Psyllid ID: psy5723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
SGDAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
sgdaglqpggagddgivggprtPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDdragnlgkmdggfagnssgrqqksdpksklsesqkQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGasqfehvptfhglsmSRQINHLSAVIT
Flexible Loop (DISEMBL)
sgdaglqpggagddgivgGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGgfagnssgrqqksdpksklsesqkqvdevvgiMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Low Complexity Region (SEG)
SGDAGLQPggagddgivggPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Disordered region (IsUnstruct)
********************************************I**********************************************************VVGIMRVNVEKV***********************************************
Disordered Region (DISOPRED)
**************************************VDEVVDIMKTNVEKVLERDQKLSELDDRA********************SDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANAL***************LSMSRQINHLSAVIT
Disordered Region (DISEMBL)
SGDAGLQPGGAGDDGIVGGPRTPQQ************QVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAG*********************VDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Disordered Region (DISPRO)
****************************QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDG***GN********DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SGDAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAVIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q60WU2	108	Synaptobrevin-1 OS=Caenor	N/A	N/A	0.388	0.583	0.661	8e-16
O02495	109	Synaptobrevin-1 OS=Caenor	yes	N/A	0.296	0.440	0.791	4e-15
P63025	103	Vesicle-associated membra	yes	N/A	0.382	0.601	0.661	6e-15
P63024	103	Vesicle-associated membra	yes	N/A	0.382	0.601	0.661	6e-15
Q15836	100	Vesicle-associated membra	yes	N/A	0.370	0.6	0.666	1e-14
Q2KJD2	104	Vesicle-associated membra	yes	N/A	0.296	0.461	0.791	1e-14
Q4R8T0	100	Vesicle-associated membra	N/A	N/A	0.296	0.48	0.791	1e-14
P63045	116	Vesicle-associated membra	no	N/A	0.296	0.413	0.791	1e-14
P63044	116	Vesicle-associated membra	no	N/A	0.296	0.413	0.791	1e-14
Q9N0Y0	116	Vesicle-associated membra	yes	N/A	0.296	0.413	0.791	1e-14

>sp|Q60WU2|SYB1_CAEBR Synaptobrevin-1 OS=Caenorhabditis briggsae GN=snb-1 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 51/65 (78%)

Query: 76  GFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQG 135
           G AG   G Q       +L ++Q QVDEVVGIM+VNVEKVLERDQKLS+LD+RA+ALQ+G
Sbjct: 5   GDAGAQGGSQGPRPSNKRLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEG 64

Query: 136 ASQFE 140
           ASQFE
Sbjct: 65  ASQFE 69

Involved in the targeting and/or fusion of transport vesicles to their target membrane. Acts in neuronal exocytosis of synaptic transmission. Likely to have a role in cholinergic transmisson. Required for viability, coordinated movement and M3 pharynx motor neuron function.
Caenorhabditis briggsae (taxid: 6238)

>sp|O02495|SYB1_CAEEL Synaptobrevin-1 OS=Caenorhabditis elegans GN=snb-1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 46/48 (95%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVVGIM+VNVEKVLERDQKLS+LD+RA+ALQ+GASQFE
Sbjct: 23  RLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFE 70

Involved in the targeting and/or fusion of transport vesicles to their target membrane. Acts in neuronal exocytosis of synaptic transmission. Likely to have a role in cholinergic transmisson. Required for viability, coordinated movement and M3 pharynx motor neuron function.

Caenorhabditis elegans (taxid: 6239)

>sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 OS=Rattus norvegicus GN=Vamp3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 48/62 (77%)

Query: 79  GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
           G  SG    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct: 4   GVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 63

Query: 139 FE 140
           FE
Sbjct: 64  FE 65

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 OS=Mus musculus GN=Vamp3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 48/62 (77%)

Query: 79  GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
           G  SG    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct: 4   GVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 63

Query: 139 FE 140
           FE
Sbjct: 64  FE 65

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q15836|VAMP3_HUMAN Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 81  SSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           S+G    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 2   STGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 61

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q2KJD2|VAMP3_BOVIN Vesicle-associated membrane protein 3 OS=Bos taurus GN=VAMP3 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 18  RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 65

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|Q4R8T0|VAMP3_MACFA Vesicle-associated membrane protein 3 OS=Macaca fascicularis GN=VAMP3 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 14  RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 61

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Macaca fascicularis (taxid: 9541)

>sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 OS=Rattus norvegicus GN=Vamp2 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 78

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Rattus norvegicus (taxid: 10116)

>sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 OS=Mus musculus GN=Vamp2 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 78

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Mus musculus (taxid: 10090)

>sp|Q9N0Y0|VAMP2_MACMU Vesicle-associated membrane protein 2 OS=Macaca mulatta GN=VAMP2 PE=3 SV=3

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 78

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Macaca mulatta (taxid: 9544)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
170062609	164	conserved hypothetical protein [Culex qu	0.407	0.402	0.884	1e-24
170047894	158	conserved hypothetical protein [Culex qu	0.432	0.443	0.849	2e-24
357617484	119	hypothetical protein KGM_12867 [Danaus p	0.530	0.722	0.670	4e-22
242247607	117	n-synaptobrevin [Acyrthosiphon pisum] gi	0.617	0.854	0.566	1e-21
194864908	217	GG14581 [Drosophila erecta] gi|190652950	0.691	0.516	0.529	3e-21
158294276	178	AGAP005507-PB [Anopheles gambiae str. PE	0.586	0.533	0.594	3e-21
345495213	124	PREDICTED: synaptobrevin-like isoform 2	0.586	0.766	0.594	3e-21
345495211	130	PREDICTED: synaptobrevin-like isoform 1	0.586	0.730	0.594	4e-21
195490476	223	GE20941 [Drosophila yakuba] gi|194179257	0.691	0.502	0.529	4e-21
195336642	221	GM14195 [Drosophila sechellia] gi|194128	0.722	0.529	0.527	4e-21

>gi|170062609|ref|XP_001866744.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167880478|gb|EDS43861.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 62/69 (89%), Gaps = 3/69 (4%)

Query: 5  GLQPGGAGD---DGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLS 61
          GL PG AG+   DGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLS
Sbjct: 16 GLAPGAAGEPGADGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLS 75

Query: 62 ELDDRAGNL 70
          ELDDRA  L
Sbjct: 76 ELDDRADAL 84

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047894|ref|XP_001851440.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870138|gb|EDS33521.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 63/73 (86%), Gaps = 3/73 (4%)

Query: 1  SGDAGLQPGGAGD---DGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD 57
          S   GL PG AG+   DGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD
Sbjct: 16 SAPDGLAPGAAGEPGADGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD 75

Query: 58 QKLSELDDRAGNL 70
          QKLSELDDRA  L
Sbjct: 76 QKLSELDDRADAL 88

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617484|gb|EHJ70821.1| hypothetical protein KGM_12867 [Danaus plexippus]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 68/94 (72%), Gaps = 8/94 (8%)

