+..||        .|+.|++++     .             -+.+
T Consensus       184 ~~D~k~g~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~G~~g~~~~-----~-------------~~~~  235 (349)
T 2gre_A          184 HLDDKVSVAILLKLIKRLQDEN--VTLPYTTHFLISNNEE--------IGYGGNSNI-----P-------------EETV  235 (349)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHT--CCCSEEEEEEEESCC------------CCCCCC-----C-------------TTEE
T ss_pred             eccchHHHHHHHHHHHHHHhcc--CCCCceEEEEEECccc--------CCchhhccc-----c-------------cCCC
Confidence            7999999999999999997631  2467899999999999        677888754     1             1368


Q ss_pred             eEEEeccCCCC
Q psy571           88 MLVLLDLLGTS   98 (162)
Q Consensus        88 ~~i~lDmvG~~   98 (162)
                      ++|++|+.+..
T Consensus       236 ~~i~~D~~~~~  246 (349)
T 2gre_A          236 EYLAVDMGALG  246 (349)
T ss_dssp             EEEEECCCCCS
T ss_pred             EEEEEeccccc
Confidence            89999998764

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}

Probab=97.44  E-value=0.00024  Score=61.48  Aligned_cols=52  Identities=17%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-+|||++|++++.|....  ..++.+|.|+|+.+||        .|..|++++++.
T Consensus       143 rG~~D~k~g~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~g~~~~~~~  194 (481)
T 2pok_A          143 RGVDDDKGHITARLSALRKYMQHH--DDLPVNISFIMEGAEE--------SASTDLDKYLEK  194 (481)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTC--SSCSSEEEEEEESCGG--------GTTTTHHHHHHH
T ss_pred             cccccCcHHHHHHHHHHHHHHHhc--CCCCCCEEEEEecccc--------cCchhHHHHHHH
Confidence            478999999999999999998731  2467899999999999        566799888765

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}

Probab=97.43  E-value=0.0003  Score=61.07  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      .|+.|+-.|+|++|.+++.|....  .+++.+|.|+|..+||        .+..|++++.+....          .-+++
T Consensus       139 rG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~g~~~~~~~~~~----------~~~~~  198 (485)
T 3dlj_A          139 RGATDNKGPVLAWINAVSAFRALE--QDLPVNIKFIIEGMEE--------AGSVALEELVEKEKD----------RFFSG  198 (485)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSEEEEEEESCGG--------GTTTTHHHHHHHHTT----------TTSTT
T ss_pred             cccccCcHHHHHHHHHHHHHHHhC--CCCCccEEEEEEcccc--------cCCccHHHHHHhhhh----------hcccC
Confidence            589999999999999999998741  2567899999999999        556799988865321          11345


Q ss_pred             eeeEEEecc
Q psy571           86 MDMLVLLDL   94 (162)
Q Consensus        86 i~~~i~lDm   94 (162)
                      ++++|.+|-
T Consensus       199 ~d~~~~~~~  207 (485)
T 3dlj_A          199 VDYIVISDN  207 (485)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEEcCC
Confidence            777777774

>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=97.37  E-value=0.0001  Score=61.32  Aligned_cols=59  Identities=14%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      |.||.+|||++|++++.|.      +++.+|.|+|++.||        .|+.|++++++.+                +.+
T Consensus       165 a~D~k~g~a~~l~a~~~l~------~~~~~i~~~~~~~EE--------~G~~G~~~~~~~~----------------~~~  214 (340)
T 2fvg_A          165 AFDDRAGCSVLIDVLESGV------SPAYDTYFVFTVQEE--------TGLRGSAVVVEQL----------------KPT  214 (340)
T ss_dssp             CHHHHHHHHHHHHHHHTCC------CCSEEEEEEEECCCC-------------CHHHHHHH----------------CCS
T ss_pred             cCccHHHHHHHHHHHHHhh------ccCCcEEEEEEcccc--------cchhhhHHHhhcc----------------CCC
Confidence            7999999999999999885      356789999999999        7889999988631                125


Q ss_pred             eEEEeccCC
Q psy571           88 MLVLLDLLG   96 (162)
Q Consensus        88 ~~i~lDmvG   96 (162)
                      ++|++|+.+
T Consensus       215 ~~i~~d~~~  223 (340)
T 2fvg_A          215 CAIVVETTT  223 (340)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeccc
Confidence            678888754

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1

Probab=97.34  E-value=0.0007  Score=56.86  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=45.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER   70 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~   70 (162)
                      .|+.|+-.|+|++|+.++.|....  .+++.+|.|+|+.+||.       .++.|++++++.+..
T Consensus        99 rG~~D~k~~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~~EE~-------~~~~Ga~~~~~~~~~  154 (393)
T 1vgy_A           99 RGAADMKTSIACFVTACERFVAKH--PNHQGSIALLITSDEEG-------DALDGTTKVVDVLKA  154 (393)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHC--TTCSSEEEEEEESCSSS-------CCTTSHHHHHHHHHH
T ss_pred             cCcccchHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEecccc-------CCcCCHHHHHHHHHh
Confidence            378899999999999999887642  34678999999999992       247899999876543

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}

Probab=97.29  E-value=0.0002  Score=59.92  Aligned_cols=53  Identities=25%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCC---Ccc--eEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQ---NLG--LDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~---~~~--i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+.+|+|++|++++.|...-  .+.   +.+  |.|+|..+||.       .++.|++++++.
T Consensus        96 rG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~~g~~~v~~~~~~~EE~-------~g~~G~~~~~~~  153 (364)
T 2rb7_A           96 RGANDDKYAVALGLVMFRDRLNAL--KAAGRSQKDMALGLLITGDEEI-------GGMNGAAKALPL  153 (364)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHH--HHTTCCGGGCCEEEEEESCGGG-------TSTTTHHHHGGG
T ss_pred             cccccccHHHHHHHHHHHHHHHhC--CCCcccCCCccEEEEEEecccc-------CchhhHHHHHhc
Confidence            378899999999999999998741  123   346  99999999992       257899988744

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1

Probab=97.13  E-value=0.00075  Score=57.93  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=44.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|++++.|...-  .+++.+|.|+|+.+||        .+..|++++++.
T Consensus       115 rG~~D~K~~~a~~l~a~~~l~~~~--~~~~~~i~~i~~~~EE--------~g~~G~~~~~~~  166 (470)
T 1lfw_A          115 RGSADDKGPSLTAYYGMLLLKEAG--FKPKKKIDFVLGTNEE--------TNWVGIDYYLKH  166 (470)
T ss_dssp             TTSSSSHHHHHHHHHHHHHHHHHT--CCCSSEEEEEEESCTT--------TTCHHHHHHHHH
T ss_pred             CCcccChHHHHHHHHHHHHHHHcC--CCCCCCEEEEEecCcc--------cCCccHHHHHHh
Confidence            478999999999999999998741  3467899999999999        567899998865

