Psyllid ID: psy5743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NRK6 | 738 | ATP-binding cassette sub- | yes | N/A | 0.899 | 0.784 | 0.553 | 0.0 | |
| Q9JI39 | 715 | ATP-binding cassette sub- | yes | N/A | 0.916 | 0.825 | 0.534 | 0.0 | |
| Q9Y7M7 | 726 | ATP-dependent permease MD | yes | N/A | 0.945 | 0.838 | 0.429 | 1e-139 | |
| Q54BU4 | 909 | ABC transporter B family | yes | N/A | 0.931 | 0.660 | 0.412 | 1e-136 | |
| P33311 | 773 | ATP-dependent permease MD | yes | N/A | 0.881 | 0.734 | 0.414 | 1e-123 | |
| P33310 | 695 | ATP-dependent permease MD | no | N/A | 0.982 | 0.910 | 0.389 | 1e-123 | |
| Q9FNU2 | 641 | ABC transporter B family | yes | N/A | 0.886 | 0.890 | 0.388 | 1e-120 | |
| P97998 | 685 | ATP-dependent permease MD | N/A | N/A | 0.895 | 0.842 | 0.392 | 1e-120 | |
| Q9CXJ4 | 717 | ATP-binding cassette sub- | no | N/A | 0.868 | 0.779 | 0.379 | 1e-116 | |
| Q56A55 | 714 | ATP-binding cassette sub- | no | N/A | 0.914 | 0.824 | 0.360 | 1e-115 |
| >sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/580 (55%), Positives = 432/580 (74%), Gaps = 1/580 (0%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL 123
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + + +T L
Sbjct: 155 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRL 214
Query: 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
L L VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR
Sbjct: 215 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINR 274
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+S+DT+L+ + VT+N+SDGLR+ S G+SMMF +S LA L +VPPV+ +A++YG+
Sbjct: 275 LSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGR 334
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303
++RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A
Sbjct: 335 YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 394
Query: 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSE
Sbjct: 395 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 454
Query: 364 LNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D S
Sbjct: 455 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFS 514
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VS
Sbjct: 515 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 574
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
QEP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++L
Sbjct: 575 QEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 634
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLST
Sbjct: 635 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 694
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
I+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 695 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 734
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May mediate critical mitochondrial transport functions related to heme biosynthesis. Homo sapiens (taxid: 9606) |
| >sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/591 (53%), Positives = 435/591 (73%), Gaps = 1/591 (0%)
Query: 53 NNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSD 112
++Q+ +SE+ KL L + E+ +L+ AV L VSS ITM+ PF LG++IDVIYT+
Sbjct: 109 DSQRRPAATGRSEVWKLLGLVRPERGRLSAAVGFLAVSSVITMSAPFFLGRIIDVIYTNP 168
Query: 113 KKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYF 172
+ + +T L +L VF+ GA N RVYLM S QSI +LR LF SI+ QE A+F
Sbjct: 169 SEGYGDSLTRLCAVLTCVFLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFF 228
Query: 173 DKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVP 232
DK +TGELINR+S+DT+L+ + VT+N+SDGLR+ S GV MMF +S LA L +VP
Sbjct: 229 DKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLATFVLSVVP 288
Query: 233 PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDD 292
P++ LA++YG+++RK+++ QD LA A Q+AEERI NIRT+++F +E E+ + ++D
Sbjct: 289 PISVLAVIYGRYLRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTGRVDQ 348
Query: 293 LFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGI 352
L +LA+KEALA+ FFG GLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++G+
Sbjct: 349 LLQLAQKEALARAGFFGAAGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGL 408
Query: 353 SIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPS 411
SIGGLS+FYSEL KGLGA RLWE++ER+P + + G + +G ++F N+ F+YP+
Sbjct: 409 SIGGLSSFYSELMKGLGAGGRLWELLERQPRLPFNEGMVLDEKTFQGALEFRNVHFTYPA 468
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
RP+ + D SL I SGS+T+++G SGSGKST+ LLLRLYDP +G + +DG DI++L+P
Sbjct: 469 RPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNP 528
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
++LRS+IG+VSQEP LFS ++ ENI YG ++ SSVT + AA+ ANA F+ F GF
Sbjct: 529 VWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGF 588
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
DT+VGE+GI+LSGGQKQRIAIARAL+K KILLLDEATSALDAENE+LVQ A+++L+EG+
Sbjct: 589 DTVVGEKGILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGR 648
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
TVL IAHRLSTI+ +N + VLD GKI E G++ L+ PN ++ KLM Q+
Sbjct: 649 TVLIIAHRLSTIKNANFVAVLDHGKICEHGTHEELLLKPNGLYRKLMNKQS 699
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May mediate critical mitochondrial transport functions related to heme biosynthesis. Mus musculus (taxid: 10090) |
| >sp|Q9Y7M7|MDL1_SCHPO ATP-dependent permease MDL1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdl1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 272/633 (42%), Positives = 401/633 (63%), Gaps = 24/633 (3%)
Query: 20 KSLAFK--IISHK---PFSKWKLQNNEKIISRYYTSTPNNQKVGTKIKKSELKKLFTLAK 74
+SLAF + H P + Q+ KI + TPN KK + +LFTLA+
Sbjct: 101 RSLAFLKLCVRHNSTVPSKDEQAQDISKINTNGTLQTPN--------KKVNVFRLFTLAR 152
Query: 75 SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKE---MKEKMTSLSLLLMLVF 131
+ A LLLVSS +TM++P+ +GK++D + D M + + L+ +F
Sbjct: 153 GQGWNFFIAGSLLLVSSGVTMSIPYIVGKILDAGSSGDSSVTHIMGIPSGTFYIGLLGLF 212
Query: 132 VVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLV 191
+G+ CNFGR+ + + ++ I +LR RLF +S + A+FD HK G+LI+R++ D+S+V
Sbjct: 213 FLGSACNFGRIITLRLLSERIVSRLRARLFAKCMSLDGAFFDFHKHGDLISRLTTDSSIV 272
Query: 192 SQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRN 251
+ ++ +SDGLRS+V AG+ MM +S +L +IVPP+A A YG++VRK++R
Sbjct: 273 GKSLSMYLSDGLRSSVSAIAGIGMMLYVSMRLTGYMSLIVPPIALGAFFYGEYVRKLSRT 332
Query: 252 VQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFT 311
QD L + +V+EE+++N+RT ++F E+ E++ +N + +LF LAK+EA A G+FFG T
Sbjct: 333 TQDALGDLTRVSEEKLANVRTTQAFLGERQEVNRYNDYIRNLFVLAKREAFASGIFFGST 392
Query: 312 GLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGAC 371
G GNA ++++L GG MV+ ITVG LSSFLLY Y G SI GLS ++++ KGLGA
Sbjct: 393 GFLGNATVIAILALGGRMVAAGDITVGQLSSFLLYTVYAGGSIVGLSGCFTDIMKGLGAA 452
Query: 372 HRLWEIMEREPLISTSGGKFFSHSL-KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSM 430
RL+E+++ +P I+ + G ++ K + F N+ F+YP+RP A I ++LS I G+
Sbjct: 453 SRLFELLDAKPKIAPTVGIPVPVTVGKAILSFRNVGFAYPTRPSASIFDNLSFDIHPGTN 512
Query: 431 TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG 490
+++ SG GKST++ LLLR Y P +GKIL DGVDI + RS G V QEP LFSG
Sbjct: 513 VAIVAPSGGGKSTISQLLLRFYAPSSGKILADGVDISTYNVHQWRSHFGLVGQEPVLFSG 572
Query: 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550
TI ENI YG S+ ++ +I AAK AN FV+ F + T VG RG+ LSGGQKQRI
Sbjct: 573 TIGENIAYG---KSNASQEEIEDAAKRANC-SFVLSFPEKWSTQVGTRGLQLSGGQKQRI 628
Query: 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQ 608
AIARAL++ L+LDEATSALD E E +V I+ L+ + T +TIAH+L+TIR+++Q
Sbjct: 629 AIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHKLATIRRADQ 688
Query: 609 ICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
I V+ GK++E GS+ L + P + F KLM++Q
Sbjct: 689 IIVVGDGKVLEQGSFERLSR-PGTNFYKLMRWQ 720
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54BU4|ABCB1_DICDI ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 407/613 (66%), Gaps = 13/613 (2%)
Query: 32 FSKWK-LQNNEKIISRYYTSTPNNQKVGTKI--KKSELKKLFTLAKSEKRKLTGAVCLLL 88
F K+K L + EK ++Y + +++ K+ K S LK+L L++ E + A+ L+
Sbjct: 302 FKKYKRLSDKEK---QFYNQSNEEKRLNKKVEVKHSNLKRLIQLSRPELPIILAAMVALV 358
Query: 89 VSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVS 148
SS ++A+P+ G ++ V+ T+ + S +L L+++FV+G+ R +L ++
Sbjct: 359 FSSLTSLAMPYFFGSIVQVVATTHSFN---NLNSSTLALVVIFVIGSISTLVRSWLFYLA 415
Query: 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVM 208
Q ++R LF SI++QE YFD+ +TGEL++R+S+D+ ++ VT NIS R T+
Sbjct: 416 GQKFVARIRRNLFSSIVNQEIGYFDQCRTGELLSRLSSDSQVIQNSVTVNISMLFRYTIQ 475
Query: 209 VSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERIS 268
+ V ++FI + +L L+ L IVP +A +VYGK ++++ + QD+LA + EE IS
Sbjct: 476 IIGSVILLFITNWRLTLLMLGIVPVLAISTVVYGKKIKQLGKQFQDELAKSSTTGEEVIS 535
Query: 269 NIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGV 328
NIRTV+SFS+E+ + ++ ++ + + K A+A GVF G L I+ ++Y G
Sbjct: 536 NIRTVRSFSKEQKFIDLYSKDINGSYLIGKSLAVATGVFSGIVFLVAQLAIVLIVYVGAR 595
Query: 329 MVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSG 388
V T++ G+L+SFLLY + +S+ +S+ ++ K +G+ R++EI +R P I+ SG
Sbjct: 596 QVLDGTLSTGDLTSFLLYTLSLAMSLAFISSLMTDFLKAIGSSDRIFEIFDRVPAINVSG 655
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
GK + L GEI+ ++ FSYP+RP+ +L L+LK+ G++T+++G SG GKST+ ++
Sbjct: 656 GKQIQNPL-GEIELKDVEFSYPTRPNNSVLKGLNLKLSKGTITALVGPSGGGKSTVIAMI 714
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508
R YDP +G I DG+DIKELDP++ R IG VSQEP LF+G+I +NI +G NDS+ T
Sbjct: 715 ERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFG-NDSA--TM 771
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
II AA++ANA+ F+ +F+NG+DTIVGERG+ LSGGQKQR+AIARA+I+ ILLLDEA
Sbjct: 772 DQIISAAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRVAIARAMIQNPMILLLDEA 831
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
TSALDAE+EYLV+ AI+++++ +TV+ IAHRLST+ +N + V+++GKI E+G++ L+
Sbjct: 832 TSALDAESEYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEEMGTHKELLN 891
Query: 629 NPNSMFNKLMKYQ 641
N + +++ L+K Q
Sbjct: 892 NTDGIYHNLVKRQ 904
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P33311|MDL2_YEAST ATP-dependent permease MDL2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/582 (41%), Positives = 364/582 (62%), Gaps = 14/582 (2%)
Query: 68 KLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS---DKKEMKEKMTSLS 124
+LF LAK + + L A+ LL +S SI M++P +G V+D + TS D ++K + SL
Sbjct: 107 RLFMLAKRDWKLLLTAILLLTISCSIGMSIPKVIGIVLDTLKTSSGSDFFDLKIPIFSLP 166
Query: 125 LLLMLVF-----VVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGE 179
L L F ++G NFGR L+ + ++ + +LR + + Q+ +FD HK G+
Sbjct: 167 LYEFLSFFTVALLIGCAANFGRFILLRILSERVVARLRANVIKKTLHQDAEFFDNHKVGD 226
Query: 180 LINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAI 239
LI+R+ +D +VS+ +TQ +SDG+++ + GV MM +S +L+++ L PPV A
Sbjct: 227 LISRLGSDAYVVSRSMTQKVSDGVKALICGVVGVGMMCSLSPQLSILLLFFTPPVLFSAS 286
Query: 240 VYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKK 299
V+GK +R ++++Q+ +VAEE++S I+TV+SF E E+S +N + D+F++ K
Sbjct: 287 VFGKQIRNTSKDLQEATGQLTRVAEEQLSGIKTVQSFVAEGNELSRYNVAIRDIFQVGKT 346
Query: 300 EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSN 359
A FF T L G+ L+VL YG +V +++G+L++F+LY Y G ++ GLS
Sbjct: 347 AAFTNAKFFTTTSLLGDLSFLTVLAYGSYLVLQSQLSIGDLTAFMLYTEYTGNAVFGLST 406
Query: 360 FYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILN 419
FYSE+ +G GA RL+E+ +R+P IS + G + +G I+F ++ FSYP+RP I
Sbjct: 407 FYSEIMQGAGAASRLFELTDRKPSISPTVGHKYKPD-RGVIEFKDVSFSYPTRPSVQIFK 465
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
+L+ KI GS ++G SG GKST+A+LLLR Y+P G I ID DI +L+ LR IG
Sbjct: 466 NLNFKIAPGSSVCIVGPSGRGKSTIALLLLRYYNPTTGTITIDNQDISKLNCKSLRRHIG 525
Query: 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
V QEP L SGTI +NI YG+ + + TK +I AK+ + F+ F N +DT++G G
Sbjct: 526 IVQQEPVLMSGTIRDNITYGL--TYTPTKEEIRSVAKQCFCHNFITKFPNTYDTVIGPHG 583
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK--TVLTIA 597
+LSGGQKQRIAIARALIKK IL+LDEATSALD E+E + +L++ K T+++IA
Sbjct: 584 TLLSGGQKQRIAIARALIKKPTILILDEATSALDVESEGAINYTFGQLMKSKSMTIVSIA 643
Query: 598 HRLSTIRKSNQICVL-DKGKIVEIGSYAHLIKNPNSMFNKLM 638
HRLSTIR+S + VL G +VE+G + L NP S ++L+
Sbjct: 644 HRLSTIRRSENVIVLGHDGSVVEMGKFKELYANPTSALSQLL 685
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P33310|MDL1_YEAST ATP-dependent permease MDL1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 257/659 (38%), Positives = 399/659 (60%), Gaps = 26/659 (3%)
Query: 2 ALYCCHLSKKIYKNLFFNKSLAFKIISHKP---FSKWKLQNNEKIISRYYTSTPNNQKVG 58
ALY +K ++K + K+ II H+ +LQ++ I++ ST K+
Sbjct: 24 ALYS---TKSLFKPPMYQKAEINLIIPHRKHFLLRSIRLQSD---IAQGKKSTKPTLKLS 77
Query: 59 TKIKKS----ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKK 114
KS ++K+LF L+K E + + A+ L+L+SSS++MAVP +GK++D+ SD +
Sbjct: 78 NANSKSSGFKDIKRLFVLSKPESKYIGLALLLILISSSVSMAVPSVIGKLLDLASESDGE 137
Query: 115 EMKEKMTSLSLL----------LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSI 164
+ +E S L L VF++GA N R+ ++ V+ + + +LR R +
Sbjct: 138 D-EEGSKSNKLYGFTKKQFFTALGAVFIIGAVANASRIIILKVTGERLVARLRTRTMKAA 196
Query: 165 ISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224
+ Q+ + D ++ G+LI+R+S+D S+V++ VTQN+SDG R+ + G MM +S KL
Sbjct: 197 LDQDATFLDTNRVGDLISRLSSDASIVAKSVTQNVSDGTRAIIQGFVGFGMMSFLSWKLT 256
Query: 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMS 284
+ +I+ PP+ +A++YG+ +R ++R +Q + +VAEE+++ RT++++ EK E+
Sbjct: 257 CVMMILAPPLGAMALIYGRKIRNLSRQLQTSVGGLTKVAEEQLNATRTIQAYGGEKNEVR 316
Query: 285 HFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFL 344
+ ++ ++F + KEA+ G+FFG TGL GN +LS+L G M+ ++TVG LSSF+
Sbjct: 317 RYAKEVRNVFHIGLKEAVTSGLFFGSTGLVGNTAMLSLLLVGTSMIQSGSMTVGELSSFM 376
Query: 345 LYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNN 404
+YA Y G S+ GLS+FYSEL KG GA R++E+ +R+PLI + GK + I F N
Sbjct: 377 MYAVYTGSSLFGLSSFYSELMKGAGAAARVFELNDRKPLIRPTIGKDPVSLAQKPIVFKN 436
Query: 405 IRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464
+ F+YP+RP I DL++ I+ G +G SGSGKST+A LLLR YD +G I
Sbjct: 437 VSFTYPTRPKHQIFKDLNITIKPGEHVCAVGPSGSGKSTIASLLLRYYDVNSGSIEFGDE 496
Query: 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
DI+ + R IG V QEP LF+GTI +NILY + + I A +AN F+
Sbjct: 497 DIRNFNLRKYRRLIGYVQQEPLLFNGTILDNILYCIPPEIAEQDDRIRRAIGKANCTKFL 556
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+F +G T+VG RG LSGGQKQRIA+ARA + +L+LDEATSALD+++E +V +
Sbjct: 557 ANFPDGLQTMVGARGAQLSGGQKQRIALARAFLLDPAVLILDEATSALDSQSEEIVAKNL 616
Query: 585 EKLIE-GKTVLTIAHRLSTIRKSNQICVLDK-GKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
++ +E G T ++IAHRLSTI+ S ++ VL K G +VE GS+ LI PNS N L+ Q
Sbjct: 617 QRRVERGFTTISIAHRLSTIKHSTRVIVLGKHGSVVETGSFRDLIAIPNSELNALLAEQ 675
|
Mediates export of peptides with molecular masses of 2100 to 600 daltons generated upon proteolysis of mitochondrial inner membrane proteins. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/579 (38%), Positives = 369/579 (63%), Gaps = 8/579 (1%)
Query: 68 KLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVI-----YTSDKKEMKEKMTS 122
++ LA+ + KL A LLV+S + VP GK+ID++ DK + + +T
Sbjct: 43 RVIKLARHDAGKLVIATMALLVASLSNILVPKYGGKIIDIVSRDVRRPEDKAQALDDVTG 102
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
L ++++ V G+ C R +L N +++ + +LR+ LF +++QE A+FD +TGEL++
Sbjct: 103 TILYIVIIVVTGSVCTALRAWLFNSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLS 162
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYG 242
R+S DT ++ T N+S+ LR+ S G+ MF S KL L++L+IVP ++ +G
Sbjct: 163 RLSEDTQIIKNAATTNLSEALRNITTTSIGLGFMFATSWKLTLLALVIVPVISIAVRKFG 222
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+F+R+++ Q A A +AEE IRTV+SF+QE E+ + K+D+ +L K+A
Sbjct: 223 RFLRELSHQTQAAAAVASSIAEESFGAIRTVRSFAQESHEVLRYGEKVDETLKLGLKQAK 282
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
G+F G + ++ V+ YG + +T G+L+SF+LY+ +G S+ LS Y+
Sbjct: 283 VVGMFSGGLNAASTLSVVIVVIYGANLTINGYMTTGSLTSFILYSLTVGSSVSALSGLYT 342
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
+ K GA R++++++R ++ SG + ++ GE++ +++ F+YPSRP +IL ++
Sbjct: 343 TVMKASGASRRVFQLLDRVSSMANSGDRCPTNENDGEVELDDVWFAYPSRPSHMILKGIT 402
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
LK+ GS +++G SG GK+T+A L+ R YDP G+IL++GV + E+ +L ++ VS
Sbjct: 403 LKLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGRILLNGVPLPEISHQFLHRKVSIVS 462
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
QEP LF+ +I ENI YG+ +S +D+ +AAK ANA+ F+ F + + T+VGERGI L
Sbjct: 463 QEPVLFNCSIEENIAYGLEGKAS--SADVENAAKMANAHNFICSFPDQYKTVVGERGIRL 520
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQKQR+AIARAL+ ++LLLDEATSALDAE+EYLVQ A++ L++G+TVL IAHRLST
Sbjct: 521 SGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 580
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
++ ++ + V+ G+IVE G++ L+ + ++ L+K Q
Sbjct: 581 VKSADTVAVISDGQIVESGTHDELLSR-DGIYTALVKRQ 618
|
May be involved in redistribution of internalized aluminum. May mediate vacuolar sequestration of a metal complex. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P97998|MDL1_CANAX ATP-dependent permease MDL1 OS=Candida albicans GN=MDL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/609 (39%), Positives = 378/609 (62%), Gaps = 32/609 (5%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIY-------------- 109
SE+ KL LAK E + + A+ L+ +S+ +MA+P +GK+ID
Sbjct: 81 SEIFKLLRLAKPESKLIFFALICLVTTSATSMALPLMIGKIIDTTKKDDDDDKDNDNDDK 140
Query: 110 ----TSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165
SDK L ++F+V A NFGR+YL+ + + +LR RLF I+
Sbjct: 141 DDTQPSDKLIFGLPQPQFYSALGVLFIVSASTNFGRIYLLRSVGERLVARLRSRLFSKIL 200
Query: 166 SQETAYFD------KHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFII 219
+Q+ +FD KTG+LI+RI++DT ++S+ ++ NISDG+R+ + G+SMM +
Sbjct: 201 AQDAYFFDLGPSKTGMKTGDLISRIASDTQIISKSLSMNISDGIRAIISGCVGLSMMCYV 260
Query: 220 SSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQE 279
S KL+L +I PP+ ++ YG+ ++ +++ +Q+ + + +V EE+++ ++ +++FSQ+
Sbjct: 261 SWKLSLCMSLIFPPLITMSWFYGRKIKALSKLIQENIGDMTKVTEEKLNGVKVIQTFSQQ 320
Query: 280 KLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGN 339
+ + +N ++ ++F + +EA G F+ G GN ++ +L G ++ +TVG+
Sbjct: 321 QSVVHSYNQEIKNIFNSSMREAKLAGFFYSTNGFIGNVTMIGLLIMGTKLIGAGELTVGD 380
Query: 340 LSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGE 399
LSSF++YA Y G S+ GL NFY+EL KG+GA R++E++E +P IS GK L G+
Sbjct: 381 LSSFMMYAVYTGTSVFGLGNFYTELMKGIGAAERVFELVEYQPRISNHLGKKVDE-LNGD 439
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F I F+YPSRP++ I DL+L I+ G ++G SGSGKST++ LLLR YDP+ G I
Sbjct: 440 IEFKGIDFTYPSRPESGIFKDLNLHIKQGENVCLVGPSGSGKSTVSQLLLRFYDPEKGTI 499
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
I I +L+ + RS++G V QEP LFSGTI ENIL+G D+ T +I +A +
Sbjct: 500 QIGDDVITDLNLNHYRSKLGYVQQEPLLFSGTIKENILFGKEDA---TDEEINNALNLSY 556
Query: 520 AYGFVIDFKNGFDTIVG-ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A FV +G DT +G LSGGQKQR+++AR LI+ KIL+LDEATSALD+ +E
Sbjct: 557 ASNFVRHLPDGLDTKIGASNSTQLSGGQKQRVSLARTLIRDPKILILDEATSALDSVSEE 616
Query: 579 LVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDK-GKIVEIGSYAHLIKNPNSMFN 635
+V S + +L + G T+++IAHRLSTI+ S++I V ++ G+IVE G + L +PNS FN
Sbjct: 617 IVMSNLIQLNKNRGVTLISIAHRLSTIKNSDRIIVFNQDGQIVEDGKFNELHNDPNSQFN 676
Query: 636 KLMKYQTMD 644
KL+K +++
Sbjct: 677 KLLKSHSLE 685
|
Candida albicans (taxid: 5476) |
| >sp|Q9CXJ4|ABCB8_MOUSE ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/572 (37%), Positives = 360/572 (62%), Gaps = 13/572 (2%)
Query: 80 LTGAVCLLLVSSSITMAVPFALGKVIDVI--YTSDK-KEMKEKMTSLSLLLMLVFVVGAC 136
L A+ L L ++ + + +P LG++++++ YT D + LS+ L+L++ V
Sbjct: 130 LGAAIVLALGAALVNVQIPLLLGQLVEIVAKYTRDHMGSFVSESRKLSVQLLLLYGVQGL 189
Query: 137 CNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVT 196
FG + L++ + + +R+ LF S++ Q+ A+FD KTG+L++R++ D
Sbjct: 190 LTFGYLVLLSHIGERMAMDMRKALFSSLLRQDIAFFDAKKTGQLVSRLTTDVQEFKSSFK 249
Query: 197 QNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256
IS GLRS V + + ++S +L L+ ++ P + G+ + G +RK++R Q+++
Sbjct: 250 LVISQGLRSCTQVIGSLVSLSMLSPRLTLMLAVVTPALMGVGTLMGSGLRKLSRQCQEQI 309
Query: 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV--FFGFTGLS 314
A A VA+E + N+RTV++F+ EK E + A+++ K E L +G+ F G + ++
Sbjct: 310 ARATGVADEALGNVRTVRAFAMEKREEERYQAELESC--CCKAEELGRGIALFQGLSNIA 367
Query: 315 GNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRL 374
N ++L L+ GG +V+ + + G+L SFL+ + + S+ LS + ++ +GL A R+
Sbjct: 368 FNCMVLGTLFIGGSLVAGQQLKGGDLMSFLVASQTVQRSMASLSVLFGQVVRGLSAGARV 427
Query: 375 WEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSV 433
+E M P+I +GG + ++G I F N+ FSYP RP +L D +LK+ SG + ++
Sbjct: 428 FEYMALSPVIPLTGGYCIPNKDIRGSITFQNVTFSYPCRPGFNVLKDFTLKLPSGKIVAL 487
Query: 434 IGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSGTI 492
+G SG GK+T+A LL R YDP+ G + +DG D++ L+P +LR Q IG +SQEP LF+ TI
Sbjct: 488 VGQSGGGKTTVASLLERFYDPEAGSVTLDGHDLRTLNPSWLRGQVIGFISQEPVLFATTI 547
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
ENI +G D+S ++ AA+EANA+ F+ F +G+ T+VGERG LSGGQKQR+AI
Sbjct: 548 MENIRFGKLDASD---EEVYTAAREANAHEFISSFPDGYSTVVGERGTTLSGGQKQRLAI 604
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
ARALIK+ +L+LDEATSALDAE+E +VQ A+++ G+TVL IAHRLST+R ++ I V+
Sbjct: 605 ARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVM 664
Query: 613 DKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
G++ E G++ L+K ++++L++ QT+D
Sbjct: 665 ANGQVCEAGTHEELLKK-GGLYSELIRRQTLD 695
|
Mus musculus (taxid: 10090) |
| >sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/610 (36%), Positives = 367/610 (60%), Gaps = 21/610 (3%)
Query: 39 NNEKIISRYYTSTPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVP 98
NN K+ P +V KI + L+ + + L GA+ L ++++ + +P
Sbjct: 113 NNNKV--------PLEVQVKEKIPEFSWAVLWEFVRPQLFALMGAILLAFGAAALNIQIP 164
Query: 99 FALGKVIDVIYTSDKKEMKEKMTSL---SLLLMLVFVVGACCNFGRVYLMNVSAQSITKK 155
LG +++V+ +++ M + ++ L+ ++ + G + L++ + +
Sbjct: 165 LMLGDLVNVVARHMREQAGHYMRDIQAPAVKLLGLYALQGLLTSGYIILLSRVGERVAAD 224
Query: 156 LRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSM 215
+R LF S++ Q+ A+FD +KTG+L+NR+++D IS GLRS
Sbjct: 225 MRTTLFTSLLRQDIAFFDANKTGQLVNRLTSDIQEFKSSFKLVISQGLRSATQTVGCFVS 284
Query: 216 MFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKS 275
++ IS KL ++++++P + G + G F+RK++R Q+++A A VA+E + N+RTV++
Sbjct: 285 LYFISPKLTGLTVVVLPCLVGAGALIGSFLRKLSRKAQEQVAKATGVADEALGNVRTVRA 344
Query: 276 FSQEKLEMSHFNAKMDDLFELAKKEALAKG--VFFGFTGLSGNAIILSVLYYGGVMVSYE 333
F+ E E+ + A++ A E L G VF G + + N I+L ++ GG +++ +
Sbjct: 345 FAMEDRELEMYAAEVQK--SAAMNETLGTGIAVFQGLSNIVLNCIVLGTIFAGGSLMARD 402
Query: 334 TITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIS-TSGGKFF 392
++ G+L SFL+ + + S+ +S + ++ +G+ A R++E + +P + T GG+
Sbjct: 403 DLSPGDLMSFLVASQTVQRSLASISILFGQMVRGMSAGARVFEYLALDPSVPLTGGGRIP 462
Query: 393 SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
SL G +DF NI FSYP+RP IL SL + +++G SG GKST+A LL R Y
Sbjct: 463 LDSLMGRVDFMNISFSYPTRPGNQILKHFSLTLPPCKTVAIVGESGGGKSTVAALLERFY 522
Query: 453 DPQNGKILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI 511
DP +G +++DG+DI+ LDP +LR IG +SQEP LF ++ ENI +G S T +++
Sbjct: 523 DPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFG---KPSATDAEV 579
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ AAK+ANA+ F+ F +G++T+VGERG+ LSGGQKQRIAIARAL+K IL+LDEATSA
Sbjct: 580 VSAAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSILILDEATSA 639
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
LDAE+E +VQ A+++ G+TVL IAHRLSTI+ ++ ICV+ G+IVE G++ L+
Sbjct: 640 LDAESERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAGTHLELLSK-G 698
Query: 632 SMFNKLMKYQ 641
++ +L+K Q
Sbjct: 699 GLYAELIKRQ 708
|
Danio rerio (taxid: 7955) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | ||||||
| 91081617 | 646 | PREDICTED: similar to AGAP002717-PA [Tri | 0.905 | 0.902 | 0.586 | 0.0 | |
| 328719099 | 651 | PREDICTED: ATP-binding cassette sub-fami | 0.897 | 0.887 | 0.594 | 0.0 | |
| 321454536 | 661 | ABC transporter [Daphnia pulex] | 0.954 | 0.930 | 0.535 | 0.0 | |
| 332373412 | 677 | unknown [Dendroctonus ponderosae] | 0.931 | 0.886 | 0.551 | 0.0 | |
| 291401955 | 696 | PREDICTED: ATP-binding cassette, sub-fam | 0.900 | 0.833 | 0.554 | 0.0 | |
| 301630526 | 710 | PREDICTED: ATP-binding cassette sub-fami | 0.986 | 0.894 | 0.5 | 0.0 | |
| 405964274 | 687 | ATP-binding cassette sub-family B member | 0.899 | 0.842 | 0.579 | 0.0 | |
| 449497219 | 681 | PREDICTED: ATP-binding cassette sub-fami | 0.902 | 0.853 | 0.549 | 0.0 | |
| 426334116 | 738 | PREDICTED: ATP-binding cassette sub-fami | 0.899 | 0.784 | 0.553 | 0.0 | |
| 171184400 | 738 | ATP-binding cassette sub-family B member | 0.899 | 0.784 | 0.553 | 0.0 |
| >gi|91081617|ref|XP_966724.1| PREDICTED: similar to AGAP002717-PA [Tribolium castaneum] gi|270006214|gb|EFA02662.1| hypothetical protein TcasGA2_TC008383 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/585 (58%), Positives = 448/585 (76%), Gaps = 2/585 (0%)
Query: 60 KIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS--DKKEMK 117
+I K++L +L +LAK EK KL GA+C LLVSS++TM++PF+LGKV+D+IY+S + E +
Sbjct: 54 RINKADLARLLSLAKPEKWKLFGAICFLLVSSTVTMSIPFSLGKVLDIIYSSSENSDEAR 113
Query: 118 EKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKT 177
K+ + +L+ VFV+GA CNFGRVYLM+VS +T+ LR+R+F +I+ QE +FDK T
Sbjct: 114 AKLNKVCGVLLCVFVLGAICNFGRVYLMSVSGYRMTQALRKRVFSTIMKQEQGWFDKRST 173
Query: 178 GELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGL 237
GEL+NR+SADT +V ++ NISDGLRS VMV AG MMF +S++LAL+ L IVPPVA +
Sbjct: 174 GELVNRLSADTQIVGNALSSNISDGLRSIVMVCAGTGMMFYMSAELALVGLAIVPPVAII 233
Query: 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELA 297
A++YG+F+R I+R VQD LA A VAEERI+NIRTVK+FSQE E+ + + ++ L+
Sbjct: 234 AVIYGRFLRGISRKVQDSLAGATSVAEERIANIRTVKTFSQEPREVDSYANAIKEVLGLS 293
Query: 298 KKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGL 357
+EA A+ +F+G TG SG+ II+SVLYYGGVMVS TITVGNLSSFLLYAAYIG+S+G
Sbjct: 294 YREAKARAIFYGLTGFSGHVIIISVLYYGGVMVSSNTITVGNLSSFLLYAAYIGVSLGTF 353
Query: 358 SNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVI 417
SNFYSELNK +GA R+WEI++REP+I GG +G I FN+I+FSYP+R D I
Sbjct: 354 SNFYSELNKSIGAAARIWEIIDREPIIPMKGGLVPIAPPEGHIQFNDIQFSYPARDDVRI 413
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
+ L+I G M +V+G SGSGKSTLA LLLRLYDP G++L+DG DIKE+DP +LR
Sbjct: 414 FENFKLEISPGKMVAVVGPSGSGKSTLAALLLRLYDPAKGQVLLDGQDIKEIDPSWLRRH 473
Query: 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGE 537
+G+VSQEP LFS +I +NILYG +D S VT+ +++ AKEAN Y FV +GFDT+VGE
Sbjct: 474 VGTVSQEPVLFSCSIRDNILYGADDPSKVTEDELVQVAKEANVYEFVQQLPDGFDTLVGE 533
Query: 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIA 597
RG+MLSGGQKQRIAIARALIK KILLLDEATSALDA++E+LVQ A+E++++G+TVLTIA
Sbjct: 534 RGVMLSGGQKQRIAIARALIKDPKILLLDEATSALDAQSEHLVQEALERIMKGRTVLTIA 593
Query: 598 HRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
HRLSTI+ ++ I VL G IVE G Y L+ F +LMK+QT
Sbjct: 594 HRLSTIQNADTIAVLRDGHIVEQGKYQDLLNIKKGAFRELMKHQT 638
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719099|ref|XP_001943821.2| PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/582 (59%), Positives = 459/582 (78%), Gaps = 4/582 (0%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS 122
+S++ +L++LAK EK +L AVC LLVSS++TMA+PF+ G+++D+IY SD E + K+ +
Sbjct: 60 ESKVLRLYSLAKPEKNRLICAVCFLLVSSAVTMAIPFSFGRIVDIIYKSDVTEAQSKLVT 119
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
+ +L+ VF++GA CNFGR+YL+N S ITK LRE LF S++SQETAYFD+H+TGELIN
Sbjct: 120 ICTILLPVFLIGAACNFGRIYLINTSGYKITKTLRELLFKSLLSQETAYFDRHRTGELIN 179
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYG 242
R+S+D LVSQ +T NISDGLRST+MV++GVS MF +S KLAL+ L IVPP+A LA++YG
Sbjct: 180 RLSSDCLLVSQTITTNISDGLRSTIMVASGVSFMFFVSPKLALVGLSIVPPIAALAVIYG 239
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+FVRKITR+VQD LA + QVAEE+ISNIRTVK+FSQE EM + KM+++ +L+ KE+
Sbjct: 240 RFVRKITRSVQDSLAASNQVAEEKISNIRTVKAFSQENKEMFLYRKKMNEVLQLSIKESF 299
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
+G+FF TG +GN II+SVLY GG++VS + I+VG LSSFLLYAAY G+SIGGLS FYS
Sbjct: 300 MRGLFFAMTGFAGNFIIISVLYSGGLLVSEQAISVGELSSFLLYAAYTGVSIGGLSTFYS 359
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
++N+GLGA R+WEI++R+P I SGG + KG+I F NI F+YP+RPDA ILN L+
Sbjct: 360 DVNRGLGASSRIWEIIDRKPSIPISGGLKPLNDPKGDISFQNIVFNYPNRPDAPILNGLN 419
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L+I SG + +++G SGSGKSTL LLLRLYDPQ+G++ +D D+K DP++L IG VS
Sbjct: 420 LEIPSGMIYALVGHSGSGKSTLGHLLLRLYDPQSGQVCLDKTDLKMYDPIWLHGHIGVVS 479
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIM 541
QEP LFSGT+ ENI YG VT ++II AAKEANAY F++ F +GFDTIVGERG++
Sbjct: 480 QEPVLFSGTVRENIAYG---RECVTDNEIIDAAKEANAYDFIVQKFPDGFDTIVGERGVL 536
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQRIAIARAL+K KILLLDEATSALDAE+E L+Q A++++ +G+TVLTIAHRLS
Sbjct: 537 LSGGQKQRIAIARALLKNPKILLLDEATSALDAESEKLIQEALQRVSKGRTVLTIAHRLS 596
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTM 643
TI+ ++++ V+ GKI E+GSY L+ + +F KL K Q +
Sbjct: 597 TIKNADKLAVIFNGKIAELGSYDALMSIEDGLFRKLNKNQLL 638
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321454536|gb|EFX65703.1| ABC transporter [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/626 (53%), Positives = 472/626 (75%), Gaps = 11/626 (1%)
Query: 28 SHKPFSKWKLQNNEKIISRYYTSTP---------NNQKVGTKIKKSELKKLFTLAKSEKR 78
S +P S K R+++ST +KV K+K E+++L LAK EK
Sbjct: 32 SLQPASPGKSNGGANCSWRFFSSTSALLRNSGLKTAEKVKPKLKSEEVRRLIGLAKPEKY 91
Query: 79 KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCN 138
+L G + LL VSS+ITM +PFA+GKVID+I +++++ M E +T++SL+L+ +F+ GA CN
Sbjct: 92 RLLGGIGLLFVSSAITMVIPFAIGKVIDII-SANQESMVENLTNVSLILVGIFIFGAACN 150
Query: 139 FGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQN 198
FGR YLM+V+ + IT+ +R ++ +I+ Q+ +FDK++TGEL+NR+S DT+LVS+CVT N
Sbjct: 151 FGRTYLMSVAGERITQTMRRNVYAAIVKQDVKFFDKNQTGELVNRLSTDTTLVSKCVTAN 210
Query: 199 ISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLAN 258
++DG+RS+ +V + +SMMF S ++AL+ L IVPPVAGL IVYG+FV+KIT+ VQD LA
Sbjct: 211 LADGIRSSALVVSAISMMFYTSPQIALVGLSIVPPVAGLTIVYGRFVKKITKKVQDALAQ 270
Query: 259 AVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAI 318
A QV EERISNIRTV++F QEK E +N ++D + L KEA A+G FF TG +GNAI
Sbjct: 271 ATQVTEERISNIRTVRAFGQEKREFERYNEQIDHVLTLGYKEAKARGTFFALTGFAGNAI 330
Query: 319 ILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIM 378
I+S LYYGG+MV+ ++TVG LS+FLLYAAY+GIS+GGLS+ YSE+ KGLGA R+W+++
Sbjct: 331 IISGLYYGGLMVADSSLTVGQLSAFLLYAAYVGISMGGLSSSYSEMMKGLGASTRIWQLI 390
Query: 379 EREPLISTSGGKFF-SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSS 437
+ P I SGG + +G I F ++ F+YP+R D I N+L+L I +GS+T+++GSS
Sbjct: 391 DTRPDIPISGGPVIPAGQFEGSIRFRDLSFAYPTRSDVPIFNNLNLSIPAGSVTAIVGSS 450
Query: 438 GSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497
GSGKST+A LLLR YDP +G++L+D IK+LDP +LR+ IG+VSQEP+LFS +I ENIL
Sbjct: 451 GSGKSTIAALLLRFYDPTSGQVLVDNHSIKDLDPQWLRANIGTVSQEPSLFSCSIRENIL 510
Query: 498 YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557
YG D +SV++ +I AAKEANA+ F+ G DT+VGERG++LSGGQ+QRIAIARA++
Sbjct: 511 YGAIDPNSVSEEQVIQAAKEANAWSFIQKCPQGLDTVVGERGVLLSGGQRQRIAIARAIV 570
Query: 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
K +ILLLDEATSALDAE+E L+Q A+E++ +G+TVLTIAHRLSTIRK++QI VL+ G++
Sbjct: 571 KNPRILLLDEATSALDAESESLIQEALERVTKGRTVLTIAHRLSTIRKASQIAVLEHGQV 630
Query: 618 VEIGSYAHLIKNPNSMFNKLMKYQTM 643
VE+G+Y L+ P+ +F KL++ QT+
Sbjct: 631 VELGTYEALVSIPDGVFKKLVELQTI 656
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332373412|gb|AEE61847.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/609 (55%), Positives = 456/609 (74%), Gaps = 9/609 (1%)
Query: 42 KIISRYYTSTPN-------NQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSIT 94
++ RY + +P N + K++K++L +LF LAK EK +LT A+ LLVSS+++
Sbjct: 65 EMFRRYNSKSPKSPEKPEVNVRKAPKLRKTDLSRLFALAKPEKWRLTSAIGFLLVSSTVS 124
Query: 95 MAVPFALGKVIDVIYT--SDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSI 152
MAVPF+LGK++D+IYT D + K K+ + +L+ VFV+G CNFGRVY M+++ +
Sbjct: 125 MAVPFSLGKILDIIYTKAEDFDKAKAKLNKVCGILLSVFVLGGLCNFGRVYCMSIAGYRM 184
Query: 153 TKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAG 212
T+ LR ++F SI+ QE +FDK TGELINR+S+DT +V ++QNISDGLRSTVMV AG
Sbjct: 185 TQALRTKVFESIVKQEQGWFDKRPTGELINRLSSDTQVVGHALSQNISDGLRSTVMVIAG 244
Query: 213 VSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRT 272
SMMF +S KLAL+ L IVPPVAG A++YG++VR I+R +QD LA+A +VAEE+ISN+RT
Sbjct: 245 TSMMFYMSPKLALVGLAIVPPVAGAAVIYGRYVRGISRKLQDSLADATKVAEEKISNMRT 304
Query: 273 VKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSY 332
VK+F+QE E+ ++ + ++ L EA A+ VF+G TG SG+ II+SVLYYGGVMV+
Sbjct: 305 VKAFAQEPREIENYIHSIKNVLNLGYLEAKARAVFYGMTGFSGHVIIISVLYYGGVMVTS 364
Query: 333 ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFF 392
+++G+LSSFLLYAAYIG+S+GGLS+FYSELNK +GA R+WEIM+R P I +GG
Sbjct: 365 NELSIGHLSSFLLYAAYIGVSVGGLSSFYSELNKSVGAAQRIWEIMDRTPAIPVTGGIRP 424
Query: 393 SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
+G I++ NI+FSYPSR D I DL L I G M +V+G SGSGKSTLA LLLRLY
Sbjct: 425 VTDPEGHIEYKNIKFSYPSRKDIQIFKDLELDIAPGKMVAVVGPSGSGKSTLAALLLRLY 484
Query: 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII 512
DP++G + +DG +I++LDP ++R IG+VSQEP LFS +I +NILYG ++ ++T+ ++I
Sbjct: 485 DPEDGAVYLDGHNIQDLDPSWVRRHIGTVSQEPILFSSSIRDNILYGADNPETITQDELI 544
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+KEAN + FV GFDT+VGERG+MLSGGQKQR+AIARALIK KILLLDEATSAL
Sbjct: 545 QVSKEANVHEFVQQLPEGFDTVVGERGVMLSGGQKQRVAIARALIKNPKILLLDEATSAL 604
Query: 573 DAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
DA++E LVQ A+EK+++G+TVLTIAHRLSTI+ ++ I VL G+IVE G+Y L+ N
Sbjct: 605 DAQSERLVQDALEKIMKGRTVLTIAHRLSTIQNADTIAVLRDGQIVEKGNYQELLHKENG 664
Query: 633 MFNKLMKYQ 641
F +LMK+Q
Sbjct: 665 AFRELMKHQ 673
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291401955|ref|XP_002717342.1| PREDICTED: ATP-binding cassette, sub-family B, member 10-like [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/581 (55%), Positives = 431/581 (74%), Gaps = 1/581 (0%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS 122
+SE +KL LA E+R+L AV L VSS ITM+ PF LGK+ID+IYT+ + +K+T
Sbjct: 112 RSEARKLLELAYPERRRLAAAVGFLAVSSVITMSAPFFLGKIIDIIYTNPTVDYSDKLTR 171
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
L L L VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELIN
Sbjct: 172 LCLGLTCVFLCGAAANAVRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 231
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYG 242
R+S+DT+L+ VT+N+SDGLR+ S G+ MMF +S LA L +VPP++ LA++YG
Sbjct: 232 RLSSDTALLGHSVTENLSDGLRAGAQASVGIGMMFFVSPSLATFVLSVVPPISILAVIYG 291
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+++R++T+ QD LA A Q+AEERI NIRTV++F +E EM + +K+D + +L++KEA
Sbjct: 292 RYLRRLTKARQDSLAQATQLAEERIGNIRTVRAFGKEMTEMEKYTSKVDHVMQLSRKEAF 351
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
A+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++G+SIGGLS+FYS
Sbjct: 352 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYS 411
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDL 421
EL KGLGA RLWE+MEREP + + G S +G ++F N+ F+YP+RP+ I D
Sbjct: 412 ELMKGLGAGGRLWELMEREPKLPFNEGVVLKEKSFQGALEFKNVHFAYPARPEVPIFQDF 471
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
SL I +GS+T+++GSSGSGKST+ LLLRLYDP +G I +DG DI++L+P +LRS+IG+V
Sbjct: 472 SLSIPAGSVTALVGSSGSGKSTVVSLLLRLYDPISGAISLDGHDIRQLNPGWLRSKIGTV 531
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
SQEP LFS +I ENI YG + SSVT + + A ANA F+ +F GFDT+VGE+G++
Sbjct: 532 SQEPILFSCSIAENIAYGADSPSSVTAAQVERVAALANAASFIQNFPQGFDTVVGEKGVL 591
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQRIAIARAL+K KILLLDEATSALDAENE+LVQ A+++L+EG+TVL IAHRLS
Sbjct: 592 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLS 651
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
TI+ +N + VLD+GKI E G++ L+ P+ +F KLM Q+
Sbjct: 652 TIKNANMVAVLDQGKISEYGTHEELLSKPDGIFRKLMDKQS 692
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|301630526|ref|XP_002944367.1| PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial-like [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/650 (50%), Positives = 458/650 (70%), Gaps = 15/650 (2%)
Query: 6 CHLSKKIYKNLFFNKSLAFKIISHKPFSKWKLQNNEKIISRYYTSTPNNQKVGTKIKKS- 64
C + + Y +L ++ + + S L N R+Y+S ++Q GTK +K
Sbjct: 51 CWQTTRTYCSLRLTRNQTLWLGLPRALSHGALWTNRW---RWYSSATSSQAAGTKEEKPP 107
Query: 65 ----------ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKK 114
+L++L +LA E+ +L+ AV L VSS +TM+ PF LG+VIDV+Y+
Sbjct: 108 TTGRKDLSSQDLRRLLSLAHPERWRLSAAVGFLTVSSVVTMSAPFFLGRVIDVVYSDPTG 167
Query: 115 EMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDK 174
+ +TSL L VF+ GA N RVYLM S Q I ++LR LF S++ QE +FDK
Sbjct: 168 DFSSSLTSLCAFLSGVFLCGAAANAARVYLMQTSGQQIVRRLRSSLFASVMRQEVGFFDK 227
Query: 175 HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPV 234
+TGELINR+S+DT+L+ + +T+N+SDGLR+ S GV MMF +S +LA L IVPP+
Sbjct: 228 TRTGELINRLSSDTALLGRSLTENLSDGLRAVAQASVGVGMMFYVSPQLAAFVLGIVPPL 287
Query: 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294
+ ++YG+++RK++R QD LA Q+A+ERI +IRTV++F +E LEM ++ K+D +
Sbjct: 288 GIMGVIYGRYLRKLSRLTQDSLAETTQLADERIGSIRTVRAFGKELLEMRKYDHKIDHVL 347
Query: 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI 354
LA KEAL + FFG TGL+GN I+L+VLY GG++ +TVG LSSFL+YA ++GISI
Sbjct: 348 HLAHKEALLRSGFFGLTGLTGNLIVLAVLYKGGLLTGAAQMTVGELSSFLMYAFWVGISI 407
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLISTSGG-KFFSHSLKGEIDFNNIRFSYPSRP 413
GGLS+FYSEL KG GA RLWE+++R+P++ + G + + KG ++F ++ FSYPSRP
Sbjct: 408 GGLSSFYSELMKGFGAGGRLWELLDRKPIMPFNEGLEIQPSAFKGALEFRDVSFSYPSRP 467
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D I + L+L + +GS+ +V+G SGSGKSTL LLLRLYDPQ G++ IDG D+++L+P++
Sbjct: 468 DTNIFHGLNLFVPAGSVMAVVGPSGSGKSTLVSLLLRLYDPQVGEVHIDGYDVRQLNPLW 527
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
LRS+IG+VSQEP LFS +IYENI YG + S+VT++DI AK ANA GFV F GFDT
Sbjct: 528 LRSKIGTVSQEPVLFSCSIYENIAYGAEEPSAVTEADIRRVAKIANALGFVESFPKGFDT 587
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTV 593
+VGE+G++LSGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L+EG+TV
Sbjct: 588 VVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMEGRTV 647
Query: 594 LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTM 643
+ IAHRLSTI+ ++ + VLD+G++VE G++ L+ N +F+KLM Q +
Sbjct: 648 VIIAHRLSTIQNADSVAVLDQGRVVECGTHKELLANREGVFSKLMDKQAI 697
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405964274|gb|EKC29777.1| ATP-binding cassette sub-family B member 10, mitochondrial [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/580 (57%), Positives = 439/580 (75%), Gaps = 1/580 (0%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL 123
+E+K+L +LAKSEK KL GAV LLL+SS I++++PF +GKVID IY SD + M +T +
Sbjct: 107 TEIKRLLSLAKSEKWKLVGAVGLLLISSGISISIPFCIGKVIDTIY-SDSENMTATLTYI 165
Query: 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
+LM VFV+GA CN GR+Y+MN S I K LRE+LF SI+ QE +FDK+KTGELINR
Sbjct: 166 CQVLMCVFVIGAACNMGRIYIMNNSGNIIVKNLREKLFKSIVRQEIGFFDKNKTGELINR 225
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+S DTSLV + +T N+SDGLR+ GV MM +S KL I + +VPP+ ++ YG
Sbjct: 226 LSTDTSLVGRSITMNVSDGLRAVAQGVGGVGMMLYVSPKLTGIVVCVVPPLILMSRYYGS 285
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303
+ +KIT+NVQD LANA QVAEERISNIRTV++F+QE E++ +N+K++ + +L +KEA A
Sbjct: 286 YQKKITKNVQDSLANATQVAEERISNIRTVRAFAQENKEVAAYNSKIEHVLQLMQKEAAA 345
Query: 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
G+F+G TG +GN IILSVLY GG+M+ ITVG LSSFLLYAAY +S+ G+++FYSE
Sbjct: 346 LGLFWGLTGFTGNLIILSVLYSGGIMMQSSMITVGELSSFLLYAAYATVSLSGMTSFYSE 405
Query: 364 LNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSL 423
L KG+GA R+WE+ +R P I SGG S G I+F NI FSY +R +++I NDLSL
Sbjct: 406 LMKGIGASARIWELTDRVPQIPISGGLIPSTHTAGSIEFKNIMFSYSTRAESLIFNDLSL 465
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
+ G +T+V+GSSGSGKSTL LLLR YDPQNG + +DG +IK LDP +LR+QIG+VSQ
Sbjct: 466 IVPPGQITAVVGSSGSGKSTLGSLLLRFYDPQNGGVFLDGHNIKTLDPHWLRNQIGTVSQ 525
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
EP LFS +I ENI+YG D +VT ++I AA++ANA F+ F NGFDTIVGERG+MLS
Sbjct: 526 EPALFSCSIAENIVYGAPDMDAVTPAEIESAARKANAINFIKSFPNGFDTIVGERGLMLS 585
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GGQ+QR+AIARA++K KILLLDEATSALDAE+E+LVQ A+EKL+ +TV+TIAHRLSTI
Sbjct: 586 GGQRQRLAIARAILKDPKILLLDEATSALDAESEFLVQDALEKLMVDRTVITIAHRLSTI 645
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTM 643
R +NQI VLD G + E+G Y L+K N +F KL++ QT+
Sbjct: 646 RSANQIAVLDLGAVAELGPYQELMKLQNGIFRKLVERQTI 685
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|449497219|ref|XP_002190914.2| PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/582 (54%), Positives = 433/582 (74%), Gaps = 1/582 (0%)
Query: 61 IKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKM 120
++ S ++L +LA E+R+LT AV L VSS ITM+ PF +GKVID+IYT+ ++ + +
Sbjct: 75 LRASRARRLLSLAHPERRRLTAAVGFLAVSSVITMSAPFFMGKVIDIIYTNPSEDFTDSL 134
Query: 121 TSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL 180
TSL LL +F+ G N RVYLM + Q I +LR +F SI+ QE A+FDK +TGEL
Sbjct: 135 TSLCALLSGIFLCGGAANATRVYLMQTAGQRIVNRLRATMFSSIVKQEIAFFDKTRTGEL 194
Query: 181 INRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240
INR+S+DT+L+ + VT+N+SDGLR+ S GV MMF +S LA L +VPP+A LA++
Sbjct: 195 INRLSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLAAFVLSVVPPLAVLAVI 254
Query: 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300
YG+++RK+T+ QD LA A Q+AEERI NIRTV++F QE EM + K+D + +LAKKE
Sbjct: 255 YGRYLRKLTKMTQDSLAEATQLAEERIGNIRTVRAFGQEVTEMEKYTNKVDYVLQLAKKE 314
Query: 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
ALA+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+F
Sbjct: 315 ALARAGFFGATGLSGNLIVLSVLYKGGLLMGSAYMTVGELSSFLMYAFWVGISIGGLSSF 374
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSL-KGEIDFNNIRFSYPSRPDAVILN 419
YSEL KGLGA RLWE++ER+P + + G + +G ++F ++ F+YP+RP+ I
Sbjct: 375 YSELMKGLGAGGRLWELIERKPQLPFNEGITLGKDVFRGALEFKDVEFAYPTRPEVSIFK 434
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
D SL I +GS+ +++G SG+GKST+ LLLRLYDP +G I +DG DI++L+P++ R++IG
Sbjct: 435 DFSLSIPAGSVMALVGPSGTGKSTIVSLLLRLYDPISGTITVDGFDIRQLNPLWFRTKIG 494
Query: 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
+VSQEP LFS +I ENI YG D S+VT +I A+ ANA F+ DF GFDT+VGE+G
Sbjct: 495 TVSQEPILFSCSIAENIAYGAEDPSTVTAEEIQKVAEIANAASFIRDFPKGFDTVVGEKG 554
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599
I+LSGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L+EG+TVL IAHR
Sbjct: 555 ILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMEGRTVLIIAHR 614
Query: 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
LSTI+ ++ + VL +GKI+E G + L+ NPN +F KLM+ Q
Sbjct: 615 LSTIQNADSVAVLGQGKILECGKHEELLANPNGLFRKLMQKQ 656
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|426334116|ref|XP_004028608.1| PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial [Gorilla gorilla gorilla] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/580 (55%), Positives = 432/580 (74%), Gaps = 1/580 (0%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL 123
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + + +T L
Sbjct: 155 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRL 214
Query: 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
L L VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR
Sbjct: 215 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINR 274
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+S+DT+L+ + VT+N+SDGLR+ S G+SMMF +S LA L +VPPV+ +A++YG+
Sbjct: 275 LSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGR 334
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303
++RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A
Sbjct: 335 YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 394
Query: 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSE
Sbjct: 395 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 454
Query: 364 LNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D S
Sbjct: 455 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFS 514
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VS
Sbjct: 515 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGQDIRQLNPVWLRSKIGTVS 574
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
QEP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++L
Sbjct: 575 QEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 634
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLST
Sbjct: 635 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 694
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
I+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 695 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 734
|
Source: Gorilla gorilla gorilla Species: Gorilla gorilla Genus: Gorilla Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|171184400|ref|NP_036221.2| ATP-binding cassette sub-family B member 10, mitochondrial [Homo sapiens] gi|143811359|sp|Q9NRK6.2|ABCBA_HUMAN RecName: Full=ATP-binding cassette sub-family B member 10, mitochondrial; AltName: Full=ATP-binding cassette transporter 10; Short=ABC transporter 10 protein; AltName: Full=Mitochondrial ATP-binding cassette 2; Short=M-ABC2; Flags: Precursor gi|40787796|gb|AAH64930.1| ATP-binding cassette, sub-family B (MDR/TAP), member 10 [Homo sapiens] gi|119590307|gb|EAW69901.1| ATP-binding cassette, sub-family B (MDR/TAP), member 10 [Homo sapiens] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/580 (55%), Positives = 432/580 (74%), Gaps = 1/580 (0%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL 123
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + + +T L
Sbjct: 155 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRL 214
Query: 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
L L VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR
Sbjct: 215 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINR 274
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+S+DT+L+ + VT+N+SDGLR+ S G+SMMF +S LA L +VPPV+ +A++YG+
Sbjct: 275 LSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGR 334
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303
++RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A
Sbjct: 335 YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 394
Query: 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSE
Sbjct: 395 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 454
Query: 364 LNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D S
Sbjct: 455 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFS 514
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VS
Sbjct: 515 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 574
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
QEP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++L
Sbjct: 575 QEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 634
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLST
Sbjct: 635 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 694
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
I+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 695 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 734
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | ||||||
| ZFIN|ZDB-GENE-040525-2 | 710 | abcb10 "ATP-binding cassette, | 0.902 | 0.818 | 0.541 | 1.6e-166 | |
| UNIPROTKB|Q9NRK6 | 738 | ABCB10 "ATP-binding cassette s | 0.897 | 0.783 | 0.540 | 7.1e-164 | |
| UNIPROTKB|E1BL88 | 652 | ABCB10 "Uncharacterized protei | 0.902 | 0.891 | 0.532 | 1e-162 | |
| RGD|1311222 | 715 | Abcb10 "ATP-binding cassette, | 0.902 | 0.812 | 0.525 | 1.9e-161 | |
| MGI|MGI:1860508 | 715 | Abcb10 "ATP-binding cassette, | 0.900 | 0.811 | 0.530 | 4e-161 | |
| UNIPROTKB|F1NDU4 | 587 | ABCB10 "Uncharacterized protei | 0.868 | 0.952 | 0.553 | 1.4e-160 | |
| UNIPROTKB|F1RG41 | 724 | ABCB10 "Uncharacterized protei | 0.869 | 0.773 | 0.543 | 2.9e-158 | |
| UNIPROTKB|F1P7B6 | 559 | ABCB10 "Uncharacterized protei | 0.858 | 0.989 | 0.539 | 2.7e-155 | |
| FB|FBgn0023536 | 692 | CG3156 [Drosophila melanogaste | 0.902 | 0.839 | 0.485 | 1.7e-146 | |
| ASPGD|ASPL0000044857 | 782 | AN2052 [Emericella nidulans (t | 0.897 | 0.739 | 0.454 | 2.5e-129 |
| ZFIN|ZDB-GENE-040525-2 abcb10 "ATP-binding cassette, sub-family B (MDR/TAP), member 10" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
Identities = 315/582 (54%), Positives = 424/582 (72%)
Query: 61 IKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKX 120
+ ++KKL LA ++ +LT AV L++SS++TM+ PF LGKVID IYTS ++
Sbjct: 116 VPSEDVKKLLQLAHPQRWRLTAAVGFLVISSTVTMSAPFFLGKVIDTIYTSPTEDFSSSL 175
Query: 121 XXXXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL 180
VF+ G N RVYLM +S Q I +KLRE LF SI+ QE +FDK +TGEL
Sbjct: 176 TSLCLMLTGVFLCGGAANAARVYLMQISGQQIVRKLRESLFSSILKQELGFFDKTRTGEL 235
Query: 181 INRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIV 240
INR+SADT++V +C+T N+SDGLRS AGV MM VPP+A LA++
Sbjct: 236 INRLSADTAIVGRCLTDNLSDGLRSLAQAGAGVGMMLYVSPSLAAFVLMVVPPIACLAVI 295
Query: 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300
+G+F+R I+R QD LA A Q+AEERISN+RTV++F +E E+ ++ K+D +FELAKKE
Sbjct: 296 FGRFLRSISRRTQDALAEATQLAEERISNLRTVRAFGKELTEVQKYSQKVDHIFELAKKE 355
Query: 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
A+ F+G TGLSGN IILSVLY GG++++ E +TVG LSSFL+YA ++GISI G S+F
Sbjct: 356 AVVSAGFYGVTGLSGNVIILSVLYKGGLLMASEAMTVGQLSSFLMYAFWVGISIAGFSSF 415
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFF-SHSLKGEIDFNNIRFSYPSRPDAVILN 419
YSEL KGLGA RLWE+++R+P + G S LKGE++F N+ F+YP+R D+ I
Sbjct: 416 YSELMKGLGAGTRLWELIDRKPEFPLNEGLVLTSELLKGELEFRNVSFAYPTRKDSPIFQ 475
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
DLSL + +GS+ +V+GSSGSGKS+L LLLRLYDP +G + +DG DI++L+P +LRS IG
Sbjct: 476 DLSLHVPAGSVLAVVGSSGSGKSSLVSLLLRLYDPDSGIVSVDGHDIRDLNPYWLRSHIG 535
Query: 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
+VSQEP LFS +I ENI YG D S VT DI AA+ ANA+ F+ +F G+DT+VGE+G
Sbjct: 536 TVSQEPVLFSCSIAENIAYGAPDPSQVTVEDIYRAAQIANAHDFIQEFPKGYDTVVGEKG 595
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599
++LSGGQKQR+AIARAL+K KILLLDEATSALDAENE+LVQ A+E+L++G+TVL IAHR
Sbjct: 596 VLLSGGQKQRVAIARALLKNPKILLLDEATSALDAENEFLVQEALERLMDGRTVLIIAHR 655
Query: 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
LSTI+ ++ + VLD+ +++EIGS++ L+ N +F KLM+ Q
Sbjct: 656 LSTIQSADSVAVLDQHRVMEIGSHSQLLANDQGLFRKLMEKQ 697
|
|
| UNIPROTKB|Q9NRK6 ABCB10 "ATP-binding cassette sub-family B member 10, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 313/579 (54%), Positives = 421/579 (72%)
Query: 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXX 124
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + +
Sbjct: 156 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC 215
Query: 125 XXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR+
Sbjct: 216 LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRL 275
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKF 244
S+DT+L+ + VT+N+SDGLR+ S G+SMMF VPPV+ +A++YG++
Sbjct: 276 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 335
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
+RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A+
Sbjct: 336 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 395
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSEL
Sbjct: 396 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSEL 455
Query: 365 NKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSL 423
KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D SL
Sbjct: 456 MKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSL 515
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VSQ
Sbjct: 516 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 575
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
EP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++LS
Sbjct: 576 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 635
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLSTI
Sbjct: 636 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI 695
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 696 KNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 734
|
|
| UNIPROTKB|E1BL88 ABCB10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
Identities = 310/582 (53%), Positives = 421/582 (72%)
Query: 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXX 121
++SE +KL +LA+ E+R+L AV L VSS ITM+ PF LGK+IDVIYT+ +
Sbjct: 67 RRSEAQKLLSLAQPERRRLAAAVGFLAVSSVITMSAPFFLGKIIDVIYTNPSADCSSSLT 126
Query: 122 XXXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
VF+ GA N RVYLM S Q I +LR LF S++ QE A+FDK +TGELI
Sbjct: 127 RLCLALGGVFLCGAAANAVRVYLMQTSGQRIVNRLRASLFSSVLKQEVAFFDKTRTGELI 186
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVY 241
NR+SAD +L+ + VT+N+SDGLR+ S G+ MMF VPPV+ +A++Y
Sbjct: 187 NRLSADAALLGRSVTENLSDGLRAGAQASVGIGMMFFVSPKLATFVLSVVPPVSIIAVLY 246
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
G+++RK+T+ QD LA A Q+AEERI NIRTV++F +E E+ + +K+D + +LA+KEA
Sbjct: 247 GRYLRKLTKVTQDSLAQATQLAEERIGNIRTVRAFGKEMTEIEKYTSKVDHVMQLARKEA 306
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
A+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++G+SIGGLS+FY
Sbjct: 307 FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGVSIGGLSSFY 366
Query: 362 SELNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILND 420
SEL KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D
Sbjct: 367 SELMKGLGAGSRLWELLEREPELPFNEGAVLNEKSFQGALEFKNVHFAYPARPEVPIFQD 426
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
SL I SGS+T+++G SG+GKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+
Sbjct: 427 FSLSIPSGSVTALVGPSGAGKSTVISLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 486
Query: 481 VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540
VSQEP LFS +I ENI YG ++ +SVT I AA ANA F+ +F GF T+VGE+G+