Query: 1  SGDAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKL 60
          + + GL P G  DD  VGGP+TPQQIAAQ+RLQQTQAQVDEVVDIMKTNVEKVLERDQKL
Sbjct: 5  AAEGGLAPNG--DDMPVGGPKTPQQIAAQRRLQQTQAQVDEVVDIMKTNVEKVLERDQKL 62

Query: 61 SELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKL 94
          SELDDRA  L +      G S   QQ    KSK 
Sbjct: 63 SELDDRADALQQ------GASQFEQQAGKLKSKF 90

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247607|ref|NP_001156248.1| n-synaptobrevin [Acyrthosiphon pisum] gi|239793435|dbj|BAH72834.1| ACYPI007508 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 74/106 (69%), Gaps = 6/106 (5%)

Query: 11  AGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
           AGDD +VGGP+TPQQIAAQKRLQQTQAQVDEVVDIMKTNV KVL+RDQKLSELDDRA  L
Sbjct: 11  AGDDTVVGGPKTPQQIAAQKRLQQTQAQVDEVVDIMKTNVMKVLDRDQKLSELDDRADAL 70

Query: 71  GKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
            +      G S   QQ    K K      ++  ++G++ + +  ++
Sbjct: 71  QQ------GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVILAII 110

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864908|ref|XP_001971167.1| GG14581 [Drosophila erecta] gi|190652950|gb|EDV50193.1| GG14581 [Drosophila erecta]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 79/119 (66%), Gaps = 7/119 (5%)

Query: 8   PGGAGDDG-IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDR 66
           P G G DG IVGGP  PQQIAAQKRLQQTQAQVDEVVDIM+TNVEKVLERD KLSELDDR
Sbjct: 26  PAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDR 85

Query: 67  AGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125
           A  L +      G S   QQ    K K      ++  ++G++ + V  ++ + ++++ L
Sbjct: 86  ADALQQ------GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKRRRINTL 138

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294276|ref|XP_001688670.1| AGAP005507-PB [Anopheles gambiae str. PEST] gi|158294278|ref|XP_001688671.1| AGAP005507-PA [Anopheles gambiae str. PEST] gi|157015489|gb|EDO63676.1| AGAP005507-PB [Anopheles gambiae str. PEST] gi|157015490|gb|EDO63677.1| AGAP005507-PA [Anopheles gambiae str. PEST]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 6/101 (5%)

Query: 16  IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDG 75
           IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRA  L +   
Sbjct: 22  IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRADALQQ--- 78

Query: 76  GFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
              G S   QQ    K K      ++  ++G++ + +  ++
Sbjct: 79  ---GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVILAII 116

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495213|ref|XP_003427457.1| PREDICTED: synaptobrevin-like isoform 2 [Nasonia vitripennis] gi|345495215|ref|XP_003427458.1| PREDICTED: synaptobrevin-like isoform 3 [Nasonia vitripennis]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 6/101 (5%)

Query: 16  IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDG 75
           IVGGPRTPQQ+AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRA  L +   
Sbjct: 25  IVGGPRTPQQVAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRADALQQ--- 81

Query: 76  GFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
              G S   QQ    K K      ++  ++G++ + V  ++
Sbjct: 82  ---GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLIVLAII 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495211|ref|XP_001604664.2| PREDICTED: synaptobrevin-like isoform 1 [Nasonia vitripennis]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 6/101 (5%)

Query: 16  IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDG 75
           IVGGPRTPQQ+AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRA  L +   
Sbjct: 25  IVGGPRTPQQVAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRADALQQ--- 81

Query: 76  GFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
              G S   QQ    K K      ++  ++G++ + V  ++
Sbjct: 82  ---GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLIVLAII 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490476|ref|XP_002093156.1| GE20941 [Drosophila yakuba] gi|194179257|gb|EDW92868.1| GE20941 [Drosophila yakuba]

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 79/119 (66%), Gaps = 7/119 (5%)

Query: 8   PGGAGDDG-IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDR 66
           P G G DG IVGGP  PQQIAAQKRLQQTQAQVDEVVDIM+TNVEKVLERD KLSELDDR
Sbjct: 26  PTGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDR 85

Query: 67  AGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125
           A  L +      G S   QQ    K K      ++  ++G++ + V  ++ + ++++ L
Sbjct: 86  ADALQQ------GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKRRRINTL 138

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336642|ref|XP_002034944.1| GM14195 [Drosophila sechellia] gi|194128037|gb|EDW50080.1| GM14195 [Drosophila sechellia]

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 80/129 (62%), Gaps = 12/129 (9%)

Query: 8   PGGAGDDG-IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDR 66
           P G G DG IVGGP  PQQIAAQKRLQQTQAQVDEVVDIM+TNVEKVLERD KLSELDDR
Sbjct: 26  PAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDR 85

Query: 67  AGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLER-----DQK 121
           A  L +      G S   QQ    K K      ++  ++G++ + V  ++ +      QK
Sbjct: 86  ADALQQ------GASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKRRRINTQK 139

Query: 122 LSELDNRAN 130
            S L N  N
Sbjct: 140 ASALYNLIN 148

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0013342	192	n-syb "n-synaptobrevin" [Droso	0.561	0.473	0.546	4.6e-18
UNIPROTKB|Q26335	181	n-syb "N-syb protein" [Drosoph	0.561	0.502	0.546	5.8e-18
WB|WBGene00004897	109	snb-1 [Caenorhabditis elegans	0.419	0.623	0.671	4.1e-17
UNIPROTKB|J9P1V7	104	VAMP3 "Uncharacterized protein	0.388	0.605	0.666	7.7e-16
MGI|MGI:1321389	103	Vamp3 "vesicle-associated memb	0.382	0.601	0.661	2.6e-15
RGD|61880	103	Vamp3 "vesicle-associated memb	0.382	0.601	0.661	2.6e-15
UNIPROTKB|I3LVF9	155	VAMP3 "Uncharacterized protein	0.382	0.4	0.645	4.2e-15
UNIPROTKB|F1NTL8	113	VAMP2 "Uncharacterized protein	0.419	0.601	0.614	5.4e-15
UNIPROTKB|Q15836	100	VAMP3 "Vesicle-associated memb	0.370	0.6	0.666	5.4e-15
UNIPROTKB|G3X752	103	VAMP3 "Vesicle-associated memb	0.364	0.572	0.661	8.8e-15

FB|FBgn0013342 n-syb "n-synaptobrevin" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 53/97 (54%), Positives = 64/97 (65%)

Query:    20 PRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAG 79
             P  PQQIAAQKRLQQTQAQVDEVVDIM+TNVEKVLERD KLSELDDRA  L +      G
Sbjct:    39 PHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQ------G 92