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}

Probab=97.09  E-value=0.00077  Score=57.16  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      |+.|+-+|+|++|++++.|....  .+++.+|.|+|..+||        .+..|++++.+
T Consensus       141 G~~D~k~~~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~g~~G~~~~~~  190 (433)
T 3pfo_A          141 GAQDMKGGVSAMIFALDAIRTAG--YAPDARVHVQTVTEEE--------STGNGALSTLM  190 (433)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTT--EEESSCEEEEEESCTT--------TTCHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHHHcC--CCCCccEEEEEEecCc--------cCChhHHHHHh
Confidence            89999999999999999998731  2457789999999999        55578887763

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A

Probab=97.00  E-value=0.00091  Score=56.62  Aligned_cols=57  Identities=11%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      -|..|+..|+|++|++++.|....  .+++.+|.|+|+.+||.-.   ...++.||++++..
T Consensus        90 ~g~~D~k~g~a~~l~a~~~l~~~~--~~~~~~v~~i~~~~EE~~~---~~~g~~Gs~~~~~~  146 (423)
T 1z2l_A           90 GGNLDGQFGALAAWLAIDWLKTQY--GAPLRTVEVVAMAEEEGSR---FPYVFWGSKNIFGL  146 (423)
T ss_dssp             BCSSTTHHHHHHHHHHHHHHHHHH--CSCSEEEEEEEESCSSCCS---SSCSCHHHHHHTTC
T ss_pred             CCccCCHHHHHHHHHHHHHHHHcC--CCCCCCEEEEEEcCccccc---cCCCcccHHHHHcC
Confidence            477899999999999999998742  3567899999999999210   01267899998863

>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}

Probab=96.94  E-value=0.00049  Score=58.39  Aligned_cols=65  Identities=18%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      .|-||-+||+++||+++.|+.    ..++.++.++|.+-||        -|+.|++..+....                .
T Consensus       179 ~~lDnr~g~~~~l~~l~~l~~----~~~~~~v~~~ft~qEE--------vG~~Ga~~a~~~~~----------------p  230 (355)
T 3kl9_A          179 KAWDNRYGVLMVSELAEALSG----QKLGNELYLGSNVQEE--------VGLRGAHTSTTKFD----------------P  230 (355)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSS----CCCSSEEEEEEESCCT--------TTSHHHHHHHHHHC----------------C
T ss_pred             eccccHHHHHHHHHHHHHhhh----cCCCceEEEEEECccc--------cCcchhHHHHhccC----------------C
Confidence            688999999999999999875    4578899999999999        78888876664431                2


Q ss_pred             eeEEEeccCCCCC
Q psy571           87 DMLVLLDLLGTSN   99 (162)
Q Consensus        87 ~~~i~lDmvG~~~   99 (162)
                      +.+|.+|+..+.+
T Consensus       231 d~~i~~D~~~a~d  243 (355)
T 3kl9_A          231 EVFLAVDCSPAGD  243 (355)
T ss_dssp             SEEEEEEEEECCG
T ss_pred             CEEEEecCccCCC
Confidence            4479999875544

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}

Probab=96.84  E-value=0.0026  Score=55.07  Aligned_cols=66  Identities=18%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      .|+.|+=.|+|++|..++.|...-  ..+. +|.|+|-.+||        .+..|++++++...+           .+++
T Consensus       126 rG~~D~K~~~a~~l~a~~~l~~~~--~~~~-~v~~~~~~~EE--------~g~~g~~~~~~~~~~-----------~~~~  183 (472)
T 3pfe_A          126 RGGADDGYSAYASLTAIRALEQQG--LPYP-RCILIIEACEE--------SGSYDLPFYIELLKE-----------RIGK  183 (472)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHTT--CCCE-EEEEEEESCGG--------GTSTTHHHHHHHHHH-----------HHCC
T ss_pred             eCcccCcHHHHHHHHHHHHHHHcC--CCCC-cEEEEEEeCCC--------CCChhHHHHHHHhHh-----------hccC
Confidence            488899999999999999998631  2344 89999999999        556799999865421           1334


Q ss_pred             eeeEEEec
Q psy571           86 MDMLVLLD   93 (162)
Q Consensus        86 i~~~i~lD   93 (162)
                      +++++.+|
T Consensus       184 ~d~~~~~~  191 (472)
T 3pfe_A          184 PSLVICLD  191 (472)
T ss_dssp             CSEEEEEC
T ss_pred             CCEEEEeC
Confidence            66666666

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A

Probab=96.83  E-value=0.004  Score=51.30  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHHHHHh
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAAKWER   70 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~~~~~   70 (162)
                      |+.|+-.|+|++|..++.|....  .+++.+|.|+|..+||        .+ ..||+++++.+..
T Consensus        97 G~~D~k~g~~~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~~~~~G~~~~~~~~~~  151 (377)
T 3isz_A           97 GAADMKGSLAAMIVAAEEYVKAN--PNHKGTIALLITSDEE--------ATAKDGTIHVVETLMA  151 (377)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHC--TTCSSEEEEEEESCSS--------SCCSSSHHHHHHHHHH
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhC--CCCCceEEEEEEcccc--------cCccccHHHHHHHHHh
Confidence            77799999999999998887641  3467899999999999        33 4699999876543

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}

Probab=96.70  E-value=0.0019  Score=53.61  Aligned_cols=51  Identities=22%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc--cchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI--WGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l--~GS~~~a~~   67 (162)
                      .|+.|+-+|+|++|++++.|...   ..++.+|.|+|..+||        .+.  .|++++++.
T Consensus        99 ~G~~D~K~~~a~~l~a~~~l~~~---~~~~~~v~~~~~~~EE--------~g~~~~G~~~~~~~  151 (369)
T 3tx8_A           99 CGTVDMKSGLAVYLHTFATLATS---TELKHDLTLIAYECEE--------VADHLNGLGHIRDE  151 (369)
T ss_dssp             SSTTTTHHHHHHHHHHHHHHTSC---TTCCSEEEEEEECCCS--------SCTTSCHHHHHHHH
T ss_pred             CCcccchHHHHHHHHHHHHHHhh---cCCCccEEEEEEeccc--------cCcccccHHHHHHh
Confidence            48889999999999999999752   3567899999999999        443  688888865

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}

Probab=96.67  E-value=0.001  Score=55.30  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      .|+..|+|++|++++.|...   ..++.+|.|+|+.+||        .+..||+++.
T Consensus       107 ~D~k~g~a~~l~a~~~l~~~---~~~~~~v~~~~~~~EE--------~g~~Ga~~~~  152 (373)
T 3gb0_A          107 ADDKAGLASMFEAIRVLKEK---NIPHGTIEFIITVGEE--------SGLVGAKALD  152 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---TCCCCCEEEEEESCGG--------GTSHHHHHSC
T ss_pred             cccHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEeccc--------cCchhhhhhC
Confidence            38889999999999999874   3356889999999999        5678998774

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A

Probab=96.57  E-value=0.003  Score=55.08  Aligned_cols=53  Identities=13%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      .|+.|+-.|+|++|..++.|...-  .+++.+|.|+|..+||        .+..|++++.+..
T Consensus       134 rG~~D~Kg~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~g~~~~~~~~  186 (492)
T 3khx_A          134 RGTLDDKGPTIAAYYAIKILEDMN--VDWKKRIHMIIGTDEE--------SDWKCTDRYFKTE  186 (492)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSEEEEEEECCTT--------CCCCTTSHHHHHS
T ss_pred             cCCccCcHHHHHHHHHHHHHHHcC--CCCCCCEEEEEECCcc--------CCCcCHHHHHHhC
Confidence            389999999999999999998731  2567899999999999        5667999998763