Sbjct: 487 VSQEPILFSCSIAENIAYGADNPASVTAEQIEQAAAVANAAAFIQNFPQGFSTVVGEKGV 546
Query: 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
+LSGGQKQRIAIARAL+K KILLLDEATSALDAENE+LVQ A+++L+EG+TV IAHRL
Sbjct: 547 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQQALDRLMEGRTVFIIAHRL 606
Query: 601 STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
STI+ +N + VLD+G+I+E G + L+ P+ M+ KLM Q+
Sbjct: 607 STIKNANVVAVLDQGRIIECGKHEELLLKPDGMYRKLMNKQS 648
|
|
| RGD|1311222 Abcb10 "ATP-binding cassette, subfamily B (MDR/TAP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
Identities = 306/582 (52%), Positives = 423/582 (72%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXX 122
+SE+ KL L + E+ +L+ AV L VSS ITM+ PF LGK+IDVIYT+ ++ +
Sbjct: 119 RSEVWKLLGLVRPERGRLSAAVGFLAVSSVITMSAPFFLGKIIDVIYTNPTEDFGDSLTR 178
Query: 123 XXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
VF+ GA N RVYLM S QSI +LR LF SI+ QE A+FDK +TGELIN
Sbjct: 179 LCAGLTCVFLCGAAANSIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 238
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYG 242
R+S+DT+L+ VT+N+SDGLR+ S GV MMF VPP++ LA++YG
Sbjct: 239 RLSSDTALLGHSVTENLSDGLRAVAQASVGVGMMFFVSPSLATFVLSVVPPISVLAVIYG 298
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+++RK+++ QD LA A Q+AEERI NIRT+++F +E E+ + +++D L +LA+KEAL
Sbjct: 299 RYLRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTSRVDQLLQLARKEAL 358
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
A+ FFG GLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++G+SIGGLS+FYS
Sbjct: 359 ARAGFFGAAGLSGNLIVLSVLYKGGLLLGSTHMTVGELSSFLMYAFWVGLSIGGLSSFYS 418
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDL 421
+L KGLGA RLWE++ER+P + + G + +G ++F N+ F+YP+RP+ + D
Sbjct: 419 QLMKGLGAGGRLWELLERQPRLPFNEGIVLDEKTFQGALEFRNVHFTYPARPEVSVFQDF 478
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
SL I SGS+T+++G SGSGKST+ LLLRLYDP +G + +DG DI++L+P++LRS+IG+V
Sbjct: 479 SLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPSSGTVSLDGHDIRQLNPVWLRSKIGTV 538
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
SQEP LFS ++ ENI YG ++ SSVT + AA+ ANA F+ F GFDT+VGE+G++
Sbjct: 539 SQEPVLFSCSVAENIAYGADNLSSVTARQVERAAEVANAAEFIRSFPQGFDTVVGEKGVL 598
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQRIAIARAL+K KILLLDEATSALDAENE+LVQ A+++L+EG+TVL IAHRLS
Sbjct: 599 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLS 658
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTM 643
TI+ +N + VL++GKI E G++ L+ PN ++ KLM Q++
Sbjct: 659 TIKNANFVAVLNQGKICEHGTHEELLLKPNGLYRKLMNKQSL 700
|
|
| MGI|MGI:1860508 Abcb10 "ATP-binding cassette, sub-family B (MDR/TAP), member 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 308/581 (53%), Positives = 420/581 (72%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXX 122
+SE+ KL L + E+ +L+ AV L VSS ITM+ PF LG++IDVIYT+ + +
Sbjct: 119 RSEVWKLLGLVRPERGRLSAAVGFLAVSSVITMSAPFFLGRIIDVIYTNPSEGYGDSLTR 178
Query: 123 XXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
VF+ GA N RVYLM S QSI +LR LF SI+ QE A+FDK +TGELIN
Sbjct: 179 LCAVLTCVFLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 238
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYG 242
R+S+DT+L+ + VT+N+SDGLR+ S GV MMF VPP++ LA++YG
Sbjct: 239 RLSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLATFVLSVVPPISVLAVIYG 298
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+++RK+++ QD LA A Q+AEERI NIRT+++F +E E+ + ++D L +LA+KEAL
Sbjct: 299 RYLRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTGRVDQLLQLAQKEAL 358
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
A+ FFG GLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++G+SIGGLS+FYS
Sbjct: 359 ARAGFFGAAGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYS 418
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDL 421
EL KGLGA RLWE++ER+P + + G + +G ++F N+ F+YP+RP+ + D
Sbjct: 419 ELMKGLGAGGRLWELLERQPRLPFNEGMVLDEKTFQGALEFRNVHFTYPARPEVSVFQDF 478
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
SL I SGS+T+++G SGSGKST+ LLLRLYDP +G + +DG DI++L+P++LRS+IG+V
Sbjct: 479 SLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTV 538
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
SQEP LFS ++ ENI YG ++ SSVT + AA+ ANA F+ F GFDT+VGE+GI+
Sbjct: 539 SQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGIL 598
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQRIAIARAL+K KILLLDEATSALDAENE+LVQ A+++L+EG+TVL IAHRLS
Sbjct: 599 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLS 658
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
TI+ +N + VLD GKI E G++ L+ PN ++ KLM Q+
Sbjct: 659 TIKNANFVAVLDHGKICEHGTHEELLLKPNGLYRKLMNKQS 699
|
|
| UNIPROTKB|F1NDU4 ABCB10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
Identities = 310/560 (55%), Positives = 409/560 (73%)
Query: 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXXXXXXXVFVVGACCNFGRV 142
AV L VSS ITM+ PF LGKVIDVIYT+ + + +F+ GA N RV
Sbjct: 3 AVGFLTVSSVITMSAPFFLGKVIDVIYTNPSDDFTDSLSSLCALLSGIFLCGAAANATRV 62
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
YLM + Q I K+LR +F SI+ QETA+FDK +TGELINR+S+DT+L+ + +T+N+SDG
Sbjct: 63 YLMQTAGQRIVKRLRTTMFSSILQQETAFFDKTRTGELINRLSSDTALLGRSLTENLSDG 122
Query: 203 LRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
LR+ S GV MMF VPP+A LA++YG+++RK+T+ QD LA A Q+
Sbjct: 123 LRAGAQASVGVGMMFFVSPSLAAFVLSIVPPLAILAVIYGRYLRKLTKMTQDSLAEATQL 182
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AEERI NIRTV++F QE EM + K+D + +LAKKEALA+ FFG TGLSGN I+LSV
Sbjct: 183 AEERIGNIRTVRAFGQEMAEMEKYTNKVDYVLQLAKKEALARAGFFGATGLSGNLIVLSV 242
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382
LY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSEL KGLGA RLWE++ER+P
Sbjct: 243 LYKGGLLMGSAYMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELIERKP 302
Query: 383 LISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGK 441
+ + G S + +G ++F +I F+YP+RP+ I D SL I +GS+ +++GSSG+GK
Sbjct: 303 QLPFNEGITLSKDTFRGALEFKDIEFAYPTRPETSIFKDFSLSIPAGSVMALVGSSGTGK 362
Query: 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN 501
ST+ LLLRLYDP G I +DG DI++L+P++ R++IG+VSQEP LFS +I ENI YG
Sbjct: 363 STIVSLLLRLYDPITGTITVDGFDIRQLNPLWFRTKIGTVSQEPILFSCSIAENIAYGAE 422
Query: 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561
D S+VT +I A+ ANA F+ DF GFDT+VGE+GI+LSGGQKQRIAIARAL+K K
Sbjct: 423 DPSTVTAEEIQKVAEIANAAHFIRDFPKGFDTVVGEKGILLSGGQKQRIAIARALLKNPK 482
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
ILLLDEATSALDAENEYLVQ A+++L+EG+TVL IAHRLSTI+ ++ + VL +GKI+E G
Sbjct: 483 ILLLDEATSALDAENEYLVQEALDRLMEGRTVLIIAHRLSTIQNADFVAVLGQGKILECG 542
Query: 622 SYAHLIKNPNSMFNKLMKYQ 641
+ L+ NPN +F KLM+ Q
Sbjct: 543 KHEELLANPNGLFRKLMQKQ 562
|
|
| UNIPROTKB|F1RG41 ABCB10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
Identities = 305/561 (54%), Positives = 403/561 (71%)
Query: 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXXXXXXXVFVVGACCNFGRV 142
AV L VSS +TM+ PF LGK+IDVIYT+ + VF GA N RV
Sbjct: 160 AVGFLAVSSVVTMSAPFFLGKIIDVIYTNPAADYSCSLTRLCLALSGVFFCGAAANAIRV 219
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
YLM S Q I +LR LF SI+ QE A+FDK +TGELINR+S+DT+L+ + VT+N+SDG
Sbjct: 220 YLMQTSGQRIVNRLRASLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 279
Query: 203 LRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
LR+ S G+ MMF VPP++ LA+VYG+++RK+TR QD LA A Q+
Sbjct: 280 LRAGAQASVGIGMMFFVSPSLATFVLSVVPPISLLAVVYGRYLRKLTRVTQDSLAQATQL 339
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AEERI NIRTV++F +E E+ + K+D + +LAKKEA A+ FFG TGLSGN I+LSV
Sbjct: 340 AEERIGNIRTVRAFGKEMTEIEKYTNKVDHVMQLAKKEAFARAGFFGATGLSGNLIVLSV 399
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382
LY GG+++ +TVG LSSFL+YA ++G+SIGGLS+FYSEL KGLGA RLWE++EREP
Sbjct: 400 LYKGGLLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYSELMKGLGAGGRLWELLEREP 459
Query: 383 LISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGK 441
+ + G + S +G ++F N+ F+YP+RP+ I D SL I SGS+T+++G SGSGK
Sbjct: 460 KLPFNDGVVLNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGK 519
Query: 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN 501
ST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VSQEP LFS +I ENI YG +
Sbjct: 520 STVISLLLRLYDPISGTISLDGQDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 579
Query: 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561
D S VT + A ANA F+ +F GF+T+VGE+G++LSGGQKQRIAIARAL+K K
Sbjct: 580 DPSLVTAEQVEKVASVANAAAFIHNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 639
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
ILLLDEATSALDAENEYLVQ A+++L+EG+TVL IAHRLSTI+ +N + VLD+G+I E G
Sbjct: 640 ILLLDEATSALDAENEYLVQQALDRLMEGRTVLIIAHRLSTIKNANMVAVLDQGRITECG 699
Query: 622 SYAHLIKNPNSMFNKLMKYQT 642
+ L+ P+ ++ KLM Q+
Sbjct: 700 KHEELLSKPDGIYRKLMNKQS 720
|
|
| UNIPROTKB|F1P7B6 ABCB10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
Identities = 299/554 (53%), Positives = 399/554 (72%)
Query: 89 VSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXXXXXXXVFVVGACCNFGRVYLMNVS 148
+SS ITM+ PF LGK+IDVIYT+ + VF+ GA N R+YLM S
Sbjct: 1 MSSVITMSAPFFLGKIIDVIYTNPTVDYGSNLTHLCLVLSGVFLCGAAANAVRIYLMQTS 60
Query: 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVM 208
Q I +LR LF S++ QE A+FDK +TGELINR+S+DT+L+ + VT+N+SDGLR+
Sbjct: 61 GQRIVNRLRTSLFSSVLRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQ 120
Query: 209 VSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERIS 268
S G+ MMF VPPV+ LA++YG+++RK+T+ QD LA A Q+AEERI
Sbjct: 121 ASVGIGMMFFVSPNLATFVLSVVPPVSILAVIYGRYLRKLTKVTQDSLAQATQLAEERIG 180
Query: 269 NIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGV 328
NIRTV++F +E E+ + +K+D + LA+KEA A+ FFG TGLSGN I+LSVLY GG+
Sbjct: 181 NIRTVRAFGKEMTEIEKYTSKVDCVMHLARKEAFARAGFFGATGLSGNLIVLSVLYKGGL 240
Query: 329 MVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSG 388
++ +TVG LSSFL+YA ++G+SIGGLS+FYSEL KGLGA RLWE++ERE + +
Sbjct: 241 LMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYSELMKGLGAGGRLWELLERERELPFNE 300
Query: 389 GKFFS-HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML 447
G + S +G ++F N+ F+YP+RP+ I D SL I S S+T+++G SGSGKST+ L
Sbjct: 301 GVILNKESFQGTLEFRNVHFAYPARPEVPIFQDFSLSIPSASVTALVGPSGSGKSTVISL 360
Query: 448 LLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507
LLRLYDP +G I +DG DI++L+P++LRS+IG+VSQEP LFS +I ENI YG +D SSVT
Sbjct: 361 LLRLYDPISGTISLDGHDIRQLNPVWLRSRIGTVSQEPILFSCSIAENIAYGADDPSSVT 420
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
I A ANA F+ +F GF+T+VGE+G++LSGGQKQRIAIARAL+K KILLLDE
Sbjct: 421 AEQIQRVADVANAGTFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 480
Query: 568 ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627
ATSALDAENEYLVQ A+++L+EG+TVL IAHRLSTI+ +N + VLD+GKI E G + L+
Sbjct: 481 ATSALDAENEYLVQEALDRLMEGRTVLIIAHRLSTIKNANMVAVLDQGKITECGKHEELL 540
Query: 628 KNPNSMFNKLMKYQ 641
P+ ++ KLM Q
Sbjct: 541 SKPDGIYRKLMNKQ 554
|
|
| FB|FBgn0023536 CG3156 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 284/585 (48%), Positives = 398/585 (68%)
Query: 60 KIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS---DKKEM 116
K+ +S+ +L +L KSEK LT + L+VSS+ITM+VP LGKVIDV++ D M
Sbjct: 103 KMGRSQYGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDVVFNKSGMDSAAM 162
Query: 117 KEKXXXXXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176
K +FV+G NF RV+L +A I + LR RL+ S++ QE +FD
Sbjct: 163 A-KLGEYSVLLFGIFVLGGFANFARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFDTKG 221
Query: 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAG 236
TGELINR+S DT +V ++QN+SDGLRS M+ G MM VP +AG
Sbjct: 222 TGELINRLSNDTLMVGTSLSQNVSDGLRSVAMIGVGTGMMIYTSPQLAAVSALVVPAMAG 281
Query: 237 LAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFEL 296
+AIVYG++VR+IT+ DK A ++ AEER N++TVK+F +E+ E++ F+ K+D+ ++
Sbjct: 282 MAIVYGRYVRRITKVELDKYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQI 341
Query: 297 AKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGG 356
KE A+ +FFG TG GN II+SVLYYGG +V +++T+G L++F+LYA Y+ IS+ G
Sbjct: 342 GYKETRARAIFFGLTGFCGNFIIISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMNG 401
Query: 357 LSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416
LSNFYS+LNKG+GA R+WEI++RE I G GE+ F N+ F++P+RP++
Sbjct: 402 LSNFYSQLNKGIGASERIWEILDRECSIPIDKGVVPLEKPVGEVGFQNVFFTFPTRPESA 461
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D SL + G+ T+V+G SGSGK+T+A+L+LRLYDPQ G + +DG+D++ ++P +LR+
Sbjct: 462 VLTDFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQGGTVHLDGIDLRTVNPQWLRN 521
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
IG+VSQEP LFS +I ENILYG N + + + ++AN F +G DT+VG
Sbjct: 522 NIGAVSQEPVLFSCSIRENILYGANPGETPSPERLQQVIEDANVSQFTDQLPDGLDTLVG 581
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+RG+MLSGGQKQR+AIARALIK IL+LDEATSALDA +E LVQ+A++ LI+G+TVLTI
Sbjct: 582 QRGMMLSGGQKQRVAIARALIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTI 641
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
AHRLSTIR ++QI VL GKIVE GSY L+ +F +L+ Q
Sbjct: 642 AHRLSTIRNADQIAVLSDGKIVEQGSYNELMGIQEGVFRELVASQ 686
|
|
| ASPGD|ASPL0000044857 AN2052 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 268/590 (45%), Positives = 381/590 (64%)
Query: 58 GTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDV-IYTSDKKEM 116
G K SE+ +L +A+ E +KL+ A L++SS+ITM++PF++GK+ID TS+ +
Sbjct: 156 GKKSGFSEVWRLLLIARPEAKKLSLAFVCLMISSAITMSLPFSIGKIIDASTKTSEDGQF 215
Query: 117 KE--KXXXXXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDK 174
+ GA N+GR+ ++ + + I + R +LF Q+ +FD
Sbjct: 216 LFGLSPTMFYGALASILAFGAAANYGRIIILRIVGERIVARTRSKLFRQTFVQDAEFFDA 275
Query: 175 HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPV 234
++ G+LI+R+S+DT +V + +TQN+SDGLR+ V + G MM +PP+
Sbjct: 276 NRVGDLISRLSSDTIIVGKSITQNLSDGLRAGVSGAVGFGMMAYVSLKLSSILALLLPPI 335
Query: 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294
AI YG+ +R ++R +Q L ++AEER+ N++T +SF+ E LE++ +N ++ +F
Sbjct: 336 GLGAIFYGRAIRNLSRKIQRNLGTLTKIAEERLGNVKTSQSFAGEILEVNRYNTQVRKIF 395
Query: 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI 354
EL KKE+L FF TGL GN IL++LY GG MV I++G L+SFL+Y AY G S+
Sbjct: 396 ELGKKESLISATFFSSTGLMGNLTILALLYVGGGMVKSGAISIGELTSFLMYTAYAGSSM 455
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLIS-TSGGKFFSHSLKGEIDFNNIRFSYPSRP 413
GLS+FYSEL KG+GA RL+E+ +R+P IS T G K S +G I F N+ FSYP+RP
Sbjct: 456 FGLSSFYSELMKGVGAASRLFELQDRQPTISPTKGTKVVS--ARGPIRFENVTFSYPTRP 513
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
I +L+ +I G+ +++G SG GKST+A LLLR Y P G++LI+G DIKE++
Sbjct: 514 AVPIFKNLNFEIPQGTNVAIVGPSGGGKSTIASLLLRFYSPSEGRVLINGRDIKEMNAKS 573
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
LR +IG V+QEP LFSGTI ENI YG S T+S+I+ AA++AN F+ DF +G DT
Sbjct: 574 LRRKIGVVAQEPVLFSGTIAENISYG---SPHSTRSEIVAAARKANCQ-FISDFPDGLDT 629
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-T 592
VG RG LSGGQKQRIAIARALIK IL+LDEATSALDAE+E LV SA+ L+ G T
Sbjct: 630 QVGPRGAQLSGGQKQRIAIARALIKDPDILILDEATSALDAESETLVNSALAALLRGNNT 689
Query: 593 VLTIAHRLSTIRKSNQICVL-DKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
++IAHRLSTI++S+ I VL + G + E G+Y L P+ F KLM++Q
Sbjct: 690 TISIAHRLSTIKRSDSIVVLGNDGTVAEQGTYEELSARPDGAFTKLMEWQ 739
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WML0 | AB27B_ARATH | No assigned EC number | 0.3982 | 0.8850 | 0.8850 | yes | N/A |
| Q54BU4 | ABCB1_DICDI | No assigned EC number | 0.4127 | 0.9316 | 0.6600 | yes | N/A |
| Q2LVL0 | MSBA_SYNAS | 3, ., 6, ., 3, ., - | 0.3339 | 0.8524 | 0.9134 | yes | N/A |
| P33311 | MDL2_YEAST | No assigned EC number | 0.4140 | 0.8819 | 0.7347 | yes | N/A |
| Q9FNU2 | AB25B_ORYSJ | No assigned EC number | 0.3886 | 0.8866 | 0.8907 | yes | N/A |
| Q9JI39 | ABCBA_MOUSE | No assigned EC number | 0.5346 | 0.9161 | 0.8251 | yes | N/A |
| Q9Y7M7 | MDL1_SCHPO | No assigned EC number | 0.4296 | 0.9456 | 0.8388 | yes | N/A |
| Q9NRK6 | ABCBA_HUMAN | No assigned EC number | 0.5534 | 0.8990 | 0.7845 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 644 | |||
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-178 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-168 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-162 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-127 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-123 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-121 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-107 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-101 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-97 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-92 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-89 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-82 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-82 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-81 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-80 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-80 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-80 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-77 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-74 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-73 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-72 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-72 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-71 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-70 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-69 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-69 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-66 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-64 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-58 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-57 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-53 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-52 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-50 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-50 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-48 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-48 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-47 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-46 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-45 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-45 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-44 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-44 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-44 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-44 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-41 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-41 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-40 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-40 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-40 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-40 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-40 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-39 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-39 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-39 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-39 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-36 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-36 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-36 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-36 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-35 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-34 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-34 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-34 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-33 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-33 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-32 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-31 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-31 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-30 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-30 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-30 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-30 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-30 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-30 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-30 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-30 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-30 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-29 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-29 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-29 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-29 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-29 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-29 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-29 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-28 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-28 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-28 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-28 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-28 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-28 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-28 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-28 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-27 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-27 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-27 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-27 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-27 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-27 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-27 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-26 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-26 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-26 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-26 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-26 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-26 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-26 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-25 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-25 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-25 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-25 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-25 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-25 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-25 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-25 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-25 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-24 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-24 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-24 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-24 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-24 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-24 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-24 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-23 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-23 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-23 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-23 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-23 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-23 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-23 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-23 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-23 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-23 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 9e-23 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-22 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-22 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-22 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-22 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-22 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-22 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-22 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-22 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-22 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-21 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-21 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-21 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-21 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-21 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-21 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-20 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-20 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-20 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-19 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-19 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-19 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-19 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-19 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-18 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-17 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-17 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-17 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-17 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-17 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-17 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-17 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-16 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-16 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-16 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 7e-16 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-15 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-15 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-15 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-14 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-14 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-14 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-14 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-12 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-12 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-12 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-12 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-11 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-10 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-09 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 9e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 4e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 523 bits (1349), Expect = e-178
Identities = 226/570 (39%), Positives = 353/570 (61%), Gaps = 11/570 (1%)
Query: 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS-DKKEMKEKM 120
L +L L+ + L A L +SS M +PF G+VID + + +
Sbjct: 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAI 204
Query: 121 TSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL 180
+ LL + V R N + I ++RE LF S++ Q+ +FD++KTGEL
Sbjct: 205 FFMCLLSIASSVSAGL----RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGEL 260
Query: 181 INRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240
+R+S+DT +S+ ++ N++ LR+ VM+ + M +S +L +++LI +P V V
Sbjct: 261 TSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKV 320
Query: 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300
+GK + ++ +Q+ +A A QVAEE +S +RTV+SF+ E+ E S F +++ +L K++
Sbjct: 321 FGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380
Query: 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
ALA + T + G I + VLYYGG +V ++ GNL SFLLY +G ++ LS
Sbjct: 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYV 440
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILND 420
YS + + +GA +++E ++R+P I +G + L+G I+F ++ FSYP+RPD +L
Sbjct: 441 YSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLN-LEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
L+ + G + +++G SGSGKST+A LL LY P G++L+DGV + + D YL Q+
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 481 VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540
V QEP LFSG++ ENI YG+ D+ +I+ AAK ANA+ F+++F NG+DT VGE+G
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDT---PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616
Query: 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
LSGGQKQRIAIARAL++K ++L+LDEATSALDAE E L+Q + + +TVL IAHRL
Sbjct: 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAHRL 674
Query: 601 STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
ST+ +++QI VL KG +VE+G++ L+++
Sbjct: 675 STVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 493 bits (1270), Expect = e-168
Identities = 219/577 (37%), Positives = 359/577 (62%), Gaps = 8/577 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
L L+ + + ++ A+ LL++++ T+++P+A+ +ID ++ D + +
Sbjct: 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL---LNRYFA 62
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
L++V +V A R YL+ + + +R +F +IS ++FDK+++GE+++R++
Sbjct: 63 FLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLT 122
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
DT+L+ + ++S LR+ +M G+ MMFI S KL + L+ VP V +++G+ V
Sbjct: 123 TDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
RK++R QD++A+A A E + IRTV++F E E S F ++ +E A++ +
Sbjct: 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ + I+ VL+ G V ++ G L F+ YA + SIG LS + EL
Sbjct: 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQ 302
Query: 366 KGLGACHRLWEIMEREPLIST-SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
+ GA RL E+++ EP I + K L+GEI+F + F+YP+RPD L+ L+L
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLT 362
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484
++ G +++G SG+GKSTL LLLR YDPQ+G+IL+DGVD+++LDP LR+++ V Q+
Sbjct: 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544
P LF+ ++ ENI YG D+ T ++ AA+ A+A+ F+ G+DT +GERG+ LSG
Sbjct: 423 PVLFAASVMENIRYGRPDA---TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479
Query: 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604
GQ+QRIAIARA++K + ILLLDEATSALDAE+E LVQ A+E L++G+T L IAHRL+T+
Sbjct: 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL 539
Query: 605 KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
K+++I V+D+G+IV G++A LI ++ +L + Q
Sbjct: 540 KADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 476 bits (1226), Expect = e-162
Identities = 217/580 (37%), Positives = 339/580 (58%), Gaps = 15/580 (2%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS 122
S L++L K + L A+ LLL+S+ +++ +P +G++ID + ++
Sbjct: 1 LSLLRRLLKYLKY--KLLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLE 53
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
L LLL+L+ ++G + YL + Q I LR LF ++ ++FDK K+G+LI+
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYG 242
R++ D VS V+ + S +++ + ++F +S +LALI L+I+P +A + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+ RK++R V++ L E +S IR +K+F E E+ F ++L + +
Sbjct: 174 RKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
+ + L + + VL GG +V ++TVG L++F+LY + I L S
Sbjct: 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L + A RL+E+++ EP + G I+F N+ FSYP +L D+S
Sbjct: 294 LLQRASAAAERLFELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYP--GKKPVLKDIS 349
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
I+ G +++G SGSGKSTL LLLRLYDP +G+ILIDG+DI+++ LR +IG VS
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
Q+P LFSGTI ENI G D T +I A K ANA+ F+ + +G+DTIVGERG+ L
Sbjct: 410 QDPLLFSGTIRENIALGRPD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQ+QR+AIARAL++ IL+LDEATSALD E E L+Q A++KL++G+T L IAHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
I+ +++I VLD G+IVE G++ L+ ++ +L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 391 bits (1008), Expect = e-127
Identities = 197/589 (33%), Positives = 308/589 (52%), Gaps = 13/589 (2%)
Query: 41 EKIISRYY-TSTPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPF 99
EK+ + P + I L L +R L + L+ + +A P
Sbjct: 116 EKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPL 175
Query: 100 ALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRER 159
VID + + +T L++ L+L + A R YL+ + + +L R
Sbjct: 176 FSQIVIDKV---LPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232
Query: 160 LFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFII 219
F ++ +YF+K GE+I+R+ + + + +T +I + + +++MF+
Sbjct: 233 FFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291
Query: 220 SSKLALISLIIVPPVAGLAIVYGKFVRKITRN--VQDKLANAVQVAEERISNIRTVKSFS 277
S KL LI L +P + +++ +R+ TR + + V E I I TVK+ +
Sbjct: 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV--ETIKGIETVKALA 349
Query: 278 QEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITV 337
E S ++ ++ + K + L + +L++G ++V +T+
Sbjct: 350 AEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTL 409
Query: 338 GNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLK 397
G L +F + A Y I LS +++ + A RL +I++ P L+
Sbjct: 410 GQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQ 469
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
GEI+F N+ F Y V L DLSL+I G +++G SGSGKSTL LLL LY PQ G
Sbjct: 470 GEIEFENVSFRYGPDDPPV-LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+IL+DGVD+ ++D LR Q+G V Q+P LFSG+I ENI G + T +II AA+
Sbjct: 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG---NPEATDEEIIEAAQL 585
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + G+DT VGE G LSGGQ+QR+A+ARAL+ K KILLLDEATSALD E E
Sbjct: 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETE 645
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
++ + ++++G+TV+ IAHRLSTIR +++I VLD+GKIVE GS+ L
Sbjct: 646 AIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-123
Identities = 179/561 (31%), Positives = 308/561 (54%), Gaps = 8/561 (1%)
Query: 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLL 126
++L++ + K L A +++ ++ + ++ + + + L+
Sbjct: 3 RRLWSYVRPYKAGLVLAGVAMILVAA---TESTLAALLKPLLDDGFGGRDRSVLWWVPLV 59
Query: 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISA 186
++ + V+ C+F YL++ + + + +R R+F ++ ++FD+ TG L++RI+
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITF 119
Query: 187 DTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVR 246
D+ V+ T +R T+ V ++ S +L LI ++++P ++ L K +R
Sbjct: 120 DSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179
Query: 247 KITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306
+I++ +Q+ + VAEE + R VK F + E F+A + LA K A +
Sbjct: 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239
Query: 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366
T L + + VL+ ++T G+ ++F+ + + L+N + + +
Sbjct: 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQR 299
Query: 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQ 426
GL A L+ +++ P T G +G+++F N+ F YP R D L+ +SL I+
Sbjct: 300 GLAAAESLFTLLDSPPEKDT--GTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIE 356
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G +++G SGSGKSTL L+ R Y+P +G+IL+DG D+ + LR Q+ VSQ+
Sbjct: 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
LF+ TI NI YG + +++I A A A FV G DT +GE G++LSGGQ
Sbjct: 417 LFNDTIANNIAYG--RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606
+QR+AIARAL+K + IL+LDEATSALD E+E LVQ+A+E+L++G+T L IAHRLSTI K+
Sbjct: 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA 534
Query: 607 NQICVLDKGKIVEIGSYAHLI 627
++I V+D G+IVE G++ L+
Sbjct: 535 DRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-121
Identities = 135/242 (55%), Positives = 176/242 (72%), Gaps = 4/242 (1%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ F YPSRPD IL LSL I G +++GSSG GKST+ LL R YDP +G+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
L+DGVDI++L+ +LRSQIG VSQEP LF GTI ENI YG D T ++ AAK+AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD---ATDEEVEEAAKKAN 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ F++ +G+DT+VGERG LSGGQKQRIAIARAL++ KILLLDEATSALDAE+E L
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A+++ ++G+T + IAHRLSTIR ++ I VL G++VE G++ L+ + KL+K
Sbjct: 178 VQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGV-YAKLVK 236
Query: 640 YQ 641
Q
Sbjct: 237 AQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-107
Identities = 181/527 (34%), Positives = 300/527 (56%), Gaps = 22/527 (4%)
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
+ L+++ + ++ +F Y ++ + + +R RLFG ++ ++FDK TG L++
Sbjct: 67 MPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVS------MMFIISSKLALISLIIVPPVAG 236
RI+ D+ V+ + S G TV V G S MMF S +L+LI ++I P V+
Sbjct: 127 RITYDSEQVA-----SSSSGALITV-VREGASIIGLFIMMFYYSWQLSLILIVIAPIVSI 180
Query: 237 LAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFEL 296
V K R I++N+Q+ + AE+ + + V F +++E F+ + + +
Sbjct: 181 AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQ 240
Query: 297 AKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGI--SI 354
K A + L + + VLY +T+T G ++ +++++ I + +
Sbjct: 241 GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTIT--VVFSSMIALMRPL 298
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPD 414
L+N ++ +G+ AC L+ I++ E GK KG+I+F N+ F+YP + +
Sbjct: 299 KSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKRVIERAKGDIEFRNVTFTYPGK-E 355
Query: 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474
L +++ KI +G +++G SGSGKST+A LL R YD G+IL+DG D+++ L
Sbjct: 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
R+Q+ VSQ LF+ TI NI Y + S + I AA+ A A F+ NG DT+
Sbjct: 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYS--REQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+GE G++LSGGQ+QRIAIARAL++ S IL+LDEATSALD E+E +Q+A+++L + +T L
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533
Query: 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
IAHRLSTI K+++I V++ G+IVE G++A L+ N ++ +L K Q
Sbjct: 534 VIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 306 bits (787), Expect = e-101
Identities = 115/229 (50%), Positives = 161/229 (70%), Gaps = 4/229 (1%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++F N+ F YP V L D+SL I +G +++G SGSGKSTL L+ R YD +G+I
Sbjct: 1 VEFKNVTFRYPGDGPPV-LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
LIDG D+++ LR QIG VSQ+ LF+ T+ ENI YG T+ ++ AA+ AN
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAAN 116
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A+ F+++ G+DT++GERG+ LSGGQ+QRIAIARAL+K IL+LDEATSALD E+E L
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
VQ+A+E+L++ +T IAHRLSTI +++I VL+ GKIVE G++ L+
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = 7e-97
Identities = 181/553 (32%), Positives = 283/553 (51%), Gaps = 48/553 (8%)
Query: 112 DKKEMKEKMTSLSLLL--MLVFVVGACCNFG-RVYLMNVSAQSITKKLRERLFGSIISQE 168
DK + +++LS+L ML + G R YL I +L RL+ ++
Sbjct: 167 DKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226
Query: 169 TAYFDKHKTGELINRI------------SADTSLVSQCVTQNISDGLRSTVMVSAGVSMM 216
YF+ + G+ + R+ SA T ++ D L V ++ M
Sbjct: 227 LGYFESRRVGDTVARVRELEQIRNFLTGSALTVVL---------DLLFVVVFLAV----M 273
Query: 217 FIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSF 276
F S L + + + A L++ G +RK + ++ A A E ++ I T+K+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKAT 333
Query: 277 SQEKLEMSHFNAKMDDLFELAKKEALAKGVF-FGFTGLSGNAII-----LSVLYYGGVMV 330
+ E F + D +LA A + V G +I +L++G +V
Sbjct: 334 ATE----PQFQNRWDR--QLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387
Query: 331 SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK 390
++ G L +F + A + + L+ + + + A RL +I+ P S G
Sbjct: 388 IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN-SPTEPRSAGL 446
Query: 391 FFSHSLKGEIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449
L+G I F NIRF Y PD+ +L++L+L I+ G ++G SGSGKSTL LL
Sbjct: 447 AALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ 504
Query: 450 RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509
RLY PQ+G++L+DGVD+ DP +LR Q+G V QE LFS +I +NI N +
Sbjct: 505 RLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC-NPGAPFEH- 562
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+IHAAK A A+ F+ + G++T VGE+G LSGGQ+QRIAIARAL+ +IL+ DEAT
Sbjct: 563 -VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
SALD E+E L+ + ++ G+TV+ IAHRLST+R ++I VL+KG+I E G + L+
Sbjct: 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
Query: 630 PNSMFNKLMKYQT 642
++ +L + Q+
Sbjct: 682 Q-GLYARLWQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-92
Identities = 114/243 (46%), Positives = 159/243 (65%), Gaps = 8/243 (3%)
Query: 400 IDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+F N+ F+Y P RP +L D+S I +G +++G SGSGKST+ LL R YD +G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
ILIDG DI+E+ LR IG V Q+ LF+ TI NI YG T ++I AAK A
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYG---RPDATDEEVIEAAKAA 114
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++ F +G+DTIVGERG+ LSGG+KQR+AIARA++K ILLLDEATSALD E
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+Q+A+ + +G+T + IAHRLSTI +++I VL G+IVE G++ L+ ++ ++
Sbjct: 175 EIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMW 233
Query: 639 KYQ 641
K Q
Sbjct: 234 KAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 4e-89
Identities = 113/231 (48%), Positives = 164/231 (70%), Gaps = 5/231 (2%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
GEI+F N+ FSY +L D++ I+ G +++G +G+GK+TL LL+R YDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ILIDG+DI+++ LRS IG V Q+ LFSGTI ENI G ++ T ++I AAKE
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA---TDEEVIEAAKE 115
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F++ NG+DT++GE G LS G++Q +AIARA+++ KIL+LDEATS +D E E
Sbjct: 116 AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
L+Q A+EKL++G+T + IAHRLSTI+ +++I VLD GKI+E G++ L+
Sbjct: 176 KLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 3e-82
Identities = 109/222 (49%), Positives = 158/222 (71%), Gaps = 3/222 (1%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
LKG + F N+ F+YP+RPD ++L D+S + G +T+++G SGSGKST+ LL Y PQ
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
G++L+DG I + + YL S++ V QEP LF+ ++ +NI YG+ S + + AA
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL---QSCSFECVKEAA 124
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++A+A+ F+ + +G+DT VGE+G LSGGQKQR+AIARALI+ ++L+LDEATSALDAE
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+E VQ A+ E +TVL IAHRLST+ +++QI VLD G+I
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 9e-82
Identities = 159/534 (29%), Positives = 257/534 (48%), Gaps = 39/534 (7%)
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+LL++ V+ A + R L +A + LR+ + + A+ + G
Sbjct: 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAA--- 100
Query: 185 SADTSLVSQCVTQNISDGLR-------STVMVSAGVSMMFII-----SSKLALISLIIVP 232
+ I + L + +SA V ++ +I + ALI LI P
Sbjct: 101 --------TLALEGI-EQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAP 151
Query: 233 PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDD 292
+ I+ G + + LA +R+ + T+++F + + +D
Sbjct: 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSED 211
Query: 293 L----FELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAA 348
+ + L+ V F LS I L +Y G ++ +T+ L+ A
Sbjct: 212 FRKATMSVLRIAFLSSAVLEFFAYLS---IALVAVYIGFRLLGEGDLTLFAGLFVLILAP 268
Query: 349 YIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKF-FSHSLKGEIDFNNIRF 407
+ L +F+ G A +L+ ++E SG K ++ EI N+ F
Sbjct: 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSF 328
Query: 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
YP A L+DL+L I++G +T+++G+SG+GKSTL LLL P G+I ++G+D++
Sbjct: 329 RYPDGKPA--LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+L P R QI VSQ P LF+GTI ENIL D+S +II A +A FV
Sbjct: 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS---DEEIIAALDQAGLLEFVPKP 443
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
G DT++GE G LSGGQ QR+A+ARAL+ + +LLLDE T+ LDAE E ++ A+++L
Sbjct: 444 D-GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 588 IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
+ KTVL I HRL +++I VLD G++VE G++ L + ++ L+K Q
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 5e-81
Identities = 106/217 (48%), Positives = 131/217 (60%), Gaps = 46/217 (21%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ FSYP RP V L D+SL I+ G +++G SGSGKSTL LLLRLYDP +G+I
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
LIDGVD+++LD LR I V Q+P LFSGTI ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
LSGGQ+QRIAIARAL++ IL+LDEATSALD E E L
Sbjct: 97 ----------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
+ A+ L +GKTV+ IAHRLSTIR +++I VLD G+
Sbjct: 135 ILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 2e-80
Identities = 178/621 (28%), Positives = 299/621 (48%), Gaps = 108/621 (17%)
Query: 71 TLAKSEKRKLTGAVCLL-LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLML 129
+EKR L + + ++ ++ T A P G++ID I S K ++ L+
Sbjct: 12 QYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAI--SGKGDI--------FPLLA 60
Query: 130 VFVVGACCNFGRVYLMNVSAQSITKKLRERL------------FGSIISQETAYFDKHKT 177
+ FG L N+ A + + +RL F II A+ + +
Sbjct: 61 AWAG-----FG---LFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGS 112
Query: 178 GELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVA-- 235
G ++ +D L G+ + F+ L++L+++ P+A
Sbjct: 113 GRALH------------TLLRGTDAL-------FGLWLEFMREHLATLVALVVLLPLALF 153
Query: 236 ----------GLAIVY---GKFVRKITRNVQDKL----ANAVQVAEERISNIRTVKSFSQ 278
L IVY V + T++ Q + + + I N+ V+S+++
Sbjct: 154 MNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNR 213
Query: 279 EKLEMSHFNAKMDDLFELAKKE------ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSY 332
+ E D+L LA + ALA + + +L++L G +V
Sbjct: 214 IEAETQALRDIADNL--LAAQMPVLSWWALASVL----NRAASTITMLAILVLGAALVQK 267
Query: 333 ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE----------IMEREP 382
+ VG + +F+ +A + IG L + +N+ A +L E + +
Sbjct: 268 GQLRVGEVVAFVGFATLL---IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG 324
Query: 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKS 442
I +KG ++F+++ FSY + V D+S + + G +++G +G+GKS
Sbjct: 325 AIDLGR-------VKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIVGPTGAGKS 375
Query: 443 TLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502
TL LL R++DPQ+G+ILIDG DI+ + LR I V Q+ LF+ +I +NI G D
Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435
Query: 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ T ++ AA+ A A+ F+ +G+DT+VGERG LSGG++QR+AIARAL+K I
Sbjct: 436 A---TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
L+LDEATSALD E E V++A+++L++G+T IAHRLST+R +++I V D G++VE GS
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552
Query: 623 YAHLIKNPNSMFNKLMKYQTM 643
+ L+ F L++ Q M
Sbjct: 553 FDELVAR-GGRFAALLRAQGM 572
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 4e-80
Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 7/243 (2%)
Query: 400 IDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I F ++RF Y +PD VIL+++SL+I+ G + ++G SGSGKSTL L+ R Y P+NG+
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+L+DG D+ DP +LR Q+G V QE LF+ +I +NI + S+ + +I AAK A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-DPGMSMER--VIEAAKLA 115
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A+ F+ + G+DTIVGE+G LSGGQ+QRIAIARALI +IL+ DEATSALD E+E+
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+ + + G+TV+ IAHRLST++ +++I V++KG+IVE GS+ L+ N ++ L
Sbjct: 176 AIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234
Query: 639 KYQ 641
+ Q
Sbjct: 235 QLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 6e-80
Identities = 144/447 (32%), Positives = 227/447 (50%), Gaps = 21/447 (4%)
Query: 196 TQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLA--IVYGKFVRKITR--- 250
T+ I LR + + + + + + L I+Y F ++
Sbjct: 49 TKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRT 108
Query: 251 ------NVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
N D ANA + + + N TVK F E+ E ++ ++ + A K ++
Sbjct: 109 DFRRLMNNADSDANAKAI--DSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166
Query: 305 GVF-FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
V FG T + + + ++ + V +TVG+L + + I + L Y E
Sbjct: 167 LVLNFGQTAIFSTGLRV-MMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYRE 225
Query: 364 LNKGLGACHRLWEIMEREPLISTS-GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
+ + L +++++++ E +S + G + F N+ F+Y P ILN +S
Sbjct: 226 IRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAY--DPRRPILNGIS 283
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
I G +++G SG+GKST+ LL R YD +G I IDG DI+++ LR IG V
Sbjct: 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
Q+ LF+ TI NI YG D T ++ AA+ A + F+ G+DT VGERG+ L
Sbjct: 344 QDTVLFNDTIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGG+KQR+AIAR ++K IL+LDEATSALD E +Q+A+ ++ G+T L IAHRLST
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST 460
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKN 629
I +++I VLD G+IVE G++ L+
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLAA 487
|
Length = 497 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 8e-77
Identities = 135/419 (32%), Positives = 220/419 (52%), Gaps = 30/419 (7%)
Query: 213 VSMMFIISSKLALISLIIVPPVAGLAIVYGKFV-RKITRNVQDKLANAVQ---VAEERIS 268
+ ++ II L + L+ +P L ++ G + R ++R ++ + + Q V E +S
Sbjct: 277 LLVIAIIGGPLVWVPLVAIP----LILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLS 332
Query: 269 NIRTVKSFSQEKLEMSHFNAKMDDLF-ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGG 327
+ T+K+ + E F + + LA+ ++ + T + L +
Sbjct: 333 GLETIKALNAE----GRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSV---A 385
Query: 328 VMV--SYETITVGNLSSFLLYAAYIGIS-----IGGLSNFYSELNKGLGACHRLWEIMER 380
++V Y I+ G L+ L A + +G L+ + + A L E+M+
Sbjct: 386 IVVVGVYL-ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQL 444
Query: 381 EPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439
P+ G +F L+GEI+F N+ F+YP + L+++SL I+ G ++IG GS
Sbjct: 445 -PVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA-LDNVSLTIRPGEKVAIIGRIGS 502
Query: 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499
GKSTL LLL LY P G +L+DGVDI+++DP LR IG V Q+P LF GT+ +NI G
Sbjct: 503 GKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG 562
Query: 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559
+I+ AA+ A FV +G D +GERG LSGGQ+Q +A+ARAL++
Sbjct: 563 A---PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
ILLLDE TSA+D +E + +++ + GKT++ + HR S + ++I V+D G+IV
Sbjct: 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 3e-74
Identities = 173/585 (29%), Positives = 310/585 (52%), Gaps = 25/585 (4%)
Query: 52 PNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS 111
P + K K++ L K L +K+ + V ++ + I++A + L K+ID Y
Sbjct: 130 PTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIID-TYIP 188
Query: 112 DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAY 171
K M + +S+ L++ +++ ++ +++L+NV Q ++ + + ++
Sbjct: 189 HK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSF 246
Query: 172 FDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231
F +TGE+++R + +S++ + +S L ++V G+ ++ + L L+SL+ +
Sbjct: 247 FSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQ-NMLLFLLSLLSI 305
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAE--ERISNIRTVKSFSQEKLEMSHFNAK 289
P A + I++ + K+ + ANAV + E ++ I T+KS + E S K
Sbjct: 306 PVYAVIIILFKRTFNKLNHDAMQ--ANAVLNSSIIEDLNGIETIKSLTSEAERYS----K 359
Query: 290 MDDLFE--LAKKEALAKGVFFGFTGLSGNAIILSV--LYYGGVMVSYETITVGNLSSFLL 345
+D F L K K + +IL+V L+ G +V +T+G L +F
Sbjct: 360 IDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNA 419
Query: 346 YAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNI 405
+Y + + N +L A +RL E+ + + ++L G+I N++
Sbjct: 420 LLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDV 479
Query: 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
+SY + IL+D+SL I+ S T+++G SGSGKSTLA LL+ + ++G+IL++G
Sbjct: 480 SYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 466 IKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
+K++D LR I + QEP +FSG+I EN+L G + +V++ +I A + A +
Sbjct: 538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE--NVSQDEIWAACEIAEIKDDIE 595
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ G+ T + E G +SGGQKQRIA+ARAL+ SK+L+LDE+TS LD E + +
Sbjct: 596 NMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVN 652
Query: 586 KL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
L ++ KT++ +AHRLS ++S++I VLD GKI+E GS+ L+
Sbjct: 653 NLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-73
Identities = 161/555 (29%), Positives = 292/555 (52%), Gaps = 23/555 (4%)
Query: 84 VCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143
V LL++ + + + P +G ++D + T + + + ++++ VV RV
Sbjct: 1 VALLIIIAMLQLIPPKVVGIIVDGV-TEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVL 59
Query: 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGL 203
L S Q + +LRE + + Q ++ +H+TG+L+ R + D V + + +
Sbjct: 60 LFGASYQ-LAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118
Query: 204 RSTVMVSAGVSMMFI-ISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
S VM A + +M IS +L L++L+ +P +A + YG + + + Q ++
Sbjct: 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDR 178
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDL----FELAKKEALAKGVFFGFTGLSGNAI 318
+E +++IR +K+F E + + F A +D +A+ +A + G++
Sbjct: 179 TQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMAN--- 235
Query: 319 ILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIG---GLSNFYSELNKGLGACHRLW 375
L + G MV ++T+G L+SF++Y +G+ I L+ ++ + +G A R+