Query:    80 NSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
              S   QQ    K K      ++  ++G++ + V  ++
Sbjct:    93 ASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGII 129

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005484 "SNAP receptor activity" evidence=ISS;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=ISS;IDA;NAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS;NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0043195 "terminal bouton" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IDA

UNIPROTKB|Q26335 n-syb "N-syb protein" [Drosophila sp. (taxid:7242)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 53/97 (54%), Positives = 64/97 (65%)

Query:    20 PRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAG 79
             P  PQQIAAQKRLQQTQAQVDEVVDIM+TNVEKVLERD KLSELDDRA  L +      G
Sbjct:    30 PHNPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDTKLSELDDRADALQQ------G 83

Query:    80 NSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVL 116
              S   QQ    K K      ++  ++G++ + V  ++
Sbjct:    84 ASQFEQQAGKLKRKFWLQNLKMMIIMGVIGLVVVGII 120

GO:0005484 "SNAP receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=ISS;IDA;NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS;NAS

GO:0043195 "terminal bouton" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IDA

WB|WBGene00004897 snb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 47/70 (67%), Positives = 55/70 (78%)

Query:    73 MDG-GFAGNSSGRQQKSDPKSK-LSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRAN 130
             MD  G AG   G Q    P +K L ++Q QVDEVVGIM+VNVEKVLERDQKLS+LD+RA+
Sbjct:     1 MDAQGDAGAQGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRAD 60

Query:   131 ALQQGASQFE 140
             ALQ+GASQFE
Sbjct:    61 ALQEGASQFE 70

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=IDA

GO:0043051 "regulation of pharyngeal pumping" evidence=IDA

GO:0030421 "defecation" evidence=IMP

GO:0043134 "regulation of hindgut contraction" evidence=IMP

GO:0016079 "synaptic vesicle exocytosis" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0060473 "cortical granule" evidence=IDA

UNIPROTKB|J9P1V7 VAMP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 42/63 (66%), Positives = 49/63 (77%)

Query:    78 AGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGAS 137
             AG + G    S    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GAS
Sbjct:     3 AGATPGSSAASGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 62

Query:   138 QFE 140
             QFE
Sbjct:    63 QFE 65

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1321389 Vamp3 "vesicle-associated membrane protein 3" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/62 (66%), Positives = 48/62 (77%)

Query:    79 GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
             G  SG    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct:     4 GVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 63

Query:   139 FE 140
             FE
Sbjct:    64 FE 65

GO:0000149 "SNARE binding" evidence=ISO

GO:0001921 "positive regulation of receptor recycling" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0017075 "syntaxin-1 binding" evidence=ISO

GO:0017156 "calcium ion-dependent exocytosis" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030141 "secretory granule" evidence=IDA

GO:0030665 "clathrin-coated vesicle membrane" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0043005 "neuron projection" evidence=IEA

GO:0043229 "intracellular organelle" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0055037 "recycling endosome" evidence=ISO

RGD|61880 Vamp3 "vesicle-associated membrane protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/62 (66%), Positives = 48/62 (77%)

Query:    79 GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
             G  SG    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct:     4 GVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 63

Query:   139 FE 140
             FE
Sbjct:    64 FE 65

GO:0000149 "SNARE binding" evidence=IPI

GO:0001921 "positive regulation of receptor recycling" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS;IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO;ISS

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0017075 "syntaxin-1 binding" evidence=IPI

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030141 "secretory granule" evidence=IEA;ISO

GO:0030665 "clathrin-coated vesicle membrane" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IEA

GO:0043229 "intracellular organelle" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0055037 "recycling endosome" evidence=ISO;IDA

UNIPROTKB|I3LVF9 VAMP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/62 (64%), Positives = 48/62 (77%)

Query:    79 GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
             G  +G    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct:    55 GAPAGSSAAAGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 114

Query:   139 FE 140
             FE
Sbjct:   115 FE 116

GO:0055037 "recycling endosome" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NTL8 VAMP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 43/70 (61%), Positives = 50/70 (71%)

Query:    71 GKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRAN 130
             G    G AG        S+   +L ++Q QVDEVV IMR+NV+KVLERDQKLSELDNRA+
Sbjct:     8 GPTSTGAAGPPPATNVSSN--KRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRAD 65

Query:   131 ALQQGASQFE 140
             ALQ GASQFE
Sbjct:    66 ALQAGASQFE 75

GO:0016021 "integral to membrane" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0042589 "zymogen granule membrane" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0090316 "positive regulation of intracellular protein transport" evidence=IEA

UNIPROTKB|Q15836 VAMP3 "Vesicle-associated membrane protein 3" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query:    81 SSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
             S+G    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct:     2 STGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 61

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001921 "positive regulation of receptor recycling" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0055037 "recycling endosome" evidence=IDA

GO:0006887 "exocytosis" evidence=TAS

GO:0006904 "vesicle docking involved in exocytosis" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

UNIPROTKB|G3X752 VAMP3 "Vesicle-associated membrane protein 3" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query:    82 SGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
             +G    +    +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct:     6 AGSSAAAGSSRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 64

GO:0055037 "recycling endosome" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KJD2	VAMP3_BOVIN	No assigned EC number	0.7916	0.2962	0.4615	yes	N/A
Q9N0Y0	VAMP2_MACMU	No assigned EC number	0.7916	0.2962	0.4137	yes	N/A
Q15836	VAMP3_HUMAN	No assigned EC number	0.6666	0.3703	0.6	yes	N/A
O02495	SYB1_CAEEL	No assigned EC number	0.7916	0.2962	0.4403	yes	N/A
P63025	VAMP3_RAT	No assigned EC number	0.6612	0.3827	0.6019	yes	N/A
P63024	VAMP3_MOUSE	No assigned EC number	0.6612	0.3827	0.6019	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam00957	89	pfam00957, Synaptobrevin, Synaptobrevin	2e-16
pfam00957	89	pfam00957, Synaptobrevin, Synaptobrevin	5e-15
COG5143	190	COG5143, SNC1, Synaptobrevin/VAMP-like protein [In	6e-04

>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin

 Score = 69.9 bits (172), Expect = 2e-16
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 92  SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
            KL++ Q QVDEV  IM  N++KVLER +KL  L ++   LQ  A QF 
Sbjct: 3   DKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENLQSSAQQFR 51

Length = 89

>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin

 Score = 66.0 bits (162), Expect = 5e-15
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
          +  +L + QAQVDEV DIM  N++KVLER +KL  L D+  NL
Sbjct: 1  SNDKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENL 43

Length = 89

>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 24  QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
           +  + Q +L Q Q +++E   ++  N+EKVL RD+KL  L D +  L
Sbjct: 123 RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSIL 169

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0860|consensus	116		99.9
KOG0859|consensus	217		99.73
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.72
KOG0860|consensus	116		99.64
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.57
KOG0859|consensus	217		99.54
KOG0861|consensus	198		99.29
KOG0861|consensus	198		99.27
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.22
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	98.81
KOG0862|consensus	216		98.31
KOG0862|consensus	216		97.91
KOG1983|consensus	993		80.8