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A

Probab=96.54  E-value=0.0033  Score=52.35  Aligned_cols=45  Identities=20%  Similarity=0.186  Sum_probs=38.3

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCC-CccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAED-SIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~-~l~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|+.++.         ++.+|.|+|..+||        . ++.|++++++.
T Consensus       102 rG~~D~k~g~a~~l~a~~~---------~~~~v~~~~~~~EE--------~~g~~G~~~~~~~  147 (369)
T 2f7v_A          102 LGVCDIKGAAAALVAAANA---------GDGDAAFLFSSDEE--------ANDPRCIAAFLAR  147 (369)
T ss_dssp             TTTTTTHHHHHHHHHHHTT---------CCCCEEEEEESCTT--------SSSCCHHHHHHTT
T ss_pred             cccccccHHHHHHHHHHhc---------CCCCEEEEEEeCcc--------cCCCcCHHHHHhc
Confidence            4789999999999999876         24689999999999        5 77899988853

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}

Probab=96.48  E-value=0.0017  Score=54.71  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=38.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571           10 DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus        10 DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      |+.+|||++|++++.|...   ..++.+|.|+|+.+||        .++.|++++.
T Consensus       129 D~k~g~a~~l~a~~~l~~~---~~~~~~v~~~~~~~EE--------~g~~Ga~~~~  173 (396)
T 3rza_A          129 DDKAGLAAMLEVLQVIKEQ---QIPHGQIQFVITVGEE--------SGLIGAKELN  173 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TCCCCCEEEEEESCGG--------GTSHHHHHCC
T ss_pred             ccHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccc--------cccHhHhhhc
Confidence            8889999999999999874   3356899999999999        5678998764

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A

Probab=96.42  E-value=0.0032  Score=54.51  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      |.-|+..|+|++|++++.|...-  .+++.+|.|+|+.+||.-.   -..++.||++++.
T Consensus       121 g~~D~k~gvaa~L~a~~~L~~~~--~~~~~~v~lif~~dEE~~~---~~~g~~Gs~~l~~  175 (474)
T 2v8h_A          121 GKYDGILGVLAGLEVLRTFKDNN--YVPNYDVCVVVWFNAEGAR---FARSCTGSSVWSH  175 (474)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHT--CCCSSCEEEEECTTCSCSS---SSCTTHHHHHHTT
T ss_pred             CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCEEEEEECCccCCC---CCCCcccHHHHHh
Confidence            44599999999999999998741  3457899999999999200   0026789999975

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A

Probab=96.37  E-value=0.0051  Score=52.20  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571           13 VPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus        13 sg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+|++|++++.|....  .+++.+|.|+|..+||         +..|++++++.
T Consensus       120 ~~~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE---------g~~G~~~~~~~  163 (418)
T 1xmb_A          120 GHVTMLLGAAKILHEHR--HHLQGTVVLIFQPAEE---------GLSGAKKMREE  163 (418)
T ss_dssp             HHHHHHHHHHHHHHHTG--GGCSSEEEEEEECCTT---------TTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcc--ccCCceEEEEEecccc---------ccccHHHHHHc
Confidence            69999999999998741  2467899999999999         34799988853

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}

Probab=96.31  E-value=0.0016  Score=55.62  Aligned_cols=48  Identities=13%  Similarity=0.122  Sum_probs=39.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      |+.|+-.|+|++|++++.|...-  ..++.+|.|+|..+||        .+ .|++++.
T Consensus       163 ~~~D~K~gva~~l~a~~~L~~~~--~~~~~~i~~if~~~EE--------~g-~Ga~~~~  210 (434)
T 3ife_A          163 LGADDKAGLTEIMVAMNYLIHNP--QIKHGKIRVAFTPDEE--------IG-RGPAHFD  210 (434)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCT--TSCBCCEEEEEESCGG--------GT-CTGGGCC
T ss_pred             hhhhhHHHHHHHHHHHHHHHhCC--CCCCCCEEEEEECCcc--------cC-hHHHHhh
Confidence            46899999999999999998631  2467899999999999        45 6888763

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1

Probab=96.12  E-value=0.015  Score=48.98  Aligned_cols=44  Identities=25%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571           13 VPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus        13 sg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+|++|++++.|....  .+++.+|.|+|..+||        . ..|++++++.
T Consensus       126 g~~a~~l~a~~~l~~~~--~~~~~~v~~~~~~~EE--------~-~~G~~~~~~~  169 (404)
T 1ysj_A          126 FHTASIIGTAMLLNQRR--AELKGTVRFIFQPAEE--------I-AAGARKVLEA  169 (404)
T ss_dssp             HHHHHHHHHHHHHHTCG--GGCSSEEEEEEESCTT--------T-TCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcc--ccCCceEEEEEecccc--------c-chhHHHHHhc
Confidence            68999999999998731  3467899999999999        3 4799988853

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A

Probab=96.10  E-value=0.002  Score=54.43  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA   65 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a   65 (162)
                      .|+-.|||++|++++.|...   ..++.+|.|+|..+||        .| .|+++++
T Consensus       139 ~D~K~g~a~~l~a~~~l~~~---~~~~~~v~~~~~~~EE--------~g-~Ga~~~~  183 (417)
T 1fno_A          139 ADDKAGVAEIMTALAVLKGN---PIPHGDIKVAFTPDEE--------VG-KGAKHFD  183 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS---SCCCCCEEEEEESCGG--------GT-CTTTTCC
T ss_pred             cccHHhHHHHHHHHHHHHhC---CCCCCcEEEEEEeccc--------cC-CChhhhc
Confidence            78889999999999999873   2356799999999999        45 6888776

>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4

Probab=95.85  E-value=0.0098  Score=48.98  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      +.|+-+|||++|++++.+..    ..++..+.++|+.+||        .|+.|++..+.
T Consensus       167 ~~D~k~g~aa~l~al~~l~~----~~~~~~~~~~~t~~EE--------vG~~Ga~~~~~  213 (348)
T 1ylo_A          167 AFDDRLSCYLLVTLLRELHD----AELPAEVWLVASSSEE--------VGLRGGQTATR  213 (348)
T ss_dssp             THHHHHHHHHHHHHHHHHTT----CCCSSEEEEEEESCCT--------TSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhhh----cCCCceEEEEEEcccc--------cchhHHHHhhc
Confidence            57888999999999999865    3456789999999999        78889887653

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}

Probab=95.42  E-value=0.031  Score=47.94  Aligned_cols=44  Identities=32%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571           13 VPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus        13 sg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .++|++|.+|+.|....  .+++.+|.|+|..+||        . ..|++++++.
T Consensus       153 ~~~a~~l~aa~~L~~~~--~~~~g~v~l~f~p~EE--------~-~~Ga~~~i~~  196 (445)
T 3io1_A          153 GHTAIGLGLAHVLKQYA--AQLNGVIKLIFQPAEE--------G-TRGARAMVAA  196 (445)
T ss_dssp             THHHHHHHHHHHHHHTG--GGCCSEEEEEEESCTT--------T-TCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCc--CcCCceEEEEEecccc--------c-cchHHHHHHc
Confidence            46999999999998742  3567899999999999        2 3699988753