Sbjct: 236 -LLAIGGGSWMVVNGSLTLGQLTSFVMY---LGLMIWPMLALAWMFNIVERGSAAYSRIR 291
Query: 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIG 435
++ P++ G + +GE+D N +F+YP D L +++ ++ G M + G
Sbjct: 292 AMLAEAPVV-KDGSEPVPEG-RGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICG 348
Query: 436 SSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495
+GSGKSTL L+ R +D G I + + +L RS++ VSQ P LFS T+ N
Sbjct: 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408
Query: 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555
I G D+ T+ +I H A+ A+ + ++ G+DT VGERG+MLSGGQKQRI+IARA
Sbjct: 409 IALGRPDA---TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465
Query: 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615
L+ ++IL+LD+A SA+D E+ + + + EG+TV+ AHRLS + ++++I V+ G
Sbjct: 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525
Query: 616 KIVEIGSYAHLIKNP 630
I + G++ L +
Sbjct: 526 HIAQRGNHDQLAQQS 540
|
Length = 569 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 1e-72
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G I+F N+ FSYP++ L+++SL I++G ++IG GSGKSTL LL LY P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+L+DG DI++LDP LR IG V Q+ TLF GT+ +NI G + I+ AA+
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG---APLADDERILRAAEL 116
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A FV NG D +GERG LSGGQ+Q +A+ARAL+ ILLLDE TSA+D +E
Sbjct: 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
++ + +L+ KT++ I HR S + ++I V+D G+IV
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 3e-72
Identities = 175/591 (29%), Positives = 280/591 (47%), Gaps = 88/591 (14%)
Query: 88 LVSSSITMAVPFALGKVID-VIYTSDKKEMKEKMTSLSLLLMLVFVVGACC--------- 137
L+ + + M VP A G +I I +D+ SLL+ + + A
Sbjct: 146 LLGTLLGMLVPIATGILIGTAIPDADR----------SLLVQIALALLAAAVGAAAFQLA 195
Query: 138 -NFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVT 196
+ + L S+ + +RL ++F ++ TG+L +R +SQ +
Sbjct: 196 QSLAVLRLETRMDASLQAAVWDRLL----RLPVSFFRQYSTGDLASRAMG----ISQ-IR 246
Query: 197 QNISD-GLRS--TVMVSA-GVSMMFIISSKLALISLIIVPPVAGLAIVYGKF-VRKITR- 250
+ +S L + + + + + +MF S KLAL+++ + + +V G VRK R
Sbjct: 247 RILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRL 306
Query: 251 -NVQDKLAN-AVQVAEERISNIRTV-----------KSFSQE-KLEMSHFNAKMDDLFEL 296
+ K++ VQ+ IS +R K FS++ KLE+S ++++L +
Sbjct: 307 LELSGKISGLTVQLING-ISKLRVAGAENRAFARWAKLFSRQRKLELS--AQRIENLLTV 363
Query: 297 AKK--EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI 354
L F LS+ G +++ T SF ++
Sbjct: 364 FNAVLPVLTSAALFAAAISLLGGAGLSL----GSFLAFNTA----FGSFSG-------AV 408
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPD 414
LSN + + R I+E P K L G I+ + + F Y RPD
Sbjct: 409 TQLSNTLISILAVIPLWERAKPILEALP--EVDEAKTDPGKLSGAIEVDRVTFRY--RPD 464
Query: 415 A-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+IL+D+SL+I+ G +++G SGSGKSTL LLL P++G + DG D+ LD
Sbjct: 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN---G 530
+R Q+G V Q L SG+I+ENI G +T + AA+ A G D + G
Sbjct: 525 VRRQLGVVLQNGRLMSGSIFENIAGGA----PLTLDEAWEAARMA---GLAEDIRAMPMG 577
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
T++ E G LSGGQ+QR+ IARAL++K +ILL DEATSALD + +V ++E+L
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--K 635
Query: 591 KTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
T + IAHRLSTIR +++I VLD G++V+ G+Y L+ +F +L + Q
Sbjct: 636 VTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM-AREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-71
Identities = 97/226 (42%), Positives = 138/226 (61%), Gaps = 7/226 (3%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G+I+F N+ Y V L ++S I+ G ++G +GSGKS+L + L RL + +G
Sbjct: 1 GDIEFKNVSLRYRPNLPPV-LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS-SSVTKSDIIHAAK 516
ILIDGVDI ++ LRS+I + Q+P LFSGTI N+ D + ++ A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL-----DPFGEYSDEELWQALE 114
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
FV G DT+V E G LS GQ+Q + +ARAL++KSKIL+LDEAT+++D E
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
+ L+Q I + + TVLTIAHRL TI S++I VLDKG++VE S
Sbjct: 175 DALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 9e-70
Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 43/509 (8%)
Query: 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRS---TV 207
+ LR RLF + A ++++G+L+NR+ AD D L + V
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADV------------DALDNLYLRV 135
Query: 208 MVSAGVSMMFIISSKLALISLIIVPPVAGLAI-----------VYGKFVRKITRNVQDKL 256
+ A V+++ I + L S +P L + ++ + RK ++
Sbjct: 136 IAPAVVALVLIAVVTIGL-SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGR 194
Query: 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGN 316
A + + + F E + A + +K+A G+ L
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAG 254
Query: 317 AIILSVLYYGGVMV-----SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGAC 371
+++ +L + V + + L F A+ ++ G L + + +
Sbjct: 255 LLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQ----HLGQVIASA 310
Query: 372 HRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMT 431
RL +I++++P ++ + + ++ N+ F+YP + L + +L + G
Sbjct: 311 RRLNDILDQKPEVTFPDEQT--ATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKV 367
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT 491
+++G SGSGKSTL LL +DPQ G I ++GV+I LD LR I ++Q LFSGT
Sbjct: 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+ +N+ D+S + + +G +T +GE G LSGG+++R+A
Sbjct: 428 LRDNLRLANPDASDEELWAALQQVGLEK---LLESAPDGLNTWLGEGGRRLSGGERRRLA 484
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV 611
+ARAL+ + + LLDE T LD E V + + + EGKT+L + HRL + + ++I V
Sbjct: 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIV 544
Query: 612 LDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640
LD GKI+E G++A L+ N N + +L +
Sbjct: 545 LDNGKIIEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-69
Identities = 174/582 (29%), Positives = 295/582 (50%), Gaps = 59/582 (10%)
Query: 82 GAVCLL-LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFG 140
+ + + ++IT+A P G++ID I S K + +L L F V F
Sbjct: 22 LLIVIANITLAAITIAEPILFGRIIDAI--SSKSD-----VLPTLALWAGFGV-----FN 69
Query: 141 RVYLMNVS------AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQC 194
+ + V+ A L FG IIS ++ + T ++ +L+
Sbjct: 70 TIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALH------TLLRAT 123
Query: 195 VTQNISDGLRSTVM---VSAGVSMMFIISSKLAL---ISLIIVPPVAGLAIVY---GKFV 245
T GL M ++ V++ +I + A+ +S++++ L I+Y K V
Sbjct: 124 ETLF---GLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM----VLGILYILIAKLV 176
Query: 246 RKITRN----VQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+ T+N V+ N + + ISN+ V S+++ + E S ++L A+
Sbjct: 177 MQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLS-AQYPV 235
Query: 302 LAKGVFF-GFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
L G ++ ++ +L G V+V ++VG + +F+ +A + IG L
Sbjct: 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLL---IGRLDQM 292
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSL---KGEIDFNNIRFSYPSRPDAVI 417
+ + A +L + + E + + L KG ++F +I F + + V
Sbjct: 293 SGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV- 351
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
D+S + ++G +++G +G+GK+TL LL R+YDP G+ILIDG+DI + LR
Sbjct: 352 -FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGE 537
I +V Q+ LF+ +I ENI G + T ++ AAK A A+ F++ NG+DT+VGE
Sbjct: 411 IATVFQDAGLFNRSIRENIRLGREGA---TDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467
Query: 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIA 597
RG LSGG++QR+AIARA++K + IL+LDEATSALD E E V++AI+ L + +T IA
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 598 HRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
HRLST+R ++ + LD+G+++E GS+ LI + F KL++
Sbjct: 528 HRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-69
Identities = 159/585 (27%), Positives = 292/585 (49%), Gaps = 56/585 (9%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS-LS 124
LK+L ++ L AV +L V+++ ++ P + ID + K + + + L+
Sbjct: 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVA--KGNLPLGLVAGLA 68
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+ + ++ A ++ + L N +A + ++LR + + + Q + FD G+LI+R+
Sbjct: 69 AAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRV 128
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
+ DT ++ ++ LRS ++ A + MF + ++AL++++I P V + ++Y ++
Sbjct: 129 TNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQ-----EKLEM---SHFNAKMDDLFEL 296
I R V+ LA+ E I+ + ++ F Q E++ SH+ A+M
Sbjct: 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARM------ 242
Query: 297 AKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSY-----ETITVGNLSSFLLYAAYIG 351
+ L F LS + S L G+++ + TI VG L +F+ Y +
Sbjct: 243 ---QTLRLDGFLLRPLLS----LFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLN 295
Query: 352 ISIGGLSNFYSELNKGLGACHRLWEIMER---------EPLISTSGGKFFSHSLKGEIDF 402
+ L+ S L + + A R++E+M+ PL S G ID
Sbjct: 296 EPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQS------------GRIDI 343
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+N+ F+Y R D ++L +++L + S +++G +GSGKSTLA LL+ Y G+I +D
Sbjct: 344 DNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G + L LR + V Q+P + + T N+ G + +++ + A +
Sbjct: 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD----ISEEQVWQALETVQLAE 457
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+G T +GE+G LS GQKQ +A+AR L++ +IL+LDEAT+ +D+ E +Q
Sbjct: 458 LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627
A+ + E T++ IAHRLSTI +++ I VL +G+ VE G++ L+
Sbjct: 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 2e-66
Identities = 141/546 (25%), Positives = 244/546 (44%), Gaps = 28/546 (5%)
Query: 77 KRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGAC 136
+R L L ++ + + +A + L +V+D + S + + E + +L L +++ +
Sbjct: 2 RRALALLALLGVLGALLIIAQAWLLARVVDGLI-SAGEPLAELLPALGALALVLLLRALL 60
Query: 137 CNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL----INRISADTSLVS 192
+A ++ +LRERL ++ + + +GEL + + A +
Sbjct: 61 GWLQERAAARAAA-AVKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEALDGYFA 119
Query: 193 QCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNV 252
+ + Q + + + + A V IS LI L+ P + I+ G + R
Sbjct: 120 RYLPQLVLAVI-VPLAILAAVFPQDWIS---GLILLLTAPLIPIFMILIGWAAQAAARKQ 175
Query: 253 QDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDL----FELAKKEALAKGV-- 306
L+ +R+ + T+K F + K + + ++ + + L+ V
Sbjct: 176 WAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVLE 235
Query: 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366
F ++ A+ + G + + V LL A + + L Y
Sbjct: 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFV------LLLAPEFYLPLRQLGAQYHARAD 289
Query: 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQ 426
G+ A L+ +++ P + ++F+ + +YP R A L +S +
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAPVTAAPAP-SLEFSGVSVAYPGRRPA--LRPVSFTVP 346
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G +++G SG+GKSTL LLL DP G I ++GV + + D R QI V Q P
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
LF+GTI ENI D + ++I A + A FV G DT +GE G LSGGQ
Sbjct: 407 LFAGTIAENIRLARPD---ASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQ 463
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606
QR+A+ARA ++ + +LLLDE T+ LDAE E V A+ L +G+TVL + HRL+ +
Sbjct: 464 AQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALA 523
Query: 607 NQICVL 612
++I VL
Sbjct: 524 DRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 1e-64
Identities = 140/487 (28%), Positives = 243/487 (49%), Gaps = 49/487 (10%)
Query: 171 YFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230
+F + G++ +R+ + V++ ++ ++ VM+ +M + L LI +
Sbjct: 244 FFAQRHAGDIASRVQLNDQ-VAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF 302
Query: 231 VPPVAGLAIVYGKFV-RKI---TRNVQDKLANAVQVAEERISNIRTVKS-------FSQE 279
A + ++ + V R+ R +Q VA + +I T+K+ FS+
Sbjct: 303 ----AAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSR- 357
Query: 280 KLEMSHFNAKM-DDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG 338
+ + AK+ + EL + + T L+ +A+IL V GG+ V +T+G
Sbjct: 358 ---WAGYQAKLLNAQQELGVLTQILGVLPTLLTSLN-SALILVV---GGLRVMEGQLTIG 410
Query: 339 NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIME--REPLISTSGGKFFSHS- 395
L +F + + L F L + G +RL +++ +PL+
Sbjct: 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470
Query: 396 ---LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
L G ++ NI F Y S + ++ + SL +Q G +++G SGSGKST+A L+ LY
Sbjct: 471 SPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529
Query: 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDI 511
P +G+IL DG+ +E+ L + + V Q+ LF GT+ +N+ L+ ++ +D+
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW----DPTIPDADL 585
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A K+A + + G+D + E G LSGGQ+QR+ IARAL++ IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS--------- 622
LD E E ++ + + G T + +AHRLSTIR ++I VL++GK+V+ G+
Sbjct: 646 LDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGG 703
Query: 623 -YAHLIK 628
YA LI+
Sbjct: 704 AYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-58
Identities = 92/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS 432
R+ EI E++P + T + + + + NN+ F+YP +P V L LSL+I++G +
Sbjct: 313 RINEITEQKPEV-TFPTTSTAAADQVSLTLNNVSFTYPDQPQPV-LKGLSLQIKAGEKVA 370
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
++G +G GKSTL LL R +DPQ G+IL++G I + LR I VSQ LFS T+
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
+N+L ++S + + + +++ G + +GE G LSGG+++R+ I
Sbjct: 431 RDNLLLAAPNASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGI 486
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
ARAL+ + +LLLDE T LDAE E + + + + KTVL I HRL+ + + ++ICV+
Sbjct: 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVM 546
Query: 613 DKGKIVEIGSYAHLIKN 629
D G+I+E G++ L+
Sbjct: 547 DNGQIIEQGTHQELLAQ 563
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 5e-57
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 6/275 (2%)
Query: 357 LSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416
L FY + +GA L +E G K + + I+ ++ P
Sbjct: 307 LGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKT 364
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+ L+ + +G +++G SG+GK++L LL + P G + I+G++++ELDP R
Sbjct: 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRK 423
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+ V Q P L GT+ +N+L G + + + A + A F+ G DT +G
Sbjct: 424 HLSWVGQNPQLPHGTLRDNVLLG---NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
++ LS GQ QR+A+ARAL++ ++LLLDE T++LDA +E LV A+ +T L +
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
H+L + + +QI V+ G+IV+ G YA L +
Sbjct: 541 THQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG 575
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 2e-53
Identities = 114/466 (24%), Positives = 206/466 (44%), Gaps = 42/466 (9%)
Query: 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214
LR R++ + Q A + + G+L+ R+ AD + + I + V+ +A V+
Sbjct: 87 ALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVA 146
Query: 215 MMFIISSKLALI-------SLIIVPPVAGLAIVYGKFVRKITRNVQ-------DKLANAV 260
+ ++S ALI + + P V+ A R + + +L +A+
Sbjct: 147 AIAVLSVPAALILAAGLLLAGFVAPLVSLRA------ARAAEQALARLRGELAAQLTDAL 200
Query: 261 QVAEERISNIRTVKSFSQEKLEMSHFNAKMDD----LFELAKKEALAKGVFFGFTGLSGN 316
A E +++ + A++++ L ++ A A + T L+
Sbjct: 201 DGAAELVASGA-----------LPAALAQVEEADRELTRAERRAAAATALGAALTLLAAG 249
Query: 317 AIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376
+L L+ GG V+ + L+ +L + L +L + A R+ E
Sbjct: 250 LAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVE 309
Query: 377 IMEREPLISTSGGKFFSHSLKGEID--FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434
+++ ++ G+ ++ YP +L+ +SL + G +++
Sbjct: 310 VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAIL 367
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494
G SGSGKSTL L L DP G++ +DGV + LD +R ++ +Q+ LF T+ E
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427
Query: 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
N+ D T ++ A + ++ +G DT++GE G LSGG++QR+A+AR
Sbjct: 428 NLRLARPD---ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
AL+ + ILLLDE T LDAE + + + G+TV+ I H L
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 9e-52
Identities = 76/215 (35%), Positives = 108/215 (50%), Gaps = 47/215 (21%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ F YP + +L ++S I+ G ++IG SGSGKSTLA L+L L P +G++ +DG
Sbjct: 5 NVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGF 523
DI + DP L +G + Q+ LFSG+I ENI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
LSGGQ+QR+ +ARAL +IL+LDE S LD E E + A
Sbjct: 97 ------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 584 IEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
I L G T + IAHR T+ +++I VL+ G++
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-50
Identities = 136/505 (26%), Positives = 246/505 (48%), Gaps = 40/505 (7%)
Query: 143 YLMNVSAQSI--TKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNIS 200
Y M VS I ++ L + L + + ++F++ +G L+NR S + V + I
Sbjct: 1025 YSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIK 1084
Query: 201 DGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAV 260
+ S V + + +I + ++II P L ++Y FV++ +L
Sbjct: 1085 MFMGSLFNV---IGALIVILLATPIAAVIIPP----LGLLY-FFVQRFYVASSRQLKRLE 1136
Query: 261 QVAE--------ERISNIRTVKSFSQEKLEMSHFNAKMDD-----LFELAKKEALAKGVF 307
V+ E + + +++F +++ + + K+D+ + LA +
Sbjct: 1137 SVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLE 1196
Query: 308 FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKG 367
GN I+L + ++S +++ G + + Y+ + + L SE+
Sbjct: 1197 C-----VGNCIVLFAALFA--VISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETN 1249
Query: 368 LGACHRLWEIMERE---PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA-VILNDLSL 423
+ A RL E E E P +G ++F N Y R D ++L +++
Sbjct: 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINV 1307
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
I G ++G +G+GKS+L + L R+ + G+I+IDG++I ++ LR +I + Q
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
+P LFSG++ N+ + S + ++ A + A+ FV + D E G LS
Sbjct: 1368 DPVLFSGSLRMNL----DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLS 1423
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GQ+Q + +ARAL++K+KIL+LDEAT+A+D E + L+QS I E TVLTIAHRL+TI
Sbjct: 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIK 628
++ VLDKG++ E G+ ++L++
Sbjct: 1484 MDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-50
Identities = 182/626 (29%), Positives = 283/626 (45%), Gaps = 107/626 (17%)
Query: 70 FTLAKSEKRKLTGA--VCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLL 127
F + RKL G VC + ++ PF + V VI + + E + + L
Sbjct: 51 FKCLPASHRKLLGVSFVCATISGGTL----PFFV-SVFGVIMKN--MNLGENVNDIIFSL 103
Query: 128 MLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISAD 187
+L+ + +F + M+V I K L+ S+ Q+ + D + +L ++D
Sbjct: 104 VLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKL----TSD 159
Query: 188 TSLVSQCVTQNISDGLRSTVMVSAGVSMMFIIS----SKLALISLIIVPPVAGLAIVYGK 243
+ V I + ++ ++I S ++L L + P + ++ K
Sbjct: 160 LDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNK 219
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFN--AKMDDLFELAKK-- 299
V+ + N + + EE + IRTV S+ EK + FN K+ + L
Sbjct: 220 KVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFM 279
Query: 300 EALAKGVFFGFTGLS-------GNAIILSVL--------YYGGVMVSYETITVGNL-SSF 343
E+L G+ GF S G II+S L ++GG ++S I +G L S F
Sbjct: 280 ESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVIS---ILLGVLISMF 336
Query: 344 LLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFN 403
+L I+ E K L A + L+EI+ R+PL+ + +K +I F
Sbjct: 337 MLTIILPNIT---------EYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFK 386
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-D 462
N+RF Y +R D I DL+ + G + +G SG GKST+ L+ RLYDP G I+I D
Sbjct: 387 NVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI---LYGVND----------------- 502
++K+++ + RS+IG VSQ+P LFS +I NI LY + D
Sbjct: 447 SHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506
Query: 503 -------------------SSSVTKSDIIHAAKEANA---------------YGFVIDFK 528
S++ +++I K + FV
Sbjct: 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ ++T+VG LSGGQKQRI+IARA+I+ KIL+LDEATS+LD ++EYLVQ I L
Sbjct: 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626
Query: 589 --EGKTVLTIAHRLSTIRKSNQICVL 612
E + + IAHRLSTIR +N I VL
Sbjct: 627 GNENRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-48
Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 25/226 (11%)
Query: 398 GEIDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
GEI+ N+ Y P P +L ++S K+++G ++G +G+GKSTL + L R + +
Sbjct: 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
GKI IDG+DI + LRS + + Q+PTLFSGTI N+ D + I+ A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL-----DPFDEYSDEEIYGAL 117
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
V E G+ LS GQ+Q + +ARAL+K+ ++L+LDEAT+++D
Sbjct: 118 R-----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
+ L+Q I + T+LTIAHRL TI ++I V+D G++ E
Sbjct: 161 DALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 78/268 (29%), Positives = 133/268 (49%), Gaps = 1/268 (0%)
Query: 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142
A+ LL+++ + + P LG+ +D + + + SL++LL+ V V+ G
Sbjct: 4 AILLLILAGATALVFPLLLGRFLDS-LIDGNGDERSSLISLAILLIAVGVLQGLLLQGSF 62
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
YL Q I K+L L I+ ++FD + GEL +R++ D S + + +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
+S V G +MF KL L+ L I+P + L+ V K +RK+ R Q A A V
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AEE +S IRTVK+F +E+ E+ ++ ++D + K+A+ G+ FG T L
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYI 350
L++G +V ++VG + +FL +
Sbjct: 243 LWFGAYLVISGGLSVGTVFAFLSLGLQL 270
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 5e-47
Identities = 112/345 (32%), Positives = 167/345 (48%), Gaps = 27/345 (7%)
Query: 286 FNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL--SSF 343
F++K A A G+ + + VL G + IT G + S
Sbjct: 209 FHSKYLSAQSAASDRA---GMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSI 265
Query: 344 LLYAAY--IGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSL---KG 398
L+ A I +IGG F + A RL E++ P + + L +G
Sbjct: 266 LVGRALAPIDGAIGGWKQF----SGARQAYKRLNELLANYPS------RDPAMPLPEPEG 315
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+ N+ P L +S +Q+G ++IG SGSGKSTLA L++ ++ P +G
Sbjct: 316 HLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL-YGVNDSSSVTKSDIIHAAKE 517
+ +DG D+K+ D IG + Q+ LF GT+ ENI +G N II AAK
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN----ADPEKIIEAAKL 430
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + ++ +G+DT++G G LSGGQ+QRIA+ARAL K+++LDE S LD E E
Sbjct: 431 AGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 578 YLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ +AI+ L G TV+ I HR S + ++I VL G+I G
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 4e-46
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 24/235 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I+ ++ Y + L D+SL I G +T++IG SG GKSTL LL RL D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 455 QNGKILIDGVDIKELD--PMYLRSQIGSVSQEPTLFSGTIYENILYGVN----DSSSVTK 508
G++L+DG DI +LD + LR ++G V Q+P F G+IY+N+ YG+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+ A ++A + V D + LSGGQ+QR+ +ARAL + ++LLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
TSALD + ++ I +L + T++ + H + R +++ L G++VE G
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-45
Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+G + + + P + IL +S +Q+G +IG SGSGKSTLA LL+ ++ P +
Sbjct: 332 QGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
G + +DG D+++ D L IG + Q+ LF GTI ENI ++ +I AA+
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAAR 447
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A + ++ G+DT +GE G LSGGQ+QRIA+ARAL +++LDE S LD+E
Sbjct: 448 LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507
Query: 577 EYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
E + +AI G TV+ IAHR S + ++I VL G+I
Sbjct: 508 EAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-45
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 44/222 (19%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ NN+ FSYP + + +L +LSL+++ G +++G SGSGKSTL LL PQ G+I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+DGV + +L+ L S I ++Q P LF T+ N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G SGG++QR+A+AR L++ + I+LLDE T LD E
Sbjct: 96 -------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ S I ++++ KT++ I H L+ I ++I L+ GKI+ G
Sbjct: 137 LLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-44
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 15/220 (6%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
N+ FSYP L+D+SL I+ G ++G +GSGKSTL LL L P +G++L+
Sbjct: 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
DG D+ +L LR ++G V Q P F T+ E + +G+ + + + +I +EA
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE-NLGLPEEEIEERVEEAL 119
Query: 520 AYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++ R LSGGQKQR+AIA L ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRD--------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+ ++KL EGKT++ + H L + + ++++ VL+ GK
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 85/253 (33%), Positives = 131/253 (51%), Gaps = 43/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVI--LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ ++ + L+D+SL+I G + +IG SG+GKSTL L+ L P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 458 KILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
+ +DG D+ L L R +IG + Q L S T++EN+ + + + + V K++I
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEIKQ 120
Query: 514 AAKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
E A+ Y LSGGQKQR+AIARAL KIL
Sbjct: 121 RVAELLELVGLSDKADRYP-----------------AQLSGGQKQRVAIARALANNPKIL 163
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
L DEATSALD E QS +E L + G T++ I H + +++ +++ VLD+G++
Sbjct: 164 LCDEATSALDPE---TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
Query: 618 VEIGSYAHLIKNP 630
VE G+ + + NP
Sbjct: 221 VEEGTVSEVFANP 233
|
Length = 339 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 5e-44
Identities = 160/592 (27%), Positives = 268/592 (45%), Gaps = 111/592 (18%)
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNIS 200
Y NV + + K ++ RLF +I+ QE ++FD KH G L I+ D L +
Sbjct: 888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHL--------LK 939
Query: 201 DGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAG-LAIVYGKFVR------KITRN-- 251
GL + +++ ++F++S ++S P VA L Y F+R ++T N
Sbjct: 940 TGLVNNIVIFTHFIVLFLVSM---VMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKD 996
Query: 252 VQDKLANAVQVA-----------------EERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294
V+ K N +E N+ TV + E + +D
Sbjct: 997 VEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSN 1056
Query: 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLY-YGGVMVSYETITVGNLSSFLLYAAYIGIS 353
+ K++ L + +GF+ S I S Y +G ++ TI V + L + G
Sbjct: 1057 KGQKRKTLVNSMLWGFSQ-SAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSY 1115
Query: 354 IGGLSNFYSELNKGLGACHRLWEIMEREPLIST--SGGKFFSHS--LKGEIDFNNIRFSY 409
G L + + + + + ++ R+ I +GG + +KG+I+ ++ F Y
Sbjct: 1116 AGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRY 1175
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-------- 461
SRP+ I DL+ S T+++G +GSGKST+ LL+R YD +N ++
Sbjct: 1176 ISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTND 1235
Query: 462 ------------DGVDIKELDPMYLRSQIGSVSQEPTLFSG------------------- 490
V +K ++ L + G ++ T+F
Sbjct: 1236 MTNEQDYQGDEEQNVGMKNVNEFSLTKE-GGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294
Query: 491 ----------------TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+IYENI +G D+ T+ D+ A K A F+ N +DT
Sbjct: 1295 RNLFSIVSQEPMLFNMSIYENIKFGKEDA---TREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKT 592
VG G LSGGQKQRIAIARAL+++ KILLLDEATS+LD+ +E L++ I + + KT
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411
Query: 593 VLTIAHRLSTIRKSNQICVLDK----GKIVEI-GSYAHLIKNPNSMFNKLMK 639
++TIAHR+++I++S++I V + G V+ G++ L+ + ++ K +K
Sbjct: 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 5e-44
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 45/233 (19%)
Query: 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I + F++ S + L D++L++ G + +++G GSGKS+L LL + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ + I VSQEP + +GTI ENIL+G K
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFG----------------KP 91
Query: 518 ANA--YGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
+ Y VI +G T +GE+GI LSGGQKQRI++ARA+ + I LL
Sbjct: 92 FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLL 151
Query: 566 DEATSALDAE-NEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
D+ SA+DA ++ ++ I L+ KT + + H+L + ++QI VLD G+
Sbjct: 152 DDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-42
Identities = 151/537 (28%), Positives = 253/537 (47%), Gaps = 65/537 (12%)
Query: 136 CCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCV 195
Y + +S+ K+L + + GSI+ ++F + G +INR + D + + V
Sbjct: 968 LVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNV 1027
Query: 196 T--QNISDG----LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKIT 249
N+ G L ST ++ VS + S A++ L+++ A L Y R++
Sbjct: 1028 AVFVNMFLGQIFQLLSTFVLIGIVSTI----SLWAIMPLLVLFYGAYL--YYQSTAREVK 1081
Query: 250 RNVQDKLANA---VQVAE--ERISNIRTVKSFSQEKLEMSHFNAK-MDDLFELAKKEALA 303
R D + + Q E +S IR K++ + M+ N + MD+
Sbjct: 1082 R--LDSITRSPVYAQFGEALNGLSTIRAYKAYDR----MAEINGRSMDN----------- 1124
Query: 304 KGVFFGFTGLSGN---AIILSVLYYGGVMV----SYETITVGNLSS----------FLLY 346
+ F +S N AI L L GG+M+ S+ + G + L Y
Sbjct: 1125 -NIRFTLVNMSSNRWLAIRLETL--GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSY 1181
Query: 347 AAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE---PLISTSGGKFFSHSLKGEIDFN 403
A I + + S L A R+ ++ PL+ + G I F
Sbjct: 1182 ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFE 1241
Query: 404 NIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
++ Y RP+ +L+ LS +I ++G +G+GKS++ L R+ + + G+ILID
Sbjct: 1242 DVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILID 1299
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G DI + M LR +G + Q P LFSGT+ N L N+ + D+ + + A+
Sbjct: 1300 GCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN-LDPFNEHNDA---DLWESLERAHLKD 1355
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ G D V E G S GQ+Q +++ARAL+++SKIL+LDEAT+A+D + L+Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
I + + T+L IAHRL+TI ++I VLD G++VE + +L+ N S F+K+++
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-41
Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 42/252 (16%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ + V L D+SL + G + +IG SG+GKSTL + L P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 459 ILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+L+DG D+ L L R +IG + Q L S T++EN+ + + + V K++I
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIEER 120
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
E A+AY LSGGQKQR+ IARAL K+LL
Sbjct: 121 VLELLELVGLEDKADAYP-----------------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 565 LDEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DEATSALD E QS + L + G T++ I H + +++ +++ V++KG++V
Sbjct: 164 CDEATSALDPET---TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
Query: 619 EIGSYAHLIKNP 630
E G+ + NP
Sbjct: 221 EEGTVEEVFANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-41
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 21/232 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ F Y +P IL+DLS I G +T ++G +GSGKSTL L L P++G++
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG----VNDSSSVTKSDIIHA 514
L+DG DI L P L ++ V Q P+ G T+YE +L G + +K D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ G + +R + LSGG++QR+ IARAL +++ ILLLDE TS LD
Sbjct: 120 EEALELLG-LEHLA--------DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
++ V + L G TV+ + H L+ R ++ + +L GKIV G+
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 9e-41
Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 40/250 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ S+ D +L +SL ++ G + +IG SGSGKSTL L L +P +G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 460 LIDGVDI-KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG---VNDSSSVTKSDIIHA 514
+DG D+ + D + LR ++G V Q+ LF T+ EN+ V S K++
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS---KAEAREK 116
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
A E A+AY LSGGQ+QR+AIARAL K++L
Sbjct: 117 ALELLEKVGLADKADAYPA-----------------QLSGGQQQRVAIARALAMDPKVML 159
Query: 565 LDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
DE TSALD E V ++ L EG T++ + H + R+ ++++ +D+GKI+E G
Sbjct: 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
Query: 623 YAHLIKNPNS 632
NP S
Sbjct: 220 PEEFFDNPKS 229
|
Length = 240 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 80/239 (33%), Positives = 121/239 (50%), Gaps = 29/239 (12%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ S+P+ +V L+D+S I+ G ++G SGSGKSTLA +L L P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 459 ILIDGVDIKELDPM---YLRSQIGSVSQE------PTLFSGTIYENILYGVNDSSSVTKS 509
I+ DG D+ +L R +I V Q+ P + TI E I + ++K
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ A G + + ++ LSGGQ+QR+AIARAL K+L+ DE T
Sbjct: 119 EARKEAVLLLLVGVGLP-----EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 570 SALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
SALD VQ+ I L++ G T+L I H L + K ++++ V+ GKIVE G
Sbjct: 174 SALDV----SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-40
Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ Y ++ ++D++L I+ G +IG SGSGK+T ++ RL +P +G+I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE- 517
LIDG DI +LDP+ LR +IG V Q+ LF T+ ENI V K I A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKKRADEL 117
Query: 518 ANAYGF-VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ G ++ + + LSGGQ+QR+ +ARAL ILL+DE ALD
Sbjct: 118 LDLVGLDPSEYADRYPH-------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 577 EYLVQ---SAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
+Q ++K + GKT++ + H + ++ +++I V+D G+IV+ + ++ NP +
Sbjct: 171 RKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
Query: 633 MF 634
F
Sbjct: 230 DF 231
|
Length = 309 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 7e-40
Identities = 74/223 (33%), Positives = 109/223 (48%), Gaps = 51/223 (22%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ Y +LND+SL I++G + +++G SGSGKSTL + L +P +G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 460 LIDGVDIKELDPMY--LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
LIDG D+ +L+ LR +IG V Q+ LF T+ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
LSGGQ+QR+A+ARAL +LLLDE TSALD
Sbjct: 101 -------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
V++ ++ L G TV+ + H L + ++++ VL GK
Sbjct: 136 RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 9e-40
Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 21/244 (8%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
EI+F + +S IL D+S+K + G++ +++G SG+GKSTL L+ RL DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAK 516
ILIDGVDIK +D + LR +IG V Q+P LF GT+ +NI YG + +V +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
Y D KN LSGG+ QR++IAR L ++LLLDE TSALD +
Sbjct: 120 LNKEYATR-DVKN------------LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+++ I KL TV+ I H + ++ + L+KG +VE NP +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNE 226
Query: 634 FNKL 637
KL
Sbjct: 227 VTKL 230
|
Length = 241 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 9e-40
Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ Y AV N+L+L+I G +IG SGSGK+T ++ RL +P +G+I
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
IDG DI+E DP+ LR +IG V Q+ LF T+ ENI V K I A E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADE- 116
Query: 519 NAYGFV-IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
V +D D E LSGGQ+QR+ +ARAL +LL+DE ALD
Sbjct: 117 -LLALVGLDPAEFADRYPHE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q ++L + GKT++ + H + R +++I ++ G+IV++G+ ++++P + F
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-39
Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ F YP L D+SL+I+ G +IG +GSGKSTL LL L P +G++
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 460 LIDGVDIK-ELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
L+DG+D E + LR ++G V Q P LF T+ + + +G+ ++ + + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVA 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATS 570
EA +VG ++ LSGGQKQR+AIA L +ILLLDE T+
Sbjct: 121 EAL-------------ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSN-QICVLDKGKIVEIGSYAHLI 627
LD + + ++KL E GKT++ + H L + + ++ VLD GKI+ G A +
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 628 KNPNSM 633
+ +
Sbjct: 228 NDAELL 233
|
Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 1e-39
Identities = 139/545 (25%), Positives = 248/545 (45%), Gaps = 68/545 (12%)
Query: 132 VVGACCNFGRV-------YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
VV A FG+V + + S+ K+L + + SI+ +F + TG +INR
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRF 1013
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
S D + + V ++ + + + +++ +S+ ISL + P+ L + Y +
Sbjct: 1014 SKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST----ISLWAIMPL--LILFYAAY 1067
Query: 245 ---------VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAK-MDDLF 294
VR++ + + A +S+IR K++ + M+ N K MD+
Sbjct: 1068 LYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR----MAKINGKSMDN-- 1121
Query: 295 ELAKKEALAKGVFFGFTGLSGN---AIILSVLYYGGVMV----SYETITVGNLSSFLLYA 347
+ F S N I L L GGVM+ ++ + GN + +A
Sbjct: 1122 ----------NIRFTLANTSSNRWLTIRLETL--GGVMIWLTATFAVLRNGNAENQAGFA 1169
Query: 348 AYIGISIGGLSNFYSELN----------KGLGACHRLWEIME---REPLISTSGGKFFSH 394
+ +G+ + N + L+ L + R+ ++ I +
Sbjct: 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229
Query: 395 SLKGEIDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
+G I F ++ Y P P +L+ LS + V+G +G+GKS++ L R+ +
Sbjct: 1230 PSRGSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
+ G+I+ID D+ + LR + + Q P LFSGT+ NI + S +D+
Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI----DPFSEHNDADLWE 1343
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + A+ + G D V E G S GQ+Q +++ARAL+++SKIL+LDEAT+++D
Sbjct: 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+ L+Q I + + T+L IAHRL+TI ++I VL G+++E S L+ S
Sbjct: 1404 VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSA 1463
Query: 634 FNKLM 638
F +++
Sbjct: 1464 FFRMV 1468
|
Length = 1495 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-39
Identities = 77/243 (31%), Positives = 133/243 (54%), Gaps = 18/243 (7%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
K ++ N+ S+ D ++D+SL I+ G +++G SG GK+TL ++ P +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
G+IL+DG DI ++ P R IG V Q LF T+ EN+ +G+ + K++I
Sbjct: 60 GEILLDGEDITDVPP-EKR-PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+EA + F +R LSGGQ+QR+A+ARAL+ + K+LLLDE SALDA
Sbjct: 118 EEALELVGLEGF--------ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ ++ +++L G T + + H + + S++I V++ G+I ++G+ + + P
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229
Query: 632 SMF 634
+ F
Sbjct: 230 TRF 232
|
Length = 352 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-39
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y D L+ +S +++ G + ++G +G+GK+TL +L L P +G+I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
L+ G D+ + +P +R +IG V QEP+L+ T+ EN+ LYG+ S + I
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL--SKEEAEERIEE 119
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ G + ++ LSGG KQR++IA AL+ ++L+LDE TS LD
Sbjct: 120 LLELF-----------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168
Query: 574 AENEYLVQSAIEKL--IEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628
E+ + + +L G T+L H L +++ +L+ GKI+ G+ L +
Sbjct: 169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 7e-39
Identities = 83/244 (34%), Positives = 136/244 (55%), Gaps = 5/244 (2%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
L GEI +++ Y + V L + I+ G + G +GSGKS+L++ R+ D
Sbjct: 16 LGGEIKIHDLCVRYENNLKPV-LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
+GKI+IDG+DI +L LRS++ + Q+P LFSG+I N+ + T + A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL----DPECKCTDDRLWEAL 130
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ A V G D +V E G S GQ+Q +ARA ++KS IL++DEAT+++D
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
E ++Q + +TV+TIAHR+STI ++ + VL +G +VE + +L+ + +F
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250
Query: 636 KLMK 639
L++
Sbjct: 251 SLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-38
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 33/254 (12%)
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
I+ ++ Y D L D++L I +T++IG SG GKSTL L R+ D
Sbjct: 2 TMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58
Query: 454 P-----QNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506
G++L+DG +I ++D + LR ++G V Q+P F +IY+N+ YG+
Sbjct: 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIK 118
Query: 507 TK--SDIIHAA-KEANAYGFVID--FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561
K +I+ ++ K+A + V D K+ LSGGQ+QR+ IARAL K +
Sbjct: 119 DKELDEIVESSLKKAALWDEVKDRLHKSALG---------LSGGQQQRLCIARALAVKPE 169
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA---HRLS-TIRKSNQICVLDKGK 616
+LL+DE TSALD + IE+LI E K TI H + R S+ G+
Sbjct: 170 VLLMDEPTSALDPIS----TLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGE 225
Query: 617 IVEIGSYAHLIKNP 630
+VE G + NP
Sbjct: 226 LVEFGPTDKIFTNP 239
|
Length = 253 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 4e-37
Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 17/226 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ + +Y S L+DLSL ++ G +++G SG GK+TL L+ L P +G+I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
LIDG D+ + P R+ IG V Q+ LF T+ ENI +G+ V K++I +E
Sbjct: 58 LIDGRDVTGVPP-ERRN-IGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVREL 114
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
G + ++ LSGGQ+QR+A+ARAL ++ +LLLDE SALDA+
Sbjct: 115 LELV-------GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167
Query: 579 LVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
++ +++L G T + + H + +++I V+++G+IV++G
Sbjct: 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ +Y AV L D+SL ++ G +++G SG GKSTL ++ L P +G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKE 517
+L+DG + P G V Q+ L T+ +N+ G+ + V K++ A+E
Sbjct: 61 VLVDGEPVTGPGP-----DRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERAEE 114
Query: 518 ANAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLLDEATSA 571
++ VG G LSGG +QR+A+ARAL +LLLDE SA
Sbjct: 115 L------LEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDK--GKIVEI 620
LDA +Q + + GKTVL + H + + ++++ VL G+IV
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 40/251 (15%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ NI +P + LN++SL I +G + VIG+SG+GKSTL + L P +G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 459 ILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKS 509
+L+DG D+ L LR QIG + Q L S T+++N+ L G + +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 510 ----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
+++ + +A+ Y LSGGQKQR+AIARAL K+LL
Sbjct: 122 TELLELVGLSDKADRYP-----AQ------------LSGGQKQRVAIARALASNPKVLLC 164
Query: 566 DEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
DEATSALD +S +E L + G T++ I H + +++ +++ V+D G++VE
Sbjct: 165 DEATSALDPAT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
Query: 620 IGSYAHLIKNP 630
G+ + + +P
Sbjct: 222 QGTVSEVFSHP 232
|
Length = 343 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 16/226 (7%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ +Y + V L +SL I+ G +++G SGSGKSTL +L L P +G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 459 ILIDGVDIKELDPM----YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
+ +DG DI +L + R IG V Q L T EN+ + + V K +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL-LAGVPKKERRE 119
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A+E + + + E LSGGQ+QR+AIARAL KI+L DE T LD
Sbjct: 120 RAEELLER---VGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 574 AENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+E V + +L G T++ + H +++I L GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-36
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 33/247 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ + S+ R +L + L ++ G + ++IG SGSGKSTL L++ L P +G++
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
LIDG DI EL LR ++G + Q LF T++EN+ + + + + +++ +I
Sbjct: 58 LIDGEDISGLSEAELYR--LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDE 567
E ++ VG RG LSGG K+R+A+ARAL ++LL DE
Sbjct: 116 IVLEK------LEA-------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
T+ LD ++ I L + G T + + H L T +++I VL GKIV G+
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 625 HLIKNPN 631
L + +
Sbjct: 223 ELRASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 9e-36
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 63/217 (29%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
N+ F Y R L+++SL +++G + +++G +GSGKSTL + L P +G+ILI
Sbjct: 2 IENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
DG DI +L LR +IG V Q SG
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ----LSG------------------------------- 83
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
G+R QR+A+ARAL+ +LLLDE TS LD + +
Sbjct: 84 --------------GQR---------QRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+ +L EG+TV+ + H ++++ VL GK
Sbjct: 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-35
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 49/223 (21%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ Y R +L+DLSL I++G + ++G +G+GKSTL L L P +G+IL+D
Sbjct: 3 ENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G D+ L P L +I V Q A +
Sbjct: 60 GKDLASLSPKELARKIAYVPQ------------------------------ALELLGLAH 89
Query: 523 FVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+R LSGG++QR+ +ARAL ++ ILLLDE TS LD ++ +
Sbjct: 90 LA------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137
Query: 582 SAIEKLI--EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+ +L GKTV+ + H L+ R ++++ +L G+IV G
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 4e-35
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 23/233 (9%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNG 457
I+ N+ Y + V L D++L+I++G +++G SGSGKSTL + LL D P +G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSG 60
Query: 458 KILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSG-TIYENI---LYGVNDSSSVTKS 509
++LI+G D+ +L L R +IG V Q L T+ EN+ L S+ K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ ++ K E LSGGQ+QR+AIARALI KI+L DE T
Sbjct: 121 AAEELLEVLGLEDRLLKKK------PSE----LSGGQQQRVAIARALINNPKIILADEPT 170
Query: 570 SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
LD++ V + +L + GKT++ + H + ++++ L GKI E
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 7e-35
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 34/233 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ + S+ +L D++L ++ G +++G SG GKSTL L+ L P +G++
Sbjct: 4 LEIEGVSKSFGGV---EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG + P IG V QE L T+ +N+ G+ +K++ AKE
Sbjct: 61 LLDGRPVTGPGP-----DIGYVFQEDALLPWLTVLDNVALGLEL-RGKSKAEARERAKEL 114
Query: 519 NAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+VG G LSGG +QR+AIARAL + K+LLLDE AL
Sbjct: 115 LE-------------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 573 DAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDK--GKIVEI 620
DA +Q + +L E KTVL + H + + ++++ VL G+I E
Sbjct: 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-34
Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 40/251 (15%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ + S+ R VIL+ + L + G + +++G SGSGKSTL L+L L P G+I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 460 LIDGVDIKEL---DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
LIDG DI +L + +R ++G + Q+ LFS T++EN+ + + + + + +S I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM-------LSGGQKQRIAIARALIKKSKILLLDEA 568
+VG RG LSGG ++R+A+ARA+ ++L LDE
Sbjct: 126 LMKLE-------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 569 TSALDAENEYLVQSA-IEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
TS LD + + I++LI G TV+ + H L ++ ++++ VL GK++
Sbjct: 173 TSGLDP-----ISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 621 GSYAHLIKNPN 631
G+ L+ + +
Sbjct: 228 GTPEELLASDD 238
|
Length = 263 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-34
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 51/221 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y + L+D+SL ++ G + ++G +G+GK+TL ++L L P +G+I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ G DIK+ +P ++ +IG + +EP+L+ T+ EN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
SGG KQR+A+A+AL+ ++L+LDE TS LD E+
Sbjct: 97 ------------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKI 617
+ +L EGKT+L +H L R +++ +L+ G+I
Sbjct: 133 EFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 6e-34
Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 44/255 (17%)
Query: 404 NIRFSYPSRPDAVI--------LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
N+ Y SR + ++D+S ++ G ++G SGSGKSTLA +L L P
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 456 NGKILIDGVDI----KELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSD 510
+G I+ DG D+ EL + R Q+ +L T+ + +
Sbjct: 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL-----AEPLRIHGG 399
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVG-ERGIM------LSGGQKQRIAIARALIKKSKIL 563
A + A V + +VG + LSGGQ+QR+AIARAL + K+L
Sbjct: 400 GSGAERRAR----VAELL----ELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLL 451
Query: 564 LLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+LDE SALD VQ+ + L+ G T L I+H L+ +R ++++ V+ G+
Sbjct: 452 ILDEPVSALDV----SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507
Query: 617 IVEIGSYAHLIKNPN 631
IVE G + +NP
Sbjct: 508 IVEEGPTEKVFENPQ 522
|
Length = 539 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 9e-34
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 23/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L +++L I +T++IG SG GKSTL L R+ D GK+L DG DI K++D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVID 526
+ LR ++G V Q+P F +IY+NI YG K ++ + K+A + V D
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 527 --FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+ LSGGQ+QR+ IARAL + ++LLLDE TSALD ++ I
Sbjct: 137 RLHDSALG---------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 585 EKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++L + T++ + H + R S++ G++VE G + NP
Sbjct: 188 QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNP 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 31/237 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +YP+ L D+SL I G ++IG SG+GKSTL L L +P +G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 460 LIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSS--------VT 507
LIDG DI +L L R QIG + Q+ L ++ EN+L G S
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K + A G ++D +R LSGGQ+QR+AIARAL+++ K++L DE
Sbjct: 119 KEEKQRALAALERVG-LLDKAY-------QRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 568 ATSALDAEN-----EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
++LD + + L + E EG TV+ H++ R+ +++I L G+IV
Sbjct: 171 PVASLDPASSRQVMDLLKRINRE---EGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDP 471
D +L + L ++ G + +IG SGSGKSTL + L +P +G I+IDG+ + + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
LR ++G V Q+ LF T+ ENI ++K++ A E + D +
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE--NEYLVQSAIEKL- 587
+ LSGGQ+QR+AIARAL K++L DE TSALD E E V ++ L
Sbjct: 132 YP-------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE--VLDVMKDLA 182
Query: 588 IEGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
EG T++ + H + R+ ++++ +D G+I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 84/255 (32%), Positives = 121/255 (47%), Gaps = 33/255 (12%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+ N+ Y A LN++SL+I+ G ++G SGSGKSTLA LL L P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 459 ILIDGVDIKELDPM-YLRSQIGSVSQEPT-----LFS-GTIYENILYGVNDSSSVTKSDI 511
IL+DG + + V Q+P + G I L S ++ I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR--PHGLSKSQQRI 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ G +R LSGGQ+QRIAIARALI + K+L+LDE TS
Sbjct: 122 AELLDQV-----------GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 571 ALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
ALD VQ+ I L+ G T L I+H L+ + ++I V+D G+IVEIG
Sbjct: 171 ALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226
Query: 624 AHLIKNPNSMFNKLM 638
L+ +P+ + + +
Sbjct: 227 EELLSHPSHPYTREL 241
|
Length = 252 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 37/250 (14%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
E++ N+R S+ +L D++L I+ G ++G SG GKSTL LR L +P