>KOG0860|consensus

Probab=99.90  E-value=1.2e-24  Score=162.15  Aligned_cols=81  Identities=48%  Similarity=0.609  Sum_probs=77.3

Q ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723          23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD  102 (162)
Q Consensus        23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~  102 (162)
                      |++...+++++++++|||||++||++||+|+||||+||++|++||+.|++      +|.+|+++|.+++++|||++.++.
T Consensus        22 ~~~~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~------~as~F~~~A~klkrk~wWkn~Km~   95 (116)
T KOG0860|consen   22 PPNNTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQA------GASQFEKTAVKLKRKMWWKNCKMR   95 (116)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999999999999999999999999999999999999      999999999999999999999999


Q ss_pred             HHHHHHH
Q psy5723         103 EVVGIMR  109 (162)
Q Consensus       103 iVi~IM~  109 (162)
                      .+++++.
T Consensus        96 ~il~~v~  102 (116)
T KOG0860|consen   96 IILGLVI  102 (116)
T ss_pred             HHHHHHH
Confidence            8877653

>KOG0859|consensus

Probab=99.73  E-value=5.5e-19  Score=142.42  Aligned_cols=75  Identities=29%  Similarity=0.330  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723          28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI  107 (162)
Q Consensus        28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I  107 (162)
                      +.+++++++.||+||++||.+|||++|+||||||.|+|||++|+.      ++..|++++++++++|||.+.++..+...
T Consensus       123 ~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~------~s~~fr~q~r~~~r~mw~~n~kl~~iv~~  196 (217)
T KOG0859|consen  123 EISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRS------KSFDFRTQGRKLRRKMWFQNMKLKLIVLG  196 (217)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhh------hhHHHHHHHHHHHHHHHHhccceehhhhh
Confidence            389999999999999999999999999999999999999999999      99999999999999999999999887654


Q ss_pred             H
Q psy5723         108 M  108 (162)
Q Consensus       108 M  108 (162)
                      .
T Consensus       197 ~  197 (217)
T KOG0859|consen  197 V  197 (217)
T ss_pred             H
Confidence            4

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.72  E-value=1.2e-18  Score=123.74  Aligned_cols=74  Identities=31%  Similarity=0.473  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHH
Q psy5723          29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIM  108 (162)
Q Consensus        29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM  108 (162)
                      ++++.+++.+|++|+++|.+||+++++|||+|++|+++|++|..      .|..|+++|+++++++||.+.++..+..+.
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~------~a~~F~k~a~~l~r~~~~~~~k~~~i~~~i   75 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSD------NAKQFKKNAKKLKRKMWWRNYKLYIIIIII   75 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            58999999999999999999999999999999999999999999      999999999999999999999999987754

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860|consensus

Probab=99.64  E-value=2.8e-16  Score=117.32  Aligned_cols=70  Identities=51%  Similarity=0.638  Sum_probs=64.6

Q ss_pred             CCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723          88 SDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL  157 (162)
Q Consensus        88 ~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~  157 (162)
                      ....+++...+.++++|++||.+||+|||||||||++|++||+.|+.+|..|+++|.+++..|+-+-.|.
T Consensus        25 ~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km   94 (116)
T KOG0860|consen   25 NTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKM   94 (116)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3447899999999999999999999999999999999999999999999999999999999998765554

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.57  E-value=5.3e-15  Score=104.98  Aligned_cols=69  Identities=36%  Similarity=0.478  Sum_probs=64.5

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhc
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSA  159 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~  159 (162)
                      .+++...+.++++++.+|.+||+++++|||+|++|+++|+.|...|..|+++|+++++.|+.+..++..
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~   70 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYI   70 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999977766654

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0859|consensus

Probab=99.54  E-value=2.2e-15  Score=121.62  Aligned_cols=70  Identities=31%  Similarity=0.353  Sum_probs=65.9

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcc
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAV  160 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~  160 (162)
                      -+++.+.+.++.+|++||++|||+||+||||||.|||||++|+.+|..|+++++++...|.-+-.+|.-+
T Consensus       124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~i  193 (217)
T KOG0859|consen  124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLI  193 (217)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehh
Confidence            6889999999999999999999999999999999999999999999999999999999998887776543

>KOG0861|consensus

Probab=99.29  E-value=1.3e-12  Score=104.06  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=59.0

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCch
Q psy5723          24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPK   91 (162)
Q Consensus        24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk   91 (162)
                      ++|+..|+|.++|++|||++.||++.|+.||+||||||+|++||++|..      +|+.|.++|++.+
T Consensus       131 qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~------qSKmfYKsAKK~N  192 (198)
T KOG0861|consen  131 QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSL------QSKMFYKSAKKTN  192 (198)
T ss_pred             cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhH------HHHHHHHHHhhcC
Confidence            5899999999999999999999999999999999999999999999999      8999999987765

>KOG0861|consensus

Probab=99.27  E-value=6.4e-12  Score=100.11  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=55.4

Q ss_pred             chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy5723          90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHG  147 (162)
Q Consensus        90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~  147 (162)
                      -.+.|..++.++++++.|+++.|+.||+|||+||+||+||+.|..+|+.|+++||+-|
T Consensus       135 ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~N  192 (198)
T KOG0861|consen  135 EADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTN  192 (198)
T ss_pred             hhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence            3688999999999999999999999999999999999999999999999999999865

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.22  E-value=1.7e-11  Score=98.69  Aligned_cols=93  Identities=27%  Similarity=0.412  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHH
Q psy5723          31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRV  110 (162)
Q Consensus        31 kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~  110 (162)
                      +...++...|+++.+|..|+++++++|.+..                           ..++++...+..+.+++.+|.+
T Consensus        95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~---------------------------s~~D~~d~l~~el~e~K~~l~k  147 (190)
T COG5143          95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDP---------------------------SIQDKLDQLQQELEETKRVLNK  147 (190)
T ss_pred             hhhhHhhcccCccchhhhhHHHHHHhhcCCc---------------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999963332                           2346677778889999999999


Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q psy5723         111 NVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSM  150 (162)
Q Consensus       111 NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m  150 (162)
                      ||+++|+|||+|+.|+++|+.|...|+.|++.|++.++-|
T Consensus       148 ~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~  187 (190)
T COG5143         148 NIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCC  187 (190)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999977654

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=98.81  E-value=1.6e-09  Score=87.41  Aligned_cols=68  Identities=25%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhh
Q psy5723          23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSE   96 (162)
Q Consensus        23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~   96 (162)
                      -+.+...|++.+++.+++||+.+|.+||+++|+|||+|+.|.+++..|..      .+..|.+.|++.+..+||
T Consensus       122 y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~------~s~~~~k~akk~n~~~~~  189 (190)
T COG5143         122 YRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLL------SSKMFPKSAKKSNLCCLI  189 (190)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhee
Confidence            34577889999999999999999999999999999999999999999999      999999999999888877