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}

Probab=95.09  E-value=0.0089  Score=51.69  Aligned_cols=46  Identities=24%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             CCC---CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            7 GAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~---DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      |++   |+..|||++|++++..      ..++.+|.|+|+.+||        .++.|++++++
T Consensus       110 G~~lgaD~k~g~a~~l~a~~~~------~~~~~~v~~~~~~~EE--------~g~~Ga~~~~~  158 (487)
T 2qyv_A          110 GTTLGADNGIGMASALAVLESN------DIAHPELEVLLTMTEE--------RGMEGAIGLRP  158 (487)
T ss_dssp             TBCCCHHHHHHHHHHHHHHHCS------SSCCSSEEEEEESCTT--------TTCHHHHTCCS
T ss_pred             CCCcCCcCHHHHHHHHHHHHhC------CCCCCCEEEEEEeccc--------cCCHHHHHHHH
Confidence            665   8999999999998631      2356789999999999        67789987764

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}

Probab=94.82  E-value=0.01  Score=51.71  Aligned_cols=46  Identities=24%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             CCC---CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            7 GAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~---DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      |++   |+.+|+|++|.+++   ..   ..+..+|.|+|..+||        .++.|++++.+
T Consensus       113 G~~lgaD~k~g~a~~l~~l~---~~---~~~~~~v~~~~~~~EE--------~g~~Ga~~~~~  161 (490)
T 3mru_A          113 GTTLGADNGIGMASCLAVLA---SK---EIKHGPIEVLLTIDEE--------AGMTGAFGLEA  161 (490)
T ss_dssp             TBCCCHHHHTTHHHHHHHHH---CS---SCCCCSEEEEEESCSS--------STTGGGGTCCS
T ss_pred             CCccCCCCHHHHHHHHHHHH---hC---CCCCCCEEEEEEcccc--------cccHhHHHhhh
Confidence            666   88999999998752   21   3456789999999999        67789987763

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}

Probab=94.45  E-value=0.042  Score=46.29  Aligned_cols=43  Identities=12%  Similarity=-0.072  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchH-HHHHH
Q psy571           15 CAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGAR-HLAAK   67 (162)
Q Consensus        15 ~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~-~~a~~   67 (162)
                      +|++|..|+.|....  ..++.+|.|+|+.+||        .+ ..||+ ++++.
T Consensus        99 ~a~~l~aa~~L~~~~--~~~~g~v~~~f~~~EE--------~~~~~Ga~~~~~~~  143 (394)
T 3ram_A           99 GTASVLGAIGLKQVI--DQIGGKVVVLGCPAEE--------GGENGSAKASYVKA  143 (394)
T ss_dssp             HHHHHHHHHHHHTTH--HHHCSEEEEEECCCTT--------CCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhH--hhCCceEEEEEECCcc--------CCCCCchHHHHHHc
Confidence            577888899887632  2457889999999999        45 58999 77754

>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=94.20  E-value=0.017  Score=47.67  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=37.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHH
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHL   64 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~   64 (162)
                      +.||-+|||++|++++.|..    ..++..+.++|++.||        .|+.|++..
T Consensus       170 ~~D~r~g~aa~l~al~~l~~----~~~~~~~~~~~t~~EE--------vG~~Ga~~~  214 (346)
T 1vho_A          170 ALDNRASCGVLVKVLEFLKR----YDHPWDVYVVFSVQEE--------TGCLGALTG  214 (346)
T ss_dssp             THHHHHHHHHHHHHHHHHTT----CCCSSEEEEEEECTTS--------SSHHHHHHT
T ss_pred             cCccHHHHHHHHHHHHHhhh----cCCCceEEEEEECCcc--------cchhhHHHH
Confidence            57899999999999999865    3355689999999999        677787754

>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}

Probab=93.37  E-value=0.051  Score=44.76  Aligned_cols=60  Identities=15%  Similarity=-0.014  Sum_probs=43.3

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571            8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD   87 (162)
Q Consensus         8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~   87 (162)
                      +.||-+|||++|++++.+      +   . |.++|++.||        -|+.|++..+....+. .           +.+
T Consensus       163 ~~D~k~G~aa~l~al~~l------~---~-i~~~~t~~EE--------vG~~Ga~~a~~~~~~~-~-----------~~~  212 (321)
T 3cpx_A          163 YLDDRLGVWTALELAKTL------E---H-GIIAFTCWEE--------HGGGSVAYLARWIYET-F-----------HVK  212 (321)
T ss_dssp             THHHHHHHHHHHHHTTTC------C---S-EEEEEESSTT--------TTCCSHHHHHHHHHHH-H-----------CCC
T ss_pred             CCcCHHHHHHHHHHHHHh------c---C-cEEEEECCcc--------Cchhcchhhhhccccc-c-----------CCC
Confidence            679999999999998865      2   1 8899999999        7888998755321111 1           235


Q ss_pred             eEEEeccCCC
Q psy571           88 MLVLLDLLGT   97 (162)
Q Consensus        88 ~~i~lDmvG~   97 (162)
                      ++|.+|+-..
T Consensus       213 ~~i~~D~~~~  222 (321)
T 3cpx_A          213 QSLICDITWV  222 (321)
T ss_dssp             EEEECCCEEC
T ss_pred             EEEEEeCccc
Confidence            6777777543

>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}

Probab=90.35  E-value=0.083  Score=44.52  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM   86 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i   86 (162)
                      .|-||=+||+++||+++.++      . +.++.++|.+-||        -|+-|++..+..     .           ..
T Consensus       177 ~~lDdR~g~~~~l~~l~~l~------~-~~~~~~~ft~qEE--------VG~~Ga~~aa~~-----i-----------~p  225 (343)
T 3isx_A          177 KAMDDRIGCAVIVEVFKRIK------P-AVTLYGVFSVQEE--------VGLVGASVAGYG-----V-----------PA  225 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHHCC------C-SSEEEEEEECCCC--------TTSCCSTTTGGG-----C-----------CC
T ss_pred             ccCccHHHHHHHHHHHHhcc------C-CCeEEEEEECCcc--------cCchhHHHHhhc-----C-----------CC
Confidence            57799999999999988763      2 5789999999999        777787633311     1           12


Q ss_pred             eeEEEeccCCCC
Q psy571           87 DMLVLLDLLGTS   98 (162)
Q Consensus        87 ~~~i~lDmvG~~   98 (162)
                      +.+|.+|+.-+.
T Consensus       226 d~~i~vDv~~a~  237 (343)
T 3isx_A          226 DEAIAIDVTDSA  237 (343)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CEEEEEeCcCCC
Confidence            457889986443