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTL----LRMIAGLEEP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIH 513
+G+ILIDG D+ +L P + I V Q L+ T+YENI +G+ V K++I
Sbjct: 56 TSGEILIDGRDVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDK 112
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDE 567
KE ++G ++ LSGGQ+QR+A+ARAL++K K+ LLDE
Sbjct: 113 RVKEVAK-------------LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
S LDA+ L++S I+KL E G T + + H +++I V++ G+I ++G+
Sbjct: 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
Query: 625 HLIKNPNSMF 634
L + P ++F
Sbjct: 220 ELYERPANLF 229
|
Length = 338 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-33
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ FSYP+ + L ++S +I G +++G +GSGKST++ +L L PQ+G+I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGV---NDSSSVTKSDIIHA 514
IDG+ I + + +R +IG + Q P F G T+ ++I +G+ K I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
AK+ + +D + LSGGQKQR+AIA L +I++ DE+TS LD
Sbjct: 127 AKKVGMEDY-LDKEPQN----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
+ + ++ + L + KT+++I H + ++++ V +GK++ G ++ N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-32
Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++SL+++ G ++G +GSGKS L + P +GKIL++G DI L P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I V Q LF T+Y+NI YG+ V K +I E I G D ++
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLK-KRKVDKKEIERKVLE-------IAEMLGIDHLLN 124
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
+ LSGG++QR+AIARAL+ KILLLDE SALD + ++ ++K+ + G TVL
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 595 TIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ H ++++ ++ GK++++G + K P + F
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-31
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
DA ILN++SL +++G ++ G SG GKSTL ++ L P +G +L +G D+ L P
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK--EANAYGFVIDFKNGF 531
R Q+ +Q P LF T+ +N+++ I + A A + F
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF----------PWQIRNRRPDRAAALDLLARFALP- 123
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--E 589
D+I+ + LSGG+KQRIA+ R L KILLLDE TSALD N+ ++ I + + +
Sbjct: 124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ 183
Query: 590 GKTVLTIAH 598
VL I H
Sbjct: 184 NVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 27/226 (11%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
++ SY P +L D+S +++ G +++G +G+GKSTL +L L P +G I +
Sbjct: 2 VEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG----VNDSSSVTKSDIIHA 514
G R +IG V Q ++ F ++ + +L G ++K+D
Sbjct: 59 FG-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-AK 112
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
EA + + + R I LSGGQ+QR+ +ARAL++ +LLLDE + +D
Sbjct: 113 VDEALERVGLSELAD--------RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 574 AENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQICVLDKGKI 617
+ + + + +L EG T+L + H L + + +++ +L++ +
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I +I F YP L D+S + G +++G +GSGKSTLA LL L P+ G I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
+ G+ + E +R Q+G V Q P F G T+ +++ +G+ ++ V + +++ +
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEMVERVDQ 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + DF N LSGGQKQR+AIA L + I++LDEATS LD
Sbjct: 124 ALRQVGMEDFLN-------REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
V + +L E G TVL+I H L +++++ V++KG+I+E G+ + K
Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 5e-31
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 35/239 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +YP L D++L+I G M ++IG SG+GKSTL L L DP +G+I
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS---- 509
L +GV I KEL + R IG + Q+ L ++ EN+L G +S +S
Sbjct: 62 LFNGVQITKLKGKELRKL--RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 510 -------DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ A + ++D +R LSGGQ+QR+AIARAL+++ KI
Sbjct: 120 FSKEDKAQALDALERVG----ILDK-------AYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 563 LLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+L DE ++LD E+ V ++ + +G TV+ H++ +K +++I L G+IV
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 5e-31
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I NN++ + L+D+SL I+SG + +++G SG+GKSTL ++ L P G+
Sbjct: 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 459 ILIDGVDIKELDPMYLRS-QIGSVSQEPTLFSG-TIYENILYG-----VNDSSSVTKSDI 511
I ++G + ++ + +R ++G V Q LF T+ +NI +G S + ++ +
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ G +R LSGGQ+QR+A+ARAL + K+LLLDE
Sbjct: 119 EELLRLVQLEGL------------ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
ALDA+ ++ + KL + G T + + H + ++++ VL++G+I ++G +
Sbjct: 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226
Query: 628 KNPNSMF 634
+P S F
Sbjct: 227 DHPASRF 233
|
Length = 345 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 7e-31
Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 17/239 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y V L+ +SL I+ G +++G SG GK+TL L+ P +G+I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG DI L P + R + +V Q LF T++ENI +G+ + K++I + A
Sbjct: 58 LLDGKDITNLPP-HKR-PVNTVFQNYALFPHLTVFENIAFGLR-LKKLPKAEI--KERVA 112
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A V + + LSGGQ+QR+AIARAL+ + K+LLLDE ALD +
Sbjct: 113 EALDLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 579 LVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q +++L + G T + + H + S++I V++KGKI +IG+ + + P + F
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-31
Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 21/219 (9%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
NI FSY + IL+DLSL + +G + ++ G +G+GK+TLA +L L +G IL++G
Sbjct: 4 NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 464 VDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
IK + R IG V Q+ LF+ ++ E +L G K+ + Y
Sbjct: 62 KPIKAKE---RRKSIGYVMQDVDYQLFTDSVREELLLG-LKELDAGNEQAETVLKDLDLY 117
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
++ LSGGQKQR+AIA AL+ +L+ DE TS LD +N V
Sbjct: 118 AL--KERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
I +L +GK V+ I H + K +++ +L G IV
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 31/233 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ +++RFSY P L + +G + +++G SG+GKSTL L+ P +G+I
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD---IIHAA 515
LI+GVD P R + + QE LF+ T+ +NI G++ + + AA
Sbjct: 57 LINGVDHTASPP-AERP-VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-- 573
+ GF+ + GE LSGGQ+QR+A+AR L+++ ILLLDE SALD
Sbjct: 115 AQVGLAGFL-------KRLPGE----LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 574 --AENEYLV-QSAIEKLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGS 622
AE LV Q E+ T+L + H + +++ LD G+I GS
Sbjct: 164 LRAEMLALVSQLCDER---KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-30
Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 16/242 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I+ N Y + + ++++KI +T++IG SG GK+TL + R+ D
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 455 QNGKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII 512
GKI G DI + LD R ++G V Q+PT F +IY+N+ +G +K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 513 HAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+E+ + D K+ + + G LSGGQ+QR+ IARAL + +++LLDE TSA
Sbjct: 121 RIVEESLKKAALWDEVKSELN----KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LD ++ +E+L E T++ + H + IR ++ I + +G+++E G +++ P
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236
Query: 631 NS 632
+
Sbjct: 237 KN 238
|
Length = 250 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQIGSVSQEPTLF-SGTIYENILYG 499
STL L+ L P +G IL+DG D L LR +IG V Q+P LF T+ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559
+ D + A + F+ E LSGGQKQR+AIARAL+KK
Sbjct: 61 LRDKE--ADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKK 108
Query: 560 SKILLLDEATS 570
K+LLLDE T+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-30
Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 19/240 (7%)
Query: 400 IDFNNI--RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+F N+ F +L+++ L I G + +IG SGSGKSTL + +L + +G
Sbjct: 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56
Query: 458 KILIDGVDIK--ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+++DG+ + ++D +R + G V Q+ LF T EN+++G +K +
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ 116
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A+E A K G LSGGQ+QR+AIARAL K K++L DE TSALD
Sbjct: 117 ARELLA-------KVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
Query: 575 ENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
E + V ++ L EG T++ + H + K ++++ +DKG+I E G LIKNP S
Sbjct: 170 ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229
|
Length = 240 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 23/244 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML---LLRLYDPQN 456
++F ++ F+YP LND+S I GS T++IG +GSGKST++ L LL D N
Sbjct: 6 VEFKHVSFTYPDSKKPA-LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
KI +DG+ + +R ++G V Q P F G T+ +++ +G+ ++ +V + ++I
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKI 123
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
++ A ++D+ + LSGGQKQR+AIA L + KI++LDE+TS LD
Sbjct: 124 VRDVLADVGMLDYIDS-------EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
Query: 575 ENEYLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
+ + I KL + TV++I H + ++Q+ VLD GK++ GS P
Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS-------PVE 229
Query: 633 MFNK 636
+F+K
Sbjct: 230 IFSK 233
|
Length = 282 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ Y + L+ +SL + G M ++G +G+GK+TL +L L P +G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYE-----NILYGVNDSSSVTKSDIIH 513
IDG D+ + P LR +IG + QE ++ T+ E L G+ K+ +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEV--KARVDE 113
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ N +G LSGG ++R+ IA+AL+ IL++DE T+ LD
Sbjct: 114 VLELVNLGDRA-------KKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIG 621
E ++ + +L E + V+ H + + NQ+ VL+KGK+V G
Sbjct: 163 PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 30/233 (12%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++++L+L I+ G+M +++G SG GK+T+ L+ L P G+I IDG D+
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH----- 72
Query: 474 LRS----QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
RS I V Q LF ++ EN+ YG+ V K + KEA + F+
Sbjct: 73 -RSIQQRDICMVFQSYALFPHMSLGENVGYGLK-MLGVPKEERKQRVKEALELVDLAGFE 130
Query: 529 NGF-DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
+ + D I SGGQ+QR+A+ARALI K K+LL DE S LDA L +S EK+
Sbjct: 131 DRYVDQI--------SGGQQQRVALARALILKPKVLLFDEPLSNLDAN---LRRSMREKI 179
Query: 588 IE-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
E T L + H S S+ + V++KGKI++IGS L + P S F
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
+ F Y +R L+D+S ++ G +++G +G+GKSTL LL RLY Q G+I + G
Sbjct: 6 GLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 464 VDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAA------K 516
D++ L ++G V Q+PTL ++ +N+ Y HAA
Sbjct: 63 HDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY--------------HAALHGLSRA 107
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA A + + G ++ L+GG ++R+ IARAL+ + +LLLDE T LD +
Sbjct: 108 EARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 577 EYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
+ + + L +G +VL H + I +++ VL +G+++ G+ A L
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ SY +RP +L D+SL ++ G +T++IG +G+GKSTL +L L P +G+
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG-------VNDSSSVTK 508
I I G +++ R +IG V Q+ ++ F T+ + +L G + K
Sbjct: 61 IKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+ A + D +GE LSGGQKQR+ +ARAL + +LLLDE
Sbjct: 118 EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 569 TSALDAENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
+ +D Q I L+ EGKTVL + H L + +++ L++ I
Sbjct: 167 FTGVDVAG----QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 17/242 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ + D V L+D+SL I SG + +++G SGSGK+TL L+ L P +G
Sbjct: 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDIIHAA 515
IL G D ++ +G V Q LF T+++N+ +G V S I A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI-RA 115
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
K V D + LSGGQ+QR+A+ARAL + K+LLLDE ALDA+
Sbjct: 116 KVHELLKLV-----QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 576 NEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
++ + +L + T + + H + ++++ V++KG+I ++G+ + +P S
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 633 MF 634
F
Sbjct: 231 PF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ F Y + LND+S ++ G S+IG +GSGKST L+ L + ++G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
+IDG + E + +R +IG V Q P F G T+ +++ +G+ ++ + ++ E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEMKERVNE 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + DFK LSGGQKQR+AIA A+ + KI++LDEATS LD E
Sbjct: 124 ALELVGMQDFKE-------REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+ I+ + + TV++I H L + S+++ V+ G++
Sbjct: 177 LELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-30
Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 14/206 (6%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-T 491
++G SG GK+TL LL P +G I++DG D+ + P +LR I V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-PPHLRH-INMVFQSYALFPHMT 58
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+ EN+ +G+ V +++I EA V + + LSGGQ+QR+A
Sbjct: 59 VEENVAFGLK-MRKVPRAEIKPRVLEA--LRLV-----QLEEFADRKPHQLSGGQQQRVA 110
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQ 608
+ARAL+ K KILLLDE SALD + +Q ++ + E G T + + H + S++
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR 170
Query: 609 ICVLDKGKIVEIGSYAHLIKNPNSMF 634
I ++ KGKI +IG+ + + P ++F
Sbjct: 171 IAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-30
Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 55/261 (21%)
Query: 404 NIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----G 457
N+ S+P+ V ++ +S +++ G + ++G SGSGKS LA ++ L N G
Sbjct: 6 NLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 458 KILIDGVDIKELDPMYLR----SQIGSVSQEPTLFS-------GT-IYENILYGVNDSSS 505
+IL DG D+ L LR +I + Q+P + S G I E + S
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLRLHGKGLS- 123
Query: 506 VTKSDIIHAAKEA-------------NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
K + A E +Y LSGG +QR+ I
Sbjct: 124 --KKEAKERAIELLELVGIPDPERRLKSYPH-----------------ELSGGMRQRVMI 164
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQI 609
A AL K+L+ DE T+ALD + + +++L G ++ I H L + + ++++
Sbjct: 165 AMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224
Query: 610 CVLDKGKIVEIGSYAHLIKNP 630
V+ G+IVE G + KNP
Sbjct: 225 AVMYAGRIVEEGPVEEIFKNP 245
|
Length = 316 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 9e-30
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 23/242 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ NI + L+D++L++ +GS+ +++G SGSGKSTL ++ L P +G+I
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVN---DSSSVTKSDIIHAA 515
++G D + +IG V Q LF T+ +NI +G+ + K+ +
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ G + N LSGGQ+QR+A+ARAL + ++LLLDE ALDA+
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 576 NEYLVQSAIEKL---IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
++S + KL + TV + + +++I V+ GKI +IGS + +P +
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPAN 224
Query: 633 MF 634
F
Sbjct: 225 PF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-29
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
+ND L I G + ++G SGSGKST +L RL +P G+I IDG +I + P+ L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
R +IG V Q+ LF TI +N G + + + A E ++ +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLK---LVGLEEYEH 124
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
E LSGG +QR+ +ARAL + ILL+DEA SALD +Q ++KL
Sbjct: 125 RYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
KT++ I H L IR ++I ++ G+IV++G+ +++NP + +
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 69/222 (31%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
++ +S I+ G ++G SG GKSTL L+L L +P +G+I
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI----------------- 70
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVIDFKNGFDTIV 535
LF G D + ++K + E G +F +
Sbjct: 71 ----------LFEG----------KDITKLSKEERRERVLELLEKVGLPEEFLYRYP--- 107
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------ 589
LSGGQ+QRI IARAL K+++ DE SALD VQ+ I L++
Sbjct: 108 ----HELSGGQRQRIGIARALALNPKLIVADEPVSALDV----SVQAQILNLLKDLQEEL 159
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T L I+H LS +R S++I V+ GKIVEIG + NP
Sbjct: 160 GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201
|
Length = 268 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 18/226 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDI--KELD 470
L+D+S+ I +T++IG SG GKST + R+ D + G++ G ++ ++D
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P+ LR +IG V Q+P F +IY+N+ YG + + + + A + V K
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV---K 171
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ D G+ LSGGQ+QR+ IARA+ +++L+DE SALD ++ IE+L
Sbjct: 172 DQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 589 EGKTVLTIAHRL-STIRKSNQICV-LDKGKIVEIGSYAHLIKNPNS 632
E TV+ + H + R S++ V L G++VE + +NP S
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPES 273
|
Length = 285 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 26/239 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
L +++L I +T+ IG SG GKSTL R+Y+ P+ G+IL+DG +I + D
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVID 526
LR+++G V Q+PT F +IY+NI +GV +++++ + A +A + V D
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + G LSGGQ+QR+ IAR + + ++LLLDE SALD + ++ I +
Sbjct: 149 -------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201
Query: 587 LIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
L + TV+ + H + R S+ + G+++E G N +++F K K QT D
Sbjct: 202 LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFG-------NTDTIFTKPAKKQTED 253
|
Length = 260 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-29
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
++L +S +I ++G +GSGKSTL + +R+ + G+I ++G +I LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE-ANAYGFVIDFKNGFDTI 534
Q + Q+P LF GT+ +N+ D S + AA E V G D+
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNV-----DPFLEASSAEVWAALELVGLRERVASESEGIDSR 1438
Query: 535 VGERGIMLSGGQKQRIAIARALIKK-SKILLLDEATSALDAENEYLVQSAIEKLIEGKTV 593
V E G S GQ+Q + +ARAL+KK S +L+DEAT+ +D + +Q+ + TV
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV 1498
Query: 594 LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+TIAHRL T+ + ++I V+D G + E+GS L+ N S+F+ ++
Sbjct: 1499 ITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 6e-29
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+D+S ++ G + +IG +G+GK+TL L+ P +G +L DG DI L P + ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP-HEIAR 74
Query: 478 --IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG---FVIDF---K 528
IG Q P LF T+ EN++ + +E A +++
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKL 587
+ D GE LS GQ++R+ IARAL K+LLLDE + L E E L + I +L
Sbjct: 135 DLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIREL 189
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
E G TVL + H + + ++++ VLD+G+++ G+ + NP
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 9e-29
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 16/223 (7%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL- 474
V +ND+SL ++ G + ++G SGSGKSTL + RL +P +GK+LIDG DI + L
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 475 ---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
R +I V Q L T+ EN+ +G+ + V +++ A EA ++ +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALE---LVGLEGW 153
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE- 589
E LSGG +QR+ +ARAL ILL+DEA SALD +Q + +L
Sbjct: 154 EHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 590 -GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KT++ I H L +R ++I ++ G++V++G+ ++ NP
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 28/231 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F N+ +YP +A L D+S I G + G SG+GKSTL L+ P GKI
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 460 LIDGVDI---KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
L++G D+ K + +LR QIG V Q+ L T+YEN+ + +I
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL-RVIGKPPREIRRRV 118
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEAT 569
E V+D +VG + LSGG++QR+AIARA++ + +LL DE T
Sbjct: 119 SE------VLD-------LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 570 SALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICV-LDKGKIV 618
LD + + + E++ G TVL H L + + + L+ G++V
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-------EL 469
+L +SL+ +G + S+IGSSGSGKST + L P G I ++G +I+ +L
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 470 DPM------YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
P LR+++G V Q L+S T+ EN++ V+K++ I A++ A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLA-- 138
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
K G LSGGQ+QR+AIARAL + +++L DE TSALD E V
Sbjct: 139 -----KVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193
Query: 583 AIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
++ L EG+T++ + H + R S+ + L +GKI E G + NP S
Sbjct: 194 VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 20/241 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F N+ F Y S + L D+S I G TS++G +GSGKST+A L++ + ++G+I
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSGTIYE-NILYGVNDSSSVTKSDIIHAAKE 517
+ I + + LR IG V Q P F G+I + ++ +G+ ++ +V ++ E
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL-ENHAVPYDEMHRRVSE 125
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A +++ + LSGGQKQR+AIA L +++LDEATS LD +
Sbjct: 126 ALKQVDMLERAD-------YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 578 YLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
+ + K+ T+++I H LS +++ + V++KG + + G P +F+
Sbjct: 179 QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEG-------TPTEIFD 231
Query: 636 K 636
Sbjct: 232 H 232
|
Length = 269 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-28
Identities = 120/472 (25%), Positives = 222/472 (47%), Gaps = 39/472 (8%)
Query: 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFI-----ISSKLALISLIIV 231
+G++ N I+ D + + Q Q GL S VSM+ + ++S + L ++
Sbjct: 397 SGKVTNMITTDANALQQIAEQ--LHGLWSAPF-RIIVSMVLLYQQLGVASLFGSLILFLL 453
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291
P+ L + + +RK+T+ V + E ++++ TVK ++ EK S +
Sbjct: 454 IPLQTLIV---RKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRN 510
Query: 292 DLFELAKKEALAKGVFFGFTGLSGNAI--ILSVLYYGGVMVSYETITVGNLSSFLLYAAY 349
+ +K L F N+I +++++ +G ++ +T + L A
Sbjct: 511 EELSWFRKAQL----LSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAV 566
Query: 350 IGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSY 409
+ + L N S++ + R+ E++ E I I N FS+
Sbjct: 567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPL--QPGAPAISIKNGYFSW 624
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469
S+ L+D++L+I GS+ +++G +G GK++L +L E
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA------------ET 672
Query: 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ +R + V Q +F+ T+ ENIL+G S +S+ A + A +D
Sbjct: 673 SSVVIRGSVAYVPQVSWIFNATVRENILFG-----SDFESERYWRAIDVTALQHDLDLLP 727
Query: 530 GFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV-QSAIEKL 587
G D T +GERG+ +SGGQKQR+++ARA+ S I + D+ SALDA + V S ++
Sbjct: 728 GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787
Query: 588 IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
++GKT + + ++L + ++I ++ +G I E G++A L K+ S+F KLM+
Sbjct: 788 LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLME 838
|
Length = 1495 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 16/221 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-- 475
+ND SL ++ G + ++G SGSGKSTL LL RL +P G+IL+DG DI +L LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 476 --SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I V Q L T+ EN+ +G+ + V K++ A EA + + + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKY- 161
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
E LSGG +QR+ +ARAL ILL+DEA SALD +Q + +L
Sbjct: 162 --PNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 591 KTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KT++ I H L +R ++I ++ G+IV++G+ ++ NP
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-28
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 54/273 (19%)
Query: 400 IDFNNIRFSYPSRP-------DAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451
++ ++R +P + D + ++ +SL ++ G ++G SGSGKSTL + LLRL
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 452 YDPQNGKILIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-----TIYENILYG-- 499
Q G+I DG DI KE+ P LR ++ V Q+P + T+ + I G
Sbjct: 337 IPSQ-GEIRFDGQDIDGLSRKEMRP--LRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLR 391
Query: 500 VNDSSSVTKSD----IIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIAR 554
V++ ++ ++ +I A +E + + + F SGGQ+QRIAIAR
Sbjct: 392 VHEPK-LSAAERDQRVIEALEEVGLDPATRNRYPHEF-----------SGGQRQRIAIAR 439
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SN 607
ALI K +++LLDE TSALD VQ+ + L+ G + L I+H L+ +R +
Sbjct: 440 ALILKPELILLDEPTSALDRS----VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCH 495
Query: 608 QICVLDKGKIVEIGSYAHLIKNPNSMFNK-LMK 639
++ V+ GKIVE G + NP + + L+
Sbjct: 496 RVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
DA ILN++S +++G + G SG GKSTL ++ L P +G +L +G DI L P
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R Q+ +Q PTLF T+Y+N+++ I + + + ++ DT
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIF---------PWQIRNQQPDPAIFLDDLERFALPDT 129
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-- 591
I+ + LSGG+KQRI++ R L K+LLLDE TSALD N++ V I + + +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI 189
Query: 592 TVLTIAHRLSTIRKSNQICVL 612
VL + H I ++++ L
Sbjct: 190 AVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 21/237 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
LN++SL + +G + VIG+SG+GKSTL + L P +G +++DG D+ L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q L S T++ N+ + + + K +I E A + D + + +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGGQKQR+AIARAL K+LL DEATSALD QS +E L E
Sbjct: 140 -------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT---TQSILELLKEINRR 189
Query: 590 -GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
G T+L I H + +++ + + V+ G+++E G+ + + +P + + T+
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLH 246
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 23/228 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + IRFSY +P L G +T+++G SGSGKSTL L+ PQ+G++
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD--IIHAAK 516
LI+GVD+ P + + QE LF+ T+ +N+ G++ +T D I A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ G + LSGG++QR+A+AR L++ +LLLDE +ALD
Sbjct: 114 A----------RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 577 EYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
+ + L TVL + H+ ++ + ++ LD G+I G
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 36/254 (14%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---- 454
++ N+ + + V + D+S +++ G + ++G SGSGKSTLA+ L+ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGS----VSQEP-TLFSGTIYENILYGVNDSSSVTKS 509
+G++++DG D+ L +R G + Q+P T N + + D + ++
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSL------NPVMTIGDQ--IREA 117
Query: 510 DIIH-AAKEANAYGFVID-FKNGFDTIVG----ERGIM----LSGGQKQRIAIARALIKK 559
+H A A ++ + VG ER LSGG +QR+ IA AL K
Sbjct: 118 LRLHGKGSRAEARKRAVELLE-----QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
K+L+ DE T+ALD + + ++ L G VL I H L + + ++++ V+ KG+
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232
Query: 617 IVEIGSYAHLIKNP 630
IVE G ++ NP
Sbjct: 233 IVETGPTEEILSNP 246
|
Length = 539 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F+N+ +YP A L+D+SL I+ G + G SG+GK+TL LL P G++
Sbjct: 2 IEFHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 460 LIDGVDIKELDPMY---LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
I G D+ L LR +IG V Q+ L T+YEN+ + + + +I
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL-EVRGKKEREIQRRV 118
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
A + ++ D + LSGG++QR+AIARA++ +LL DE T LD +
Sbjct: 119 GAALRQ---VGLEHKADAFPEQ----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171
Query: 576 NEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSN-QICVLDKGK 616
+ +++L G TV+ H LS + + ++ +LD G+
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-28
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI--KELD 470
L D+ L I ++T+ IG SG GKST L R+ D GKI +DG DI LD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV-TKSD----IIHAAKEANAYGFVI 525
+ LR+++G V Q+P F +IYEN+ YG +K++ + + ++A + V
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + E G LSGGQ+QR+ IARA+ +++L+DE SALD V+ I+
Sbjct: 155 DR-------LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 586 KLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+L + T++ + H + R S + G +VE+G + NP
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNP 253
|
Length = 267 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 58/255 (22%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---------GKILIDGVDI-- 466
L D+S++I +T+ IG SG GKSTL LR ++ N G+I +DG +I
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTL----LRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDS--------SSVTKSDIIH 513
K++D LR ++G V Q P F +IYEN++YG +N+ S+ + +
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD 156
Query: 514 AAKE---ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
K+ NA+G LSGGQ+QR+ IARA+ + ++LLLDE TS
Sbjct: 157 EVKDRLHENAFG-------------------LSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKN 629
ALD + ++ I +L T++ + H + R S+ + GK+VE G +
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG-------D 250
Query: 630 PNSMFNKLMKYQTMD 644
+++F K QT D
Sbjct: 251 TDTLFTSPAKKQTED 265
|
Length = 272 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-27
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 44/241 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KEL 469
IL D++L I +T+ IG SG GKST R+ D G++ IDG+D+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ + LR+++G V Q+P F +IY+N+ YG +G + K
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYG------------------PKLHGLAKN-KK 120
Query: 530 GFDTIV-------------GER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
D IV G+R LSGGQ+QR+ IARA+ K +LL+DE SAL
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 573 DAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
D ++++ I++L + T++ + H + +K S+++ G+IVE + + KNP
Sbjct: 181 DPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
Query: 632 S 632
S
Sbjct: 241 S 241
|
Length = 251 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 13/228 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ YP+ L +++L I G ++IG SG+GKSTL + RL +P +G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
L++G DI K+L + R +IG + Q L T+ EN+L+G +S +
Sbjct: 60 LLEGTDITKLRGKKLRKL--RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
++E + G +R LSGGQ+QR+AIARAL ++ ++L DE ++LD
Sbjct: 118 FSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ V ++++ + G TV+ H++ +K +++I L G+IV
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 82/245 (33%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL---YD 453
K D NI Y D IL D+++KI + S+ ++G SGSGKSTL +L RL YD
Sbjct: 5 KSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64
Query: 454 PQ---NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS 509
+ +GK+L G DI ++D + LR ++G V Q+P F +IY+NI Y + K
Sbjct: 65 SKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124
Query: 510 DIIHAAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+I +E G + + ++ + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEP 180
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLI 627
TS +D N ++ I +L ++ ++H + R ++ + L G++VE GS +
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
Query: 628 KNPNS 632
+P +
Sbjct: 241 TSPKN 245
|
Length = 257 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 18/243 (7%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
NN+ FS A +L +++LKI+ G M ++ GS+GSGK++L ML+L +P GKI
Sbjct: 38 NNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS 97
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G +I SQ + GTI ENI++GV+ KS + E +
Sbjct: 98 G-------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED--- 141
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQ 581
+ F +T++GE GI LSGGQ+ RI++ARA+ K + + LLD LD + + +
Sbjct: 142 -ITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
S + KL+ KT + + ++ ++K+++I +L +G G+++ L +KLM Y
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYD 260
Query: 642 TMD 644
T D
Sbjct: 261 TFD 263
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 47/239 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L ++L I+ +T++IG SG GKST L R+ D G++L+DG DI ++D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
LR ++G V Q+P F +IY+N+ YG H K+ K
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR----------THGIKD----------KKK 118
Query: 531 FDTIVGER------------------GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
D IV E+ + LSGGQ+QR+ IARAL + ++LL+DE TSAL
Sbjct: 119 LDEIV-EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 573 DAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
D + ++ I++L + T++ + H + R S++ G+IVE G L NP
Sbjct: 178 DPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNP 236
|
Length = 250 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-27
Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 59/234 (25%)
Query: 399 EIDFNNIRFSYPSRPDAV---ILNDLSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRL 451
+ F N+ + S P +L ++S K + G +T+++G SG+GKSTL A L
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVT 507
+G++LI+G LD R IG V Q+ PTL T+ E +++
Sbjct: 63 GV--SGEVLINGRP---LDKRSFRKIIGYVPQDDILHPTL---TVRETLMF--------- 105
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
AAK RG+ SGG+++R++IA L+ +L LDE
Sbjct: 106 ------AAK--------------------LRGL--SGGERKRVSIALELVSNPSLLFLDE 137
Query: 568 ATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIV 618
TS LD+ + V S + +L G+T++ H+ S+ +++ +L +G+++
Sbjct: 138 PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ +YP L+ +++ I +G ++G SG+GKSTL L+ + P +G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 460 LIDGVDIKELD----PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
++G D+ +L P YLR +IG V Q+ L +YEN+ + + VT
Sbjct: 59 RVNGQDVSDLRGRAIP-YLRRKIGVVFQDFRLLPDRNVYENVAF----ALEVTGVPPREI 113
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
K A ++ + + E LSGG++QR+AIARA++ IL+ DE T LD
Sbjct: 114 RKRVPAALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 575 ENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDKGKI 617
+ + + + ++K+ G TV+ H + +++ L++GK+
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 20/205 (9%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM- 472
D VIL+DL+L I+ G M ++IG SGSGKSTL ++ L +G++ ++G + L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 473 ---YLRSQIGSVSQEPTLF-SGTIYENI---LYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
+ R ++G + Q L + T+ EN+ L S + A ++ +
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL- 128
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ E LSGG++QR+A+ARA++K ++L DE T +LD +N V +
Sbjct: 129 ------KQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 586 KLI-EGKTVLTIAHRLSTIRKSNQI 609
+L EGKT++ + H ++++++
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-27
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 13/226 (5%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI-- 466
DA IL +++L I S+T++IG SG GKST L R+ D G I +DGVDI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVI 525
+D + LR ++G V Q+P F +I++N+ YG+ + I +E+ A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ K+ D + + LSGGQ+QR+ IAR + +++L+DE SALD + ++ I
Sbjct: 135 EVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 586 KLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KL E T++ + H + R S G+I+E G + NP
Sbjct: 191 KLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 43/237 (18%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L+D+SL+ + +T++IG SG GKST L R+ D G+IL+DG +I +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG-----VND----SSSVTKSDIIHAAKEANAY 521
+ LR ++G V Q+P F +I+EN+ YG V D + V +S + HAA
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS-LRHAAL----- 135
Query: 522 GFVIDFKNGFDTI---VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+D + + E + LSGGQ+QR+ IARAL + ++LL+DE SALD
Sbjct: 136 ---------WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP---- 182
Query: 579 LVQSAIEKLI-EGKTVLTIA---HRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ IE+LI E K TI H + R S+ GK++E+G + P
Sbjct: 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
|
Length = 253 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 26/231 (11%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELDPM 472
D++L I+ S+T+ IG SG GKST+ L R+++ P G++L+DG D+ +DP+
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 473 YLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKE----ANAYGFVIDF 527
+R IG V Q P F + +I +N++ G+ + K D+ ++ AN + V D
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR 141
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
+ + G LSGGQ+QR+ IARA+ + +LL+DE SALD + ++ I +L
Sbjct: 142 -------LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 588 IEGKTVLTIAHRL-STIRKSNQIC------VLDKGKIVEIGSYAHLIKNPN 631
+ T++ + H + R S+Q G++VEI + NP
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 18/242 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN 456
+ID ++ F Y D L +S++I+ S+ + IG SG GKST L R+ D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 457 ---GKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI 511
G+I IDG +I K + LR +G V Q P F +I+EN+ YG+ + V +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR-VNGVKDNAF 118
Query: 512 IHAAKEANAYGFVI--DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
I E G + + K+ E LSGGQ+QR+ IARA+ +LL+DE
Sbjct: 119 IRQRVEETLKGAALWDEVKDKLK----ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIK 628
SALD + V+ I +L + T++ + H + R S++ G++VE +
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 629 NP 630
NP
Sbjct: 235 NP 236
|
Length = 250 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 17/222 (7%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ + + L+DL+L I G ++G SG GK+T ++ L +P +G+I I G
Sbjct: 5 NVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
D+ +L P R I V Q L+ T+Y+NI +G+ V K +I +E
Sbjct: 62 RDVTDLPP-KDRD-IAMVFQNYALYPHMTVYDNIAFGLK-LRKVPKDEIDERVREVAE-- 116
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ ++ + LSGGQ+QR+A+ RA++++ K+ L+DE S LDA+ +++
Sbjct: 117 -----LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 583 AIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIG 621
+++L + G T + + H ++ + +++I V++ G+I +IG
Sbjct: 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 10/219 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474
L D++++I+ +T++IG+SG GKST R+ D +G + I+G D+K D + L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE--ANAYGFVIDFKNGFD 532
R +G V Q+P +F +IYENI Y + D A G + K+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT 592
+ + LSGGQ+QR+ IARAL K K+LLLDE TSALD + +++ +++L +
Sbjct: 138 ----QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 593 VLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++ + H + R ++ G+++E G +NP
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM--- 472
+L+ + L+++ G + ++IG SGSGK+TL + L P+ G I + + I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 473 -----YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA-YGFVI 525
LR +G V Q LF T+ ENI+ G K + A+E A G
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-- 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
G +T R LSGGQ+QR+AIARAL + +++L DE TSALD E V + I
Sbjct: 135 ---AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 586 KLIEGK-TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+L + K T++ + H +S R +++ +D+G+IVE G L +P
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-R 475
L +SL+++ G + +++G +G+GK+TL ++ L P++G+I+ DG DI L P R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-- 532
I V + +F T+ EN+L G A + D + ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLG--------------AYARRDKEAQERDLEEVYELF 123
Query: 533 ----TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+R LSGG++Q +AIARAL+ + K+LLLDE + L + + AI++L
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 589 --EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T+L + + +++ VL+ G+IV G+ A L+ +P
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 5e-26
Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 20/227 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
+ D+S+ S+T++IG SG GKST+ + R++D P GKIL+D DI + +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 471 PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD---IIHAA-KEANAYGFVI 525
P+ +R ++G V Q+P F +IY+N++ G + V +S+ I+ ++ K + V
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + LSGGQ+QR+ IAR + K +++L+DE SALD + ++ IE
Sbjct: 140 DRLKS-------NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 586 KLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L E T++ + H + R S+ G +VE G + P
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-26
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 13/226 (5%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+ND+SL+++ G + +IG +G+GK+TL L+ Y P +G ++ G DI L P +
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRI 76
Query: 476 SQIGSVS--QEPTLFSG-TIYENILYGVND----SSSVTKSDIIHAAKEANAYGFVIDFK 528
+++G Q LF G T+ EN+ G + S + + +EA +
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYLVQSAIEKL 587
G + LS GQ++R+ IARAL + K+LLLDE + L+ E E L + I +L
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIREL 195
Query: 588 --IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T+L I H + + +++I VL+ G+++ G+ + NP
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 27/245 (11%)
Query: 400 IDFNNIRFSY-PSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I N+ Y P + L++++++I+ G +IG +GSGKSTL L L P +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 458 KILIDGVDI--KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIH 513
KI+IDGVDI K++ +R ++G V Q P LF TI ++I +G + +++ +I +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLSEEEIEN 121
Query: 514 AAKEA-NAYGFVIDF-----KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K A N G +D+ K+ F+ LSGGQK+R+AIA + + KIL+LDE
Sbjct: 122 RVKRAMNIVG--LDYEDYKDKSPFE---------LSGGQKRRVAIAGVVAMEPKILILDE 170
Query: 568 ATSALDAENEYLVQSAIEKLIEGK--TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
T+ LD + + + I++L + T++ ++H + + K +++I V++KGK G+
Sbjct: 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
Query: 625 HLIKN 629
+ K
Sbjct: 231 EVFKE 235
|
Length = 287 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 45/239 (18%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470
L D+++ I +T++IG SG GKSTL R+ D G IL +G +I + D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +IG V Q P F +IYEN+ YG IH K K
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPR----------IHGEKN----------KKT 121
Query: 531 FDTIV-----------------GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
DTIV + + LSGGQ+QR+ IAR L +++L+DE SALD
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
++ IE L + TV+ + H + R S+ + GK++E + +NP+
Sbjct: 182 PIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 26/228 (11%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDI--KELD 470
L ++S++I S+T++IG SG GKST L R+ D GK+ I+G DI ++D
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +G V Q+P F +IY+N+ YG IH A + + G V++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPR----------IHGANKKDLDG-VVENALR 136
Query: 531 FDTIVGER-------GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ E + LSGGQ+QR+ IAR L K KI+L DE TSALD + ++
Sbjct: 137 SAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196
Query: 584 IEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
I L + T++ + H + R S+ G+++E G + NP
Sbjct: 197 IMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 17/239 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ I S+ + ++++L L I +G +++G SG GK+T+ L+ P +G+I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
++DG DI + + +V Q LF T++EN+ +G+ ++I EA
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLR-MQKTPAAEITPRVMEA 128
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ +F + LSGGQ+QR+AIARA++ K K+LLLDE+ SALD +
Sbjct: 129 LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181
Query: 579 LVQSAIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q+ ++ L G T + + H + + S++I V+ G+I + G+ + + P ++F
Sbjct: 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240
|
Length = 375 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 24/227 (10%)
Query: 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
SY S+ AV D+S + + G +T ++G +G+GK+TL ++ L P +GK+ IDGVD
Sbjct: 10 SYGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV 67
Query: 468 ELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAY 521
DP ++R +IG + E L++ T EN+ L G++ K+ I +K
Sbjct: 68 R-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE--IKARIAELSKR---- 120
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+ D VGE S G KQ++AIARAL+ IL+LDE TS LD
Sbjct: 121 ---LQLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 582 SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
I++L EG+ V+ +H + + +++ VL KG++V GS L
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 23/217 (10%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDIKELD 470
P V +D+SL ++ G + +++G +G+GKSTL +L LY P +G+I +DG V IK
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK--S 72
Query: 471 PM-YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA----YGFV 524
P +R IG V Q L T+ ENI+ G + S D A YG
Sbjct: 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILG-LEPSKGGLIDRRQARARIKELSERYGLP 131
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSA 583
+D D V + LS G++QR+ I +AL + +++L+LDE T+ L E + L +
Sbjct: 132 VD----PDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-I 182
Query: 584 IEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ +L EGKT++ I H+L + ++++ VL +GK+V
Sbjct: 183 LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 21/228 (9%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ I S+ V L+ +SL ++ G + +++G +G+GKSTL +L +Y P +G+
Sbjct: 9 LELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 459 ILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSG-TIYENILYG---VNDSSSVTKSDIIH 513
ILIDG + P + I +V QE +L ++ ENI G + + +
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 514 AAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
A+E G ID DT+VG+ LS Q+Q + IARAL +++L+LDE T+AL
Sbjct: 125 RARELLARLGLDIDP----DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL 176
Query: 573 DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ + I +L G ++ I+HRL + + +++I VL G++V
Sbjct: 177 TVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 14/222 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
++D+SL I G + +++G+SG GKSTL +L P G+I++DGVD+ + P Y R
Sbjct: 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP-YQRP- 92
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I + Q LF T+ +NI +G+ + K++I E + +F
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQEF-------AK 144
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
+ LSGGQ+QR+A+AR+L K+ K+LLLDE ALD + +Q + ++E G T +
Sbjct: 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 595 TIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
+ H + + + +I ++++GK V+IG + ++P + ++
Sbjct: 205 MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470
L +S+ I S+T++IG SG GKST L R+ D +G + +DG DI + ++
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------------DIIHAA 515
+ LR ++G V Q P F +I ENI YG + +++ +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 516 -KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
++A + V D + + + LSGGQ+QR+ IAR L +++L+DE SALD
Sbjct: 181 LRQAALWDEVNDR-------LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICV-LDKGKIVEIGSYAHLIKNPNS 632
++ IE+L E TV+ + H + R S+Q V L G++VE + +NP S
Sbjct: 234 IATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 19/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
LN +SL +T++IG SGSGKSTL + R+ D P+ G I+ +G +I D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA----KEANAYGFVID 526
+ LR +IG V Q+P F +IYEN++YG+ K + A K A+ + V D
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + + LSGGQ+QR+ IAR L KI+LLDE TSALD + ++ +
Sbjct: 141 -------RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 587 LIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
L + T+L + + R S++ G ++E + NP
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474
A +L ++SL I+ G ++G SG GKSTLA LLL L P G + G D+ +LD
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD---- 79
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------DIIHAAKEANAYGFVI 525
R Q + ++ L ++++ VN +V + + + ++A ++
Sbjct: 80 RKQRRAFRRDVQL----VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE-LL 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + LSGGQ QRI IARAL K K+++LDEA S LD + ++ +
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 586 KLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
KL + G L I H L ++ ++ V+DKG+IVE A L
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 14/222 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI-KELDP 471
L ++L I + +T++IG SG GKSTL L R+ D GK+ +DG DI +D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFKN 529
LR ++G V Q+P F +IYEN+ YG+ + + ++ E + G + + K+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLR-AQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ LSGGQ+QR+ IAR + + ++L+DE TSALD + ++ +E+L +
Sbjct: 138 RLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R+ S++ G++VE + NP
Sbjct: 194 NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 16/240 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ-- 455
I+ +++ S+ +L+ ++L+I ++T+++G SGSGKSTL + RL + P+
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 456 -NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSV-TKSDII 512
+G++ +DG DI ++D + LR ++ V Q P +I+EN+ G+ + V +K ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 513 HAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A + D K+ D G+ LSGGQ+QR+ IARAL + ++LL DE T+
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LD EN ++S +L + T++ + H R S+ + L KG+IVE G + NP
Sbjct: 177 LDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-25
Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ +Y ++DLSL + G + ++G +G+GK+T +L P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
I+G I+ D R +G Q LF T+ E++ L G+ S
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------E 109
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+E V+ + + LSGG K+++++A ALI +LLLDE TS LD
Sbjct: 110 IKEEVELLLRVLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626
+ + I ++ +G++++ H + ++I ++ GK+ IGS L
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-25
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ +SYP A L +++L I+ G +IG +GSGKSTLA+ L L PQ GK+
Sbjct: 2 IRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 460 LIDGVDIKELDPMY-LRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
L+ G+D + + +R +G V Q P T F G T+ E++ +G
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG----------------- 102
Query: 517 EANAYGFVIDFKNGFDTIVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDE 567
N I+ + D + E G+ LSGGQ Q +A+A L + + L+ DE
Sbjct: 103 PENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
Query: 568 ATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
TS LD ++ V I+KL E GKT++ I H L + +++I V+D+GKIV G ++
Sbjct: 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
Query: 627 IKNPN 631
+ + +
Sbjct: 223 LSDVS 227
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-25
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI--KELD 470
+ + ++ + +T++IG SGSGKST L R+ D G+IL G+DI KE++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILY-----GVNDSSSVTKSDIIHAA-KEANAYGFV 524
+R IG V Q P F+ +IYENI + GV D + +I+ + K+A + V
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVL--DEIVETSLKQAALWDQV 153
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
D + + + LSGGQ+QR+ IARA+ K ILL+DE SALD + ++ +
Sbjct: 154 KDDLH-------KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 585 EKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+L + T++ + H + R S+ G ++E ++ NP
Sbjct: 207 FELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNP 253
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 26/249 (10%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-- 453
+K +++ N+ Y + LND++L I +T++IG SG GKST L R+ D