>KOG0862|consensus

Probab=98.31  E-value=7.6e-07  Score=73.10  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=64.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhh
Q psy5723          25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQV  101 (162)
Q Consensus        25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL  101 (162)
                      .+++.+.+.++.+++.+|+.||.+||+.++.||+.|+.|...+.+|..      .|..+.+.|..++.+..+.+.-.
T Consensus       129 d~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~------~s~~y~~~a~~in~~sl~~~~aa  199 (216)
T KOG0862|consen  129 DTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSS------ESRKYPKTAKGINRKSLIRKYAA  199 (216)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccH------HHHhhHHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999999999999999      88889999999998876665543

>KOG0862|consensus

Probab=97.91  E-value=1.3e-05  Score=65.83  Aligned_cols=68  Identities=22%  Similarity=0.331  Sum_probs=59.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcc
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAV  160 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~  160 (162)
                      ++.+...+..+..++.||++||++||.|||.|+.|...+..|...|..+++.|+.  ++|..-+.+.+|.
T Consensus       133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~--in~~sl~~~~aa~  200 (216)
T KOG0862|consen  133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKG--INRKSLIRKYAAY  200 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHH--HHHHHHHHHHHHH
Confidence            4668888999999999999999999999999999999999999999999999988  4455555555443

>KOG1983|consensus

Probab=80.80  E-value=1  Score=44.73  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=36.0

Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh-hcchhhhhh
Q psy5723         111 NVEKVLERDQKLSELDNRANALQQGASQFEHVPTF-HGLSMSRQI  154 (162)
Q Consensus       111 NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~-~~~~m~~~~  154 (162)
                      --..+.+|||||+.++++|.+|.+.+.+|-..|.+ +++.+.|.|
T Consensus       946 a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~  990 (993)
T KOG1983|consen  946 ALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKW  990 (993)
T ss_pred             cchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhh
Confidence            34678899999999999999999999999988864 455555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1sfc_A	96	Neuronal Synaptic Fusion Complex Length = 96		1e-15
2kog_A	119	Lipid-Bound Synaptobrevin Solution Nmr Structure Le		1e-15
3hd7_A	91	Helical Extension Of The Neuronal Snare Complex Int		1e-15
1kil_A	66	Three-Dimensional Structure Of The ComplexinSNARE C		2e-15
1n7s_A	63	High Resolution Structure Of A Truncated Neuronal S		2e-15
1l4a_A	80	X-Ray Structure Of The Neuronal ComplexinSNARE COMP		6e-14
3rk2_A	37	Truncated Snare Complex Length = 37		4e-09
3rk2_A	37	Truncated Snare Complex Length = 37		4e-06
3fie_C	38	Crystal Structure Of Clostridium Botulinum Neurotox		2e-08
3fie_C	38	Crystal Structure Of Clostridium Botulinum Neurotox		8e-05
3fii_B	33	Crystal Structure Of Clostridium Botulinum Neurotox		2e-07
3fii_B	33	Crystal Structure Of Clostridium Botulinum Neurotox		9e-05
2nps_A	74	Crystal Structure Of The Early Endosomal Snare Comp		2e-05
2nps_A	74	Crystal Structure Of The Early Endosomal Snare Comp		9e-05
3b5n_A	61	Structure Of The Yeast Plasma Membrane Snare Comple		1e-04
3b5n_A	61	Structure Of The Yeast Plasma Membrane Snare Comple		1e-04

>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex Length = 96

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 78

>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure Length = 119

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 34  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 81

>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 91

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 6   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 53

>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 66

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 52

>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 63

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 52

>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 80

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           +L ++Q QV+EVV IMRVNV+KVLERD K+SELD+RA+ALQ GASQFE
Sbjct: 16  RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFE 63

>pdb|3RK2|A Chain A, Truncated Snare Complex Length = 37

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 26 IAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKL 60
          + + +RLQQTQAQVDEVVDIM+ NV+KVLERDQKL
Sbjct: 3  LGSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37

>pdb|3RK2|A Chain A, Truncated Snare Complex Length = 37

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKL 122
           +L ++Q QVDEVV IMRVNV+KVLERDQKL
Sbjct: 8   RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37

>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin Serotype F Catalytic Domain With An Inhibitor (Inh1) Length = 38

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD 57
          P  + + +RLQQTQAQVDEVVDIM+ NV+KVLERD
Sbjct: 2  PPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERD 36

>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin Serotype F Catalytic Domain With An Inhibitor (Inh1) Length = 38

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERD 119
           +L ++Q QVDEVV IMRVNV+KVLERD
Sbjct: 10  RLQQTQAQVDEVVDIMRVNVDKVLERD 36

>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Serotype F Catalytic Domain With An Inhibitor (Inh2) Length = 33

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERD 57
           + +RLQQTQAQVDEVVDIM+ NV+KVLERD
Sbjct: 1  TSNRRLQQTQAQVDEVVDIMRVNVDKVLERD 31

>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Serotype F Catalytic Domain With An Inhibitor (Inh2) Length = 33

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERD 119
           +L ++Q QVDEVV IMRVNV+KVLERD
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERD 31

>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNS 81
          +++  Q QVDEV+D+M+ N+ KV+ER ++L EL D++ +L      F+  S
Sbjct: 9  KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS 59

>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex Length = 74

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQF 139
           K+   Q QVDEV+ +M+ N+ KV+ER ++L EL +++ +L   A+ F
Sbjct: 9   KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 55

>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex Length = 61

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGF 77
          R  + QA++D+ V IM+ N+ KV ER ++L+ ++D+A NL     GF
Sbjct: 3  RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGF 49

>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex Length = 61

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 92  SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEH 141
           S+ +E Q ++D+ VGIMR N+ KV ER ++L+ ++++A+ L   A  F+ 
Sbjct: 2   SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKR 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	6e-13
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	1e-11
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	7e-13
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	3e-11
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	9e-13
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	2e-10
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	1e-12
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	2e-12
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	2e-12
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	9e-11
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	9e-12
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	6e-11
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	6e-11
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	4e-09
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	8e-11
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	3e-10
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	2e-10
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	3e-06
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	1e-08
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	1e-06
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	5e-07
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	1e-04

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Length = 63

 Score = 59.4 bits (144), Expect = 6e-13
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 92  SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
            +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 4   RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 52

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Length = 63

 Score = 56.3 bits (136), Expect = 1e-11
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNS 81
           + +RLQQTQAQVDEVVDIM+ NV+KVLERDQKLSELDDRA  L      F  ++
Sbjct: 1  GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Length = 119

 Score = 60.5 bits (146), Expect = 7e-13
 Identities = 41/71 (57%), Positives = 48/71 (67%)