>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}

Probab=80.82  E-value=0.86  Score=39.44  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             Ccc--CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccc
Q psy571            4 PFI--GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLT   81 (162)
Q Consensus         4 ~f~--GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~   81 (162)
                      .|+  .+-||=++|+++|+..+.++      +.+..|.++| |-||        -|+-|++--+..+.    |      .
T Consensus       227 ~~I~s~~lDdr~~~~~~l~al~~~~------~~~~~v~~~f-d~EE--------VGs~ga~gA~s~~~----~------~  281 (428)
T 2ijz_A          227 EFIAGARLDNLLSCHAGLEALLNAE------GDENCILVCT-DHEE--------VGSCSHCGADGPFL----E------Q  281 (428)
T ss_dssp             SSSSCCCSSCSSTTTTTTTHHHHTT------SCSSSCEEEE-CBSC--------TTTTCHHHHSSCCT----T------T
T ss_pred             CeEEeecCccHHHHHHHHHHHHhcc------cCCceEEEEE-eccc--------cCccchhhhhcccc----H------H
Confidence            455  78899999999999987663      2446775544 9999        66667653332111    1      1


Q ss_pred             cccce-------------eeEEEeccCCCCCCcc
Q psy571           82 KLDRM-------------DMLVLLDLLGTSNPRF  102 (162)
Q Consensus        82 ~l~~i-------------~~~i~lDmvG~~~~~~  102 (162)
                      -+.+|             ..+|.+|+.-+.+|.+
T Consensus       282 ~l~ri~~~~~~~~~~~~~s~~is~Dv~ha~~Pn~  315 (428)
T 2ijz_A          282 VLRRLLPEGDAFSRAIQRSLLVSADNAHGVHPNY  315 (428)
T ss_dssp             SCCSSSSSSSSSTTTTTSCCEEEECCCCCCCSSC
T ss_pred             HHHHhhhhhhHHHhhhhcCEEEEEecccccCCCC
Confidence            23333             7889999977644543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d2afwa1	329	c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf	4e-25

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (239), Expect = 4e-25
 Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 10/168 (5%)

Query: 1   MASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLG------LDLIFFDGEEAFNEWSA 54
               F+GATDSAVPCAM+L +AR + ++L  L           L LIFFDGEEAF  WS 
Sbjct: 118 NNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSP 177

Query: 55  EDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYK 114
           +DS++G+RHLAAK   +      +  ++L  MD+LVLLDL+G  NP F +++P + +W++
Sbjct: 178 QDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFE 237

Query: 115 QLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           +L  IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 238 RLQAIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFLRR 281

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d2afwa1	329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	99.97
d1rtqa_	291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	99.84
d1tkja1	277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	99.83
d1de4c3	294	Transferrin receptor ectodomain, protease-like dom	99.81
d3bi1a3	304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	99.72
d1vhoa2	248	Putative endoglucanase TM1048, catalytic domain {T	98.99
d1yloa2	264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	98.96
d2fvga2	255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	98.46
d1cg2a1	276	Carboxypeptidase G2, catalytic domain {Pseudomonas	98.38
d1vhea2	275	Hypothetical protein YsdC, catalytic domain {Bacil	98.2
d1z2la1	293	Allantoate amidohydrolase AllC catalytic domain {E	98.05
d1y0ya2	255	Frv operon protein FrvX, catalytic domain {Pyrococ	98.0
d2grea2	233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	97.75
g1q7l.1	280	Aminoacylase-1, catalytic domain {Human (Homo sapi	97.67
d1r3na1	322	Peptidase-like beta-alanine synthase, catalytic do	97.67
d1fnoa4	295	Peptidase T (tripeptidase), catalytic domain {Salm	97.57
d1lfwa1	272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	97.39
d1vgya1	262	Succinyl-diaminopimelate desuccinylase, catalytic	96.98
d1xmba1	273	IAA-amino acid hydrolase, catalytic domain {Mouse-	92.12
d1ysja1	261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	88.55

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-32  Score=225.11  Aligned_cols=157  Identities=45%  Similarity=0.793  Sum_probs=130.6

Q ss_pred             CCCccCCCCCchHHHHHHHHHHHHHHHhhc------cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhccccc
Q psy571            2 ASPFIGATDSAVPCAMLLYIARLMRQELSQ------LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQH   75 (162)
Q Consensus         2 ~~~f~GA~DnAsg~A~lLeiAr~l~~~~~~------~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~   75 (162)
                      +++++||+|||||||+|||+||+|++...+      .+++++|+||||||||....|++.++|+||++||+.+.....+.
T Consensus       119 ~~~~pGA~DnaSGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~f~gEE~G~~~~~~~~l~GS~~~a~~~~~~~~~~  198 (329)
T d2afwa1         119 NRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPP  198 (329)
T ss_dssp             TBCCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHHHHHTSBSST
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEEecccccccccccccccccHHHHHHHhhhccccc
Confidence            357899999999999999999999875321      36799999999999998888999999999999999988776555


Q ss_pred             CCcccccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccC
Q psy571           76 RGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDD  155 (162)
Q Consensus        76 ~~~~~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DD  155 (162)
                      ......++++|.++|||||+|.+++.+..++..+.+++..+.+++.+++..+.....+    ....+|.....++.+.||
T Consensus       199 ~~~~~~~~~~i~~~inlD~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~SD  274 (329)
T d2afwa1         199 GARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHS----LEGRYFQNYSYGGVIQDD  274 (329)
T ss_dssp             TCSSCBTTTTEEEEEEECSCCSSSCCBCCCCGGGHHHHHHHHHHHHHHHHTTCSSSCC----STTCSBCSCCCCSCCCST
T ss_pred             ccccccchhceeeeeeeccccCCCCceeEeecccchHhHHHHHHHHHHHHhhhhcccc----ccccccccccCCCCCCCc
Confidence            4444578899999999999999999999888999999999999999998887765443    133566655557789999


Q ss_pred             cccccCC
Q psy571          156 HLPFYYR  162 (162)
Q Consensus       156 H~PF~~r  162 (162)
                      |.||+++
T Consensus       275 H~pF~~~  281 (329)
T d2afwa1         275 HIPFLRR  281 (329)
T ss_dssp             THHHHTT
T ss_pred             hHHHHHC
Confidence            9999864

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Aeromonas proteolytica [TaxId: 671]

Probab=99.84  E-value=1.8e-21  Score=160.52  Aligned_cols=77  Identities=18%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      ..++||+|||||||+|||+||.|++.-  .+++++|+||||++||        .||+||++|++....           +
T Consensus       110 ~~~~Ga~D~~sGva~~le~ar~l~~~~--~~~~~~i~f~~~~~EE--------~Gl~GS~~~~~~~~~-----------~  168 (291)
T d1rtqa_         110 SVAPGADDDASGIAAVTEVIRVLSENN--FQPKRSIAFMAYAAEE--------VGLRGSQDLANQYKS-----------E  168 (291)
T ss_dssp             CCCCCTTTTHHHHHHHHHHHHHHHHTT--CCCSEEEEEEEESCGG--------GTSHHHHHHHHHHHH-----------T
T ss_pred             CCCCCCccchhhHHHHHHHHHHHHHhh--cCCcCceEEeccccch--------hhccCcHHHHHhhhh-----------h
Confidence            468999999999999999999998631  3678999999999999        899999999987643           3