Sbjct: 1 MKIKMESKNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 454 ---PQNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDS 503
G++L+DG +I K++D + LR ++G V Q+P F +IY+N+ YG + D
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 504 SSVTKSDIIH-AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ K I+ A K+A + V D + + LSGGQ+QR+ IAR + K +
Sbjct: 118 KELDK--IVEWALKKAALWDEVKDDLK-------KSALKLSGGQQQRLCIARTIAVKPDV 168
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
+L+DE TSALD + ++ + +L + T++ + H + R S+ G ++E
Sbjct: 169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228
Query: 622 SYAHLIKNP 630
+ P
Sbjct: 229 KTEKIFLEP 237
|
Length = 251 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 21/214 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
IL +SL + G + +++G +G+GK+TL ++ L P++G I DG DI L P + R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERA 73
Query: 477 Q--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ IG V + +F T+ EN+L G + + Y K
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFPRLKERRKQ 128
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD---AENEYLVQSAIEKLI-E 589
+ G LSGG++Q +AIARAL+ + K+LLLDE + L E + AI +L E
Sbjct: 129 LAGT----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE---IFEAIRELRDE 181
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
G T+L + + +++ VL++G++V G+
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-- 455
G I +++R +Y + +L+DLSL+I++G + ++IG SG GK+TL +
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
G+I I D+ P + R + + Q LF + +N+ +G+ + + K+DI A
Sbjct: 61 TGRIAIADRDLTHAPP-HKRG-LALLFQNYALFPHLKVEDNVAFGLR-AQKMPKADI--A 115
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+ A+A V G LSGG +QRIAIARA+ + +LLLDE SALDA
Sbjct: 116 ERVADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA 170
Query: 575 ENEYLVQSAIEKLIE---GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++ I L E T+L + H + + +++ ++ G++ G L P
Sbjct: 171 NIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
Query: 631 NSMF 634
F
Sbjct: 231 ADGF 234
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ F Y D LN +S I G S+IG +GSGKST A L+ L++ GK+
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
IDG + + LR +IG V Q P T+ +++ +G+ ++ + + ++I E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM-ENQGIPREEMIKRVDE 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A ++DFK LSGGQKQR+A+A + + +I++LDE+TS LD
Sbjct: 124 ALLAVNMLDFKT-------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 578 YLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+ I ++ E TVL+I H L S++I V+ G+I++ + + L M
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234
|
Length = 277 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
L D+SL ++ G ++G SG GK+TL ++ L G I G DI L P +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
G V Q LF T+ +NI YG+ + + ++++ E ++
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLD---LVGLPGSERKYP 132
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYLVQSAIEKLIE--GKT 592
G+ LSGGQ+QR+A+ARAL +LLLDE SALDA E+L I +L G T
Sbjct: 133 GQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVT 187
Query: 593 VLTIAH----RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ + H LS +++I V++ G I ++G+ + ++P + F
Sbjct: 188 TIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 24/244 (9%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN---G 457
N + F Y L ++++ + +T++IG SG GKST R++D P N G
Sbjct: 20 NKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 458 KILI--DGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN----DSSSVTKS 509
+I++ D V+I E+DP+ +R +I V Q+P F +I+EN+ YG+ S+ +
Sbjct: 77 EIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE 136
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ +A + A + V D +G+ LSGGQ+QR+ IARAL +ILL DE T
Sbjct: 137 RVENALRNAALWDEVKDR-------LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIK 628
SALD ++ I L T+L + H + R S+ + G+++E G+ +
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249
Query: 629 NPNS 632
P +
Sbjct: 250 KPKN 253
|
Length = 265 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L + L +T++IG SG GKST L R+ D G + + G +I D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFK 528
+ LR Q+G V Q+P F +IYEN++YG+ + V ++ A E + I + K
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLR-LAGVKDKAVLDEAVETSLKQAAIWDEVK 139
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ E + LSGGQ+QR+ IAR L K ++LLDE TSALD + +++ + +L
Sbjct: 140 DHLH----ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 589 EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ T++ + H + R S++ G ++E + NP
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238
|
Length = 252 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 400 IDFNNIRFS-YPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I +N + + P LN LSL+I G +VIGS+G+GKSTL + P +G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEP---TLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ILIDGVD+ + + + V Q+P T TI EN+ + S A
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS---SA 118
Query: 515 AKEANAYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
E F G + + +R +LSGGQ+Q +++ A + KILLLDE T+A
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 572 LDAENEYLVQSAIEKLIEGK--TVLTIAHRL-STIRKSNQICVLDKGKIV 618
LD + V K++E T L + H + + N++ +L GKIV
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 25/229 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + +R+ Y P + L + G + +++G SG+GKSTL L+ +P +G I
Sbjct: 1 LALDKVRYEYEHLP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAA 515
++ L P + + + QE LF+ T+ +NI G++ ++ + ++ AA
Sbjct: 56 KVNDQSHTGLAPY--QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++ + + D + + LSGGQ+QR+A+AR L++ + ILLLDE SALD
Sbjct: 114 QQ-------VGIADYLDRLPEQ----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 576 NEYLVQSAIEKLIEGK--TVLTIAHRLSTIRKS-NQICVLDKGKIVEIG 621
+ + +++L + T+L + H LS R +QI V+ +GKI +
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-24
Identities = 122/522 (23%), Positives = 232/522 (44%), Gaps = 61/522 (11%)
Query: 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVS 210
+++K+L E++ S++ A + K G ++NR + D +++ + + D ++ T++V
Sbjct: 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV- 1013
Query: 211 AGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNI 270
+ +F++S I + +P ++ F+R + Q + + I+++
Sbjct: 1014 --LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSL 1071
Query: 271 R---TVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTG-----LSGNAIILSV 322
+ T+++F ++ S+F + LF K L +F + II
Sbjct: 1072 KGLWTIRAFGRQ----SYF----ETLFH--KALNLHTANWFLYLSTLRWFQMRIDIIFVF 1121
Query: 323 LYYGGVMVSYETITVG------------NLSSFLLYAAYIGISIGGLSNFYSELNKGLGA 370
+ ++ T G N+ S L +A I + GL S + K +
Sbjct: 1122 FFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI-- 1179
Query: 371 CHRLWEIMEREPLISTSGGKFF---------SHSLK-----GEIDFNNIRFSYPSRPDAV 416
++ + EP S GGK+ H+ K G++D + Y AV
Sbjct: 1180 -----DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAV 1234
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
L DLS ++ G ++G +GSGKSTL LLRL + G+I IDGV + R
Sbjct: 1235 -LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
G + Q+ +FSGT +N+ + + +I A+E + F + D ++
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+ G +LS G KQ + +AR+++ K+KILLLDE ++ LD +++ +++ TV+
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
HR+ + + Q V++ + + S L+ N S+F + M
Sbjct: 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 4e-24
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 19/197 (9%)
Query: 409 YPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDI 466
YP P+ L L+ + G + +++G++G+GKSTL + L L PQ+G +LIDG +D
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 467 KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHA-AKEANAYGF 523
+ R ++G V Q+P LF+ + +++ +G + + +EA
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG--LSEAEVERRVREALTAVG 116
Query: 524 VIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ ER LSGG+K+R+AIA A+ + +LLLDE T+ LD + +
Sbjct: 117 ASGLR--------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 583 AIEKLI-EGKTVLTIAH 598
+ +L EG TV+ H
Sbjct: 169 ILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 5e-24
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 11/221 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L+ +SL + +T++IG SG GKST L R+ D G+I +G +I ++D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR ++G V Q+PT F ++Y+N+ YG+ + V ++I E + I +K
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAI-WKET 137
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
D + SGGQ+QRI IARAL + K++LLDE TSALD + ++ + +L
Sbjct: 138 KDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
Query: 591 KTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
T + + H L R S+Q L G ++E G + P
Sbjct: 197 YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 7e-24
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 30/234 (12%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG------------- 463
+L+ L+ + +G ++IG SGSGKST+ +L+ L G+I ++G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 464 --VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
D K L M R++IG V Q LF ++ +L V ++ + + A E A
Sbjct: 75 VPADEKHLRQM--RNKIGMVFQSFNLFP---HKTVLDNVTEAPVLVLG-MARAEAEKRA- 127
Query: 522 GFVIDFKN--GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
++ + G LSGGQ+QR+AIARAL + K++L DE TSALD E
Sbjct: 128 ---MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 580 VQSAIEKLI-EGK-TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
V + I +L E T+L + H + R+ ++++C DKG+IVE G + + P
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-24
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 20/217 (9%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
V+L D+S+ + G +T V+G++GSGKSTL LL ++ G++ + R
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------R 721
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFKNGFDTI 534
S I V Q+ + + T+ NIL+ ++ + +D + ++ EA+ + G +T
Sbjct: 722 S-IAYVPQQAWIMNATVRGNILF-FDEEDAARLADAVRVSQLEAD----LAQLGGGLETE 775
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE-NEYLVQSAIEKLIEGKTV 593
+GE+G+ LSGGQK R+++ARA+ + LLD+ SALDA E +V+ + GKT
Sbjct: 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTR 835
Query: 594 LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ H++ + +++ + L G++ GS A ++
Sbjct: 836 VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-24
Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 21/215 (9%)
Query: 418 LNDLSLKIQ---SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELD 470
L D +LKI + +T + G+SG+GKSTL + L P G I+++G + K+++
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 471 PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ +IG V Q+ LF + EN+ +G+ + + D I + + G
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN--REDRISVDELLDLLGL------ 121
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
D ++ LSGG+KQR+A+ARAL + ++LLLDE SALD + ++++ +
Sbjct: 122 --DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 590 --GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
V+ + H LS +++I V++ G++ IG
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 1e-23
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 24/233 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI---------- 466
+L +SL+ +G + S+IGSSGSGKST + L P G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 467 KELDP---MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
K D LR+++ V Q L+S T+ EN++ ++K + A + A Y
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE---ARERAVKY- 135
Query: 523 FVIDFKNGFDTIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+ K G D G+ + LSGGQ+QR++IARAL + ++LL DE TSALD E V
Sbjct: 136 --LA-KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
+++L EGKT++ + H + R S+ + L +GKI E G+ L NP S
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N I Y + L D++L G ++G SG+GKS+L +L L P++G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 460 LIDG--------VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD 510
I G K + LR +G V Q+ L+ T+ +N++ ++K
Sbjct: 60 NIAGNHFDFSKTPSDKAI--RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ A++ + + + F + LSGGQ+QR+AIARAL+ + ++LL DE T+
Sbjct: 118 ALARAEKLLERLRLKPYADRFP-------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 571 ALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
ALD E + S I +L E G T + + H + RK ++++ ++ G IVE G +
Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-23
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 18/229 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L ++S K++ G + +V GS+GSGKS+L M+++ +P GKI G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I Q + GTI +NI++G++ S I E + + F T++G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED----IALFPEKDKTVLG 543
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD + LD E + +S + KL+ KT +
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
+ +L ++K+++I +L +G G+++ L + L+ + D
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFD 652
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 30/231 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
ID + SY D ++N LS + SG ++G +G+GKST+A ++L + P GKI
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENIL-YG------VNDSSSVTKSDI 511
+ GV + R++IG V Q L T+ EN+L +G + +V S +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A E+ A D V + LSGG K+R+ +ARALI ++L+LDE T+
Sbjct: 158 EFARLESKA-----------DARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG-KIVE 619
LD +L+ + L+ GKT+L H + R +++CVL+ G KI E
Sbjct: 203 LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
|
Length = 340 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 2e-23
Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 14/221 (6%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDPM 472
+++L +Q G++ ++IG SG GK+T + R++D G+IL+DG DI +DP+
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 473 YLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNG 530
+R ++G V Q+P F + ++++N++ G+ + + ++ A+ + + D K+
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR 141
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
T LSGGQ+QR+ IARAL + +ILL+DE TSALD + ++ + L +
Sbjct: 142 LKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R S+ G +VE G L NP
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 2e-23
Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 23/236 (9%)
Query: 400 IDFNNIRFSYPS-RP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ ++Y + P + L D++L I+ GS T+ IG +GSGKST+ LL L+ P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 458 KILIDGVDI----KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKSDI 511
+ +D I K D +R ++G V Q E LF T+ +++ +G + V++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN-FGVSQEEA 121
Query: 512 IHAAKEANAY-GFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
A+E A G KN F+ LSGGQ +R+AIA L + KIL+LDE
Sbjct: 122 EALAREKLALVGISESLFEKNPFE---------LSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 569 TSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
T+ LD + + + +KL + G T++ + H + + ++ + VL+KGK+V G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 34/248 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL--AMLLLRLYDPQNG 457
I N FS+ S+ + L++++L + GS+ +++GS+G GK++L AML
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML---------- 664
Query: 458 KILIDGVDIKELDPM-----YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII 512
EL P +R + V Q +F+ T+ +NIL+G S +
Sbjct: 665 ---------GELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFG-----SPFDPERY 710
Query: 513 HAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A + A +D G D T +GERG+ +SGGQKQR+++ARA+ S + + D+ SA
Sbjct: 711 ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 572 LDAE-NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LDA + I+ + GKT + + ++L + + ++I ++ +G I E G+Y L N
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN- 829
Query: 631 NSMFNKLM 638
+F KLM
Sbjct: 830 GPLFQKLM 837
|
Length = 1622 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 23/220 (10%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELDPMYLRSQ 477
I S +T++IG SG GKST + R+ D P G ++ DG DI K D + LR +
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 478 IGSVSQEPTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAA-KEANAYGFVIDFKNGF 531
IG V Q+P F +I++NI L+G+ND + +I+ + ++A + V D
Sbjct: 122 IGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQL--EEIVEKSLRKAALWDEVSDR---- 175
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
+ + + LSGGQ+QR+ +AR L + +ILLLDE TSALD + ++ I++L
Sbjct: 176 ---LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 592 TVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R S+ +G +VE A L NP
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 3e-23
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472
L++++++I +G +T ++G G GKS+L + +L GK+ + E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 473 YLRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-F 527
RS+ + +Q+P L + T+ ENI +G S A +A + ID
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG-----SPFNKQRYKAVTDACSLQPDIDLL 126
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE-NEYLVQSAIEK 586
G T +GERGI LSGGQ+QRI +ARAL + + I+ LD+ SALD +++L+Q I K
Sbjct: 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186
Query: 587 LI--EGKTVLTIAHRLSTIRKSNQICVLDKG 615
+ + +T++ + H+L + ++ I + G
Sbjct: 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 4e-23
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 24/196 (12%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---------GKILIDGVDI-- 466
+ ++ L I +T+ IG SG GKST+ LR ++ N GK+ G ++
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTI----LRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFV 524
++DP+ +R +IG V Q+P F +IY+NI YG +N + + ++A + V
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV 141
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
D + G+ LSGGQ+QR+ IARA+ + +++L+DE SALD + ++ +
Sbjct: 142 KDKLK-------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 585 EKLIEGKTVLTIAHRL 600
+L E T++ + H +
Sbjct: 195 HELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-23
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 25/231 (10%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ----NGKILIDGVDIKELDPMYLR 475
DL+L ++ G + +++G SGSGKS + +L L P +G+IL+DG + L P+ +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG---RPLLPLSIR 60
Query: 476 S-QIGSVSQEPT-----LFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
I ++ Q P LF+ G L + S ++ I+ A +
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG-------LP 113
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ + ++ + LSGG QR+ IA AL+ + L+ DE T+ LD N+ V + +L
Sbjct: 114 DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 589 E--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
+ G +L I H L + R ++++ V+D G+IVE G+ + NP +
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 5e-23
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
ILNDLSL + +G +T++IG +G GKSTL RL PQ+G + + I L L
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 477 QIGSVSQEPTLFSG-TIYENILYG------------VNDSSSVTKSDIIHAAKEANAYGF 523
++ + Q G T+ E + YG D++ V + A E
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ------AME------ 124
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ + + R LSGGQ+QR +A L + + ++LLDE T+ LD ++ +
Sbjct: 125 ----QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180
Query: 584 IEKL-IEGKTVLTIAHRLSTIRKSNQIC-------VLDKGKIVEIGS 622
+ +L +GKTV+T+ H L NQ VL G ++ G+
Sbjct: 181 MRELNTQGKTVVTVLHDL------NQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 5e-23
Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS- 476
+ D SL I+ G + ++G SGSGKST+ LL RL +P G++LIDGVDI ++ LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 477 ---QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I V Q L T+ +N +G+ + + + + A +A + ++ + +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLENYAHSYP 162
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEG 590
LSGG +QR+ +ARAL ILL+DEA SALD +Q + KL
Sbjct: 163 D-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+T++ I+H L +R ++I ++ G++V++G+ ++ NP
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
|
Length = 400 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 6e-23
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
RF + ++ +S ++ G +T ++G +G+GK+T +L L +P G +DG D
Sbjct: 10 RFRDVKKTVQA-VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 466 IKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEAN 519
+ + +P R ++G VS L+ T EN+ LYG+ K D + A E
Sbjct: 69 VVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL-------KGDELTARLEEL 120
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A + + D VG S G +Q++AIARAL+ +LLLDE T+ LD
Sbjct: 121 AD--RLGMEELLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 580 VQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
++ I +L GK +L H + + R +++ VL +G++V G
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 6e-23
Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I N+ SY + +AV ++ I G +T++IG SG GKST+ L R+ D
Sbjct: 14 ISLQNVTISYGTF-EAV--KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 455 QNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSD 510
G++L DG D+ +DP+ +R +IG V Q+P F +IYENI +G +N +
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ + ++A + D N E G LSGGQ+QR+ IAR + + +++L+DE S
Sbjct: 131 VERSLRKAAVWDECKDKLN-------ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
ALD + ++ + +L + T++ + H +
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 8e-23
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL---LRLYDPQNGKILIDGVDIKE 468
A ILND+SL ++SG + +++GSSGSGK+TL + + +G+IL +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QP 73
Query: 469 LDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
P + + V Q+ L G T+ E + Y SD I + +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-----DVLL 128
Query: 528 KNGFDTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
++ T +G +GI SGG+++R++IA L+ K+L+LDE TS LD+ + S +
Sbjct: 129 RDLALTRIGGNLVKGI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186
Query: 585 EKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+L + V+ H R R ++I +L G+IV G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 8e-23
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 19/250 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N I Y + L D++L G ++G SG+GKS+L +L L P++G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 460 LIDGVDIK------ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDII 512
I G + LR +G V Q+ L+ T+ EN++ ++K +
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
A++ + + + + + LSGGQ+QR+AIARAL+ + ++LL DE T+AL
Sbjct: 120 ARAEKLLKRLRLKPYADRYP-------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 573 DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
D E + S I++L E G T + + H + RK ++++ ++ G IVE G + +
Sbjct: 173 DPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQ 232
Query: 631 NSMFNKLMKY 640
F + +
Sbjct: 233 TEAFKNYLSH 242
|
Length = 242 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 8e-23
Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 7/239 (2%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G++ ++ Y +AV L ++S I G ++G +GSGKSTL LRL + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAV-LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
I IDGV + R G + Q+ +FSGT +N+ + + +I A+E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL----DPYGKWSDEEIWKVAEE 114
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
+ F D ++ + G +LS G KQ + +AR+++ K+KILLLDE ++ LD
Sbjct: 115 VGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
+++ +++ TV+ HR+ + + + V+++ K+ + S L+ N S F +
Sbjct: 175 QVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQ 232
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 9e-23
Identities = 73/246 (29%), Positives = 129/246 (52%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++++SYP L ++ K + G M +++G +G+GKSTL + + P +G++
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 460 LIDGVDIK--ELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHA 514
LI G IK + + +R +G V Q P LF+ T+ E++ +G +N ++K ++
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN--LGLSKEEVEKR 117
Query: 515 AKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
KEA A G GF+ LSGGQK+R+AIA L K +I++LDE TS LD
Sbjct: 118 VKEALKAVGM-----EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 574 AENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
S I KL+ EG T++ H + + ++++ V+ GKI++ G+ +
Sbjct: 170 PMG----ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
Query: 628 KNPNSM 633
+ ++
Sbjct: 226 SDIETI 231
|
Length = 275 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 1e-22
Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 27/247 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I +N F++ +R LN ++ I G++ +V+G G GKS+L LL D G +
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+ G + V Q+ + + ++ ENIL+G + + +
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVL-------E 735
Query: 520 AYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE- 575
A + D + +G T +GE+G+ LSGGQKQR+++ARA+ + I L D+ SA+DA
Sbjct: 736 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
Query: 576 NEYLVQSAI--EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+++ + I E +++ KT + + H +S + + + I V+ GKI E+GSY L++ +
Sbjct: 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAF 855
Query: 634 FNKLMKY 640
L Y
Sbjct: 856 AEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 1e-22
Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
+K I+ N+R Y S ++ + LKI + +++G SG GKSTL RL +
Sbjct: 1 MKFAIETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
Query: 456 -----NGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT 507
G++ + G +I ++DP+ +R ++G V Q P F TIY+N+ GV + V
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 508 KSDIIH-----AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ A K+A + V D N + + LSGGQ+QR+ IARAL K KI
Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPS-------NLSGGQRQRLVIARALAMKPKI 170
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-LSTIRKSNQICVLDKGKIVEIG 621
LL+DE T+ +D ++ + +L + T++ + H R S+ + L GK++E+G
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
Query: 622 SYAHLIKNP 630
+ +NP
Sbjct: 231 PTRKVFENP 239
|
Length = 253 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 1e-22
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
ID + SY D V++NDLS I G ++G +G+GKST+A +LL + P GKI
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENIL-YGVNDSSSVTKSDIIHAAKE 517
+ G + R IG V Q L T+ EN+L +G + + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFG--------RYFGMSTREI 112
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
+++F ++ R +LSGG K+R+ +ARALI ++L+LDE T+ LD
Sbjct: 113 EAVIPSLLEFAR-LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 578 YLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG-KIVE 619
+L+ + L+ GKT+L H + R +++CVL+ G KI E
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 65/245 (26%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 400 IDFNNIRFSYPSRPDA---VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
I N+ + Y S ++ + L+D++L+++ G ++G +GSGKST+A + L P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 457 GKILIDGVDIKELDPMY-LRSQIGSVSQEP--TLFSGTIYENILYGVND---SSSVTKSD 510
GK+ +DG+D + + ++ +R++ G V Q P + + + E++ +G + +
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ + K+ Y +++ +LSGGQKQR+AIA L + + ++ DE T+
Sbjct: 125 VDESLKKVGMY----EYRR-------HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 571 ALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
LD V + I++L G T++ I H + ++++I V+D GK+V G+ + K
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233
Query: 629 NPNSM 633
M
Sbjct: 234 EVEMM 238
|
Length = 280 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 29/224 (12%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+LN++SL ++SG +++G SG GKSTLA LL+ L P G + G + +L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN- 80
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------DIIHAAKEANAYG 522
R+Q + ++ + ++++ + VN +V + + A + A A
Sbjct: 81 ---RAQRKAFRRDIQM----VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARA-S 132
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
++ + D+++ +R LSGGQ QR+ +ARAL + K+L+LDEA S LD ++Q+
Sbjct: 133 EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQA 188
Query: 583 AIEKLIE------GKTVLTIAHRLSTIRKSNQIC-VLDKGKIVE 619
+ +L++ G L I H L + + Q V+D G+IVE
Sbjct: 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-R 475
IL +SL++ G +T V+G +G GK+TL L+ L ++G I +DG DI +L P R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG-FVI--DFKNGF 531
+ I V Q +F T+ EN+L G+ + I Y F + +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGL-AALPRRSRKIP-----DEIYELFPVLKEMLG-- 126
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-- 589
RG LSGGQ+Q++AIARAL+ + K+LLLDE T + + I +L
Sbjct: 127 -----RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
G +L + L R+ +++ V+++G++V G+ L
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-22
Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 45/261 (17%)
Query: 400 IDFNNIRFSY----PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
I F+N+ ++Y P A ++D++ + + G +++G +GSGKSTL + L P
Sbjct: 3 IRFDNVSYTYQKGTPYEHQA--IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 456 NGKILIDGVDI------KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVT 507
G + +D + I K + P +R +IG V Q E LF T+ I++G +
Sbjct: 61 TGTVTVDDITITHKTKDKYIRP--VRKRIGMVFQFPESQLFEDTVEREIIFGPKN----F 114
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSK 561
K ++ E Y + GF R +M +SGGQ ++IAI L
Sbjct: 115 KMNL----DEVKNYAHRLLMDLGF-----SRDVMSQSPFQMSGGQMRKIAIVSILAMNPD 165
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618
I++LDE T+ LD +++ V ++ L E KT++ ++H ++ + R ++++ V+ +G IV
Sbjct: 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
Query: 619 EIGSYAHLIKNPNSMFNKLMK 639
S P +F K
Sbjct: 226 SQTS-------PKELFKDKKK 239
|
Length = 286 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 2e-22
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 11/221 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
+ND+S+ I+ ++T++IG SG GKST + R+ D G+IL +G++I ++
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +IG V Q+P F +IY NI + + + KS + +E+ + D
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---E 153
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
+ + LSGGQ+QR+ IAR L K +LLLDE SALD + ++ I +L E
Sbjct: 154 VKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE 213
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+++ + H + +R S++ G +VE + +P
Sbjct: 214 YSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-22
Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 29/239 (12%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ SY R ++ND+SL++ SG + ++G +G+GK+T +++ L P +GKIL+D
Sbjct: 9 NLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 464 VDIKELDPMYLRSQ--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA 520
DI +L PM+ R++ IG + QE ++F T+ +NI+ + + + D+ A ++
Sbjct: 66 EDITKL-PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL----EIREKDLKKAERKEEL 120
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ +F + + LSGG+++R+ IARAL K +LLDE + +D +
Sbjct: 121 DALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP----IA 174
Query: 581 QSAIEKLIE-----GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKNP 630
I+++I+ G VL H +R++ IC ++ GK++ GS ++ N
Sbjct: 175 VIDIQRIIKHLKDRGIGVLITDH---NVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 31/252 (12%)
Query: 400 IDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451
+D ++ ++P R V++ ++S ++ G ++G SGSGKST + LLRL
Sbjct: 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335
Query: 452 YDPQNGKILIDGVDIKELDP---MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508
+ Q G+I DG + L+ + +R +I V Q+P S N+L + + V +
Sbjct: 336 INSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN-SSLNPRLNVLQIIEEGLRVHQ 393
Query: 509 SDIIHAAKEANAYGFVIDFKN--GFDTIVGER-GIMLSGGQKQRIAIARALIKKSKILLL 565
+ A +E VI G D R SGGQ+QRIAIARALI K +++L
Sbjct: 394 PTLSAAQREQQ----VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIIL 449
Query: 566 DEATSALDAENEYLVQSAIEKLIEGK------TVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DE TS+LD VQ+ I L++ L I+H L +R +Q+ VL +G++V
Sbjct: 450 DEPTSSLDKT----VQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505
Query: 619 EIGSYAHLIKNP 630
E G + P
Sbjct: 506 EQGDCERVFAAP 517
|
Length = 529 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 59/252 (23%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN------GKILIDGVDIK 467
+ +S I++G +++G SGSGKS A+ +L L P G IL DG D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAAAHPSGSILFDGEDLL 80
Query: 468 ELDPMYLR----SQIGSVSQEPTLFSG-----TIYENILYGVNDSSSVTKSD-------- 510
LR ++IG + QEP + TI + + + ++++
Sbjct: 81 AASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALEL 138
Query: 511 -----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
I K +AY LSGGQ+QR+ IA AL + +L+
Sbjct: 139 LELVGIPEPEKRLDAYPH-----------------ELSGGQRQRVMIAMALANEPDLLIA 181
Query: 566 DEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DE T+ALD VQ+ I L++ G +L I H L +RK ++++ V+ G+IV
Sbjct: 182 DEPTTALDVT----VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237
Query: 619 EIGSYAHLIKNP 630
E G+ L P
Sbjct: 238 ETGTTETLFAAP 249
|
Length = 534 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 4e-22
Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 32/259 (12%)
Query: 381 EPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
+P I G FF H K ++ NI +P R +T++IG SG G
Sbjct: 2 DPKIKIRGVNFFYH--KHQV-LKNINMDFPER----------------QITAIIGPSGCG 42
Query: 441 KSTLAMLLLRLYDPQNG-----KILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIY 493
KSTL L R+ D +G +L+D +I LD + LR ++G V Q+P F +I+
Sbjct: 43 KSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF 102
Query: 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAI 552
+N+ +G + +S + +++ + D K+ + G+ LSGGQ+QR+ I
Sbjct: 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLH----KSGLALSGGQQQRLCI 158
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICV 611
AR L + +++L+DE SALD + ++ +++L + T+ + H + R S+
Sbjct: 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGF 218
Query: 612 LDKGKIVEIGSYAHLIKNP 630
L G +VE G + P
Sbjct: 219 LLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ Y R ++N +SL ++ G + ++G +G+GK+T +++ L P +GKIL+DG
Sbjct: 5 NLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61
Query: 464 VDIKELDPMYLRSQ--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA 520
DI +L PM+ R++ IG + QE ++F T+ ENIL V + ++K + +E
Sbjct: 62 QDITKL-PMHKRARLGIGYLPQEASIFRKLTVEENIL-AVLEIRGLSKKEREEKLEE--- 116
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ +F + + LSGG+++R+ IARAL K LLLDE + +D +
Sbjct: 117 --LLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 581 QSAIEKLIE-GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKNP 630
Q I+ L + G VL H +R++ I ++ +GK++ G+ + N
Sbjct: 173 QKIIKILKDRGIGVLITDH---NVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 6e-22
Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 16/227 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ F Y A L LSL I GS T+++G +G+GKSTL + L +Y PQ G++
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHAAK 516
+ G ++ + ++RS++G V Q+P +FS T+++++ +G VN + K ++ +
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN--MGLDKDEVERRVE 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA + DF++ + LS GQK+R+AIA L +++LDE + LD
Sbjct: 121 EALKAVRMWDFRD-------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 577 EYLVQSAIEKL-IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+ + +++L +GKTV+ H + ++Q+ VL +G+++ G
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (240), Expect = 7e-22
Identities = 76/249 (30%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQ 455
+ N F Y +R V L+DL+L I+ +T+ IG SG GKST L +L D
Sbjct: 82 EIRNFNFWYMNRTKHV-LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 456 NGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDSSSVTK 508
G+I G + K++ + LR++IG V Q+PT F +I++N+ YG +ND + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
K + + K+ D + G LSGGQ+QR+ IARA+ + ++LL+DE
Sbjct: 201 I----VEKSLKSAALWDEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
TSALD ++ I +L + +++ + H ++ ++ S++ +G I E G +
Sbjct: 253 TSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
Query: 628 KNPNSMFNK 636
+P + K
Sbjct: 313 IHPKNKRTK 321
|
Length = 329 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 9e-22
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L+ +SL ++ G + +++G +G+GKSTL L P +G++ ++GV + P L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 477 QIGSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ Q +L F T+ E + G + S + A +A A +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR- 134
Query: 535 VGERGIMLSGGQKQRIAIARAL------IKKSKILLLDEATSALD-AENEYLVQSAIEKL 587
LSGG++QR+ +AR L + + L LDE TSALD A + ++ A +
Sbjct: 135 ------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 588 IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
EG VL + H L+ + +++I +L +G+++ GS
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL---DPMY 473
+L +SL I G + +++GSSGSGKSTL LL L +P +G++L +G + +L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 474 LRSQ-IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
LR++ +G + Q L T EN+ + K + A + A + ++
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAM----PLLIGKKSVKEAKERAYEMLEKVGLEHRI 135
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEG 590
+ E LSGG++QR+AIARAL+ + ++L DE T LD N ++ + +L E
Sbjct: 136 NHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 591 KTVLTIA-HRLSTIRKSNQICVLDKGKIVE 619
T + H L +K +++ + G++
Sbjct: 192 NTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 1e-21
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 25/237 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
+ D + I+ +T IG SG GKST+ L R+ D G + G D+ K +D
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGV--NDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P+ +R IG V Q+P FS +I++N+ +G+ N + HA + A + V D
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-- 141
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ G+ LSGGQ+QR+ IARA+ + ++LLLDE SALD V+ + +L
Sbjct: 142 -----KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK 196
Query: 589 EGKTVLTIAHRLSTIRKSNQICVL---------DKGKIVEIGSYAHLIKNPNSMFNK 636
+ T+ + H + + G +VE+G A + +NP
Sbjct: 197 KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTS 253
|
Length = 261 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 67/213 (31%), Positives = 97/213 (45%), Gaps = 46/213 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL 474
IL ++L I+ G + +++G +GSGKSTLA ++ Y+ G+IL G DI +L P
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL-PPEE 73
Query: 475 RSQ--IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
R++ I Q P G + L VN GF
Sbjct: 74 RARLGIFLAFQYPPEIPGVKNADFLRYVN-------------------EGF--------- 105
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGK 591
SGG+K+R I + L+ + + +LDE S LD + LV I KL EGK
Sbjct: 106 ----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 592 TVLTIAH--RLSTIRKSNQICVLDKGKIVEIGS 622
+VL I H RL K +++ VL G+IV+ G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + IL DLS ++ G +++G +G+GK+TL LL + P +G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 460 LIDGVDIKELDPMY-LRSQIGSVS---QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
+ G + + ++ LR +IG VS E T+ + +L G S + + D+ A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDL-TAE 147
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
A A + G + LS G+++R+ IARAL+K ++L+LDE LD
Sbjct: 148 DLAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 576 N-EYLVQSAIEKLI--EGKTVLTIAHRLSTIRKS-NQICVLDKGKIV 618
E L+ E +L + H I +L +G++V
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 22/217 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D ++ ++ K++ G + +G +G+GK+T +L L P +G + G D+ +P
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R IG V Q ++ T EN+ LYG+ + + + +
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL--PKDEAEERAEELLE-------LFEL 114
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D VG SGG ++R+ IA +LI + +L LDE T+ LD + I L
Sbjct: 115 GEAADRPVGT----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E G T+L H + K ++I ++D G+I+ G+
Sbjct: 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 2e-21
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKST-LAMLLLRLYDPQN----GKILIDGVDI--KELD 470
L +++L I +T++IG SG GKST + L L + N G++ +G +I ++D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVIDFKN 529
+ LR IG V Q+ F +I++N+ YG + K + +++ + K+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
T + + LSGGQ+QR+ IARAL +LL+DE TSALD + ++ I KL E
Sbjct: 148 RLHT----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 590 GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
T++ + H + R S+Q G++VE + NP+
Sbjct: 204 KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
D +L+ + L ++ GS+ ++G +G+GK+TL + P G +L+ G D++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 471 PMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVI 525
++ SV Q+ +L F + + + G S T++D A + A V
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR-AAVERAMERTGVA 130
Query: 526 DFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
F +R + LSGG++QR+ +ARAL + + +LLLDE T++LD ++ +
Sbjct: 131 QF--------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182
Query: 585 EKLIE-GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+L++ GKT + H L R +++ +L G++ G
Sbjct: 183 RRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-21
Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELDPMYLR 475
D + +T++ G SGSGK+TL L+ L P G+I+++G + K + +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+IG V QE LF ++ N+ YG+ + I + VI+ G +
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARP--SERRISFER-------VIELL-GIGHL 124
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKT 592
+G LSGG+KQR+AI RAL+ ++LL+DE +ALD +Y + +E+L G
Sbjct: 125 LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP 184
Query: 593 VLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L ++H L + R ++++ VL+ G++ G A + +P+
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 3e-21
Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 29/249 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I ++ F Y + + + +S+ I +T++IG SG GKST L R+ + + G +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 460 LIDG-VDI-------KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD- 510
++G VD ++ LR QIG V Q P F +IYEN+ YGV S+ + ++D
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 511 --IIHAA-KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
I+ +A K A + V D N + + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 124 DEIVESALKGAALWQEVKDKLN-------KSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 568 ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL---DK---GKIVEIG 621
SALD V+ I L T+ + H + + + D+ G++VE G
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236
Query: 622 SYAHLIKNP 630
+ NP
Sbjct: 237 VTTQIFSNP 245
|
Length = 259 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 5e-21
Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 29/250 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--- 456
I NN+ F Y ++ IL +S++I +T++IG SG GKST L R+ + ++
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 457 --GKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND---SSSVTKS 509
G++ +I E ++ LR Q+ V +P LF ++Y+N+ YGV +
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 510 DIIHAA-KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
DI+ +A K+A+ + + K+ + + + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 125 DIVESALKDADLWD---EIKHK----IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 569 TSALDAENEYLVQSAIE--KLIEGKTVLTIAHRLSTIRKSNQICVLDKG------KIVEI 620
LD V+S I+ +L T++ ++H L + + + KG ++VE
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237
Query: 621 GSYAHLIKNP 630
G + +P
Sbjct: 238 GLTKKIFNSP 247
|
Length = 261 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 6e-21
Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 41/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ NI+ S+ +LND+SL I SG M +++G SGSGK+TL ++ L +G I
Sbjct: 3 IEIANIKKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 460 LIDGVDIKELDPMYLRS-QIGSVSQEPTLFSG-TIYENILYGVN-------DSSSVTKS- 509
G D+ ++ R ++G V Q LF T+++NI +G+ +++ K+
Sbjct: 60 RFHGTDVSR---LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK 116
Query: 510 -----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+++ A A+ Y LSGGQKQR+A+ARAL + +ILL
Sbjct: 117 VTQLLEMVQLAHLADRYP-----------------AQLSGGQKQRVALARALAVEPQILL 159
Query: 565 LDEATSALDAENEYLVQSAIEKLIEG---KTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
LDE ALDA+ ++ + +L E +V + + ++++ V+ +G I + G
Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
Query: 622 SYAHLIKNPNSMF 634
+ + + P + F
Sbjct: 220 TPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 6e-21
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D + +S +++ G + ++G +G+GK+T +L L P +G+ + G D+ +P
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE 70
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R +IG V Q+ ++ T +EN+ LYGV + + I E + +++
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGV--PGAERRERI----DELLDFVGLLEA 124
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D +V SGG ++R+ IAR+L+ + ++L LDE T LD + V IEKL
Sbjct: 125 A---DRLVKT----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177
Query: 588 IE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E G T+L H + + +++ ++D G+I+ G+
Sbjct: 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 9e-21
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L D+ LKI + + + IG SG GKSTL R+ D G++L +I +++
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
+ LR Q+G V Q P F +IYENI + N + + + A + V D
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-- 153
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ E+G LSGGQ+QR+ IARA+ K +LL+DE SALD + V+ +L
Sbjct: 154 -----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK 208
Query: 589 EGKTVLTIAHRLSTIRKSNQICVL----------DKGKIVEIGSYAHLIKNPNS 632
E T++ + H + + +GK+VE + +P +
Sbjct: 209 EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262
|
Length = 274 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-20
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ +IR SYPS + V +L +SL I +G M +++G+SGSGKSTL +L L P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ G D+ LD L R G + Q L S N + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ-----NVEVPAVYAGLERK 119
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+ A + G + V + LSGGQ+QR++IARAL+ +++L DE T ALD+
Sbjct: 120 QRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 575 ENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
+ V + + +L + G TV+ + H ++ ++ + G+IV
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 1e-20
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 25/230 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
LN++++KI S+T++IG SG GKST L R+ D G ++ +G +I D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID---- 526
+ LR +IG V Q P F +IY+NI YG IH K+ +++
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPK----------IHGTKDKKKLDEIVEQSLK 132
Query: 527 ---FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
N + + LSGGQ+QR+ IAR L + ++L+DE TSALD + ++
Sbjct: 133 KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 584 IEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
I L E T++ + H + R S++ G I E S L NP +
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN 242
|
Length = 254 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 70/202 (34%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + Y R +LN L L I +G +V+G SG GKSTL LL L P G++L
Sbjct: 16 NAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
+ E R + Q+ L + +N+ G+ K AA +A A
Sbjct: 73 TAPLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGL-------KGQWRDAALQALA- 119
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
G E LSGGQKQR+A+ARALI + +LLLDE ALDA +Q
Sbjct: 120 ------AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 582 SAIEKLIE--GKTVLTIAHRLS 601
IE L + G TVL + H +S
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-20
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKELDPM 472
L +++L I +T++IG SG GKST L R+ + GKIL +I D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI--FDKS 97
Query: 473 Y----LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--D 526
Y LR+ +G V Q+P F +IY+N+ YG + + E + G I +
Sbjct: 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK-IHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
K+ LSGGQ+QR+ IAR L + ++L+DE TSALD + V+ +++
Sbjct: 157 LKDRLHD----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 587 LIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
L + +++ + H + R S++ G + E + NP
Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-20
Identities = 65/246 (26%), Positives = 124/246 (50%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++Y A L +++ I+ G +T+++G +G+GKSTL L + P +G+I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 460 LIDG--VDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
L DG +D M LR +G V Q+P LFS ++Y+++ +G + + + ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN-LKLPEDEVRKRV 122
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-- 573
A + G + + + LS GQK+R+AIA L+ + K+L+LDE T+ LD
Sbjct: 123 DNALK-------RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
Query: 574 --AENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630
+E L+ ++L G T++ H + + + + V+ +G+++ G NP
Sbjct: 176 GVSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG-------NP 226
Query: 631 NSMFNK 636
+F +
Sbjct: 227 KEVFAE 232
|
Length = 283 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 35/241 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
IDF N+ Y D ++++ LS +Q G ++G +G+GK+T +LL L P G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENIL-----YGVNDSSSVTKSDI 511
+ G + + R ++G V Q L F T+ EN+L +G++
Sbjct: 65 SLCGEPVPSRAR-HARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLS---------- 111
Query: 512 IHAAKEANAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
AA +++F +N D VGE LSGG K+R+ +ARAL+ +L+LDE
Sbjct: 112 --AAAARALVPPLLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEP 165
Query: 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626
T+ LD + +L+ + L+ GKT+L H + R +++CV+++G+ + G+ L
Sbjct: 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
Query: 627 I 627
I
Sbjct: 226 I 226
|
Length = 306 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-20
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---ELDPMY 473
+L D++L+I G + + G SGSGK+TL L+ L Q G + + G ++ E + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 474 LRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAK---EANAYGFVIDFKN 529
LR IG + Q L T +N+ + +++ + A+ EA G +D+
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI- 588
LSGGQKQR+AIARAL+ + K++L DE T+ALD+++ V ++KL
Sbjct: 140 H----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 589 -EGKTVLTIAH--RLSTIRKSNQICVLDKGKIV 618
+G T+L + H R+ + +++I ++ GK++
Sbjct: 190 EQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 5e-20
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----YDPQ 455
++ N+ R +L+D+SL ++ G + +++G +G+GKST LLR P
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKST----LLRALSGELSPD 55
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSD--II 512
+G++ ++G + + P L + + Q +L F T+ E + G D ++
Sbjct: 56 SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALI------KKSKILLL 565
AA + R LSGG++QR+ +AR L + LLL
Sbjct: 116 AAALAQVD---LAHLAG--------RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164
Query: 566 DEATSALD-AENEYLVQSAIEKLIE-GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
DE TSALD A ++++ A + E G V+ + H L+ R +++I +L +G++V G+
Sbjct: 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 6e-20
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 24/249 (9%)
Query: 399 EIDFNNIRFSY-PSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+I F + Y P L D+++ I SGS ++IG +GSGKSTL L L P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 457 GKILI------DGVDIKELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTK 508
G + I G K+L P LR ++G V Q E LF T+ ++I +G + V++
Sbjct: 62 GTVTIGERVITAGKKNKKLKP--LRKKVGIVFQFPEHQLFEETVEKDICFGPMN-FGVSE 118
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDE 567
D A+E V G + R LSGGQ +R+AIA L + ++L+LDE
Sbjct: 119 EDAKQKARE--MIELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624
T+ LD + + KL + G T + + H + R ++QI V+ KG + G+
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 625 HLIKNPNSM 633
+ +P+ +
Sbjct: 232 EIFADPDEL 240
|
Length = 290 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 9e-20
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
I++ + + GS+T ++G +GSGKSTL LL P G + + GVD+ L
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 477 QIGSVSQE-PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
++ V Q+ T T+ + + G S+ D H A + + + D +
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL 594
LSGG++QR+ +ARAL ++ K+LLLDE T+ LD + + + +L G TV+