Query: 11 AGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
          A   G  G P  P  + + +RLQQTQAQVDEVVDIM+ NV+KVLERDQKLSELDDRA  L
Sbjct: 14 AAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 73

Query: 71 GKMDGGFAGNS 81
                F  ++
Sbjct: 74 QAGASQFETSA 84

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Length = 119

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 39/62 (62%), Positives = 45/62 (72%)

Query: 79  GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
           G             +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct: 20  GGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 79

Query: 139 FE 140
           FE
Sbjct: 80  FE 81

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 61

 Score = 59.0 bits (143), Expect = 9e-13
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 92  SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           S+ +E Q ++D+ VGIMR N+ KV ER ++L+ ++++A+ L   A  F+
Sbjct: 2   SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFK 50

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 61

 Score = 52.8 bits (127), Expect = 2e-10
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGF 77
          R  + QA++D+ V IM+ N+ KV ER ++L+ ++D+A NL     GF
Sbjct: 3  RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGF 49

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Length = 91

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 90  PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
              +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQFE
Sbjct: 3   HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 53

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Length = 91

 Score = 58.8 bits (142), Expect = 2e-12
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNS 81
          +  +RLQQTQAQVDEVVDIM+ NV+KVLERDQKLSELDDRA  L      F  ++
Sbjct: 2  SHMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 56

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 80

 Score = 58.8 bits (142), Expect = 2e-12
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 79  GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
           G   G  Q      +L ++Q QV+EVV IMRVNV+KVLERD K+SELD+RA+ALQ GASQ
Sbjct: 2   GPPQGPPQPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQ 61

Query: 139 FE 140
           FE
Sbjct: 62  FE 63

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 80

 Score = 54.2 bits (130), Expect = 9e-11
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGF 77
          PQ +   KRLQQTQAQV+EVVDIM+ NV+KVLERD K+SELDDRA  L      F
Sbjct: 8  PQPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQF 62

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 96

 Score = 57.4 bits (138), Expect = 9e-12
 Identities = 41/71 (57%), Positives = 48/71 (67%)

Query: 11 AGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
          A   G  G P  P  + + +RLQQTQAQVDEVVDIM+ NV+KVLERDQKLSELDDRA  L
Sbjct: 11 AAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70

Query: 71 GKMDGGFAGNS 81
                F  ++
Sbjct: 71 QAGASQFETSA 81

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 96

 Score = 55.1 bits (132), Expect = 6e-11
 Identities = 39/62 (62%), Positives = 45/62 (72%)

Query: 79  GNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQ 138
           G             +L ++Q QVDEVV IMRVNV+KVLERDQKLSELD+RA+ALQ GASQ
Sbjct: 17  GGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ 76

Query: 139 FE 140
           FE
Sbjct: 77  FE 78

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Length = 74

 Score = 54.5 bits (131), Expect = 6e-11
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 93  KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           K+   Q QVDEV+ +M+ N+ KV+ER ++L EL +++ +L   A+ F 
Sbjct: 9   KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFS 56

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Length = 74

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
              +++  Q QVDEV+D+M+ N+ KV+ER ++L EL D++ +L
Sbjct: 5  PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 54.0 bits (130), Expect = 8e-11
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 88  SDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
           S    ++   Q +V+ V  IM  NVE++L R + L  L N+   L+  +  F+
Sbjct: 5   SAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFK 57

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
              A   R++  Q++V+ V +IM  NVE++L R + L  L ++  +L
Sbjct: 2  SHMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL 49

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum} Length = 38

 Score = 52.5 bits (125), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query: 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD 57
          P  + + +RLQQTQAQVDEVVDIM+ NV+KVLERD
Sbjct: 2  PPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERD 36

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum} Length = 38

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 86  QKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERD 119
                  +L ++Q QVDEVV IMRVNV+KVLERD
Sbjct: 3   PNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERD 36

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 51  EKVLER-DQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMR 109
           EKVL+   +++  +D   G+   +          R Q       +S+ Q ++DE   I+ 
Sbjct: 96  EKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILH 155

Query: 110 VNVEKVLERDQKLSELDNRANALQQGASQFE 140
             +E +LER +KL +L +++  L   +  F 
Sbjct: 156 NTMESLLERGEKLDDLVSKSEVLGTQSKAFY 186

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 28  AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQK 87
               + + QA++DE   I+   +E +LER +KL +L  ++  LG     F   +  R+Q 
Sbjct: 136 EADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTA--RKQN 193

Query: 88  S 88
           S
Sbjct: 194 S 194

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 84  RQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
               S  +  L     ++ +V  IM  N+E+VL+R + LS LD++AN L   + ++ 
Sbjct: 126 LYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYR 182

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24  QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNS 81
               A++ L     ++ +V  IM  N+E+VL+R + LS LD +A NL  +   +  ++
Sbjct: 128 IDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDA 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.86
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.86
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.85
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	99.84
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.8
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	99.75
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	99.75
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	99.73
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	99.72
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	99.72
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.7
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	99.7
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.69
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	99.68
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.66
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	99.64
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	99.63
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	99.59
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	99.58
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.53
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	99.39
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.31
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	99.26
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.24
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	98.48
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	98.23
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	97.79
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	97.71

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.86  E-value=1.1e-23  Score=157.40  Aligned_cols=83  Identities=51%  Similarity=0.677  Sum_probs=76.8

Q ss_pred             CCCCcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhh
Q psy5723          20 PRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQK   99 (162)
Q Consensus        20 ~~~~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~   99 (162)
                      |+++++....+++.+++.+|+||++||++||+++|+|||+|++|++||++|+.      .|..|+++|+++++++||.+.
T Consensus        23 ~~~~~~~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~------~S~~F~k~A~kl~rkmwwkn~   96 (119)
T 2kog_A           23 PAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNL   96 (119)
T ss_dssp             CCCCCSSSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS------SSHHHHHHHHHHHHHHSCHHH
T ss_pred             CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            44456667789999999999999999999999999999999999999999999      999999999999999999999


Q ss_pred             hhhHHHHHH
Q psy5723         100 QVDEVVGIM  108 (162)
Q Consensus       100 KL~iVi~IM  108 (162)
                      ++..+++++
T Consensus        97 K~~iii~~i  105 (119)
T 2kog_A           97 KMMIILGVI  105 (119)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999886654

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.86  E-value=5.4e-23  Score=143.76  Aligned_cols=72  Identities=53%  Similarity=0.637  Sum_probs=63.9

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhh
Q psy5723          24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQV  101 (162)
Q Consensus        24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL  101 (162)
                      .++...++|.+++.+|+||++||.+||++||+|||+|+.|+++|++|..      .|..|+++|+++++++||.++|+
T Consensus         9 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~------~s~~F~k~A~~l~rk~wwkn~K~   80 (80)
T 1l4a_A            9 QPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQA------GASQFEASAGKLKRKFWWKNCKM   80 (80)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------TSTTTTHHHHHHHHHCC------
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677789999999999999999999999999999999999999999999      99999999999999999999874