Q ss_pred             ccceeeEEEeccCCCCCC
Q psy571           83 LDRMDMLVLLDLLGTSNP  100 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~  100 (162)
                      ..+|.++|||||+|..+.
T Consensus       169 ~~~i~~~inlDmvg~~~~  186 (291)
T d1rtqa_         169 GKNVVSALQLDMTNYKGS  186 (291)
T ss_dssp             TCEEEEEEECSCCSCCCS
T ss_pred             cchhhhhhhhhhcccCCC
Confidence            568999999999998654

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=99.83  E-value=4.9e-21  Score=156.64  Aligned_cols=81  Identities=16%  Similarity=0.299  Sum_probs=68.8

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKL   83 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l   83 (162)
                      ..+||+|||||||+|||+||.|....  .+++++|.||||++||        .|++||++|++.+..          .+.
T Consensus        91 ~~~Ga~D~~sgva~~le~ar~l~~~~--~~~~~~i~~~~~~~EE--------~g~~Gs~~~~~~~~~----------~~~  150 (277)
T d1tkja1          91 SGAGINDNGSGSAAVLETALAVSRAG--YQPDKHLRFAWWGAEE--------LGLIGSKFYVNNLPS----------ADR  150 (277)
T ss_dssp             TSCCTTTTHHHHHHHHHHHHHHHHTT--CCCSEEEEEEEESCGG--------GTSHHHHHHHHHSCH----------HHH
T ss_pred             cccccCCCccchHHHHHHHHHHHhhc--CCCCcceEEeeccccc--------ccccccHHHHHHhhc----------cch
Confidence            35799999999999999999998742  3678999999999999        899999999987533          245


Q ss_pred             cceeeEEEeccCCCCCCcccc
Q psy571           84 DRMDMLVLLDLLGTSNPRFYS  104 (162)
Q Consensus        84 ~~i~~~i~lDmvG~~~~~~~~  104 (162)
                      ++|.++|||||+|.+++.+..
T Consensus       151 ~~i~~~inlD~vG~~~~~~~~  171 (277)
T d1tkja1         151 SKLAGYLNFDMIGSPNPGYFV  171 (277)
T ss_dssp             TTEEEEEEECCCCCSSCCCEE
T ss_pred             hheeeeeccccccCCCCceEE
Confidence            789999999999998886544

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-20  Score=154.92  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      .+||+|||||||+|||+||+|+....+  .+|+++|.|++|+|||        .||+||++|++.....          .
T Consensus        99 ~~GA~DnasG~a~llelar~l~~~~~~~g~~P~rtI~f~~~~~EE--------~Gl~GS~~~~~~~~~~----------l  160 (294)
T d1de4c3          99 GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGD--------FGSVGATEWLEGYLSS----------L  160 (294)
T ss_dssp             SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEECCCT--------TTSHHHHHHHHHSHHH----------H
T ss_pred             cccccCCchhHHHHHHHHHHHHhhhhhcCCCCCceEEEEEecCcc--------ccccCHHHHHHhChhh----------h
Confidence            479999999999999999999875332  4789999999999999        8999999999753221          1


Q ss_pred             ccceeeEEEeccCCCCCCccc
Q psy571           83 LDRMDMLVLLDLLGTSNPRFY  103 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~~~~  103 (162)
                      ..++.++|||||.+..+..+.
T Consensus       161 ~~~~~a~iNlD~~~~g~~~~~  181 (294)
T d1de4c3         161 HLKAFTYINLDKAVLGTSNFK  181 (294)
T ss_dssp             TTTEEEEEECTTCBSCSSEEE
T ss_pred             ccceEEEEecccCcCCCCCCc
Confidence            257999999999877665443

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Glutamate carboxypeptidase II FOLH1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.9e-18  Score=139.62  Aligned_cols=81  Identities=17%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK   82 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~   82 (162)
                      ..+||+|||||||+|||+||+|....+. .+|+++|+|++|+|||        .||+||++|++....          ..
T Consensus        92 ~~~Ga~D~~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~~~~EE--------~gl~Gs~~~~~~~~~----------~~  153 (304)
T d3bi1a3          92 WVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEE--------FGLLGSTEWAEENSR----------LL  153 (304)
T ss_dssp             SSCCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESSGG--------GTSHHHHHHHHHHHH----------HH
T ss_pred             ccCCCCCCcchhHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCcc--------ccccchHHHHHhChh----------hh
Confidence            3579999999999999999999775332 4789999999999999        899999999976543          23


Q ss_pred             ccceeeEEEeccCCCCCCcc
Q psy571           83 LDRMDMLVLLDLLGTSNPRF  102 (162)
Q Consensus        83 l~~i~~~i~lDmvG~~~~~~  102 (162)
                      .+++.++||+|+.+..+..+
T Consensus       154 ~~~~va~in~d~~~~g~~~~  173 (304)
T d3bi1a3         154 QERGVAYINADSSIEGNYTL  173 (304)
T ss_dssp             HHHEEEEEECSCSBSCSSEE
T ss_pred             hhCeEEEEeccccccCCCcc
Confidence            46789999999999876544

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Putative endoglucanase TM1048, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=2.5e-11  Score=95.56  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~   66 (162)
                      .+.+|.||++|||+|||+||.|+.    .+++.+|.|+|+++||        .|+.||++++.
T Consensus        79 ~~~~a~Dd~~G~a~~l~~~~~l~~----~~~~~~v~~~~~~~EE--------~G~~Ga~~~~~  129 (248)
T d1vhoa2          79 VVGKALDNRASCGVLVKVLEFLKR----YDHPWDVYVVFSVQEE--------TGCLGALTGAY  129 (248)
T ss_dssp             EEETTHHHHHHHHHHHHHHHHHTT----CCCSSEEEEEEECTTS--------SSHHHHHHTTC
T ss_pred             eeccCCcccHhHHHHHHHHHHHhh----cCCCCceEEEEeeccc--------CCCCcceehhh
Confidence            456799999999999999999987    5678899999999999        89999987753

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase YpdE
species: Shigella flexneri [TaxId: 623]

Probab=98.96  E-value=2.5e-10  Score=90.34  Aligned_cols=52  Identities=17%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      +-+|.||++|||+|||++|.|+.    .+++.+|.|+|+.+||        .|+.||++++...
T Consensus        80 ~g~a~D~~~gva~lle~~r~l~~----~~~~~~v~~~~~~~EE--------~G~~Ga~~~~~~~  131 (264)
T d1yloa2          80 MGKAFDDRLSCYLLVTLLRELHD----AELPAEVWLVASSSEE--------VGLRGGQTATRAV  131 (264)
T ss_dssp             EETTHHHHHHHHHHHHHHHHHTT----CCCSSEEEEEEESCCT--------TSSHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHhc----CCCCceEEEEEEeccc--------cCCCCcccccccc
Confidence            44799999999999999999976    5677899999999999        8999999998653