Sbjct: 136 S----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 595 TIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLI 627
H L+ + + VLD G++V G ++
Sbjct: 192 AALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 9e-20
Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 378 MEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSS 437
M+ E T F + I N+ P +L++L+ +++ G + G S
Sbjct: 371 MDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGES 428
Query: 438 GSGKSTLAMLLLRLYDPQNGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496
G+GK++L L L+ +G+I + + ++L Q P L GT+ E +
Sbjct: 429 GAGKTSLLRALAGLWPWGSGRISMPADSAL-----LFL-------PQRPYLPQGTLREAL 476
Query: 497 LYGVNDSSSVTKSDIIHAAKEAN--AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
Y N + + ++++ + +D ++ +D + LSGG++QR+A AR
Sbjct: 477 CYP-NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV-------LSGGEQQRLAFAR 528
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
L+ K K + LDEATSALD E E + +++ + TV+++ HR + ++
Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQL---- 584
Query: 615 GKIVEIGSYAHLIKNP 630
++++ +L
Sbjct: 585 -ELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (221), Expect = 9e-20
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI-KELD 470
+L+ +S+ + ++TS++G +GSGK+T L R+ D +G +L+ G I D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ R ++G + Q P F +I +N+L GV V + + A+ A + +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ---ARLTEVGLWDA 152
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
+ + LSGGQ+Q + +AR L ++LLLDE TSALD ++ I L +
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212
Query: 591 KTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
TV+ + H L+ R S++ + G++VE G L +P
Sbjct: 213 LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
|
Length = 276 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 21/200 (10%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+++ Y +P L D++L ++SG + V+G SG GK+TL L+ Q+G I +D
Sbjct: 5 SHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
G ++ P R G V Q L + +N+ +G+ + V K + A +
Sbjct: 62 GKPVE--GPGAER---GVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLK- 114
Query: 522 GFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ + G +R I LSGGQ+QR+ IARAL ++LLLDE ALDA +
Sbjct: 115 --KVGLE-GA----EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
Query: 581 QSAIEKLIE--GKTVLTIAH 598
Q+ + KL + GK VL I H
Sbjct: 168 QTLLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-19
Identities = 53/225 (23%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ + L+D+S ++ G + ++G +G+GK+T ++L + P +G++
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L DG + R++IG + +E L+ + + ++Y + + K + A +
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVY-LAQLKGLKKEE---ARRRI 109
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ + ++ + V E LS G +Q++ A+I ++L+LDE S LD N
Sbjct: 110 DEWLERLELSEYANKRVEE----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVE 165
Query: 579 LVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
L++ I +L GKTV+ H++ + +++ +L+KG+ V G
Sbjct: 166 LLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-19
Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++L IQ G S+IG SG GKSTL L+ L P +G ++++G I E P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 478 IGSVSQEPTLFSG-TIYENILYGVN----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
V Q +L T+ ENI V+ D S + I+ ++ D
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIA------LVGLTEAAD 109
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
G+ LSGG KQR+AIARAL + K+LLLDE ALDA +Q + ++ E
Sbjct: 110 KRPGQ----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIG 621
TVL + H + + S+++ +L G IG
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-19
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDP- 471
+L ++SL + +G ++ G SG+GKSTL L Y P +G+IL+ VD+ + P
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 472 --MYLRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
+ +R + IG VSQ + ++ V+ V + + A +
Sbjct: 83 EVLEVRRKTIGYVSQ---------FLRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 529 NGFDTIVGERGIML-----SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ + ER L SGG++QR+ IAR I ILLLDE T++LDA N +V
Sbjct: 134 ARLN--IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 584 I-EKLIEGKTVLTIAH 598
I E G ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-19
Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN----GKILIDGVDIKELDPM 472
+L ++S + G + +V+GSSG+GK+TL M L P+ G +L++G+ I + M
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPI-DAKEM 97
Query: 473 YLRSQIGSVSQEPTLFSG--TIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVID-- 526
S + Q+ LF T+ E++++ + VTK + E V+
Sbjct: 98 RAIS---AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE------VLQAL 148
Query: 527 -FKNGFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ +T +G G + LSGG+++R+A A L+ +L DE TS LD+ Y V
Sbjct: 149 GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 584 IEKLIE-GKTVLTIAHRLST--IRKSNQICVLDKGKIVEIGSYAHLIK 628
++ L + GKT++ H+ S+ ++I ++ +G++ +GS +
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 73/238 (30%), Positives = 108/238 (45%), Gaps = 47/238 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474
L+ +S ++ G +V+G SG GKSTLA LL + P G++ G D+ + DP L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 475 RSQIGSVSQE------PTLFSGTIYENILYGVNDSSSVTKSDIIHA--AKEANAYGFVID 526
R +I V Q P G I E L S+ + + A AK
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAK---------- 140
Query: 527 FKNGFDTIVGERGI-------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
VG R M SGGQ+QRIAIARAL+ +++ DE SALD
Sbjct: 141 --------VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---- 188
Query: 580 VQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
VQ+ + L+ G + + I+H LS + ++++ V+ G+ VE G+ + NP
Sbjct: 189 VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
|
Length = 327 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 25/246 (10%)
Query: 400 IDFNNIRFSY-PSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I F N+ + Y P P + L+++S +++ GS +++G +GSGKSTL L P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 458 KILIDGVDI------KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKS 509
I I G I K L LR ++ V Q E LF T+ +++ +G +
Sbjct: 63 TITIAGYHITPETGNKNLKK--LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 510 DIIHAAKEANAYGFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
A K G D K+ F+ LSGGQ +R+AIA + + +IL LDE
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFE---------LSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 568 ATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
+ LD E + ++Q + G TV+ + H + + + ++ + VL+ GK+++ S
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
Query: 626 LIKNPN 631
+ +
Sbjct: 232 IFSDKE 237
|
Length = 287 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 36/225 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL 474
IL ++L ++ G + +++G +GSGKSTLA ++ Y+ G+IL DG DI EL P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP-DE 77
Query: 475 RSQ--IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA--NAYGFVIDFKN- 529
R++ I Q P G VT SD + AA A A G + +F
Sbjct: 78 RARAGIFLAFQYPVEIPG---------------VTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 530 --------GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G D ER + SGG+K+R I + L+ + K+ +LDE S LD + +
Sbjct: 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 580 VQSAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
V I L EG+ VL I H RL K +++ VL G+IV+ G
Sbjct: 183 VAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 2e-19
Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
++ SY +P L D+SL I SG + V+G SG GK+TL L+ P G I ++G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVTKSDIIHAAKEANA 520
I+ P R G V Q L + +N+ +G+ + +I A +
Sbjct: 67 RRIE--GPGAER---GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI--AHQMLAL 119
Query: 521 YGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G G + + I LSGG +QR+ IARAL + ++LLLDE ALDA
Sbjct: 120 VGL-----EGAE----HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 580 VQSAIEKLIE--GKTVLTIAH 598
+Q + L + GK VL I H
Sbjct: 171 MQELLLDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-19
Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 53/215 (24%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + P V+L DLS +I+ G + G SG+GKS+L L L+ +G+I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
M + + Q P L GT+ E ++Y +D
Sbjct: 59 G-----------MPEGEDLLFLPQRPYLPLGTLREQLIYPWDD----------------- 90
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+LSGG++QR+A AR L+ K K + LDEATSALD E+E
Sbjct: 91 ---------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
+ +++ G TV+++ HR S + +++ LD
Sbjct: 130 LYQLLKE--LGITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-19
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 64/222 (28%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ I + L+ +SL ++ G + +++G +G+GKSTL +L LY P +G+I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 460 LIDGVDIKELDPMY-LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG ++ P R+ I V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLS--------------------------------- 84
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
VGER Q + IARAL + +++L+LDE T+AL
Sbjct: 85 ----------------VGER---------QMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ I +L +G V+ I+HRL + + ++++ VL G++V
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-19
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 63/254 (24%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ +Y RP +L ++SL + G ++G +G+GKSTL +L +P +G++
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK---------- 508
++G +SQEP L T+ + ++ G + +
Sbjct: 61 TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 509 SDIIHAAKEANAYGFVIDF------------KNGF---DTIVGERGIMLSGGQKQRIAIA 553
E A +D GF D V LSGG ++R+A+A
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALA 165
Query: 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAH-R--LSTIR 604
RAL+++ +LLLDE T+ LD E +IE L + G TV+ ++H R L +
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLE-------SIEWLEDYLKRYPG-TVIVVSHDRYFLDNV- 216
Query: 605 KSNQICVLDKGKIV 618
+ I LD+GK+
Sbjct: 217 -ATHILELDRGKLT 229
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (214), Expect = 9e-19
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 25/237 (10%)
Query: 400 IDFNNIRFSY-PSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I F + ++Y P+ P A L D+ L+++ GS T++IG +GSGKSTL L L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 458 KILIDGVDI------KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS 509
K+ + + + KE+ P +R ++G V Q P LF T+ +++ +G + +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKP--VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 510 DIIHAAKEANAYGFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
AA++ G +F K+ F+ LSGGQ +R+AIA L + ++L+LDE
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSPFE---------LSGGQMRRVAIAGILAMEPEVLVLDE 170
Query: 568 ATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
T+ LD + + E + + G+TV+ + H + + ++ + +L+KG I+ G+
Sbjct: 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-18
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+D+SL ++ G + +G +G+GK+T ++L L P +G+I DG ++ +
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--RR 73
Query: 478 IGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
IG++ + P + T EN+ L G+ E G
Sbjct: 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKK----------RIDEVLDVV-------GL 116
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EG 590
++ S G KQR+ IA AL+ +L+LDE T+ LD + ++ I L +G
Sbjct: 117 KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 591 KTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
TVL +H LS I+K +++I +++KGK++E
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 3e-18
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL---DPMYL 474
L ++ ++ G M + G SG+GKSTL L+ + P GKI G DI L + +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 475 RSQIGSVSQE-PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q+ L T+Y+N+ + + + + DI A ++D F
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAKNFP- 135
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
I LSGG++QR+ IARA++ K +LL DE T LD + I +L E
Sbjct: 136 ------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA----LSEGILRLFEEFNR 185
Query: 590 -GKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618
G TVL H + I R+S ++ L G +
Sbjct: 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 4e-18
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-- 473
V LN++S + + +IG+SGSGKSTL L + G I + + I + +
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 474 --------------LRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHAAK 516
LR ++ V Q P LF TI ++I++G V V KS+ AK
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSE----AK 153
Query: 517 EANAYGFVIDFKNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ + K G D ER LSGGQK+R+AIA L + +IL+ DE T+ LD +
Sbjct: 154 KLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK 210
Query: 576 NEY-LVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E+ ++Q ++ KTV I H + + + ++++ V+DKGKI++ G+
Sbjct: 211 GEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-18
Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 26/223 (11%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
+S ++ G ++IG +GSGKSTLA +L + +P +G+ILI+ + D + +I
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 481 VSQEPT------LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ Q+P L G I + L D + I + G + D N +
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIF--ETLRMVGLLPDHANYYPH- 148
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------ 588
ML+ GQKQR+A+ARALI + KI++ DEA ++LD ++S + L+
Sbjct: 149 ------MLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQLINLMLELQEK 198
Query: 589 EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+G + + + + I+ S+Q+ V+ +G++VE GS A ++ +P
Sbjct: 199 QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 6e-18
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 26/221 (11%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDIKELDP 471
D +L L+L +T ++G++G GKSTL M L L PQ G +L G +D +
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 472 MYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ LR Q+ +V Q+P +F I +I + + + V +++I EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEAL---------- 121
Query: 530 GFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
T+V + LS GQK+R+AIA AL+ +++ LLLDE T+ LD + +
Sbjct: 122 ---TLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 584 IEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
I +++ +G V+ +H + I + S+ + VL +G+I+ G+
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-18
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D VI D++L I G +G SG GKSTL ++ L D +G + I + ++ P
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA- 73
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI---IHAAKEANAYGFVIDFKN 529
+G V Q L+ ++ EN+ +G+ + K +I ++ E ++D
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLK-LAGAKKEEINQRVNQVAEVLQLAHLLD--- 128
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ LSGGQ+QR+AI R L+ + + LLDE S LDA ++ I +L +
Sbjct: 129 -------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 590 --GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
G+T++ + H ++ + +++I VLD G++ ++G L P + F
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229
|
Length = 369 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 6e-18
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 35/244 (14%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ F P R +L+ LSL +G +T +IG +GSGKSTL +L R P G+IL+D
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 463 GVDIKELDPMYLRSQIGSVSQE-PTLFSGTIYENIL------------YGVNDSSSVTKS 509
++ ++ + Q+ P T+ E + +G D V
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKV--- 128
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+EA + ++ K +V LSGG++QR IA + + S+ LLLDE T
Sbjct: 129 ------EEAIS---LVGLKPLAHRLVDS----LSGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 570 SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHL 626
SALD ++ V + + +L + G TV+ + H ++ R + + L G+++ G+ A L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 627 IKNP 630
++
Sbjct: 236 MRGE 239
|
Length = 265 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 37/176 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY 473
IL + L ++ G +++G SGSGKSTL +L L DP +G++ + G + +LD
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 474 LRSQ-IGSVSQE----PTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGF 523
LR++ +G V Q P L T EN+ L G + + S A A G
Sbjct: 85 LRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSADSRAG-----AKALLEAVG- 135
Query: 524 VIDFKNGFDTIVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+G+R LSGG++QR+A+ARA + +L DE T LD
Sbjct: 136 -----------LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
|
Length = 228 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 17/238 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ SY ++ +L+D+SL I G +TS+IG +G+GKSTL ++ RL +G+I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSS--VTKSDIIHAAK 516
IDG+++ L ++ + QE + S T+ + + +G S +TK D
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI-IN 117
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA Y + D + + LSGGQ+QR IA L + + +LLDE + LD ++
Sbjct: 118 EAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ + +L + GKT++ + H ++ S+ I L GK+V+ GS +I+
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 52/230 (22%)
Query: 418 LNDLSLKIQ----SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG---VDIKE-- 468
L DL L + + +T++ G SG+GK++L + L PQ G+I+++G D ++
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 469 -LDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
L P R IG V Q+ LF + N+ YG+ AK A
Sbjct: 70 CLPPEKRR--IGYVFQDARLFPHYKVRGNLRYGM--------------AKSMVAQ----- 108
Query: 527 FKNGFDTIVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
FD IV GI LSGG+KQR+AI RAL+ ++LL+DE ++LD +
Sbjct: 109 ----FDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 578 YLVQSAIEKLIEGKTV----LTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
+ +E+L + + L ++H L I R ++++ VL++GK+ G
Sbjct: 165 RELLPYLERL--AREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 39/235 (16%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ F+Y +V ++L I+ G + +IG +GSGKSTLAMLL LY PQ+G+
Sbjct: 322 TLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI-----------YENILYGVNDSSSVT 507
IL+DG + P R +V + LF + E L + + +
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
D G + + K LS GQK+R+A+ AL ++ ILLLDE
Sbjct: 440 LED-----------GRISNLK-------------LSKGQKKRLALLLALAEERDILLLDE 475
Query: 568 ATSALDAE-NEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
+ D Q + L E GKT+ I+H ++++ + G++ E+
Sbjct: 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
|
Length = 547 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRS 476
L ++L + G + +++G +G+GKSTL +L +++P G I I+ ++ +LD + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK---EANAYGFVIDFKNGFD 532
IG + QE ++ T+ EN+ G + + V +II + A + K D
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLIEGK 591
V LS KQ + IA+ L+ +K++++DE TS+L + E +YL + EG
Sbjct: 141 EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT 196
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623
++ I+H+L+ IR +IC D+ +++ GS
Sbjct: 197 AIVYISHKLAEIR---RIC--DRYTVMKDGSS 223
|
Length = 510 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 111/531 (20%), Positives = 197/531 (37%), Gaps = 96/531 (18%)
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
LL+L V G L Q KLR I+ ++ + L+ ++
Sbjct: 57 LLLLFMVSSLISQLGLTTL----GQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLT 112
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS--LIIVPPVAGLAIVYGK 243
+D +NIS + + + ++ LA +S + ++ V + ++G
Sbjct: 113 SDV--------RNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGG 164
Query: 244 FVR--------KITRNVQDKLANAVQV-----AEERISNIRTVKSFSQEKLEMSHF---N 287
FV R +DKL N Q E ++ R + + + +
Sbjct: 165 FVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH 224
Query: 288 AKMDDLFELAKKEALAKGVFFGFTGL-----------SGNA---IILSVLYYGGVMVSYE 333
+ F L + + G GL S N I+L +L+ ++S
Sbjct: 225 IIRANTFHLLAVN-WSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSA- 282
Query: 334 TITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFS 393
VG L + L A +++ ++ + F
Sbjct: 283 ---VGILPTLLTAQV---------------------AFNKIAKLELAPYKADFPRPQAFP 318
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
K ++ N+RF+Y +A + ++L I+ G + +IG +GSGKSTLAMLL LY
Sbjct: 319 -DWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
PQ+G+IL+DG + R +V + LF +
Sbjct: 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE-----------------G 417
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM---LSGGQKQRIAIARALIKKSKILLLDEATS 570
A ++ + T + + LS GQK+R+A+ AL+++ IL+LDE +
Sbjct: 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 571 ALD-AENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
D A Q + L E GKT+ I+H ++++ + G++ E
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 42/229 (18%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-----PMYL 474
D + + + +T++ G SGSGK++L ++ L P G+I ++G + + + P
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R +IG V Q+ LF T+ N+ YG+ S + FD
Sbjct: 76 R-RIGYVFQDARLFPHYTVRGNLRYGMWKSM-----------------------RAQFDQ 111
Query: 534 IVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+V GI LSGG+KQR+AI RAL+ ++LL+DE ++LD + + +
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 585 EKLI-EGKT-VLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
E+L E +L ++H L + R ++++ VL+ GK+ G + +P
Sbjct: 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-17
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 38/222 (17%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
L ++ G +++G SG+GKSTL L+ P +G + ++G D P R + +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76
Query: 482 SQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540
QE LFS T+ +NI G+N + A +E I + GI
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLN-----AAQREK------------LHAIARQMGI 119
Query: 541 M---------LSGGQKQRIAIARALIKKSKILLLDEATSALDA--ENEYLV---QSAIEK 586
LSGGQ+QR+A+AR L+++ ILLLDE SALD E L Q E+
Sbjct: 120 EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER 179
Query: 587 LIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLI 627
+ T+L ++H L R + + V+ G+I G L+
Sbjct: 180 QL---TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 4e-17
Identities = 132/597 (22%), Positives = 228/597 (38%), Gaps = 86/597 (14%)
Query: 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMT 121
KK+ + ++ L +S +T S ++ +A A+ ++ I + +E
Sbjct: 1 KKAAIGEILALLRSPFPAIT------AFSIALGLAGGLAIIALLASINNAIHEENFLGQG 54
Query: 122 SLS-----LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176
SL LL L+F +GA + Y + I LR L I+ D+
Sbjct: 55 SLFSFGGLCLLALLFRIGA--DIFPAY----AGMHIIANLRIALCEKILGAPIEEIDRRG 108
Query: 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS-----LIIV 231
LI ++ D I+ L ++ +++ F + LA +S + I
Sbjct: 109 AHNLIPLLTHDID--------QINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITIS 160
Query: 232 PPVAGLAIVYGKFVR--KITRNVQDKL--------ANAVQVAEERISNIRTVKSFSQEKL 281
+ G A F+ K +D+ A A E +I IR SF+ +
Sbjct: 161 AIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR-LSFAHGAI 219
Query: 282 EMSHFN-AKMD----DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336
+ S N A + +F A+ FG +++ + M + +I
Sbjct: 220 QESANNIADLHIIEILIFIAAEN--------FGQLLFF---LLIGCALFAAAM--FASID 266
Query: 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER------EPLISTSGGK 390
+S+F+L YI + L + L + AC RL + ER E +S +
Sbjct: 267 AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNV 326
Query: 391 FFSHSLK--GEIDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL 444
K I+ ++ + S A L + L+I G + ++G +G GKSTL
Sbjct: 327 LLLAHDKSVDSIELKDVHMNPKAPEGSEGFA--LGPIDLRIAQGDIVFIVGENGCGKSTL 384
Query: 445 AMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS 504
A L LY PQ G+IL+DG + R ++ + LF I + + +
Sbjct: 385 AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDN 444
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+ + A + GF T LS GQ++R+A+ A ++ ILL
Sbjct: 445 AQQYLQRLEIADKVKIEDG------GFSTTTA-----LSTGQQKRLALICAWLEDRPILL 493
Query: 565 LDEATSALD-AENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
DE + D A + + + L +GKT++ I+H ++QI L G IV+
Sbjct: 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 6e-17
Identities = 55/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
R V+ + LS + +G + G +GSGK+TL L+ L P G I +DG DI + D
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 472 MYLRSQIGSVSQ----EPTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYG 522
+ +P L T+ EN+ G + I AA EA
Sbjct: 72 ---AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELD-------IAAALEAVGLA 118
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ G LS GQK+R+A+AR L+ I +LDE T+ALDA L
Sbjct: 119 PLAHLPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
Query: 583 AIE 585
I
Sbjct: 169 LIR 171
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 6e-17
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL 469
P + +L +++ I G + +++G SG GKSTL ++ Q G++ ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P R QIG + Q+ LF ++ +N+L+ + + + A+ A + +
Sbjct: 73 -PAAQR-QIGILFQDALLFPHLSVGQNLLFAL-------PATLKGNARRNAANAALE--R 121
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+G D + LSGGQ+ R+A+ RAL+ + K LLLDE S LD
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 8e-17
Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 395 SLKGEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
+I +N+ ++Y + + LN+ SL + +T VIG++GSGKST+ L L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 453 DPQNGKILIDG----VDIKELDPMY-LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSS 505
+ G+ ++ ++K++ + LR +IG V Q P LF TI ++I +G
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG------ 115
Query: 506 VTKSDIIHAAKEANAYGFV---IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ + AY V + + V LSGGQK+R+A+A +
Sbjct: 116 ----PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
L+LDE T LD + E + E+L + K ++ + H + + R ++++ V+ +GK++
Sbjct: 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
Query: 620 IGSYAHLIKN 629
IGS + N
Sbjct: 232 IGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 69/246 (28%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
K S SLK I + L D+S ++ G +IG +G+GKSTL LL
Sbjct: 13 YKGGSSSLK----KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-----LYGVNDS 503
+Y P +G + + G L P L T ENI L G++
Sbjct: 69 AGIYPPDSGTVTVRGRVSSLLGLG--------GGFNPEL---TGRENIYLNGRLLGLSRK 117
Query: 504 SSVTKSDIIHAAKEANAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
K D +I+F + D V S G K R+A A A +
Sbjct: 118 EIDEKID------------EIIEFSELGDFIDLPVKT----YSSGMKARLAFAIATALEP 161
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRK-SNQICVLDKG 615
ILL+DE + DA + +L E GKTV+ ++H S+I++ ++ VL+KG
Sbjct: 162 DILLIDEVLAVGDAA---FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKG 218
Query: 616 KIVEIG 621
KI G
Sbjct: 219 KIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-17
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 31/240 (12%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
S+SLK + + L D+S +I G +IG +G+GKSTL L+
Sbjct: 16 YHEKSYSLKKR--LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLI 73
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-LYGVNDSSSVT 507
+Y P +GK+ + G ++ P+ +P L T ENI L G+ +T
Sbjct: 74 AGIYKPTSGKVKVTG----KVAPLI----ELGAGFDPEL---TGRENIYLRGL--ILGLT 120
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
+ +I E + + DF D V S G R+A + A + ILLLDE
Sbjct: 121 RKEIDEKVDEIIEFAELGDFI---DQPVKT----YSSGMYARLAFSVATHVEPDILLLDE 173
Query: 568 ATSALDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
+ DA + +E+L E KT++ ++H L I++ ++ L+ G+I GS
Sbjct: 174 VLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 24/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-VDIKELD-PMYLR 475
LNDLS + G + +IG +G+GK+TL ++ PQ G++L DG D+ +L R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ IG Q+PT+F T+ EN+ +N SV S + + D +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS---------LFARLRAEERRRIDEL 131
Query: 535 VG------ERGIM---LSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAI 584
+ ER + LS GQKQ + I L + K+LLLDE + + DAE E + +
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE-LL 190
Query: 585 EKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+ L ++L + H + +R+ ++++ VL +G ++ GS + +P
Sbjct: 191 KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 1e-16
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 15/234 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKE----L 469
L+ + L I G M +++G SGSGKSTL L L + L+ +E
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
D R+ G + Q+ L + ++ EN+L G S+ ++ +E +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL- 587
G +R LSGGQ+QR+AIARAL++++K++L DE ++LD E+ +V + +
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
Query: 588 -IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+G TV+ H++ +R +I L +G + GS N F+ L +
Sbjct: 200 QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF---DNERFDHLYR 250
|
Length = 262 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+ +L+++I G T++IG +G GKSTL L RL P +G + +DG I+ +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNG 530
+IG ++Q T T+ E + G + K D K A G
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS 140
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--I 588
DT LSGGQ+QR IA L +++ I+LLDE T+ LD ++ + + +L
Sbjct: 141 VDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 589 EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
+G T+ + H L+ R ++ + L +GKIV G+
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-16
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 57/248 (22%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-------YDPQNGKILIDGVDIKEL 469
++ND+SL+I++G +++G SGSGKS A+ +LRL Y P G I G +
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY-PS-GDIRFHGESLLHA 81
Query: 470 DPMYLR----SQIGSVSQEPTLFSGTIY--ENILYGV-----NDSSSVTKSDII------ 512
LR ++I + QEP + ++ E LY V + +I+
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141
Query: 513 ---HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
AAK D+ + LSGG++QR+ IA AL+ + ++L+ DE T
Sbjct: 142 GIRQAAKRLT------DYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPT 184
Query: 570 SALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
+ALD VQ+ I +L+ +L I H LS +RK ++++ V+ G+ VE
Sbjct: 185 TALDVS----VQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 623 YAHLIKNP 630
A L P
Sbjct: 241 AATLFSAP 248
|
Length = 529 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-16
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
D+S +I G + +G++G+GKST +L L P +GK+ ++G D YLRS IG
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IG 100
Query: 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDI--IHAAKEANAYGFVIDFKNGFDTIVGE 537
V ++ DS V K I I + A F+ + + +
Sbjct: 101 LVM---GQKLQLWWDL---PALDSLEVLKL-IYEIPDDEFAERLDFLTEIL-DLEGFLKW 152
Query: 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGK 591
LS GQ+ R +A AL+ K+L LDE T LD Q+ I + +
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NAQANIREFLKEYNEERQA 208
Query: 592 TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
TVL H I +++ ++D+G++V G+ A L +
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 42/242 (17%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS--- 476
+S + G S++G SGSGKST LLRL + Q G+I+ +G I L P L++
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 477 ------QIGSVSQEPTLFSG-TIYE-----NILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
Q S +P G +I E +L G ++ V +A+ +
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+F SGGQ+QRI IARAL K+++ DEA SALD ++ I
Sbjct: 462 HEF---------------SGGQRQRICIARALALNPKVIIADEAVSALDVS----IRGQI 502
Query: 585 EKLI------EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN-K 636
L+ G L I+H ++ + R S+++ V+ G+IVEIG + +NP + K
Sbjct: 503 INLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRK 562
Query: 637 LM 638
LM
Sbjct: 563 LM 564
|
Length = 623 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-16
Identities = 56/221 (25%), Positives = 114/221 (51%), Gaps = 19/221 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
++ D+SL + SG + ++G +G+GK+T +++ + G I+ID DI L P++ R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL-PLHARA 76
Query: 477 Q--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ IG + QE ++F ++Y+N++ + ++ A E + ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-- 134
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKT 592
G LSGG+++R+ IARAL K +LLDE + +D + ++ IE L + G
Sbjct: 135 -----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189
Query: 593 VLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKN 629
VL H +R++ +C ++ +G ++ G+ ++++
Sbjct: 190 VLITDH---NVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ +SY +A LN+++ S +VIG +G+GKSTL + P +G +
Sbjct: 4 IETRDLCYSYSGSKEA--LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VN---DSSSVTK--SDI 511
LI G I + + +R +G V Q P +FS T+ ++I +G +N D +V S
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+H G + + LSGG+K+R+AIA + + ++L+LDE T+
Sbjct: 122 LHML--------------GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
LD + + + L E G TV+ H+L + + ++ I V+DKG+IV G+ +
Sbjct: 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
Query: 629 NPN 631
P+
Sbjct: 228 QPD 230
|
Length = 277 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 57/262 (21%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+ P AV + ++L++ G V+G SG GKST A ++ L +G++ G D+
Sbjct: 28 WQPPKTLKAV--DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85
Query: 467 KELDPMYL---RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII---------HA 514
+ RS I + Q+P L +N +T +II
Sbjct: 86 LGMKDDEWRAVRSDIQMIFQDP-----------LASLN--PRMTIGEIIAEPLRTYHPKL 132
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIM----------LSGGQKQRIAIARALIKKSKILL 564
+++ + K+ ++ + G++ SGGQ QRI IARALI + K+++
Sbjct: 133 SRQ--------EVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184
Query: 565 LDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
DE SALD +Q+ + L++ G +++ IAH L+ ++ S+++ V+ G
Sbjct: 185 CDEPVSALDVS----IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240
Query: 618 VEIGSYAHLIKNPNSMFNK-LM 638
VE+G+Y + NP + K LM
Sbjct: 241 VELGTYDEVYHNPLHPYTKALM 262
|
Length = 331 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 7e-16
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 28/225 (12%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ-I 478
LS ++ G ++IG +GSGKSTLA +L + +P +G++LID + D Y RSQ I
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY-RSQRI 89
Query: 479 GSVSQEPTLF------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+ Q+P+ I + L D + I G + D + +
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIET--LRQVGLLPDHASYYP 147
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI---- 588
ML+ GQKQR+ +ARALI + K+++ DEA ++LD ++S + L+
Sbjct: 148 H-------MLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQ 196
Query: 589 --EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+G + + + L ++ S+Q+ V+ +G++VE GS A ++ +P
Sbjct: 197 EKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476
LNDLSL + G + +IG +G+GK+T+ ++ P G +L G D+ L R+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS----------DIIHAAKEANAYGFVI 525
IG Q+PT+F T++EN+ + SV S D I E I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE------TI 131
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ D + G LS GQKQ + I L++ K+LLLDE + + E ++
Sbjct: 132 GLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
L +V+ + H + +R ++++ VL +G ++ GS + +P
Sbjct: 188 SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 28/230 (12%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-DG---VDIKELDPMYL 474
++ SL I+ G + ++G SGSGKSTL + L G +L+ DG VD+ D L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 475 R----SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
R ++ V Q+ L T+ EN+ +G+ + + K++ E ++
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGL-EMQGMPKAERRKRVDEQLE---LVGLAQ 156
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE-KLI 588
D GE LSGG +QR+ +ARA ++ ILL+DE SALD L+++ ++ +L+
Sbjct: 157 WADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDP----LIRTQLQDELL 208
Query: 589 E-----GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
E KT++ ++H L ++ N+I +++ G+I++ G+ ++ NP +
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
F+ I ++P L+D+S ++G + +++G +G+GKSTL +L Y P G ILI
Sbjct: 7 FDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63
Query: 462 DGVDIKELDPM-YLRSQIGSVSQE----PTLFSGTIYENILYGV--NDSSSVTKSDII-H 513
DG +++ L + + + QE P + T+ EN+ G + V + +
Sbjct: 64 DGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYE 120
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A ++ G ID DT + LS GQ+Q + IA+AL + ++++ DE TS+L
Sbjct: 121 AREQLEHLGVDID----PDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLS 172
Query: 574 A-ENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
A E E L I +L EG+ +L ++HR+ I + I V G+ V
Sbjct: 173 AREIEQLF-RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 35/212 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+N++SL + S+ ++G +G+GKSTL ++ + P +G+I+ DG D L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD---LHK 71
Query: 477 QIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
IGS+ + P L+ T EN+ L G+ DS ++++ ++D N
Sbjct: 72 -IGSLIESPPLYENLTARENLKVHTTLLGLPDS---RIDEVLN----------IVDLTNT 117
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD----AENEYLVQSAIEK 586
+ S G KQR+ IA AL+ K+L+LDE T+ LD E L++S E+
Sbjct: 118 GKKKAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
G TV+ +H LS +++ ++ I ++ +G +
Sbjct: 174 ---GITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-15
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+D + F Y +P +L +S + +G + + GS+G+GK+TL L+ L +P+ G+I
Sbjct: 2 LDVIELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
L + IK+ D + Q+ V P L T+ EN LY ++ S I
Sbjct: 59 LFERQSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVG---ITEL 111
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ +ID+ G +LS GQK+++A+ R + K+K+ LLDE ALD
Sbjct: 112 CRLFSLEHLIDYPCG----------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
Query: 576 NEYLVQSAIEK-LIEGKTVLTIAHRLSTIRKSN 607
+ + + I++ +G VL +H+ + K++
Sbjct: 162 SLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY--- 473
+L+++S I G M +++GSSGSGKSTL LL L P +G ++ +G + +L
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 474 LRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK--EANAYGFVIDFKNG 530
LR+Q +G + Q + ++L +V +I K E N+ + G
Sbjct: 84 LRNQKLGFIYQ---------FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVG 134
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ R LSGG++QR+AIARAL+ +++L DE T LDA N
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
|
Length = 233 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---------- 467
L+++S++I G ++IG +GSGK+T L L P G I D K
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 468 -----ELDPMY---------LRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKSDI 511
+ +R ++G V Q E LF TI ++I++G S V+K +
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPV-SMGVSKEE- 140
Query: 512 IHAAKEANAY----GFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
A K A Y G + ++ F+ LSGGQK+R+A+A L + L+
Sbjct: 141 --AKKRAAKYIELVGLDESYLQRSPFE---------LSGGQKRRVALAGILAMEPDFLVF 189
Query: 566 DEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIG 621
DE T+ LD + + + L +GKT++ + H L + + + + GKI++ G
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----Q 455
I+ NI +++ +SL +Q G + +++G SGSGKS L +
Sbjct: 5 IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 456 NGKILIDGVDIKELDPMYLRSQ-IGSVSQEP--------TLFSGTIYENILYGVNDSSSV 506
G++L+DG K + P LR + I ++ Q P T+ + E L +
Sbjct: 61 AGRVLLDG---KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR-ETCLALGKPADDA 116
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566
T + + A NA ++ +SGG QR+ IA AL+ ++ ++ D
Sbjct: 117 TLTAALEAVGLENA-----------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165
Query: 567 EATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
E T+ LD + Q+ I L+E +L + H + + R ++ + V+ G+IVE
Sbjct: 166 EPTTDLDV----VAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221
Query: 620 IGSYAHLIKNPNS 632
G L P
Sbjct: 222 QGDVETLFNAPKH 234
|
Length = 254 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 9e-15
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 47/231 (20%)
Query: 400 IDFNNI-RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL---LRLYDPQ 455
+ + NI + R IL D S ++ G M V+G GSG STL L
Sbjct: 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV 63
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSDI 511
G I +G+ KE Y +I VS+E PTL T +
Sbjct: 64 EGDIHYNGIPYKEFAEKY-PGEIIYVSEEDVHFPTL-------------------TVRET 103
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A FV RGI SGG+++R++IA AL+ ++ +L D +T
Sbjct: 104 LDFALRCKGNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRG 148
Query: 572 LDAENEYLVQSAIEKL--IEGKTVLTIAHRLS--TIRKSNQICVLDKGKIV 618
LD+ + I + + T ++ S +++ VL +G+ +
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 36/191 (18%)
Query: 418 LNDLSLKIQSGSMTS-----VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472
L + +L+++ GS++ ++G +G GK+T +L + P G I I+ + P
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQ 68
Query: 473 YLRSQIGSVSQEPTLFSGTIYENILYGVND---SSSVTKSDIIHAAKEANAYGFVIDFKN 529
Y+++ + GT+ + +L + + K++I +
Sbjct: 69 YIKAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQ------------- 104
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ I+ LSGG+ QR+AIA L K + I LLDE ++ LD E + I + E
Sbjct: 105 -IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
Query: 590 G--KTVLTIAH 598
KT + H
Sbjct: 164 NNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 48/223 (21%)
Query: 400 IDFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--N 456
+ + N+ ++ P +LN++S ++ G++T+++G SG+GK+TL +L
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
G+ILI+G + LD + RS G V Q+ T+ E + + A
Sbjct: 64 GEILING---RPLDKNFQRS-TGYVEQQDVHSPNLTVREALRF--------------SAL 105
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
RG LS Q++R+ I L K IL LDE TS LD++
Sbjct: 106 L---------------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
Query: 576 NEYLVQSAIEKLIE-GKTVLTIAHRLS--TIRKSNQICVLDKG 615
Y + ++KL + G+ +L H+ S K +++ +L +G
Sbjct: 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 37/218 (16%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVD-----IKEL 469
L+++SLK+++G + S+ G +G+GKSTL +L +Y P G+I+ +G + I++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH-------AAKEANAY 521
+ R+ I + QE L ++ ENI G + +T I+ A K
Sbjct: 80 E----RAGIAIIHQELALVKELSVLENIFLG----NEITPGGIMDYDAMYLRAQKLLAQL 131
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLV 580
I+ T VG L GQ+Q + IA+AL K++++L+LDE T++L ++E L+
Sbjct: 132 KLDINP----ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 581 QSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
I L G + I+H+L+ ++ S+ ICV+ G+
Sbjct: 184 -DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---- 471
+L + + +G + +++G +G+GKSTL ++ + P +G + I G L P
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 472 ---MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+YL V QEP LF ++ ENIL+G+ + + +D
Sbjct: 85 QLGIYL------VPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQLLAALGCQ-LDLDS 136
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQSAIEK 586
G L +Q + I R L++ S+IL+LDE T++L AE E L E
Sbjct: 137 SAG----------SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL 186
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
L +G ++ I+H+L IR+ +++I V+ G I
Sbjct: 187 LAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 50/214 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ S+ R +L+D+SL+++ G + +++G +G+GKSTL ++L L P G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQ----EPTL-FSGTIYENILYGVNDSSSVTKSDIIHA 514
+G LR IG V Q + TL + + + G K DI+ A
Sbjct: 62 KRNG---------KLR--IGYVPQKLYLDTTLPLTVNRFLRLRPGTK------KEDILPA 104
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSAL 572
K A G +ID M LSGG+ QR+ +ARAL+ + ++L+LDE T +
Sbjct: 105 LKRVQA-GHLIDAP------------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
Query: 573 DAENEYLVQSAIEKLIE------GKTVLTIAHRL 600
D Q A+ LI+ VL ++H L
Sbjct: 152 DVNG----QVALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-- 468
R + + +DLS + +G + G +G+GK+TL +L L P G++ G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 469 ----LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
+YL Q G + E T EN+ + S + I A + G
Sbjct: 71 ESYHQALLYLGHQPG-IKTELTAL-----ENLHFWQRFHGSGNAATIWEALAQVGLAGLE 124
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
D VG+ LS GQ++R+A+AR + + + +LDE +ALD E
Sbjct: 125 -------DLPVGQ----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 53/208 (25%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D ++++S ++ G + ++G +G+GK+T ++L L +P G+I +G + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI--- 70
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+++IG + +E L+ T+ + + Y + + + K++I K+ A+ ++
Sbjct: 71 -KNRIGYLPEERGLYPKMTVEDQLKY-LAELKGMPKAEI---QKKLQAWLERLEIVGKKT 125
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGK 591
+ E LS G +Q+I A+I + ++L+LDE S LD N L++ AI +L EG
Sbjct: 126 KKIKE----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 592 TVLTIAHRLSTIRK-SNQICVLDKGKIV 618
T++ +HR+ + + +++ +L KG+ V
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKGQTV 209
|
Length = 300 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-14
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 39/231 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++F N+ Y ++L DLS +I G +++G +G+GKSTL LL P +G +
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQE-PTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ G +K IG Q L T+ E + G D E
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPD------------GDE 416
Query: 518 ANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
++ F GF + +LSGG+K R+ +A+ L++ +LLLDE T+ LD E+
Sbjct: 417 QEVRAYLGRF--GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 577 EYLVQSAIEKLI---EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
A+E+ + EG TVL ++H + + + +I +++ G Y
Sbjct: 475 ----LEALEEALLDFEG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGY 520
|
Length = 530 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 6e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
SR + ++ LS + +G V G +G GK+TL +L L P +G++ +G + E
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 471 PMYLRS--QIGSVSQ-EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
R+ +G + +P L + EN L+ + I A GF
Sbjct: 69 DEPHRNILYLGHLPGLKPEL---SALEN-LHFWAAIHGGAQRTIEDALAAVGLTGFE--- 121
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D + LS GQ++R+A+AR + ++ + +LDE T+ALD L+ +
Sbjct: 122 ----DLPAAQ----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
Query: 588 IE--GKTVLTIAHRL 600
+ G +LT L
Sbjct: 174 LARGGIVLLTTHQDL 188
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
NI F + A + N LS +Q G +++G SGSGKS A+ L+RL + G + D
Sbjct: 19 NIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
Query: 464 ----------VDIKELDPMYLR----SQIGSVSQEPT-----LFSGTIYENILYGVNDSS 504
+++ E +R + + + QEP +F T+ E I +
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF--TVGEQIAESIRLHQ 135
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
++ + + AK + + + TI+ LSGG +QR+ IA AL + +L+
Sbjct: 136 GASREEAMVEAKRMLDQVRIPEAQ----TILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191
Query: 565 LDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
DE T+ALD +Q+ I +LI+ V+ I H + + + ++++ V+ +G+
Sbjct: 192 ADEPTTALDVT----IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247
Query: 618 VEIGSYAHLIKNPNSMFNK 636
VE GS + P + +
Sbjct: 248 VETGSVEQIFHAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 7e-14
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 68/243 (27%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVI------------------------LNDLSLKIQSGSM- 430
LKG + N+R RP+ + L D SL+++ G +
Sbjct: 308 LKGYLPEENMRI----RPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIY 363
Query: 431 ----TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDPMYLRSQIGSVSQE 484
++G +G GK+T A LL + P G++ + + I K P Y++
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK---PQYIKPD------- 412
Query: 485 PTLFSGTIYENILYGVND--SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
+ GT+ + +L + D SS KS+II ++ D V + L
Sbjct: 413 ---YDGTVED-LLRSITDDLGSSYYKSEIIK--------PLQLE--RLLDKNVKD----L 454
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRL 600
SGG+ QR+AIA L + + + LLDE ++ LD E V AI ++ E T L + H +
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Query: 601 STI 603
I
Sbjct: 515 YMI 517
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-14
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS-----VIGSSGSGKSTLAMLLLRLYDPQ 455
+ YP D L+++ G + ++G +G GK+T LL + P
Sbjct: 337 KARDTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD 394
Query: 456 NGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS---SSVTKSDI 511
G D+K P Y+ + GT+ + +L S SS K++I
Sbjct: 395 EGSE----EDLKVSYKPQYISPD----------YDGTVED-LLRSAIRSAFGSSYFKTEI 439
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ ++ + + V E LSGG+ QR+AIA AL +++ + LLDE ++
Sbjct: 440 VK--------PLNLE--DLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAY 485
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI 603
LD E +V I + IE KT L + H + I
Sbjct: 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 41/243 (16%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLYDPQ-------NGKILID 462
+R IL DLSL+I+ G +T+++G +G+GKSTL L L G + ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 463 GVDIKELDPMYL---RSQIGSVSQEPTLFSGTIYENILYG------VNDSSSVTKSDIIH 513
G + +D L R+ + +Q FS E +L G + + +I
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFS--AREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL---------IKKSKILL 564
A G +VG LSGG+ R+ AR L + + LL
Sbjct: 128 QALA----------LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177
Query: 565 LDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
LDE T+ALD +++ + + +L VL I H + R +++I +L G IV G
Sbjct: 178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
Query: 622 SYA 624
+ A
Sbjct: 238 APA 240
|
Length = 272 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 60/225 (26%), Positives = 118/225 (52%), Gaps = 35/225 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDPMY 473
++++SL+++ G + ++G+SG+GK+TL+ ++ + +P +G++ + + VD+ + P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD- 358
Query: 474 LRSQ----IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
R + IG + QE L+ T+ +N+ T++ + E VI K
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNL----------TEAIGLELPDELARMKAVITLK 408
Query: 529 N-GFD-----TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
GFD I+ + LS G++ R+A+A+ LIK+ +I++LDE T +D + V
Sbjct: 409 MVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468
Query: 583 AIEKLIE--GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIG 621
+I K E +T + ++H + + +C ++ GKIV+IG
Sbjct: 469 SILKAREEMEQTFIIVSHDMDFV---LDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 20/194 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
R + + LS + +G V G +GSGK+TL +L L P G++L++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 471 PMYLRS--QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
R +G T S + EN+ + D S + A GF
Sbjct: 69 DSIARGLLYLGHAPGIKTTLS--VLENLRFWHADHSD---EQVEEALARVGLNGFE---- 119
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
D V + LS GQ++R+A+AR L+ + +LDE T+ALD A+
Sbjct: 120 ---DRPVAQ----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 589 E--GKTVLTIAHRL 600
G VLT L
Sbjct: 173 ARGGMVVLTTHQDL 186
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L G + ++G +G+GK+TL +L L P G + + G P IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVP 55
Query: 483 QEPTL---FSGTIYENILYG------------VNDSSSVTKSDIIHAAKEANAYGFVIDF 527
Q F ++ ++ G V D ++V A +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR-----DALRRVGLTELA--- 107
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQSAIEK 586
D VGE LSGGQ+QR+ +ARAL + +LLLDE + LD E L + IE
Sbjct: 108 ----DRPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159
Query: 587 LIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
G +L H L+ + VL G+++ G+ L
Sbjct: 160 AGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 38/228 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL ++L ++ G + +++G +GSGKSTL+ + Y+ +G IL G D+ EL+P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP-DE 73
Query: 475 RSQIGSVSQEPTLFSGTIY-ENILYGVNDSSSVTKSDIIHAAKEA----------NAYGF 523
R++ G LF Y E I V+ + + +A A + F
Sbjct: 74 RARAG-------LFLAFQYPEEI-------PGVSNLEFLRSALNARRSARGEEPLDLLDF 119
Query: 524 VIDFKN-----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ K G D R + SGG+K+R I + + + K+ +LDE S LD +