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.85  E-value=6.6e-23  Score=147.96  Aligned_cols=74  Identities=54%  Similarity=0.663  Sum_probs=66.7

Q ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723          23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD  102 (162)
Q Consensus        23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~  102 (162)
                      +.+....++|.+++.+|+||++||++||++||+|||+|+.|+++|++|..      .|..|+++|+++++++||.+.|++
T Consensus        23 ~~~~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~------~S~~F~k~A~kl~rkmwwkn~K~~   96 (96)
T 1sfc_A           23 PPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMM   96 (96)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhcC
Confidence            34456779999999999999999999999999999999999999999999      999999999999999999999864

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=99.84  E-value=3e-22  Score=143.13  Aligned_cols=76  Identities=53%  Similarity=0.633  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723          28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI  107 (162)
Q Consensus        28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I  107 (162)
                      +++++++++.+|+||++||++||+++|+|||+||.|+++|++|+.      .|..|+++|++++++|||.+.|+..+.++
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~------~s~~F~~~A~~l~rkmwwkn~K~~iii~~   76 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMMIILGV   76 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999      99999999999999999999999988776


Q ss_pred             HH
Q psy5723         108 MR  109 (162)
Q Consensus       108 M~  109 (162)
                      ++
T Consensus        77 iv   78 (91)
T 3hd7_A           77 IC   78 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.80  E-value=6.6e-22  Score=136.31  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=61.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723          25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD  102 (162)
Q Consensus        25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~  102 (162)
                      +|+..++|.+++.+|+||++||.+||++||+|||+|+.|+++|++|+.      .|..|+++|+++++++||.+.|+.
T Consensus         3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~~ww~n~K~~   74 (74)
T 2nps_A            3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSD------NATAFSNRSKQLRRQMWWRGCKIK   74 (74)
T ss_dssp             ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCC------
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccC
Confidence            345678999999999999999999999999999999999999999999      999999999999999999999863

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.75  E-value=1.2e-19  Score=120.62  Aligned_cols=60  Identities=28%  Similarity=0.491  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhh
Q psy5723          30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLS   95 (162)
Q Consensus        30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~   95 (162)
                      +++.+++.+|+||++||++||+++|+|||+|+.|+++|++|+.      .|..|+++|++++++||
T Consensus         2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~mW   61 (61)
T 3b5n_A            2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAV------SAQGFKRGANRVRKAMW   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhC
Confidence            7899999999999999999999999999999999999999999      99999999999999998

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=99.75  E-value=1.1e-19  Score=121.55  Aligned_cols=62  Identities=63%  Similarity=0.759  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhh
Q psy5723          28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLS   95 (162)
Q Consensus        28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~   95 (162)
                      ..++|.+++.+|+||++||++||+++|+|||+|+.|+++|+.|+.      .|..|+++|++++++||
T Consensus         2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~mW   63 (63)
T 1n7s_A            2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYW   63 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhC
Confidence            368999999999999999999999999999999999999999999      99999999999999998

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.73  E-value=5.4e-18  Score=112.65  Aligned_cols=60  Identities=33%  Similarity=0.510  Sum_probs=57.5

Q ss_pred             hhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhh
Q psy5723          92 SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMS  151 (162)
Q Consensus        92 ~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~  151 (162)
                      +++..++.++++|+.||++||++||+|||+|+.|++||++|+..|..|+++|++|++.|.
T Consensus         2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   61 (61)
T 3b5n_A            2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            578889999999999999999999999999999999999999999999999999999884

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=99.72  E-value=8.8e-18  Score=112.17  Aligned_cols=61  Identities=62%  Similarity=0.772  Sum_probs=58.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhh
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMS  151 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~  151 (162)
                      .+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|.
T Consensus         3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   63 (63)
T 1n7s_A            3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4788999999999999999999999999999999999999999999999999999998874

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.72  E-value=5.6e-19  Score=118.87  Aligned_cols=64  Identities=23%  Similarity=0.393  Sum_probs=52.2

Q ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchh
Q psy5723          23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKS   92 (162)
Q Consensus        23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~   92 (162)
                      |-+++..++|.+++.+|+||+.||.+||++||+|||+|+.|+++|++|+.      .|..|+++|+++++
T Consensus         2 ~~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~------~s~~F~k~A~~l~r   65 (65)
T 1gl2_A            2 SHMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEA------TSEHFKTTSQKVAR   65 (65)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHC---
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHhcC
Confidence            34556679999999999999999999999999999999999999999999      99999999988864

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.70  E-value=1.7e-17  Score=114.19  Aligned_cols=67  Identities=30%  Similarity=0.473  Sum_probs=60.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL  157 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~  157 (162)
                      .+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|.-+-.|+
T Consensus         7 ~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~   73 (74)
T 2nps_A            7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKI   73 (74)
T ss_dssp             CSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4789999999999999999999999999999999999999999999999999999999998765554

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=99.70  E-value=2.5e-17  Score=117.53  Aligned_cols=68  Identities=56%  Similarity=0.663  Sum_probs=63.7

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhh
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLS  158 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~  158 (162)
                      .+++...+.++++|+.||++||+++|+|||+||+|++||++|+.+|..|+++|+++++.|.-+-.|+.
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~   71 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM   71 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999987755543

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.69  E-value=3.9e-17  Score=117.65  Aligned_cols=69  Identities=55%  Similarity=0.672  Sum_probs=63.6

Q ss_pred             CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723          89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL  157 (162)
Q Consensus        89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~  157 (162)
                      .-.+++..++.++++|+.||++||++||+|||+|++|++||++|...|..|+++|+++++.|+-+-.|+
T Consensus        27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~   95 (96)
T 1sfc_A           27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM   95 (96)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            346899999999999999999999999999999999999999999999999999999999998776654

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.68  E-value=5.1e-17  Score=109.26  Aligned_cols=58  Identities=26%  Similarity=0.434  Sum_probs=52.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGL  148 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~  148 (162)
                      .+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|++|++
T Consensus         8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r   65 (65)
T 1gl2_A            8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR   65 (65)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999864

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.66  E-value=1.8e-17  Score=115.61  Aligned_cols=67  Identities=52%  Similarity=0.649  Sum_probs=59.8

Q ss_pred             chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhh
Q psy5723          90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINH  156 (162)
Q Consensus        90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~  156 (162)
                      -.+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|+-+-.|
T Consensus        13 ~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K   79 (80)
T 1l4a_A           13 QSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCK   79 (80)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC-----
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3588999999999999999999999999999999999999999999999999999999998766544

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=99.64  E-value=4.5e-18  Score=135.26  Aligned_cols=69  Identities=28%  Similarity=0.370  Sum_probs=12.1