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Endoglucanase TM1049
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=1.2e-07  Score=73.03  Aligned_cols=70  Identities=13%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      ..||.||++|||++||++|.+.      .+..+|.|+|+++||        .|+.||+.+.......          ...
T Consensus        77 ~~ga~Dd~~Gva~~l~~~~~~~------~~~~~i~~~~t~~EE--------~G~~g~~~~~~~~~~~----------~~~  132 (255)
T d2fvga2          77 VGKAFDDRAGCSVLIDVLESGV------SPAYDTYFVFTVQEE--------TGLRGSAVVVEQLKPT----------CAI  132 (255)
T ss_dssp             EESCHHHHHHHHHHHHHHHTCC------CCSEEEEEEEECCCC-------------CHHHHHHHCCS----------EEE
T ss_pred             cCCcccchHhHHHHHHHHHHhc------ccccceEEEEEeecc--------cCCcchhhhhhhhhhh----------hhh
Confidence            4489999999999999988663      456789999999999        7899999888664321          122


Q ss_pred             ceeeEEEeccCCCC
Q psy571           85 RMDMLVLLDLLGTS   98 (162)
Q Consensus        85 ~i~~~i~lDmvG~~   98 (162)
                      .+......|..+..
T Consensus       133 ~~~~~~~~d~~~~~  146 (255)
T d2fvga2         133 VVETTTAGDNPELE  146 (255)
T ss_dssp             EEEEEEECSCSTTC
T ss_pred             hhcccccccccCCc
Confidence            34555666666643

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Carboxypeptidase G2, catalytic domain
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

Probab=98.38  E-value=3.4e-07  Score=73.14  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      .||.|+.+|+|++|+++|.|....  .+++.+|.|+|+.+||        .|+.||+++.+....              +
T Consensus       112 ~G~~D~k~g~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~g~~~~~~~~~~--------------~  167 (276)
T d1cg2a1         112 PGIADDKGGNAVILHTLKLLKEYG--VRDYGTITVLFNTDEE--------KGSFGSRDLIQEEAK--------------L  167 (276)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHTT--CCCSSEEEEEEESCGG--------GTTTTTHHHHHHHHH--------------H
T ss_pred             cccccccccHHHHHHHHHHHHHcC--CCCCCCEEEEEEcccc--------cccccHHHHHHhccc--------------c
Confidence            699999999999999999998741  3578899999999999        788999999865322              3


Q ss_pred             eeeEEEeccC
Q psy571           86 MDMLVLLDLL   95 (162)
Q Consensus        86 i~~~i~lDmv   95 (162)
                      .+++|++|--
T Consensus       168 ~d~~i~~Ept  177 (276)
T d1cg2a1         168 ADYVLSFEPT  177 (276)
T ss_dssp             CSEEEECCCE
T ss_pred             CCEEEEecCC
Confidence            5677888743

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Hypothetical protein YsdC, catalytic domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=4.7e-07  Score=71.04  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW   68 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~   68 (162)
                      ..||.||++|||++|+++|.|+.    .+++..|.|+|++.||        .|+.|++.++..+
T Consensus        85 ~~~~~Dd~~Gva~~l~~~~~l~~----~~~~~~v~~~~~~~EE--------~G~~Ga~~~~~~~  136 (275)
T d1vhea2          85 LAKAWDNRIGCAIAIDVLRNLQN----TDHPNIVYGVGTVQEE--------VGLRGAKTAAHTI  136 (275)
T ss_dssp             EETTHHHHHHHHHHHHHHHHHHT----SCCSSEEEEEEESCCT--------TTSHHHHHHHHHH
T ss_pred             ccCcccCccCHHHHHHHHHHHhc----CCCCceEEEEEecccc--------cCCcchhhhhhcc
Confidence            45899999999999999999987    5677899999999999        7999999887664

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Allantoate amidohydrolase AllC catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.8e-06  Score=69.07  Aligned_cols=58  Identities=10%  Similarity=0.114  Sum_probs=47.2

Q ss_pred             CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc-ccccCCCCCccchHHHHHH
Q psy571            4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA-FNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~-~~~w~~~~~l~GS~~~a~~   67 (162)
                      +.-|+.|++.||++.||+++.|...-  .+++++|.+|+|++||+ ...    .+++||+.++-.
T Consensus        85 ~~gG~~Dg~~Gv~a~le~~~~l~~~~--~~~~~~i~vv~f~~EEg~rFg----~~~~GS~~~~G~  143 (293)
T d1z2la1          85 VNGGNLDGQFGALAAWLAIDWLKTQY--GAPLRTVEVVAMAEEEGSRFP----YVFWGSKNIFGL  143 (293)
T ss_dssp             TTBCSSTTHHHHHHHHHHHHHHHHHH--CSCSEEEEEEEESCSSCCSSS----CSCHHHHHHTTC
T ss_pred             CCCCCCCCchhHHHHHHHHHHHHhcC--CCCCCCceeeeeecccccccC----cccccchhhcCC
Confidence            44589999999999999999998742  47889999999999993 211    468899988844

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Frv operon protein FrvX, catalytic domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=2.5e-06  Score=67.73  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=53.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR   85 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~   85 (162)
                      -.|.||.+||+++||+++.++      .++.++.|+|++.||        -|+.||+..+..+..          ...-.
T Consensus        15 s~alDdr~g~~~lle~l~~lk------~~~~~l~~vft~qEE--------vG~rGA~~~a~~i~p----------~~~i~   70 (255)
T d1y0ya2          15 SIAFDDRIAVYTILEVAKQLK------DAKADVYFVATVQEE--------VGLRGARTSAFGIEP----------DYGFA   70 (255)
T ss_dssp             ETTHHHHHHHHHHHHHHHHCC------SCSSEEEEEEESCCT--------TTSHHHHHHHHHHCC----------SEEEE
T ss_pred             cccchhHHHHHHHHHHHHHhh------ccCCcEEEEEEcccc--------cCCCcchhhhhhhcc----------cccce
Confidence            478999999999999999884      356789999999999        899999988766432          12234


Q ss_pred             eeeEEEeccCCCC
Q psy571           86 MDMLVLLDLLGTS   98 (162)
Q Consensus        86 i~~~i~lDmvG~~   98 (162)
                      ++..+..|+.+.+
T Consensus        71 ~d~~~a~D~~~~~   83 (255)
T d1y0ya2          71 IDVTIAADIPGTP   83 (255)
T ss_dssp             EEEEECCCSTTCC
T ss_pred             eeeeeccCCCCCc
Confidence            6666777776653

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Deblocking aminopeptidase YhfE
species: Bacillus cereus [TaxId: 1396]

Probab=97.75  E-value=1.1e-05  Score=63.04  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccceee
Q psy571            9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDM   88 (162)
Q Consensus         9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~~   88 (162)
                      +|+-+|||+||+++|.|...-  .+++.+|.|+|+..||        -|+-|++.++                  .++..
T Consensus        70 t~dk~g~a~~l~~~~~l~~~~--~~~~~~i~~~ft~~EE--------~G~~Ga~~~~------------------~~~~~  121 (233)
T d2grea2          70 TLDKVSVAILLKLIKRLQDEN--VTLPYTTHFLISNNEE--------IGYGGNSNIP------------------EETVE  121 (233)
T ss_dssp             BCTHHHHHHHHHHHHHHHHHT--CCCSEEEEEEEESCC------------CCCCCCC------------------TTEEE
T ss_pred             ccccCcHHHHHHHHHHHHHCC--CCCCceEEEEEEeCcc--------cCchhHHhhc------------------cCCcc
Confidence            468999999999999998741  4678999999999999        7888886432                  23566