Sbjct: 120 LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 577 EYLVQSAIEKLIEGKT-VLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+V I +L E L I H RL K + + VL G+IV+ G
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 1e-12
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 57/218 (26%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
S AV D+S ++++G + + G G+G++ LA L L P +G+I +DG +
Sbjct: 11 SVKGAV--RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS 68
Query: 471 PMYLRSQ-IGSVSQEPT---LFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
P I V ++ L ++ ENI
Sbjct: 69 PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS-------------------------- 102
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+LSGG +Q++ +AR L + ++L+LDE T +D + + I
Sbjct: 103 --------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR 148
Query: 586 KLI-EGKTVLTIAHRLST-----IRKSNQICVLDKGKI 617
+L GK VL I S+ + ++I V+ +G+I
Sbjct: 149 ELADAGKAVLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
R + ++ + LS + +G + + G +G+GK++L +L L P G++L G I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 471 PMYLRSQIGSVSQEPTLFSG---------TIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
Y + L+ G T EN+ + + + A
Sbjct: 70 DEYHQD---------LLYLGHQPGIKTELTALENLRFYQRLHGPGD-DEALWEALAQ--- 116
Query: 522 GFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
VG G LS GQ++R+A+AR + ++ + +LDE +A+D +
Sbjct: 117 -------------VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
|
Length = 204 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 35/216 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F NI P+ V++ LS ++ SG+ + G +G GKS+L +L L+ G++
Sbjct: 452 IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL 509
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILY----------GVNDSSSVTKS 509
+ ++ V Q P + GT+ + I+Y G++D
Sbjct: 510 TKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
D + +++ + G+ V + +LSGG+KQRIA+AR K + +LDE T
Sbjct: 559 DNVQ-------LTHILEREGGWS-AVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610
Query: 570 SALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIR 604
SA+ + E Y+ + E I T+ +++HR S +
Sbjct: 611 SAVSVDVEGYMYRLCREFGI---TLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 66/264 (25%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDPQ 455
+ +R SY + + + L + G ++G SG GKSTL LR L
Sbjct: 4 LKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTL----LRMVAGLERIT 57
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI--- 511
+G+I I G + EL+P R I V Q L+ ++ EN+ YG+ + K++I
Sbjct: 58 SGEIWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEER 114
Query: 512 -IHAAK--EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
AA+ E +D K R LSGGQ+QR+A+ RA++++ + L DE
Sbjct: 115 VAEAARILELEPL---LDRK--------PR--ELSGGQRQRVAMGRAIVREPAVFLFDEP 161
Query: 569 TSALDAENEYL-VQSAIE--KL---------------IEGKTVLTIAHRLSTIRKSNQIC 610
S LDA+ L VQ +E +L +E +T+A R+
Sbjct: 162 LSNLDAK---LRVQMRLEIQRLHRRLKTTSLYVTHDQVEA---MTLADRV---------V 206
Query: 611 VLDKGKIVEIGSYAHLIKNPNSMF 634
V++ G +IG+ + + P S F
Sbjct: 207 VMNGGVAEQIGTPVEVYEKPASTF 230
|
Length = 356 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+++S + Q G + +G +G+GKST ++ P +G + + G D+ + +P ++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRN 76
Query: 478 IGSVSQEPTL-----------FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
IG + + L F IY G+ K + + G +
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIY-----GMKGQL--LKQRV---EEMIELVGLRPE 126
Query: 527 -FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
K +G+ LS G +QR+ +A+ALI K+L+LDE T+ LD +++ I+
Sbjct: 127 QHKK-----IGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
+ + KT++ H + + +++ +++KGKIV L
Sbjct: 178 NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-12
Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--GKILIDGVDIKELDPMYL 474
ILN ++ G + +V+G SGSGKSTL L N G IL + ++ L
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQIL 139
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
+ + G V+Q+ L+ T+ E +++ + S+TK + I A+ + + +N
Sbjct: 140 K-RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-- 196
Query: 532 DTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIEKL 587
TI+G RGI SGG+++R++IA ++ +L+LDE TS LDA Y LV +
Sbjct: 197 -TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 588 IEGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIG 621
+GKT++T H+ S+ + + + VL +G+ + G
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 23/214 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474
L+ + L+++ G + G +G+GKSTL +L +Y P +G+I G +K +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDT 75
Query: 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN--- 529
R+ I + QE TL ++ ENI G ++I + KN
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLG---------NEITLPGGRMAYNAMYLRAKNLLR 126
Query: 530 --GFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIE 585
D R + GGQ+Q + IA+AL K++++L+LDE +S+L + E E L+ +
Sbjct: 127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
G + I+H+L+ ++ + ICV+ G+ V
Sbjct: 187 LKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 42/231 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL L+L I G + +++G +GSGKSTL+ ++ Y G IL G I +L+P
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA----------KEANAYGF- 523
R+ +G +F Y + GV++ +D + A E + F
Sbjct: 81 RAHLG-------IFLAFQYPIEIPGVSN------ADFLRLAYNSKRKFQGLPELDPLEFL 127
Query: 524 -VIDFKNGFDTIVGERGIML--------SGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+I+ K +VG L SGG+K+R I + + S++ +LDE S LD
Sbjct: 128 EIINEKL---KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184
Query: 575 ENEYLVQSAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIGS 622
+ ++ I KL+ +++ I H RL K + + V+ GKI++ G
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L D S + GS+ +++G +GSGKSTL L+ +GKI I G ++ L +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 478 IGSVSQEPTLFSGTIYENIL----YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ S+E + E+++ YG K A A +++F++
Sbjct: 83 VPQ-SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH---R 138
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKT 592
+GE LSGGQK+R+ +ARA+ ++ +++LLDE + +D + E + S + +L EGKT
Sbjct: 139 QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKT 194
Query: 593 VLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+L H L ++ + V+ KG ++ G
Sbjct: 195 MLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 22/227 (9%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE- 468
R + D+S ++++G + + G +G+G+S L + L P +G+IL++G D+
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 469 LDPMYLRSQ-IGSVSQE-------PTLFSGTIYEN-ILYGVNDSSSVTKSDIIHAAKEAN 519
L P R + V ++ L ++ EN +L + + A
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDL---SLAENLVLGRHDKKPFSRGGFLDRRAIRKF 382
Query: 520 AYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A + +F D LSGG +Q++ +AR L ++ +L+ + T LD
Sbjct: 383 ARELIEEFDVRAPSPDAPARS----LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 577 -EYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
E++ + +E GK VL I+ L I S++I V+ +G+IV I
Sbjct: 439 IEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP------ 471
+ D+S +++G + + G G+G++ LA L +G+IL+DG ++ P
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 472 --MYL---RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
Y+ R G V I ENI S + I + A A ++
Sbjct: 335 GIAYVPEDRKSEGLVLDMS------IAENITLASLRRFS-RRGLIDRRKERALAERYIRR 387
Query: 527 FK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD--AENEYLVQ 581
+ + +G LSGG +Q++ +AR L K+L+LDE T +D A+ E
Sbjct: 388 LRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE---- 439
Query: 582 SAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
I +LI EGK +L I+ L + S++I V+ +G+IV
Sbjct: 440 --IYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482
|
Length = 500 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 37/174 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY 473
IL + L ++ G ++IG SGSGKSTL +L L D +G++ + G + ++D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 474 LRSQ-IGSVSQE----PTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGF 523
LR++ +G V Q PTL EN+ L G + S A G
Sbjct: 85 LRAKHVGFVFQSFMLIPTL---NALENVELPALLRGESSRQSRN-----GAKALLEQLG- 135
Query: 524 VIDFKNGFDTIVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+G+R LSGG++QR+A+ARA + +L DE T LD
Sbjct: 136 -----------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-11
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 29/205 (14%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG---VDIKELD 470
VILN++ ++ G++T+++G+SG+GK+T LL L + ++ G V+ + LD
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTT---LLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 471 PMYLRSQIGSVSQE----PTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAY-GF 523
+ RS IG V Q+ PT T+ E++ + + SV+K E Y
Sbjct: 832 SSFQRS-IGYVQQQDLHLPTS---TVRESLRFSAYLRQPKSVSK-------SEKMEYVEE 880
Query: 524 VIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL-LDEATSALDAENEYL 579
VI ++ D +VG G L+ Q++R+ I L+ K K+LL LDE TS LD++ +
Sbjct: 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940
Query: 580 VQSAIEKLIE-GKTVLTIAHRLSTI 603
+ + KL + G+ +L H+ S I
Sbjct: 941 ICKLMRKLADHGQAILCTIHQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478
N+++L+++ + S+IG +G+GK+T+ L Y P G IL+ G I+ L P + +++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL-PGHQIARM 80
Query: 479 GSVS--QEPTLF-SGTIYENILYGVNDSSSVTKSDIIH----------AAKEANAYGFVI 525
G V Q LF T+ EN+L V + K+ + A EA
Sbjct: 81 GVVRTFQHVRLFREMTVIENLL--VAQHQQL-KTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ G + L+ GQ++R+ IAR ++ + +IL+LDE + L+ + + I
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 586 KLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+L TVL I H + + S++I V+++G + G+ + NP
Sbjct: 198 ELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI---- 466
S P L++++LK++ S+ +++G +G+GKSTL L +Y +G IL G +I
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 467 -KELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
KE L + I V QE L ++ +N+ G TK + K
Sbjct: 67 SKEA----LENGISMVHQELNLVLQRSVMDNMWLG----RYPTKGMFVDQDKMYR----- 113
Query: 525 IDFKNGFDTI-----VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEY 578
D K FD + + LS Q Q I IA+A +KI+++DE TS+L + E +
Sbjct: 114 -DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNH 172
Query: 579 LVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
L + I KL E G ++ I+H++ I + ++I +L G+ +
Sbjct: 173 LF-TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 9e-11
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 55/208 (26%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + P P IL D+SL G+ V+G +G+GKSTL LR+ +
Sbjct: 8 NRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTL----LRI---------MA 52
Query: 463 GVDIKELDPMYLRSQ---IGSVSQEPTL-FSGTIYENILYGVND-SSSVTKSDIIHA--- 514
GVD KE + + +G + QEP L + T+ EN+ GV + ++ + + I A
Sbjct: 53 GVD-KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 515 ---------AKEANAYGFVIDFKNGF------------------DTIVGERGIMLSGGQK 547
E +ID + + D V + LSGG++
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK----LSGGER 167
Query: 548 QRIAIARALIKKSKILLLDEATSALDAE 575
+R+A+ R L+ K +LLLDE T+ LDAE
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLDAE 195
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+ +L + G + +++G +G+GKST+ +L +Y G IL G ++ P SQ
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK--SSQ 77
Query: 478 ---IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
IG + QE L TI ENI G + + D EA+ ++ + D
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK 137
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLIEGKT 592
+VGE LS G++Q + IA+ L +SK++++DE T AL D E E L + E +G+
Sbjct: 138 LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193
Query: 593 VLTIAHRLSTIRKSNQIC 610
++ I+HRL I +IC
Sbjct: 194 IVYISHRLKEIF---EIC 208
|
Length = 501 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 13/216 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476
L+++SL I G + ++IG++G+GK+TL L +G+I+ DG DI + +R
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
+ V + +FS T+ EN+ G + Y F + +
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMG-----GFFAERDQFQERIKWVYEL---FPRLHERRI 132
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVL 594
G M SGG++Q +AI RAL+ + ++LLLDE + L + IE+L +G T+
Sbjct: 133 QRAGTM-SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF 191
Query: 595 TIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKN 629
+ + ++ +++ VL+ G +V + L+ N
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 34/182 (18%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+D + F+ R + I +++SL + G +T+++G SG GK+TL L+ P +G+I
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 460 LIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
L DG +I + L R ++ + Q LF+ +++N+ Y + + + + ++H+
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP-LLHST 123
Query: 516 K----EANAYGFVIDFKNGFDTIVGERG---IM---LSGGQKQRIAIARALIKKSKILLL 565
EA VG RG +M LSGG +R A+ARA+ + +++
Sbjct: 124 VMMKLEA----------------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 566 DE 567
DE
Sbjct: 168 DE 169
|
Length = 269 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 34/229 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L LS ++++G + ++G +G+GKSTL + + +G I G ++ L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 478 IGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+SQ+ T F+ ++ + D + + + A A +D K G
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDV-----AGALA--LDDKLG------ 120
Query: 537 ERGI-MLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKLI 588
R LSGG+ QR+ +A +++ ++LLLDE ++LD QSA+++L+
Sbjct: 121 -RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLL 175
Query: 589 E-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
G ++ +H L+ T+R +++ +L +GK++ G ++ P
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224
|
Length = 248 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 35/212 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + + ++++DLS K+ G + VIG +G+GKSTL ++ P +G I
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 460 LI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
I + V + +D R + +P + T++E I G D + K ++ +
Sbjct: 380 KIGETVKLAYVDQS--RDAL-----DP---NKTVWEEISGG-LDIIQLGKREV-----PS 423
Query: 519 NAYGFVIDFKNGFD--TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
AY +FK G D VG+ LSGG++ R+ +A+ L +LLLDE T+ LD E
Sbjct: 424 RAYVGRFNFK-GSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 577 EYLVQSAIEKLIEGKTVLTIAH------RLST 602
++ A+ + + I+H R++T
Sbjct: 479 LRALEEALLEF--AGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 56/238 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL----------- 448
I NN SY RP IL++LS ++ G ++G +G+GKSTL L+
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND 317
Query: 449 LRLYDPQNGK---ILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYGVND 502
L L+ + G I DIK IG VS L S ++ IL G D
Sbjct: 318 LTLFGRRRGSGETIW----DIK--------KHIGYVSSSLHLDYRVSTSVRNVILSGFFD 365
Query: 503 SSSVTK--SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIA-IARALIK 558
S + + SD K A + ++ G D + LS GQ QR+A I RAL+K
Sbjct: 366 SIGIYQAVSDRQQ--KLAQQWLDIL----GIDKRTADAPFHSLSWGQ-QRLALIVRALVK 418
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL------------TIAHRLSTI 603
+L+LDE LD N LV+ ++ LI EG+T L I HRL +
Sbjct: 419 HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476
|
Length = 490 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 5e-10
Identities = 61/219 (27%), Positives = 90/219 (41%), Gaps = 77/219 (35%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + P P IL D+SL G+ V+G +G+GKSTL LR+ +
Sbjct: 10 NRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTL----LRI---------MA 54
Query: 463 GVDIKE------LDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAA 515
GVD KE P ++G + QEP L T+ EN+ GV +++ A
Sbjct: 55 GVD-KEFEGEARPAPGI---KVGYLPQEPQLDPEKTVRENVEEGV--------AEVKAAL 102
Query: 516 KE----ANAYGF-----------------VIDFKNGF------------------DTIVG 536
AY +ID + + D V
Sbjct: 103 DRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ LSGG+++R+A+ R L++K +LLLDE T+ LDAE
Sbjct: 163 K----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
|
Length = 556 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHR 599
LSGG+KQR+ +AR L K+ + L DE T LD + LV +A+E+ + G +++ +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 600 LSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
I S++ L+ G+I E G P+ + M+
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEG-------TPDEVVAVFME 262
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474
D+S + G + ++G SGSGKSTL L P +G EL+ L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 475 -----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFK 528
R++ G V Q P + + G N + H A A ++ + +
Sbjct: 80 RRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
I + SGG +QR+ IAR L+ + +++ +DE T LD VQ+ + L+
Sbjct: 137 IDPTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLLDLL 191
Query: 589 EGK------TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
G V+ + H L R + ++ V+ +G++VE G ++ +P + +L+
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 48/280 (17%)
Query: 378 MEREPLISTSGGKFFSHSLKGEIDFNNIRFS-YPSRPDAVILNDLSLKIQSGSMTSVIGS 436
M +PL+S SG S ++ F YP G + ++G
Sbjct: 1 MMDKPLLSVSG---LSKLYGPGKGCRDVSFDLYP-----------------GEVLGIVGE 40
Query: 437 SGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY----------LRSQIGSVSQEPT 486
SGSGK+TL + P G + D + D +Y LR++ G V Q P
Sbjct: 41 SGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRD-LYTMSEAERRRLLRTEWGFVHQNP- 98
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFKNGFDTIVGERGIMLSGG 545
+ + G N + H A A ++ + + D I + SGG
Sbjct: 99 --RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI-DDLPRTFSGG 155
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG------KTVLTIAHR 599
+QR+ IAR L+ + +++ +DE T LD VQ+ + L+ G V+ + H
Sbjct: 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHD 211
Query: 600 LSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
L+ R ++++ V+ +G++VE G ++ +P+ + +L+
Sbjct: 212 LAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 9e-10
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 33/232 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRLYDPQNGKILIDGVDIKELDPM 472
IL + I+ G +T V+G GSG STL A + G I DG+ +E+
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 473 YLRSQIGSVSQEPTLFSGTIYENILYGV------NDSSSVTKSDIIHAAKEANAYGFVID 526
Y + + + T+ E + + N V++ + +A A+ Y
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE--YAKHIADVYMATYG 193
Query: 527 FKNGFDTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ +T VG RG+ SGG+++R++IA A + +KI D AT LD+ A
Sbjct: 194 LSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251
Query: 584 IEKLIEGKTVLTIAHR--LSTIRKSNQ--------ICVLDKGKIVEIGSYAH 625
+ KT I L I + +Q + VL +G + G
Sbjct: 252 L------KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 9e-10
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 55/205 (26%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--------LYDPQNGKILIDGVDIK 467
+L +L+L+I+ G + +V+G SG+GK+TL ++L Y P +GK+ + +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
L P + G V+ L S T D+ +AA E
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKT-----------------GDL-NAAVE---------- 488
Query: 528 KNGFDTIVGERGIM-----------LSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
I+ G+ LS GQK+R +A+ L ++ +LL+DE + LD
Sbjct: 489 ------ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHR 599
V I +L G T++ + HR
Sbjct: 543 AVRVARKISELAREAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++F+ + L DLS+ ++T + G++G GKS+L ++ + P +G I
Sbjct: 2 LSLHQLQFNIEQK----NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+I + Y + IG T++EN+ + +S ++AA
Sbjct: 58 YYKNCNINNIAKPYC-TYIGH--NLGLKLEMTVFENLKFWSEIYNSAE---TLYAA---- 107
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ FK ++ E+ LS G ++ +AIAR + +S + LLDE + L EN L
Sbjct: 108 ----IHYFK--LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161
Query: 580 VQSAIE-KLIEGKTVLTIAHRLSTIRKSNQICVLD 613
+ + I K G VL +H S+I KS QI LD
Sbjct: 162 LNNLIVMKANSGGIVLLSSHLESSI-KSAQILQLD 195
|
Length = 195 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 1e-09
Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 19/234 (8%)
Query: 391 FFSHSLKGEID----FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAM 446
FF L G + N ++ PS AV + L++ +T+ +G +G+GK+T
Sbjct: 917 FFERELPGLVPGVCVKNLVKIFEPSGRPAV--DRLNITFYENQITAFLGHNGAGKTTTLS 974
Query: 447 LLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS 504
+L L P +G +L+ G DI+ LD +R +G Q LF T+ E+IL+
Sbjct: 975 ILTGLLPPTSGTVLVGGKDIETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+ +EA + G E LSGG ++++++A A + +K+++
Sbjct: 1033 --------RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
Query: 565 LDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617
LDE TS +D + + + K G+T++ H + ++I ++ +G++
Sbjct: 1085 LDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-09
Identities = 40/188 (21%), Positives = 61/188 (32%), Gaps = 62/188 (32%)
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G + ++G GSGK+TLA L R P G + +D + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG-------GVIYIDGEDILEEVLDQLLL-- 51
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
IVG + SG
Sbjct: 52 ----------------------------------------------IIVGGKKASGSGEL 65
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE-------KLIEGKTVLTIAHR 599
+ R+A+A A K +L+LDE TS LDAE E L+ E K + TV+ +
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 600 LSTIRKSN 607
+ +
Sbjct: 126 EKDLGPAL 133
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 55/218 (25%)
Query: 398 GEIDF--NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
G+I F N+ + ++ D S ++Q G ++IG +G GK+TL L+L
Sbjct: 316 GKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372
Query: 456 NGKILIDGVDIK---------ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506
+G+I G ++ ELDP T+ +N+ G
Sbjct: 373 SGRIHC-GTKLEVAYFDQHRAELDP-----------------EKTVMDNLAEG------- 407
Query: 507 TKSDIIHAAKEANAYGFVIDF----KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
K +++ + + G++ DF K T V LSGG++ R+ +AR +K S +
Sbjct: 408 -KQEVMVNGRPRHVLGYLQDFLFHPKRAM-TPVK----ALSGGERNRLLLARLFLKPSNL 461
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIAH 598
L+LDE T+ LD E L +E+L++ TVL ++H
Sbjct: 462 LILDEPTNDLDVETLEL----LEELLDSYQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 3e-09
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 43/187 (22%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ S+ R ++++DLS + G + +IG +G+GKSTL ++ P +G I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 460 LI-DGVDIKELDPMYLRSQIGSVSQ-----EPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
I + V ++ V Q +P + T++E I G DII
Sbjct: 382 KIGETV------------KLAYVDQSRDALDP---NKTVWEEISGG---------LDIIK 417
Query: 514 AAK-EANAYGFV--IDFKNGFDT--IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
E + +V +FK G D VG +LSGG++ R+ +A+ L + +LLLDE
Sbjct: 418 VGNREIPSRAYVGRFNFK-GGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Query: 569 TSALDAE 575
T+ LD E
Sbjct: 473 TNDLDVE 479
|
Length = 556 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAH 598
SGG++QR+ IAR I ILLLDE T++LDA N +V I E G ++ I H
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
SR + + L + +G V G +G+GK+TL +L L ++G+I IDG D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 471 PM----YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
YL + + + + + L+G A + + ++
Sbjct: 80 RSRFMAYL-GHLPGLKADLSTLENLHFLCGLHGR------------RAKQMPGSALAIVG 126
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
DT+V + LS GQK+R+A+AR + + + LLDE + LD E LV I
Sbjct: 127 LAGYEDTLVRQ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
Query: 587 LI--EGKTVLT 595
+ G ++T
Sbjct: 183 HLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 54/242 (22%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKIL-----IDGVDIKELDPMYL 474
+S ++ G + ++G SGSGKS ++ ++ L D P G+++ +G D++ +
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP--GRVMAEKLEFNGQDLQRISEKER 83
Query: 475 RSQIGS-VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK------EANAYGFVIDF 527
R+ +G+ V+ I+++ + +N +V I+ A K + ID
Sbjct: 84 RNLVGAEVAM--------IFQDPMTSLNPCYTV-GFQIMEAIKVHQGGNKKTRRQRAIDL 134
Query: 528 KNGFDTIVGERGI------------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
VG I LSGG QR+ IA A+ + K+L+ DE T+ALD
Sbjct: 135 L----NQVG---IPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187
Query: 576 NEYLVQSAIEKLI------EGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAHLIK 628
+Q+ I +L+ E ++ I H L+ + ++ ++I V+ G++VE G + +
Sbjct: 188 ----IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
Query: 629 NP 630
P
Sbjct: 244 AP 245
|
Length = 326 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-09
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG-----KTVLTI 596
LSGG+K R+A+A+ L++ +LLLDE T+ LD E +IE L E TV+ +
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-------SIEALEEALKEYPGTVILV 123
Query: 597 AHRLSTIRK-SNQICVLDKGK 616
+H + + + +I L+ GK
Sbjct: 124 SHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 50/261 (19%)
Query: 400 IDFNNIRFSYPSRPDAVI--LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+D ++R ++ S PD + +NDL+ +++G ++G SGSGKS A L+ L NG
Sbjct: 13 LDVKDLRVTF-STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANG 70
Query: 458 KI----LIDGVDI-----KELDPMYLRS-QIGSVSQEPTLFSGTIYENI---------LY 498
+I +G +I KEL+ + R+ QI + Q+P + S Y + L+
Sbjct: 71 RIGGSATFNGREILNLPEKELNKL--RAEQISMIFQDP-MTSLNPYMRVGEQLMEVLMLH 127
Query: 499 -GVNDSSSVTKS-DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556
G++ + + +S ++ A K A + + + F SGG +QR+ IA AL
Sbjct: 128 KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF-----------SGGMRQRVMIAMAL 176
Query: 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRKS-NQI 609
+ + K+L+ DE T+ALD VQ+ I L+ ++ I H L + +++
Sbjct: 177 LCRPKLLIADEPTTALDVT----VQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232
Query: 610 CVLDKGKIVEIGSYAHLIKNP 630
V+ G+ +E G+ + P
Sbjct: 233 LVMYAGRTMEYGNARDVFYQP 253
|
Length = 330 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+ L +S I+ G + IG +G+GK+T +L L P +G++ + G+
Sbjct: 26 LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP 85
Query: 467 KELDPMYLRSQIGSV-SQEPTLF-------SGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ +LR +IG V Q+ L+ S + I Y + + K
Sbjct: 86 WKRRKKFLR-RIGVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPA---------RFKKRL 134
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++D + DT V + LS GQ+ R IA AL+ + +IL LDE T LD
Sbjct: 135 DELSELLDLEELLDTPVRQ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV---- 186
Query: 579 LVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ Q I ++ G TVL +H + I + ++ V+DKG+++
Sbjct: 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIA 597
I LSGG+ QR+AIA AL++ + L DE ++ LD E AI +L E KT L +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 598 HRLSTI 603
H L+ +
Sbjct: 130 HDLAVL 135
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 42/232 (18%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
LS ++++G + ++G +G+GKSTL A LL P +G I G ++ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 477 QIGSVSQE-PTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ F+ +++ + L+ D A+A V + D +
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQ---------PDKTRTEAVASALNEVAEALGLDDKL 120
Query: 535 VGERGI-MLSGGQKQRIAIARALIK-------KSKILLLDEATSALD-AENEYLVQSAIE 585
R + LSGG+ QR+ +A +++ ++LLLDE ++LD A+ Q+A++
Sbjct: 121 --GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ-----QAALD 173
Query: 586 KLIE-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L+ G V+ +H L+ T+R ++++ +L +GK++ G ++ N
Sbjct: 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 88/250 (35%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F++ F YP P ++ +L+ I S +++G +G GKST+ L+ P +G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 460 L--------------IDGVDIKELDPMY------------LRSQIGSVSQEPTLFSGTIY 493
+DG+D+ +Y LR+ +GS +G +
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG-----VTGNLA 621
Query: 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553
+Y LSGGQK R+A A
Sbjct: 622 LQPMY------------------------------------------TLSGGQKSRVAFA 639
Query: 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT-----VLTIAHRLSTIRKS-N 607
+ KK ILLLDE ++ LD + A+E LI+G VL ++H I S +
Sbjct: 640 KITFKKPHILLLDEPSNHLDLD-------AVEALIQGLVLFQGGVLMVSHDEHLISGSVD 692
Query: 608 QICVLDKGKI 617
++ V+ +GK+
Sbjct: 693 ELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-07
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
LSGG+ QR+AIA AL++ + DE TS LD V I +L EGK VL + H L
Sbjct: 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKE 468
S D IL L+L+++ G + +++G +GSGKSTL+ L Y+ G + G D+ E
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 469 LDP-------MYLRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
L P +++ Q I VS + L + N + + + D +E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL---NAVRSYRGQEPLDRFDFQDLMEE 126
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A K D + + SGG+K+R I + + + ++ +LDE+ S LD +
Sbjct: 127 KIAL-----LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181
Query: 578 YLVQSAIEKLIEGK---TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
+V + L +GK ++T R+ K + + VL +G+IV+ G +
Sbjct: 182 KIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 68/265 (25%), Positives = 116/265 (43%), Gaps = 52/265 (19%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDG 463
+ + IL D S I+ MT ++G SGK+TL + L DP +G+I +G
Sbjct: 170 INLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG 229
Query: 464 VDIKELDPM----YLRSQ----IGSVSQEPTL-FS------GTIYENILYGVNDSSSVTK 508
+ E P Y+ SQ +G ++ + TL FS GT Y+ + ++ + K
Sbjct: 230 YRLNEFVPRKTSAYI-SQNDVHVGVMTVKETLDFSARCQGVGTRYDLL----SELARREK 284
Query: 509 SDIIHAAKEANAY-----------GFVIDFKNGF-------DTIVGE---RGIMLSGGQK 547
I E + + + D+ DTIVG+ RGI SGGQK
Sbjct: 285 DAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI--SGGQK 342
Query: 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-----ST 602
+R+ ++ +K L +DE ++ LD+ Y + +++++ T T+ L T
Sbjct: 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH-LTEATVLMSLLQPAPET 401
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLI 627
+ I +L +G+IV G H++
Sbjct: 402 FDLFDDIILLSEGQIVYQGPRDHIL 426
|
Length = 1470 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 53/238 (22%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVDIKELDPM 472
DA +L++ L I+ ++G +G+GKSTL +L NG++L+D G I E D +
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLI 67
Query: 473 YLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKS------DIIHAAKEANAYGF-- 523
R Q Q+P GT+Y+ + G+ + + K + E N
Sbjct: 68 VARLQ-----QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAK 122
Query: 524 ---VIDFKNG--FDT----IVGERGI-------MLSGGQKQRIAIARALIKKSKILLLDE 567
+D N + ++ + G+ LSGG ++ A+ RAL+ +LLLDE
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 568 ATSALDAENEYLVQSAIEKL------IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
T+ LD E IE L +G + I+H S IR + +I LD+GK+V
Sbjct: 183 PTNHLDIE-------TIEWLEGFLKTFQGSIIF-ISHDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIA 597
LSGG+ QR+ +A+ L K+S + +LDE T+ L ++ + + +L++ G TV+ I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 598 HRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNS 632
H L I+ ++ I L G+IV G+ + K S
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923
|
Length = 935 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 27/241 (11%)
Query: 394 HSLKGEI-DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
H + I + N+ P ++D+S ++ G + V G G+G++ L L Y
Sbjct: 251 HEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310
Query: 453 DPQ-NGKILIDGVDIKELDPM-YLRSQIGSVSQE-------PTLFSGTIYENILYGVNDS 503
+ G + I+G + +P +R+ I V ++ P L G +NI V S
Sbjct: 311 PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKS 367
Query: 504 SSVTKSDIIHAAKEANAYGFVID-----FKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558
I AA E G I + F I LSGG +Q+ +A+ L+
Sbjct: 368 --FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLT 420
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
++L+LDE T +D +Y + I +L EG ++ ++ L+ + S+++ V+ +GK
Sbjct: 421 NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
Query: 617 I 617
+
Sbjct: 481 L 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-06
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +Y + +L D+SL I G ++G +G+GKSTL L+ +P G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 50/195 (25%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L +L + I + V G SGSGKST L+ LI + P + R++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKST---LVNEGLYASGKARLISFL------PKFSRNK 61
Query: 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGE 537
+ + Q F+ID G+ T+ G+
Sbjct: 62 LIFIDQ-------------------------------------LQFLIDVGLGYLTL-GQ 83
Query: 538 RGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL 594
+ LSGG+ QR+ +A L + + +LDE ++ L ++ + I+ LI G TV+
Sbjct: 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143
Query: 595 TIAHRLSTIRKSNQI 609
I H L + ++ I
Sbjct: 144 LIEHNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL 600
LSGG+ QR+AIA AL + + DE +S LD + I +L E VL + H L
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199
Query: 601 STIRK-SNQICVL 612
+ + S+ I L
Sbjct: 200 AVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-----GVDIKELDP 471
++ +S+ + G + ++G SGSGKS +A + + N ++ D +D+ L P
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG-----FVID 526
R +G ++ I++ ++ S V + +I G F
Sbjct: 81 RERRKLVG---HNVSM----IFQEPQSCLDPSERVGRQ-LIQNIPAWTYKGRWWQRFGWR 132
Query: 527 FKNGFDTI--VG---ERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ + + VG + IM L+ G+ Q++ IA AL + ++L+ DE T++++
Sbjct: 133 KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEP- 191
Query: 576 NEYLVQSAIEKLI------EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
Q+ I +L+ T+L I+H L I + +++I VL G+ VE L+
Sbjct: 192 ---TTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
Query: 629 NP 630
P
Sbjct: 249 MP 250
|
Length = 330 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL 600
LSGG+ QR+AIA AL++ + + DE +S LD I +L E GK V+ + H L
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273
Query: 601 STIRK-SNQICVL 612
+ + S+ + +L
Sbjct: 274 AVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 39/219 (17%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++SL++++G + + G G+G++ LA L L + G+I+++G +I L R G
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLARG 339
Query: 480 SV-----SQEPTLF-SGTIYENILYGVNDSSSVTKSDI---IHAAKEA---NAYGFVIDF 527
V Q L+ + N+ ++T + I A+E Y ++
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNV-------CALTHNRRGFWIKPARENAVLERYRRALNI 392
Query: 528 K-NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD--AENEYLVQSAI 584
K N + LSGG +Q++ IA+ L ++L++DE T +D A N+ I
Sbjct: 393 KFNHAEQAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND------I 442
Query: 585 EKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
+LI VL I+ L I + ++++ V+ +G+I
Sbjct: 443 YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDPM 472
+L ++SL + +G + G SGSGKSTL L Y P G+IL+ + VD+ +P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 473 YL----RSQIGSVSQ 483
+ R+ IG VSQ
Sbjct: 86 EVLEVRRTTIGYVSQ 100
|
Length = 235 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRS 476
+ND+S ++ G + V G G+G++ L +L +G + +DG ++ P L +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 477 QIGSVSQEPT---LFSG-TIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
I +S++ L G ++ EN+ L + S + A E A V DF F
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSR--AGGSLKHADEQQA---VSDFIRLF 382
Query: 532 -------DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ +G +LSGG +Q++AIAR L+ + K+L+LDE T +D
Sbjct: 383 NIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
+L +++ + G +T+++G SG+GK+TL +L + G I I G K+ +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFA 952
Query: 475 RSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAKEANAYG---FV----- 524
R I ++ + S T+ E+++Y S + KE + FV
Sbjct: 953 R--ISGYCEQNDIHSPQVTVRESLIY----------SAFLRLPKEVSKEEKMMFVDEVME 1000
Query: 525 -IDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
++ N D IVG G+ LS Q++R+ IA L+ I+ +DE TS LDA +V
Sbjct: 1001 LVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1060
Query: 583 AIEKLIE-GKTVLTIAHRLS 601
+ ++ G+TV+ H+ S
Sbjct: 1061 TVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT------VLTI 596
SGG +QR+ IAR L+ +++ +DE T LD VQ+ + L+ G V+ +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIV 208
Query: 597 AHRLSTIRK-SNQICVLDKGKIVEIG 621
H L+ R ++++ V+ +G++VE G
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIA 597
LSGG+ QRI +A+ L K+S + +LDE T+ L ++ + +++L++ G TV+ I
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 598 HRLSTIRKSNQICVLDKG 615
H L I+ ++ ++D G
Sbjct: 890 HNLDVIKTAD--YIIDLG 905
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QRI +A+ L K+S + +LDE T+ L + ++KL+E G
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD-------VKKLLEVLQRLVDKG 222
Query: 591 KTVLTIAHRLSTIRKSNQI 609
TV+ I H L I+ ++ I
Sbjct: 223 NTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 39/199 (19%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDGVDI-----K 467
D +IL+ + L + GS ++G +G+GKSTL LL P +G+I L G+ +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH 383
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+L+ +LR+ S Q + E L D + +GF D
Sbjct: 384 QLE--FLRAD-ESPLQHLARLAPQELEQKL-----------RDYL------GGFGFQGD- 422
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
V E SGG+K R+ +A + ++ +LLLDE T+ LD + + Q+ E L
Sbjct: 423 ------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD---MRQALTEAL 473
Query: 588 I--EGKTVLTIAHRLSTIR 604
I EG V+ ++H +R
Sbjct: 474 IDFEGALVV-VSHDRHLLR 491
|
Length = 638 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLT 595
L+ G+ Q++ IA AL + ++L+ DE T+A+ E Q+ I +L+ T+L
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAM----EPTTQAQIFRLLTRLNQNNNTTILL 214
Query: 596 IAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
I+H L + + +++I VL G+ VE L+ P
Sbjct: 215 ISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP 250
|
Length = 330 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 36/218 (16%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
S +++G + + G G+G+S L LL G++ +DG P+ +RS ++
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK------PIDIRSPRDAI 326
Query: 482 SQEPTL------FSG-----TIYENILYGVNDSS---SVTKSDIIHAAKEA-NAYGFVID 526
L G ++ +NI N S+ + +I+ EA NA F+
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNI----NISARRHHLRAGCLINNRWEAENADRFIRS 382
Query: 527 FKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALD--AENE-YLVQS 582
T E+ IM LSGG +Q+ + R L + K++LLDE T +D A++E Y V
Sbjct: 383 LN--IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV-- 438
Query: 583 AIEKLIE-GKTVLTIAHRL-STIRKSNQICVLDKGKIV 618
I +L G VL ++ L + +++I V+ +G+I
Sbjct: 439 -IYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG--VDI 466
P P ++D+S ++ G + + G G+G++ L L Y + G+I IDG V I
Sbjct: 270 PVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKI 329
Query: 467 KE-LDPMYLRSQIGSVSQE-------PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ + I V ++ P + G +NI D T I A E
Sbjct: 330 RNPQQAI--AQGIAMVPEDRKRDGIVPVMGVG---KNITLAALDR--FTGGSRIDDAAEL 382
Query: 519 NAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
I + T E I LSGG +Q+ +A+ L+ KIL+LDE T +D +
Sbjct: 383 KTILESIQ-RLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAK 441
Query: 578 YLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
Y I KLI +G ++ I+ L + S+++ V+ +GK+
Sbjct: 442 Y----EIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 4e-04
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QR+ +A+ L K+S K L +LDE T+ L E+ I KL+E G
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED-------IRKLLEVLHRLVDKG 883
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TV+ I H L I+ ++ I L D G+IV G+ + K S
Sbjct: 884 NTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931
|
Length = 943 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS 601
SGG K++++ A ALI ++LLDE T+ +D + ++ + I +I EG+ V+ +H +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131
Query: 602 TIRK-SNQICVLDKGKIVEIGSYAHL 626
++ ++ KG +G+ HL
Sbjct: 2132 ECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
LN++S ++ G + +IG +GSGKSTL+ L+ + P G + I G +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS----------AAL 89
Query: 478 IGSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I S +G ENI L G+ +TK I E +I+F + +
Sbjct: 90 IAISSGLNGQLTGI--ENIELKGL--MMGLTKEKIKEIIPE------IIEFAD-IGKFIY 138
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE----GKT 592
+ S G K R+ A ++ IL++DEA S D + + ++K+ E GKT
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKT 195
Query: 593 VLTIAHRLSTIR 604
+ I+H LS ++
Sbjct: 196 IFFISHSLSQVK 207
|
Length = 549 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRS 476
+ D+S + G + + G G+ ++ + L + + G I + G I + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 477 QIGSVSQEPTLFSGTIYENILYGVND-----SSSVTKSDIIHAAKEANAYGFVIDFKN-- 529
V++E S IY + G N + K ++ ++ + +VID
Sbjct: 324 GFALVTEERR--STGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK 381
Query: 530 --GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
G T +G LSGG +Q++ I R L+ + +IL+LDE T +D ++ + I +L
Sbjct: 382 TPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL 437
Query: 588 I-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
+ K ++ I+ + + +++I V+ G + I
Sbjct: 438 AKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598
SGG + RIA+ARAL + +LLLDE T+ LD +++ + K KT + ++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM---- 541
T G++ I+ G N S KS I+ +A + G +
Sbjct: 17 TFGEGSL--TIITGPNGSG---KSTIL----DAIGLALGGAQSATRRRSGVKAGCIVAAV 67
Query: 542 ----------LSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEY-LVQSAIEK 586
LSGG+K+ A+A L +K + +LDE LD + L ++ +E
Sbjct: 68 SAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127
Query: 587 LIEGKTVLTIAHRLSTIRKSNQI 609
L++G V+ I H ++++
Sbjct: 128 LVKGAQVIVITHLPELAELADKL 150
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 47/242 (19%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477
D+S + G + G GSG++ L L + G+I ++G DI P+ ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 478 IGSVSQ---EPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ +++ + F +I +N+ ++++S + A G + + T
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNM--------AISRS--LKDGGYKGAMG-LFHEVDEQRT 388
Query: 534 IVGERGIM-------------LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+R ++ LSGG +Q++ I++ L ++++ DE T +D + +
Sbjct: 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
Query: 581 QSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF-NKLM 638
+ +L +GK +L ++ L I I V D+ + G ++ N + M ++M
Sbjct: 449 YKVMRQLADDGKVILMVSSELPEI-----ITVCDRIAVFCEGRLTQILTNRDDMSEEEIM 503
Query: 639 KY 640
+
Sbjct: 504 AW 505
|
Length = 510 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 15/205 (7%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
SL + +G + +G++GSGKS LA L L+ G E + S
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL------AGELPLLSG----ERQSQFSHITRLSF 72
Query: 482 SQEPTLFSGTIYEN---ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
Q L S N +L D + T ++II + A + + G ++ R
Sbjct: 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR 132
Query: 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA 597
LS G+ ++ + +AL+ + +L+LDE LD + + + L G T++ +
Sbjct: 133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192
Query: 598 HRLSTIRK-SNQICVLDKGKIVEIG 621
+R I VL + E G
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETG 217
|
Length = 490 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 542 LSGGQKQRIAIARALIKKSK----ILLLDEATSALDAENEYLVQSAIEKLIE-------- 589
LSGG+ QRI +A + S + +LDE + L Q E+LIE
Sbjct: 482 LSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLH-------QRDNERLIETLKRLRDL 532
Query: 590 GKTVLTIAHRLSTIRKSNQICVLD--------KGKIVEIGSYAHLIKNPNS 632
G TV+ + H TIR ++ I +D G+IV G+ L+ NP S
Sbjct: 533 GNTVIVVEHDEDTIRAADHI--IDIGPGAGEHGGEIVAEGTPEELLANPES 581
|
Length = 935 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 61/193 (31%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
V+L++ + I G ++G +G GKSTL LL G G
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-----------N 63
Query: 476 SQIGSVSQEPTLFSGTIYENILYG----------------VNDSSSVT----KSDIIHA- 514
Q+ V+QE E ++ G ND ++ K D I A
Sbjct: 64 WQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW 123
Query: 515 ------AKEANAYGF--------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
A + GF V DF SGG + R+ +A+ALI +S
Sbjct: 124 TIRSRAASLLHGLGFSNEQLERPVSDF---------------SGGWRMRLNLAQALICRS 168
Query: 561 KILLLDEATSALD 573
+LLLDE T+ LD
Sbjct: 169 DLLLLDEPTNHLD 181
|
Length = 638 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| KOG0058|consensus | 716 | 100.0 | ||
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| KOG0060|consensus | 659 | 100.0 | ||
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0064|consensus | 728 | 100.0 | ||
| KOG0061|consensus | 613 | 100.0 | ||
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.96 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| KOG0059|consensus | 885 | 99.95 | ||
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| KOG0927|consensus | 614 | 99.94 | ||
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.93 | |
| KOG0065|consensus | 1391 | 99.93 | ||
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.91 | |
| KOG0062|consensus | 582 | 99.91 | ||
| KOG0927|consensus | 614 | 99.9 | ||
| KOG0066|consensus | 807 | 99.9 | ||
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.89 | |
| KOG0062|consensus | 582 | 99.88 | ||
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.87 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.85 | |
| KOG2355|consensus | 291 | 99.84 | ||
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.84 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.84 | |
| KOG0065|consensus | 1391 | 99.83 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.82 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.82 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.79 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.78 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.77 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.74 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.73 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.72 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.7 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.69 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.69 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.69 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.68 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.6 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.59 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.57 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.56 | |
| KOG0066|consensus | 807 | 99.55 | ||
| KOG0063|consensus | 592 | 99.54 | ||
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.54 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.45 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.4 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.38 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.37 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.36 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.36 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.35 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.35 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.34 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.3 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.29 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.29 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 99.28 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.25 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.23 | |
| PRK12369 | 326 | putative transporter; Reviewed | 99.22 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.22 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.19 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 99.17 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.15 | |
| KOG0063|consensus | 592 | 99.15 | ||
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.14 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.1 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.09 | |
| PF13748 | 237 | ABC_membrane_3: ABC transporter transmembrane regi | 99.08 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.08 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.08 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 99.05 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.04 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.04 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.01 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.99 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.98 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.97 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.97 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.96 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.85 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.83 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.82 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.8 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.78 | |
| PF05992 | 315 | SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009 | 98.75 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.7 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.69 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.66 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.65 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.61 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.6 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.59 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.59 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.47 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.46 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.46 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.43 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.43 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.42 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.42 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.41 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.37 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.37 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.36 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.33 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 98.32 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.3 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.29 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.28 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.27 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.27 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.26 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 98.26 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.24 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.19 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.18 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.18 | |
| COG3044 | 554 | Predicted ATPase of the ABC class [General functio | 98.18 |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-125 Score=1020.35 Aligned_cols=574 Identities=49% Similarity=0.820 Sum_probs=548.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++.+.+++|+++..++++.+++++..+..|.+++.++|.+....+ . ...+......+.++++.+++++.+|.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-~-~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-S-ADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999887211 1 344555666777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
++..++.++..++|.++|.++++++.+|||++.+||++||+++|++.+.+.++.++...+.++++.++.+++|+++||.+
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
+++.++.+|+++++..+++++.++.+++.+++.++.++...|.+++|+|||+|+.|+.+.++|.+..++.++...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
...+.+..++..++..+.++++|++++..|+||.|.+++|+.|..++..++..++.++.+++++..|.+|++|+++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.++...|. ...|.|+|+||+|+||.+++.+||+|+||+|+|||+||+||||||||||+++||++||+|++|+|.+||
T Consensus 451 i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 451 IPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 7666433333 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+||+++++.+||++||+|.|||.||++||+|||.||.++ +++|||++|++.|+.||||.++|+||||.|||+|.+||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 999999999999999999999999999999999999885 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||||||||+|||.||||||||||||+++|..|+++|.+.++++|||+|||||+|+++||+|+|+++|+|+|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhcC
Q psy5743 624 AHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~~ 643 (644)
+||+++++|.|++|+++|..