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhh
Q psy5723          24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQ   98 (162)
Q Consensus        24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n   98 (162)
                      ++++..++|.+++.+|+||++||++||+++|+|||+|+.|+++|++|+.      .|..|+++|++++++|||.+
T Consensus       128 ~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~------~s~~f~~~a~~l~~~~~~~k  196 (196)
T 2nut_C          128 IDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSS------LSKKYRQDAKYLNMRSTYAK  196 (196)
T ss_dssp             SCCC-----------------CCEEEHHHHC--------------------------------------------
T ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcC
Confidence            3456789999999999999999999999999999999999999999999      99999999999999999974

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=99.63  E-value=3.9e-19  Score=141.22  Aligned_cols=70  Identities=24%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhh
Q psy5723          25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQ  100 (162)
Q Consensus        25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~K  100 (162)
                      .++..+++.+++.+|+||++||++||++||+|||+||.|+++|++|..      .|..|+++|++++++|||.+.|
T Consensus       120 d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~------~s~~f~~~a~~l~r~mwwkn~K  189 (189)
T 4b93_A          120 ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVD------SSVTFKTTSRNLARAMCMKNIK  189 (189)
T ss_dssp             CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC-------------------------------
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcC
Confidence            356679999999999999999999999999999999999999999999      9999999999999999999875

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.59  E-value=1.7e-15  Score=101.50  Aligned_cols=58  Identities=26%  Similarity=0.277  Sum_probs=54.1

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q psy5723          93 KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSM  150 (162)
Q Consensus        93 Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m  150 (162)
                      ++..++.++.+|.+||.+||++|++|||+|+.|++||++|..+|..|++.|++|.+.|
T Consensus         5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky   62 (63)
T 1urq_A            5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY   62 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5778899999999999999999999999999999999999999999999999887665

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.58  E-value=1.1e-16  Score=107.35  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhh
Q psy5723          30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKL   94 (162)
Q Consensus        30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km   94 (162)
                      .+++.++.+|++|++||.+||+++++|||+|+.|++||++|..      +|..|.+.|.+|++|+
T Consensus         4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~------~A~~F~~~A~~l~~Ky   62 (63)
T 1urq_A            4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMS------SADSFSKHAHEMMLKY   62 (63)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999      9999999999888765

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.53  E-value=1.1e-16  Score=119.37  Aligned_cols=71  Identities=54%  Similarity=0.643  Sum_probs=65.1

Q ss_pred             CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhc
Q psy5723          89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSA  159 (162)
Q Consensus        89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~  159 (162)
                      .-.+++..++.++++|+.||++||+++|+|||+||+|++||++|+.+|..|+++|+++++.|.-+-.++.+
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~i  100 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMI  100 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999776655443

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=99.39  E-value=8.5e-15  Score=116.26  Aligned_cols=64  Identities=25%  Similarity=0.439  Sum_probs=10.0

Q ss_pred             chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhh
Q psy5723          90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQ  153 (162)
Q Consensus        90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~  153 (162)
                      -.+++..++.++++|+.||++||++||+|||+||.|++||++|+.+|..|+++|+++++.|.-+
T Consensus       132 ~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~  195 (196)
T 2nut_C          132 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA  195 (196)
T ss_dssp             -----------------CCEEEHHHHC-------------------------------------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3688999999999999999999999999999999999999999999999999999999998643

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.31  E-value=2.7e-15  Score=120.34  Aligned_cols=63  Identities=25%  Similarity=0.355  Sum_probs=58.6

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchh
Q psy5723          24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKS   92 (162)
Q Consensus        24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~   92 (162)
                      ++++..+++.+++.+|+||++||++||+++|+|||+||+|++||++|+.      .|..|+++|+++++
T Consensus       132 ~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~------~s~~F~k~a~~lns  194 (199)
T 3kyq_A          132 QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT------QSKAFYKTARKQNS  194 (199)
T ss_dssp             TSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCH------HHHHHHHHHHHHC-
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence            3567779999999999999999999999999999999999999999999      99999999988874

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=99.26  E-value=4.3e-15  Score=117.85  Aligned_cols=63  Identities=29%  Similarity=0.391  Sum_probs=35.7

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhh
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQ  153 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~  153 (162)
                      .+++..++.++++|+.||++||++||+|||+||.|++||++|+.+|..|+++|++|++.|+-+
T Consensus       124 ~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwk  186 (189)
T 4b93_A          124 LDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMK  186 (189)
T ss_dssp             -----CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC----------------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999754

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.24  E-value=4.7e-14  Score=113.11  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=55.2

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGL  148 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~  148 (162)
                      .+++..++.++++|+.||++||++||+|||+||+|++||++|+.+|..|+++|+++|.
T Consensus       137 ~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns  194 (199)
T 3kyq_A          137 ADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS  194 (199)
T ss_dssp             CCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999999999999999999999999873

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=98.48  E-value=4.7e-11  Score=72.31  Aligned_cols=35  Identities=69%  Similarity=0.934  Sum_probs=30.7

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy5723          24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQ   58 (162)
Q Consensus        24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRge   58 (162)
                      ++....+++.+++.+|+||++||.+||+++|+||+
T Consensus         3 ~~~~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~   37 (38)
T 3fie_C            3 PNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC   37 (38)
T ss_dssp             -CCCCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence            34455689999999999999999999999999996

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=98.23  E-value=4.1e-07  Score=77.03  Aligned_cols=32  Identities=38%  Similarity=0.645  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy5723          29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKL   60 (162)
Q Consensus        29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL   60 (162)
                      .+++.+++.||+||++||++||+++|+|||+|
T Consensus       279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l  310 (310)
T 3zym_A          279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL  310 (310)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence            47999999999999999999999999999987

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=97.79  E-value=5.2e-05  Score=64.07  Aligned_cols=64  Identities=28%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             HHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhH
Q psy5723          53 VLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKL  122 (162)
Q Consensus        53 vleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekL  122 (162)
                      .....++|.....-...+.-      .+..|=+-.....+++..++.++++|++||++||++||+|||||
T Consensus       247 f~~Q~e~L~~Fy~~ck~l~l------~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l  310 (310)
T 3zym_A          247 FLTRMTRISEFLKVAEQVGI------DRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL  310 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTC------------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHcCC------CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence            34445555555555554442      22234333344467899999999999999999999999999986

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=97.71  E-value=3.3e-07  Score=55.22  Aligned_cols=30  Identities=67%  Similarity=0.908  Sum_probs=28.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHHHHHhhhh
Q psy5723          91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQ  120 (162)
Q Consensus        91 k~Km~~~n~KL~iVi~IM~~NI~kvL~Rge  120 (162)
                      .+++...+.++++|+.||++||++||+||+
T Consensus         8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~   37 (38)
T 3fie_C            8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC   37 (38)
T ss_dssp             CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence            477889999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00