Q ss_pred             EEEeccCCC
Q psy571           89 LVLLDLLGT   97 (162)
Q Consensus        89 ~i~lDmvG~   97 (162)
                      .|.+|+-..
T Consensus       122 ~iavD~~~~  130 (233)
T d2grea2         122 YLAVDMGAL  130 (233)
T ss_dssp             EEEECCCCC
T ss_pred             cEEEEeccC
Confidence            788887554

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=97.67  E-value=2.4e-05  Score=64.18  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc-ccccCCCCCccchHHHHH
Q psy571            7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA-FNEWSAEDSIWGARHLAA   66 (162)
Q Consensus         7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~-~~~w~~~~~l~GS~~~a~   66 (162)
                      |+-|++.||++.||++|.|...-  ..+++.|.+|+|.+||. ...    .+++||+.++-
T Consensus       105 G~~DG~lGV~a~Levl~~l~e~~--~~~~~~i~vv~f~~EEg~rFg----~~~lGS~~~~G  159 (322)
T d1r3na1         105 GKYDGILGVLAGLEVLRTFKDNN--YVPNYDVCVVVWFNEEGARFA----RSCTGSSVWSH  159 (322)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHTT--CCCSSCEEEEECSCSSCSSBS----STTHHHHHHTT
T ss_pred             CCcCCccchHHHHHHHHHHhhhc--cCCCCCcEEEEeecccccccc----ccccccccccC
Confidence            89999999999999999999742  36889999999999992 211    36899998874

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase T (tripeptidase), catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=2.1e-05  Score=61.10  Aligned_cols=68  Identities=15%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571            5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD   84 (162)
Q Consensus         5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~   84 (162)
                      ...|.|+.+|||++|++++.+...   ..+..+|.|+|...||        -+ +||.+++...              + 
T Consensus       135 ~~~~~D~k~G~aa~l~a~~~l~~~---~~~~~~v~~~~t~~EE--------~~-~gg~~~~~~~--------------~-  187 (295)
T d1fnoa4         135 TLLGADDKAGVAEIMTALAVLKGN---PIPHGDIKVAFTPDEE--------VG-KGAKHFDVEA--------------F-  187 (295)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHSS---SCCCCCEEEEEESCGG--------GT-CTTTTCCHHH--------------H-
T ss_pred             eeecccchhhHHHHHHHHHHHHhc---CCCCCceeccccccee--------cC-cchhhccHhH--------------c-
Confidence            345789999999999999999863   3345679999999999        34 4444443221              1 


Q ss_pred             ceeeEEEeccCCCCC
Q psy571           85 RMDMLVLLDLLGTSN   99 (162)
Q Consensus        85 ~i~~~i~lDmvG~~~   99 (162)
                      +.+..|++|+.+...
T Consensus       188 ~~~~~i~~D~~~~~~  202 (295)
T d1fnoa4         188 GAQWAYTVDGGGVGE  202 (295)
T ss_dssp             CCSEEEECCCCSTTB
T ss_pred             CCcEEEEecCCCccc
Confidence            246789999988754

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

Probab=97.39  E-value=0.00021  Score=56.26  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK   67 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~   67 (162)
                      .|+.|+-.|+|++|++++.|...-  .+++.+|.|+|...||        .|..|+++|.++
T Consensus       115 rG~~D~k~~~~~~~~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~g~~~~~~~  166 (272)
T d1lfwa1         115 RGSADDKGPSLTAYYGMLLLKEAG--FKPKKKIDFVLGTNEE--------TNWVGIDYYLKH  166 (272)
T ss_dssp             TTSSSSHHHHHHHHHHHHHHHHHT--CCCSSEEEEEEESCTT--------TTCHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHhC--CCCCCCEEEEEEcccc--------cCCccHHHHHHh
Confidence            499999999999999999998741  3678999999999999        677899988855

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Succinyl-diaminopimelate desuccinylase, catalytic domain
species: Neisseria meningitidis [TaxId: 487]

Probab=96.98  E-value=0.0016  Score=50.21  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571            6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER   70 (162)
Q Consensus         6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~   70 (162)
                      .||.|.-.|+|++|.+++.+....  ...+..+.|+|...||.       .+..|++++++.+..
T Consensus        96 rGa~D~Kg~~a~~l~a~~~l~~~~--~~~~~~~~l~~~~dEE~-------~~~~G~~~l~~~~~~  151 (262)
T d1vgya1          96 RGAADMKTSIACFVTACERFVAKH--PNHQGSIALLITSDEEG-------DALDGTTKVVDVLKA  151 (262)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHC--TTCSSEEEEEEESCSSS-------CCTTSHHHHHHHHHH
T ss_pred             eccccccccHHHHHHHHHHHHHhc--ccCCCCeEEEEEecCcc-------ccccCHHHHHhHhhh
Confidence            489999999999999999998752  35677899999888772       578999999987654

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: IAA-amino acid hydrolase, catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.12  E-value=0.16  Score=39.52  Aligned_cols=56  Identities=21%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccceeeEEEec
Q psy571           14 PCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLD   93 (162)
Q Consensus        14 g~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~~~i~lD   93 (162)
                      -+|++|-+|+.|....  .+.+-+|+|+|-.+||.         .-|++.+++.             .-+++|+.++-+=
T Consensus       106 h~a~~l~aa~~l~~~~--~~~~g~v~~ifqPaEE~---------~~Ga~~mi~~-------------G~~~~vd~~~~~H  161 (273)
T d1xmba1         106 HVTMLLGAAKILHEHR--HHLQGTVVLIFQPAEEG---------LSGAKKMREE-------------GALKNVEAIFGIH  161 (273)
T ss_dssp             HHHHHHHHHHHHHHTG--GGCSSEEEEEEECCTTT---------TCHHHHHHHT-------------TTTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhh--hcCCCeEEEEEeccccc---------ccchhHHHHc-------------CCcCCCCeeEEEe
Confidence            4789999999998752  34578899999999992         2388877643             3456666665543

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.55  E-value=0.41  Score=36.93  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccceeeEEEe
Q psy571           14 PCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLL   92 (162)
Q Consensus        14 g~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~~~i~l   92 (162)
                      -+|++|-+|+.|....  .+.+-+|+|+|-.+||        . .-|++.+++.             .-+++|++++-+
T Consensus       100 h~a~~lgaA~~l~~~~--~~~~G~v~lifqPaEE--------~-~~Ga~~mi~~-------------G~~d~vd~~~~~  154 (261)
T d1ysja1         100 HTASIIGTAMLLNQRR--AELKGTVRFIFQPAEE--------I-AAGARKVLEA-------------GVLNGVSAIFGM  154 (261)
T ss_dssp             HHHHHHHHHHHHHTCG--GGCSSEEEEEEESCTT--------T-TCHHHHHHHT-------------TTTTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhc--ccCCCeEEEecccCcc--------c-ccchHHHHHc-------------CCccccCeeEEE
Confidence            5788999999998742  3456789999999999        2 2488776643             446677776644