T Consensus 687 ~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHhhCcccHHHHHHHHhcc
Confidence 99999877999999999975
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-116 Score=988.30 Aligned_cols=607 Identities=33% Similarity=0.511 Sum_probs=568.1
Q ss_pred cccccccccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 25 KIISHKPFSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPF 99 (644)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~ 99 (644)
+.++.||+.|.+..+. .+....+++ .|.......+.++..+.+++..+.++|+.+...++.+++.++++++.|+
T Consensus 97 ~~~v~dp~~g~~~l~~-~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~ 175 (709)
T COG2274 97 KVVVLDPAKGIRRLSL-EEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPL 175 (709)
T ss_pred eEEEEeCCCCcEEcCH-HHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999888765555 666666664 3443311222344567889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhH
Q psy5743 100 ALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGE 179 (644)
Q Consensus 100 ~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~ 179 (644)
+++.++|.++...+ ...+.++++++++..++..++..+|.|+..+.+.++..++...+|+|++++|+.||+++++||
T Consensus 176 ~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge 252 (709)
T COG2274 176 FSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGE 252 (709)
T ss_pred HHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhh
Confidence 99999999987654 456788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 180 LINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANA 259 (644)
Q Consensus 180 i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (644)
+++|++ |.+.|+++++..+...+.+++++++.+++|++++|.+++++++.+|+++++..++.+.+++..++..+..++.
T Consensus 253 ~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~ 331 (709)
T COG2274 253 IISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQ 331 (709)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhH
Q psy5743 260 VQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGN 339 (644)
Q Consensus 260 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~ 339 (644)
++.+.|++.|+++||+.+.|.++..+|++...+..+...+..+.........+++..+..++++|+|+++|++|.+|+|.
T Consensus 332 ~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~ 411 (709)
T COG2274 332 QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQ 411 (709)
T ss_pred hhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCcccc
Q psy5743 340 LSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILN 419 (644)
Q Consensus 340 l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~ 419 (644)
++||.++.+.+..|+..+.+++.++++...+.+|+.++++.|+|.+.+......++..|+|+|+||+|+|+.+ ++++|+
T Consensus 412 LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~ 490 (709)
T COG2274 412 LVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLE 490 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-Ccchhh
Confidence 9999999999999999999999999999999999999999988754433223345567899999999999864 568999
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g 499 (644)
|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++||+|++++++.++|++||||+||++||+|||+|||+++
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~ 570 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG 570 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
+|+ +++|++++||+.+++||||++||+||||+|||+|.+|||||||||+|||||+++|+||||||||||||+++|+.
T Consensus 571 ~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 571 NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 997 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
|.++|.+..+++|+|+||||++++++||+|+|||+|+|+|+|+|+||++. +|.|+++++.|
T Consensus 648 I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 648 ILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998 89999999987
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-111 Score=953.48 Aligned_cols=577 Identities=36% Similarity=0.596 Sum_probs=541.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142 (644)
Q Consensus 63 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (644)
+..+.+++++.+|+|+.++++.+.+++..+..++..+++++++..+..............|+++++++.+...+..+++.
T Consensus 649 ~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 649 KVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred cccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999887554333444334478888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDK-HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 143 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
|++...|.++..++|..+|+++++++.+|||. +++|.+.+|+.+|+..++..+...+..++.++..+++.+++.|+++|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 34499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
.++++++++.|++++..+...+.+.....+..+..++..+...|+++|||||++|+.|+++.+.|.+..++..+...+..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
.+.++..++.+.+..+..++.+|+|++++.+|.+++..++-.+.....-...+.+...+.+++.++..|..+++++++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999888888888888999999999999999999999999998
Q ss_pred CCccCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 382 PLISTSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 382 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
|..+... .....++..|+|+++||+|+||.+++.+||+|+||+|++||++|+||||||||||++.||.|+|+|++|.|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 8544322 222234567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 461 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
|||+|+++++++++|+++|.|+|+|.||++||||||+||.++ ++++||.+||+.|++|+||.+||+||||.|||+|.
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~---vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE---VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC---CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 999999999999999999999999999999999999999543 89999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
+||||||||||||||++|||+||||||||||||+++|+.|+++|++...+||+|+|||||+|+++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHhhcC
Q psy5743 621 GSYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|||+||+++ +|.|++|++.|..
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhccC
Confidence 999999995 8999999999863
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-104 Score=901.00 Aligned_cols=570 Identities=23% Similarity=0.332 Sum_probs=504.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.++.+++++++..++.++.|+++++++|.+...+.. ...+..+..+++++.++..++.+++.+.
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999987532111 1223333444555666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|..+|+|++++|+++|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL---------SSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l---------~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~ 375 (644)
.....+..++..+..+++++++++.+ .|.+|+|.+ ++++.+...+..|+..++..+..++++.++.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555545555555544 377787754 33346667888999999999999999999999999
Q ss_pred HHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++++.+++...........+..++|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+| |+
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 326 TFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999876542221111111112346999999998864 367999999999999999999999999999999999999 99
Q ss_pred CcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 456 ~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
+|+|++||+|+++++++++|++|+||||||+||+|||||||++|+|+ +++||+++|++.+++++||++||+||||.|
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD---ASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC---CCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999876 899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
||+|.+|||||||||+||||+++||+||||||||||||+++|+.|+++|++..+++|+|+||||++++++||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHHHHhhcCC
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l~~~q~~~ 644 (644)
+|+|+|+|+||+++ +|.|+++++.|.++
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~~~ 587 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQEE 587 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhhcC
Confidence 99999999999987 79999999999764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-104 Score=915.82 Aligned_cols=605 Identities=27% Similarity=0.415 Sum_probs=541.1
Q ss_pred cccccccc--ccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5743 24 FKIISHKP--FSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMA 96 (644)
Q Consensus 24 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 96 (644)
.+++++|| +.|.+..+. +++...+++ .|+..+.+.+.+...+++++.+++++++.+...++++++..++.++
T Consensus 96 ~~~~i~dP~~~~g~~~~~~-~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (708)
T TIGR01193 96 NHLIIADPDPTVGITKISK-EDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIA 174 (708)
T ss_pred CEEEEEcCCcccCCEEecH-HHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999 777654454 666666666 4544444332223557788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccC
Q psy5743 97 VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176 (644)
Q Consensus 97 ~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~ 176 (644)
.|++++.++|.+..... ...+..+.++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+|++++
T Consensus 175 ~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~ 251 (708)
T TIGR01193 175 GSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRR 251 (708)
T ss_pred HHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCc
Confidence 99999999999876432 223444455555666777889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256 (644)
Q Consensus 177 ~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (644)
+|++++|++ |++.++++++..+...+.+++++++.++++++++|++++++++++|+++++..++.++.++..++..+..
T Consensus 252 ~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
T TIGR01193 252 TGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQAN 330 (708)
T ss_pred hhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8999999999999998999888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Q psy5743 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336 (644)
Q Consensus 257 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t 336 (644)
++.++.+.|.++|+++||++|.|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++.+|.+|
T Consensus 331 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls 410 (708)
T TIGR01193 331 AVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLT 410 (708)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999998888888877777777777777777888899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCc
Q psy5743 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416 (644)
Q Consensus 337 ~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~ 416 (644)
+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++.+......+.++..++|+++||+|+|++ +++
T Consensus 411 ~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~ 488 (708)
T TIGR01193 411 LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSN 488 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCc
Confidence 999999999999999999999999999999999999999999876653322111112234467999999999973 467
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
+|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||+||+|||||||
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 568 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL 568 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 497 LYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 497 ~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
++| +|+ +++++++++++.++++++|++||+||||+|||+|.+|||||||||+||||++++|+|||||||||+||++
T Consensus 569 ~l~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 569 LLGAKEN---VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred hccCCCC---CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 999 454 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
+|+.+.+.|.+. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++ +|.|++++++
T Consensus 646 te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~ 708 (708)
T TIGR01193 646 TEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIHN 708 (708)
T ss_pred HHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhhC
Confidence 999999999885 78999999999999999999999999999999999999987 7999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-104 Score=917.14 Aligned_cols=603 Identities=24% Similarity=0.349 Sum_probs=542.6
Q ss_pred ccccccccccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5743 24 FKIISHKPFSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVP 98 (644)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p 98 (644)
.+++++||+.|.+..+. +++...+++ .|+..+.+.+.+...+++++..++++++.+...++++++..++.++.|
T Consensus 96 ~~~~i~dP~~g~~~~~~-~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p 174 (710)
T TIGR03796 96 GRVYLNDPALGPRTVSL-EEFDESFTGVVLTFEPGPEFQKGGRKPSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIP 174 (710)
T ss_pred CEEEEECCCCCCEEccH-HHHHhhCCCeEEEEEECccccccCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999765454 666666665 454444333223356778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChh
Q psy5743 99 FALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTG 178 (644)
Q Consensus 99 ~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G 178 (644)
++++.++|.+...... ..+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+++|+++++|
T Consensus 175 ~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g 251 (710)
T TIGR03796 175 AFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAG 251 (710)
T ss_pred HHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCccc
Confidence 9999999988754432 2344455555666677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 179 ELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLAN 258 (644)
Q Consensus 179 ~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (644)
++++|+++| +.++++++..+..++.+++.+++.++++++++|++++++++++++++++..++.++.++..++..+..++
T Consensus 252 ~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (710)
T TIGR03796 252 DIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGK 330 (710)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHh
Q psy5743 259 AVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG 338 (644)
Q Consensus 259 ~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g 338 (644)
.++.+.|.++|+++||++|+|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++.+|.+|+|
T Consensus 331 ~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G 410 (710)
T TIGR03796 331 LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIG 410 (710)
T ss_pred HHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999988888888888877777778788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------CCccCCCCCccEEEEEEEEEcCCC
Q psy5743 339 NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSG------GKFFSHSLKGEIDFNNIRFSYPSR 412 (644)
Q Consensus 339 ~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf~Y~~~ 412 (644)
.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... ...+.+...+.|+++||+|+|++.
T Consensus 411 ~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~ 490 (710)
T TIGR03796 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL 490 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999998766532221 011102234679999999999853
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+|||
T Consensus 491 -~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 491 -EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred -CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
||||++++|+ ++++++++|++.++++++|.++|+||||+|||+|.+|||||||||+||||++++|+|||||||||||
T Consensus 570 ~eNi~l~~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L 646 (710)
T TIGR03796 570 RDNLTLWDPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646 (710)
T ss_pred HHHhhCCCCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence 9999999876 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 573 DAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
|+++|+.|.+.|.+ .++|+|+||||+++++.||+|++|++|+|+|.|+|+||+++ +|.|++++
T Consensus 647 D~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 647 DPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999999987 48999999999999999999999999999999999999987 79999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-103 Score=904.61 Aligned_cols=599 Identities=25% Similarity=0.377 Sum_probs=535.4
Q ss_pred cccccccccccchh-ccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHH
Q psy5743 23 AFKIISHKPFSKWK-LQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTL-AKSEKRKLTGAVCLLLVSSSITM 95 (644)
Q Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~ 95 (644)
-.+++++||+.|.+ ..+. ++...+ ++ .|.. ..+ ...+++++.. ++++|+.+...++++++.+++.+
T Consensus 81 ~~~~~i~dP~~g~~~~~~~-~e~~~~-~g~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (686)
T TIGR03797 81 RGGYEIFDPATGTRRRVDA-AMAATL-APEAYMFYRPL--PDK---ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGM 153 (686)
T ss_pred CCEEEEECCCCCCCcccCH-HHHHhc-CCEEEEEecCC--ccc---cccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999864 3333 444443 33 3442 111 1234555555 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcc
Q psy5743 96 AVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKH 175 (644)
Q Consensus 96 ~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~ 175 (644)
+.|++++.++|.++.... ...+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+|+++
T Consensus 154 ~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 230 (686)
T TIGR03797 154 LVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY 230 (686)
T ss_pred HHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC
Confidence 999999999999875433 23445555666667777888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 176 KTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255 (644)
Q Consensus 176 ~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (644)
++|++++|++ |++.++++++..+...+.+.+.+++.++++++++|++++++++++++++++..++.++.++..++..+.
T Consensus 231 ~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (686)
T TIGR03797 231 STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLEL 309 (686)
T ss_pred ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 789999999998889888988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy5743 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETI 335 (644)
Q Consensus 256 ~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~ 335 (644)
.++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+
T Consensus 310 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~l 389 (686)
T TIGR03797 310 SGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGL 389 (686)
T ss_pred HHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998888888877777777778888899999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCC
Q psy5743 336 TVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA 415 (644)
Q Consensus 336 t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~ 415 (644)
|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... . ...+..+.|+++||+|+|+++ ++
T Consensus 390 tiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-~~~~~~~~I~~~nvsf~Y~~~-~~ 466 (686)
T TIGR03797 390 SLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T-DPGKLSGAIEVDRVTFRYRPD-GP 466 (686)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C-CCCCCCceEEEEEEEEEcCCC-Cc
Confidence 99999999999999999999999999999999999999999998765532211 1 111234579999999999753 57
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+||||||
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
|++|+| ++++++++|++.++++++|+++|+||||+|||+|.+|||||||||+||||++++|+|||||||||+||++
T Consensus 547 i~~~~~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 547 IAGGAP----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HhcCCC----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 999965 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+.|.+.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|.|+++++.|+
T Consensus 623 te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q~ 686 (686)
T TIGR03797 623 TQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQL 686 (686)
T ss_pred HHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhcC
Confidence 999999999887 6899999999999999999999999999999999999987 799999999774
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-102 Score=899.69 Aligned_cols=594 Identities=25% Similarity=0.385 Sum_probs=531.9
Q ss_pred ccccccccc--hhccchhhhhhhcccC-----CCCCccccccc---chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy5743 26 IISHKPFSK--WKLQNNEKIISRYYTS-----TPNNQKVGTKI---KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITM 95 (644)
Q Consensus 26 ~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 95 (644)
++++||+.| .+..+. ++...++++ .|...+...+. +...+++++.+++++|+.+...++++++.+++.+
T Consensus 86 ~~i~DP~~g~~~~~~~~-~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (694)
T TIGR03375 86 ARVLLPETGDGEQELSL-DALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWPLYRDVLIASLLINLLAL 164 (694)
T ss_pred EEEEccCCCCCceEecH-HHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998 554444 566666555 34333322111 2345678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcc
Q psy5743 96 AVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKH 175 (644)
Q Consensus 96 ~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~ 175 (644)
+.|++++.++|.+...... ..+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+ +++
T Consensus 165 ~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~ 240 (694)
T TIGR03375 165 ASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA 240 (694)
T ss_pred HHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC
Confidence 9999999999988754331 233344445555566778889999999999999999999999999999999998 789
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 176 KTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255 (644)
Q Consensus 176 ~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (644)
++|++++|+ +|++.++++++..+...+.+++++++.++++++++|++++++++++|+++++..++.++.++..++..+.
T Consensus 241 ~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (694)
T TIGR03375 241 SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRE 319 (694)
T ss_pred ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 6999999999998889999998888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy5743 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETI 335 (644)
Q Consensus 256 ~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~ 335 (644)
.++..+.+.|.++|+++||.+++|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+
T Consensus 320 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~l 399 (694)
T TIGR03375 320 SAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL 399 (694)
T ss_pred HHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999888888888887777777777888889999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCC
Q psy5743 336 TVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA 415 (644)
Q Consensus 336 t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~ 415 (644)
|+|.++++..+...+..|+..+...+.+++.+..+.+|+.++++.+++.+.........+..+.|+++||+|+|++ .++
T Consensus 400 s~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~ 478 (694)
T TIGR03375 400 TMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QET 478 (694)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC-CCc
Confidence 9999999999999999999999999999999999999999999877653322111111223467999999999985 356
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+|||+||
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
|++++|+ +++++++++++.++++++|++||+||||.|||+|.+|||||||||+||||++++|+|+|||||||+||++
T Consensus 559 i~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 559 IALGAPY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred HhCCCCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 9999886 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+.|+++|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 636 te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999899999999999999999999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-101 Score=887.82 Aligned_cols=567 Identities=40% Similarity=0.633 Sum_probs=513.4
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGR 141 (644)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (644)
....+++++++++++|+.+..++++.++.+++.++.|++++.++|.+....+. ..+....++++++.++..++.+++
T Consensus 145 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999988744321 122223334444556667788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
.+.....+.++..++|..+|++++++|+++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||.|++|+.+.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+..........++..+..++++++|++++.+|.+|+|.++++..|...+..|+..+++.+.+++++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76666666666666677778889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+ .+..+.|+++||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 462 ~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 462 PNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 65332221111 22346799999999998654578999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++.+++|++|+||||||++|+|||||||++|.|+ .+||+++++++.++++++++++|+||||.+||+|.+
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||+||||++++|+||||||||||||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999999 3 345789999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHH
Q psy5743 622 SYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~ 638 (644)
+|+||+++ +|.|++|+
T Consensus 696 t~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 696 THKQLMED-QGCYKHLV 711 (711)
T ss_pred CHHHHHhC-CCchHhcC
Confidence 99999987 68998874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-101 Score=868.08 Aligned_cols=563 Identities=39% Similarity=0.610 Sum_probs=511.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLM 145 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (644)
+++++.+.+ ++ .+..++++.++..++....|++++.++|.+... ......+..+++++.++..+..+...+..
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 77 888889999999999999999999999988711 12233333444455556677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 146 NVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL 225 (644)
Q Consensus 146 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 225 (644)
...+.++..++|..+|++++++|+++|++.++|++++|+++|++.++.++......+..+++.+++.+++++..+|.+++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 156 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLAL 156 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88889999999999999999999999999999999999999999999998887555555678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 226 ISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 226 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
++++..|++.+...++.++.++..++.++..++.++.+.|.++|++++|+|+.++...+++.+..++..+...+......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (567)
T COG1132 157 ILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEA 236 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888999999999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIS 385 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~ 385 (644)
.......++..+....++++|++.+..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|+.++++.+++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 316 (567)
T COG1132 237 LLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE 316 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 77777788888888999999999999999999999999999999999999999999999999999999999999876533
Q ss_pred CCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 386 TSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 386 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
+.... .....++|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 317 ~~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 317 DPPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CCCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 32221 1234467999999999984 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 466 IKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 466 i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+++++.++||++|++|||||+||+|||+|||++|+|+ +++||+++||+.++++|||+++|+||||+|||+|.+||||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 9999999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||||+||||++|||||||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+|||+|+|+|.|+|+|
T Consensus 470 QrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHhhcC
Q psy5743 626 LIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 626 Ll~~~~~~y~~l~~~q~~ 643 (644)
|+++ +|.|++||+.|..
T Consensus 550 Ll~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 550 LLAK-GGLYARLYQAQGG 566 (567)
T ss_pred HHHc-CCHHHHHHHHhhc
Confidence 9997 8999999998864
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-100 Score=879.78 Aligned_cols=607 Identities=28% Similarity=0.434 Sum_probs=544.4
Q ss_pred cccccccccccc-hhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5743 23 AFKIISHKPFSK-WKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMA 96 (644)
Q Consensus 23 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 96 (644)
-.+++++||+.| .+..+. ++...++++ .|.. +.+ +.+...+++++.+++++++.+...++++++.+++.++
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~-~e~~~~~~g~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~ 157 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSR-EVLEALWSGTVILLATRS-VAG-KALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALV 157 (694)
T ss_pred CCEEEEEcCCCCCceeeCH-HHHHhhCCCeEEEEecCc-ccc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999988 543344 566655555 3443 222 2223457788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccC
Q psy5743 97 VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176 (644)
Q Consensus 97 ~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~ 176 (644)
.|++++.++|.++...+ ...+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+++|++++
T Consensus 158 ~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~ 234 (694)
T TIGR01846 158 TPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRR 234 (694)
T ss_pred HHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCC
Confidence 99999999999875433 233444555566666778889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256 (644)
Q Consensus 177 ~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (644)
+|++++|+ +|++.++++++..+...+.+++++++.++++++++|++++++++++++++++..++.++.++..++..+..
T Consensus 235 ~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 313 (694)
T TIGR01846 235 VGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERS 313 (694)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 59999999999999998888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Q psy5743 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336 (644)
Q Consensus 257 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t 336 (644)
++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+|
T Consensus 314 ~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it 393 (694)
T TIGR01846 314 AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALS 393 (694)
T ss_pred HHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998888888888777777777788888999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCc
Q psy5743 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416 (644)
Q Consensus 337 ~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~ 416 (644)
+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... ....+...+.|+++||+|+|+++ +++
T Consensus 394 ~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~ 471 (694)
T TIGR01846 394 PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG-LAALPELRGAITFENIRFRYAPD-SPE 471 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC-CCCCCCCCCeEEEEEEEEEcCCC-Ccc
Confidence 9999999999999999999999999999999999999999998766532211 11112234679999999999753 467
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
+|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi 551 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~ 576 (644)
++++|+ +++++++++++.++++++++++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++
T Consensus 552 ~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 552 ALCNPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred hcCCCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 999876 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 577 e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||+++ +|.|+++++.|.
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhhc
Confidence 99999999998889999999999999999999999999999999999999987 699999999774
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-101 Score=875.40 Aligned_cols=573 Identities=38% Similarity=0.584 Sum_probs=519.3
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKS-EKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~-~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+..++.+... .+..+..+.+.+++..+...++.++.+.++|.+.............-+.+.++.+.+...+..+++...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c 94 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSC 94 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554433 344455666777777777777888889999988654421212234445555666666667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
....+.+...++|+.+++.+++++..|||.+.+|++.+|+++|++.+++.+..-+..++..+.+++..+++.|++.|+++
T Consensus 95 ~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Lt 174 (1228)
T KOG0055|consen 95 WMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLT 174 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++.+.|++++....+.+.+.+..++.+++.++..+.+.|++.++||+.+|+-|+.+.++|.+..+...+...+...+.
T Consensus 175 lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~ 254 (1228)
T KOG0055|consen 175 LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFK 254 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
++..+...++........+|+|+.++.++..+.|.++..+..+..-...+.+....+..+..+.++..+|++.++..|..
T Consensus 255 G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i 334 (1228)
T KOG0055|consen 255 GLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSI 334 (1228)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCC
Confidence 99999888888888899999999999999999999888777777677778888888899999999999999999987765
Q ss_pred cCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 385 STSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 385 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.... +........+.|+|+||+|+||.+++.++|+|+||+||+||+|||||||||||||+++||.|+|+|++|+|+|||
T Consensus 335 ~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG 414 (1228)
T KOG0055|consen 335 DPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDG 414 (1228)
T ss_pred CcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcC
Confidence 4322 122233466889999999999999888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.|+++++.+++|++||.|.|+|.||++||+|||+||+|| ++++++.+||+.++.++||.+||+||||.+||+|.+||
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d---at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD---ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc---ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||||||||+|||+||||||||||||+++|+.|+++|++..++||+|+|||||||+++||+|+||++|+|+|.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhc
Q psy5743 624 AHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~ 642 (644)
+||++. +|.|++|++.|.
T Consensus 572 ~ELi~~-~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 572 DELIAL-GGIYSSLVRLQE 589 (1228)
T ss_pred HHHHhc-cchHHHHHHHHh
Confidence 999998 499999999884
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-98 Score=852.95 Aligned_cols=570 Identities=31% Similarity=0.498 Sum_probs=516.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.++..+++.++..++..+.|++++.++|.+...... ..+..+.++++++.++..++.+++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999988888888888888888999999999987753321 122233333444566677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|..+|++++++|+++|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|+++
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889888888899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.....+..++..+..++++++|++.+.+|.+|+|+++++..+...+..|+..+.+.+..++.+..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 87777777777777888889999999999999999999999999999999999999999999999999999999866542
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+..... .++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 329 ~~~~~~--~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 329 DEGKRV--IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCCCcC--CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 221111 12233579999999999853 468999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++|+||||||++|+|||||||++|+|+ .++|++++++++.++++++++++|+||||.+||+|.+|||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999764 3799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+||||++++|+||||||||||||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhcC
Q psy5743 625 HLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q~~ 643 (644)
+|+++ ++.|+++++.|..
T Consensus 564 ~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 564 ELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHHhC-CChHHHHHHHHhc
Confidence 99987 6899999998753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-98 Score=797.77 Aligned_cols=552 Identities=28% Similarity=0.401 Sum_probs=510.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 81 TGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERL 160 (644)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 160 (644)
....++.+++.+..+.+.+++...++.++.... ...+..+++.++++++++.++.+.+..+..+.+.++...+|..+
T Consensus 3 ~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~ 79 (559)
T COG4988 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV 79 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888889999999988876542 23455566777888899999999999999999999999999999
Q ss_pred HHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 161 FGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240 (644)
Q Consensus 161 ~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 240 (644)
++|+.++++.+-.+.++|++.+.+...++.++.++..++++...+.+..++.++.+++++|..++|.++++|++.+++.+
T Consensus 80 l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 80 LDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIIL 320 (644)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (644)
++++.++..+++.....++++++.|.++|+.|+|.||..+...++..+..++.++..++..+...+...+..++..+.++
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888887788888888888887
Q ss_pred HHHHHHHHHHHc-CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC-ccCCCCCc
Q psy5743 321 SVLYYGGVMVSY-ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK-FFSHSLKG 398 (644)
Q Consensus 321 ~vl~~g~~~v~~-g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~-~~~~~~~~ 398 (644)
++..+.+..... |.+++...+.++.+...++.|++.++..++.-+.+..+.+.+..+++.|++.++...+ ...+..+-
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 777777777777 8999999999999999999999999999999999999999999999987764443322 11222233
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|.||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 45666999999863 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|+||+|||||||++++|+ .+||+++++++.+++.||+.. |+|+||+|||+|.+|||||+||++|||||++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~---~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPD---ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCc---CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999987 899999999999999999999 9999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
++++++||||||+||.|||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+|+|+||.++ +|.|++|+
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~ 552 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLL 552 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 79999999
Q ss_pred Hhhc
Q psy5743 639 KYQT 642 (644)
Q Consensus 639 ~~q~ 642 (644)
+.|.
T Consensus 553 ~~q~ 556 (559)
T COG4988 553 KQQE 556 (559)
T ss_pred HHHh
Confidence 9875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-99 Score=913.65 Aligned_cols=569 Identities=29% Similarity=0.451 Sum_probs=494.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.++++++.++++++.++++++++++..++.++.|++++.++|.++... ........++++++++.++..++.+++.|+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~ 889 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYY 889 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889888999999999999999999999999999776421 111223334555666667777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDK--HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..++++++..++|..+|++++++|+.||++ +++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 890 ~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~ 969 (1466)
T PTZ00265 890 NNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPI 969 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 889999999999999999999988888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHcCchHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKIT-RN-----------------VQDKLANAVQVAEERISNIRTVKSFSQEKLEMS 284 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~ 284 (644)
++++++++ ++++...+.++.+... ++ ..+..++....+.|.++|+++||+|+.|+++.+
T Consensus 970 l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 970 VAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 88776533 3333444444333211 11 123355678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 285 HFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364 (644)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~ 364 (644)
+|.+..++..+...+.....+...++..++..+..++++|+|++++..|.+|+|.+++++.++.....++..+...+.++
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888777888899999999999999999999998877766667888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCC-CCCcc---CCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCc
Q psy5743 365 NKGLGACHRLWEIMEREPLISTS-GGKFF---SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440 (644)
Q Consensus 365 ~~~~~s~~Rl~~~l~~~~~~~~~-~~~~~---~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsG 440 (644)
+++..+.+|+.++++.+++.+.. ..... .....+.|+|+||+|+||++++.+||+|+||+|+||++||||||||||
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsG 1206 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSG 1206 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCC
Confidence 99999999999999876543211 11111 112346799999999998655568999999999999999999999999
Q ss_pred HHHHHHHHhccCCC------------------------------------------------------CCcEEEECCccC
Q psy5743 441 KSTLAMLLLRLYDP------------------------------------------------------QNGKILIDGVDI 466 (644)
Q Consensus 441 KSTLl~lL~g~~~p------------------------------------------------------~~G~I~idg~~i 466 (644)
||||++||+|+|+| ++|+|++||+|+
T Consensus 1207 KSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di 1286 (1466)
T PTZ00265 1207 KSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDI 1286 (1466)
T ss_pred HHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEH
Confidence 99999999999999 699999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.++||++||||||+|+||+|||||||+||+|+ ++++++++||+.|+++|||++||+||||.|||+|.+|||||
T Consensus 1287 ~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred HhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 999999999999999999999999999999999886 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeC----CeEE-E
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDK----GKIV-E 619 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~----G~iv-e 619 (644)
||||||||||+|+|+||||||||||||+++|+.|+++|.+.. +++|+|+||||++++++||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999984 68999999999999999999999999 9955 8
Q ss_pred ecChhHHhcCCCcHHHHHHHhh
Q psy5743 620 IGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+|||+||+++++|.|++|++.|
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974379999999987
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-98 Score=845.07 Aligned_cols=567 Identities=23% Similarity=0.336 Sum_probs=503.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKK-EMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+++++++++++++.+.++++++++..++.++.|+++++++|........ ..........+.++++.++..+..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999976422210 000011111223444556778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
.++.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+.+++.+++++++.++++++++|.++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAG-LAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 225 li~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
+++++++|++++ ++.++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877776654 4577788888889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAY-IGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~-~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
......+..++..+..++++++|+++ ..|.+++|.++++..+... ...|+..+...+..++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88777777777777778888999988 4899999999998887654 456889999999999999999999999998766
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
+.+......+ .+..+.|+++||+|+|+++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 5322211111 1234579999999999853 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++.+++|++|+||||||++|+|||+|||++++|+ +++++++++++.+++++|+++ |+||||+|||+|.+|
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~---~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN---ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc---cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999876 899999999999999999999 999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+||||++++|+|||||||||+||+++|+.|.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHh
Q psy5743 623 YAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~ 640 (644)
|+||+++ +|.|+++|+.
T Consensus 557 ~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc-CcHHHHHHhh
Confidence 9999987 7999999874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=838.55 Aligned_cols=567 Identities=26% Similarity=0.424 Sum_probs=496.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
+.+++++.+.+++++.+...++++++.+++.++.|+++++++|.+....+... .....+++++++..++..++.+++.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 9 PTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888999888999999999999999999999998765332111 11222233344455567778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
.....+.++..++|..+|+++++.|+++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++||.|+.|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888889999999999999999999999999999999999888877776665555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 304 KGVF-FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 304 ~~~~-~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.... ..+..++..+..+++++++++ +..|.+++|.++++..+...+..|+..++..+..++++..+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 233333333333333334444 67999999999999999999999999999999999999999999999998654
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
++.... . .+...++|+++||+|+|++ ++++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 327 ~~~~~~-~--~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 327 QQYGND-D--RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred ccCCCC-c--cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 422111 1 1123457999999999984 3579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++++++|++|+||||||++|+|||||||++|+ + ++|++++++++.++++++|+++|+||||.+||+|.+|
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~---~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D---ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999996 3 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+|||||+++|+|+|||||||+||+++|+.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhc
Q psy5743 623 YAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+||+++ ++.|+++++.|.
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 699999998774
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-96 Score=831.54 Aligned_cols=567 Identities=32% Similarity=0.526 Sum_probs=520.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++.+.+++++.++.+++++++.+++.+..|++++.++|....... ...+..+.++++++.++..++.+++.++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999998765432 123333444556667777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|..+++++++.|.+++++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
++++.++++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+.++|.+..++..+...+..+....
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIST 386 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~ 386 (644)
...+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+.+.+..+++++++.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88887787778888899999999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 387 SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 387 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
... +..+..++|+++||+|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 320 ~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 320 GTR--AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred CCC--CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 211 111234579999999999863 46899999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.+++|++++||||+|++|+|||||||++++++ +.++++++++++.+++++++.++|+|+||+|||+|.+|||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 999999999999999999999999999999999762 289999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||||+||||++++|+|++||||||+||+++|+.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|+|+
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhhc
Q psy5743 627 IKNPNSMFNKLMKYQT 642 (644)
Q Consensus 627 l~~~~~~y~~l~~~q~ 642 (644)
+++ ++.|++++..|.
T Consensus 555 ~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 555 LAR-NGLYAQLHNMQF 569 (571)
T ss_pred HHc-CCHHHHHHHHhh
Confidence 987 689999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-100 Score=777.61 Aligned_cols=551 Identities=27% Similarity=0.431 Sum_probs=470.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy5743 80 LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVV------GACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 80 l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 153 (644)
.+...++..+.-++....|.+..+++|.+.... .....+. ...+++.++ +++++.+|.++...+.+-..
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~--~~~~~~~---~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQytt 291 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPD--TFQYSLV---FLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTT 291 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcc--hhhHHHH---HHHHHHHHHhcCCccccchhhhheeEEEEhhHhHH
Confidence 334444455556677789999999999886321 2222222 222223332 25678888888888889999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVS--QCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~--~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 231 (644)
+++-..+|.|+.++++.|+-.+.+|+++.-+....+.+. +.+...+.+.+.++...++++ .+.++||.++++++++
T Consensus 292 R~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 292 REIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHH
Confidence 999999999999999999999999999988876655443 333333344444444333333 3356999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFT 311 (644)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (644)
.+++.+.........+.++++..+-.+....-.|++-|.+++|.||+|+++.++|.+...++.+...+....-.+.....
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998888777777777888877777777788899999999999999999999999999888777666544333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc
Q psy5743 312 GLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKF 391 (644)
Q Consensus 312 ~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~ 391 (644)
+.+..+..++...+.+|.|..+.+|+|+.+.|.+|..++..|+..++..+..+|++.+.+++++|+++++++..+.++..
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 44444444444456678888999999999999999999999999999999999999999999999999988877666665
Q ss_pred cCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 392 FSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 392 ~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
|.....|.|+|+||+|.|+ +++|+|+||||+++||+++|+|||||+||||++++|.|+|+.++|.|.|||+||++...
T Consensus 530 pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 6666778999999999997 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++|++||+||||..|||+||..||.|++|+ +++||+++|+++|++||-|..+|+||+|.|||+|-.||||||||+|
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVA 684 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVA 684 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHH
Confidence 9999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+++|+|.|++|||||||||..||+.|+.++.++.++||.|+|||||||+-+||.|+|+++|+|+|.|+|+||+++++
T Consensus 685 iARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 685 IARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cHHHHHHHhhc
Q psy5743 632 SMFNKLMKYQT 642 (644)
Q Consensus 632 ~~y~~l~~~q~ 642 (644)
|.|++||+.|+
T Consensus 765 G~Ya~MWq~qq 775 (790)
T KOG0056|consen 765 GAYADMWQAQQ 775 (790)
T ss_pred CcHHHHHHHHH
Confidence 99999998764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-95 Score=822.46 Aligned_cols=566 Identities=26% Similarity=0.404 Sum_probs=502.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.+...++++++..++.++.|++++.++|.+..... ...+.++++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD------IFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999999999999999999999998765321 1111222222333444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+...+..++..++.++++++++|+++
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888999999999999999999999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++++++++...+.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+..+..
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865442
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+.........+..+.|+++||+|+|++ ++++|+|+||+++|||++||||+||||||||+|+|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 221111111123356999999999974 356999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++|+||||+|++|+|||||||++++|+ ++|++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999876 889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+||||++++|+|+|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhc
Q psy5743 625 HLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q~ 642 (644)
||+++ ++.|++++..|.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHC-CChHHHHHHHhh
Confidence 99987 799999998663
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-94 Score=819.78 Aligned_cols=571 Identities=38% Similarity=0.658 Sum_probs=512.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
..+.++++++++++.+...+++.++.+++.++.|++++.++|.++..... ..+..++.+++++.++..+..+.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS---GLLNRYFAFLLVVALVLALGTAARFYL 81 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999986643321 223333334444555666778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++...+|..++++++++|.++|++.+.|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 82 VTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+..+..
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888889999999999999999999999999999999999999999999999999998888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........++..+..++++++|++.+..|.+|+|+++++..+...+..|+..++..+..++.+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 66666666666666777888999999999999999999999999999999999999999999999999999999865542
Q ss_pred cCCCCC-ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 385 STSGGK-FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 385 ~~~~~~-~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+..... ....+..+.|+++||+|+||++.++++|+|+||+++|||++||+|+||||||||+|+|+|+|+|++|+|++||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 211111 1111223569999999999864346899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|+++++++++|++++||||||++|+|||||||++++|+ .++++++++++.+++++++.++|+|+||++||+|.+||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 999999999999999999999999999999999999876 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||+||||++++|+|+|||||||+||.++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhc
Q psy5743 624 AHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~ 642 (644)
++++++ ++.|+++++.|.
T Consensus 559 ~~l~~~-~~~~~~l~~~~~ 576 (576)
T TIGR02204 559 AELIAK-GGLYARLARLQF 576 (576)
T ss_pred HHHHHc-CChHHHHHhhcC
Confidence 999986 799999998773
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-94 Score=812.76 Aligned_cols=565 Identities=27% Similarity=0.406 Sum_probs=504.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++|+.++..++++++.+++.++.|+++++++|.+..... .... .+++++..++..+..++..++
T Consensus 6 ~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (585)
T TIGR01192 6 VYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPT-LALWAGFGVFNTIAYVLVARE 79 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999999999999998764321 1111 112222344455566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+...+..++++++++++++.++|.++
T Consensus 80 ~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 80 ADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888999999999999999999999999999999999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66666666666777788889999999999999999999999999999999999999999999999999999999865543
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
.+...........+.|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 320 EEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred cCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 221111111122356999999999974 246899999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++++++|++++||||+|++|++||+|||+++.|+ +++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999876 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+|||||+++|+++|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhh
Q psy5743 625 HLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q 641 (644)
|++++ +|.|+++++.|
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 79999999876
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-95 Score=814.59 Aligned_cols=525 Identities=24% Similarity=0.307 Sum_probs=465.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++++.+++++.++..++++++.+++.++.|+++++++|.+..... . ..+..+.+.++++.++..+..+++.+...
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-V--LYLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899989899999999999999999999999998764321 1 11111222233345566778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|.++|+|++++|.++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.++++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999998999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLA-IVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 227 ~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
+++.+|++.++. .+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+...
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766555 4444555667778888889999999999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIS 385 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~ 385 (644)
.......++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCC--ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 386 TSGGK--FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 386 ~~~~~--~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
..... ....+..++|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 21111 011123357999999999975 34699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|++++ .+++|++|+||||||+||+|||||||++|+|+ +++|++++|++.++++|||.+||+||||+|||+|.+||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999 99999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl 600 (644)
|||||||+||||++++|+||||||||||||+++|+.|++.+.+..+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-95 Score=759.30 Aligned_cols=554 Identities=29% Similarity=0.444 Sum_probs=487.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 80 LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSD-KKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRE 158 (644)
Q Consensus 80 l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 158 (644)
++.++++.+.+-.+....|+++...+|.+.... .+.........+..+.++-+...+++.++..++.++.+++.+..-.
T Consensus 32 v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~ 111 (591)
T KOG0057|consen 32 VFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSS 111 (591)
T ss_pred HHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556788889999999999874211 1111223344555666677788889999999999999999999999
Q ss_pred HHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy5743 159 RLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIISSKLALISLIIVPPVAGL 237 (644)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~l~~~~ 237 (644)
++|.++++++.++|.++.+|++.+.+.+....+..++...+..++..++-+..+...+ +-..+..+++.++....|...
T Consensus 112 ~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~ 191 (591)
T KOG0057|consen 112 DVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF 191 (591)
T ss_pred HHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee
Confidence 9999999999999999999999999999999999999888888877776655555444 346778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNA 317 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (644)
......+..+.++++..+.+...+.+.|++.|.++||.||.|+++.++|.....++.+...+.....++.......++..
T Consensus 192 Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 192 TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV 271 (591)
T ss_pred EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999988888777777777777777767
Q ss_pred HHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCC
Q psy5743 318 IILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLK 397 (644)
Q Consensus 318 ~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~ 397 (644)
....+++.|..-+.+|.+|+|+++....+..++..|+..++..+..+.++..-++-++...+......+. ..+....+
T Consensus 272 ~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~ 349 (591)
T KOG0057|consen 272 ALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFG 349 (591)
T ss_pred HHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCC
Confidence 7777778888888999999999999999999999999999999999999888777666554433222211 12223445
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+|+||+|+|++ ++++|+++||+||+||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+.
T Consensus 350 ~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 67999999999974 5679999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|||||||..||++||.+||.||+|. +++||+.++|+.+++||-|.++|+||+|.|||+|..||||||||++||||++
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~s---as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNPS---ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCCC---cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 9999999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|||||++||||||+||.+||+.+.+.|.+...+||+|+|+||++++++||+|+++++|++.|.|||+||++ +.+.|+++
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 48999999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
|..|-
T Consensus 583 w~~~~ 587 (591)
T KOG0057|consen 583 WTTQT 587 (591)
T ss_pred hcccc
Confidence 98764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-93 Score=748.20 Aligned_cols=559 Identities=24% Similarity=0.345 Sum_probs=490.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 74 KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (644)
+.+|+.++++++++++..+.....-.+.+|+|..-...+.... -.....+..+=+..+...+.+|+.++..+....++.
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~-f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYI-FNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3377788899999999888888899999999985433322111 111112222333566778899999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV-P 232 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~-~ 232 (644)
..+|..+|+++...++.-..+.++||+++|+..|++.+++.+...+.+.+.+++...+..+.+-+++|++++...+++ .
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877777777788998887765444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 233 PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTG 312 (644)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (644)
+.++++..+.+.-++..++..+.++.+.+++.|.+.|..+.+.||.++.+...+.+....+.+...+.++...+......
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc
Q psy5743 313 LSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLS-NFYSELNKGLGACHRLWEIMEREPLISTSGGKF 391 (644)
Q Consensus 313 ~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~-~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~ 391 (644)
++..+..+..+.+.+..+..|..+...+.+++........++..+. ..+..+.+...|..|+.++.+.+++...+..+.
T Consensus 251 l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~ 330 (573)
T COG4987 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT 330 (573)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc
Confidence 8777766655566666777888886555555555555666666666 777889999999999999999887754442211
Q ss_pred cCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 392 FSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 392 ~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
+ .....++++||||+||+ .++++|+|+||++++||+|||+|+||||||||+++|.|.|+|++|+|.++|.|++.++.
T Consensus 331 ~--~~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 331 A--TTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred C--CccceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh
Confidence 1 12227999999999997 46789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+.+|+.+++++|+++||+||+|||+.+++|+ ++||+++++++.+|+++++++.|+||+|++||+|.+||||||||++
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~---AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPD---ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+|++|+|++||||||.+||++||+.+++.|.+..++||+|+||||+..++.||+|+||++|+++|+|+|+||+++ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred cHHHHHHHh
Q psy5743 632 SMFNKLMKY 640 (644)
Q Consensus 632 ~~y~~l~~~ 640 (644)
|.|+++++.
T Consensus 564 g~~~~l~q~ 572 (573)
T COG4987 564 GRYKRLYQL 572 (573)
T ss_pred cHHHHHhcc
Confidence 999999874
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-93 Score=803.78 Aligned_cols=548 Identities=28% Similarity=0.436 Sum_probs=487.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 165 (644)
+.++.+++.++.|++++.++|.+...... . ..+..++++++++.++..++.+++.++....+.++..++|.++|++++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 80 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMT-T-GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLS 80 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788999999999987543211 1 122333444555556677788888999999999999999999999999
Q ss_pred cCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 166 SQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIISSKLALISLIIVPPVAGLAIVYGKF 244 (644)
Q Consensus 166 ~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~l~~~~~~~~~~~ 244 (644)
++|+++|+++++|++++|+++|++.++..+...+..++..++..++.++++ ++++|.+++++++++|+++++...+.++
T Consensus 81 ~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~ 160 (569)
T PRK10789 81 RQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQ 160 (569)
T ss_pred cCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877777777777666666555555 5789999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLY 324 (644)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 324 (644)
.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+...........+..+..+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (569)
T PRK10789 161 LHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIG 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887777777666666666667777889
Q ss_pred HHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEE
Q psy5743 325 YGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNN 404 (644)
Q Consensus 325 ~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~ 404 (644)
+|++++.+|.+|+|.++++..+...+..|+..++..+..++.+.++.+|+.++++.+++.+..... .++..+.|+++|
T Consensus 241 ~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~--~~~~~~~I~~~~ 318 (569)
T PRK10789 241 GGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP--VPEGRGELDVNI 318 (569)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCC--CCCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999876543222111 112345799999
Q ss_pred EEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecC
Q psy5743 405 IRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484 (644)
Q Consensus 405 vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~ 484 (644)
|+|+|++. ++++|+|+||+++||+++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+|+
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999853 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy5743 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564 (644)
Q Consensus 485 ~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Ili 564 (644)
|++|+|||+|||++++|+ +++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|+|
T Consensus 398 ~~lf~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 398 PFLFSDTVANNIALGRPD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred CeeccccHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999876 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|+||+++ +|.|+++++.|.
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 99999999999999999999998889999999999999999999999999999999999999987 699999998764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-92 Score=788.30 Aligned_cols=528 Identities=26% Similarity=0.364 Sum_probs=473.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 76 EKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIY-TSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITK 154 (644)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (644)
+|+.+..+++++++.+++.++.|+++++++|.+. .... ...+..+.++++++.++..++.+++.+...+.+.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKS 77 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999999999999875 3221 12334444555566677788899999999999999999
Q ss_pred HHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPV 234 (644)
Q Consensus 155 ~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~ 234 (644)
++|..+|++++++|..+|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.++++++++.|++
T Consensus 78 ~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 78 QLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889888888888888899999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLS 314 (644)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (644)
.++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..........++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899888999999999999999999999999999999999999999999988888777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCC
Q psy5743 315 GNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSH 394 (644)
Q Consensus 315 ~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~ 394 (644)
..+..+++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..+.. ..+ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~ 315 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-A 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-C
Confidence 66666666667778888999999999999999999999999999999999999999999999998543321111 111 1
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+..+.|+++||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123479999999999863 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++++||+|+|++|+|||||||+++.|+ +++++++++++.++++++++++|+||||++||+|.+|||||||||+|||
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
|++++|+|+|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-91 Score=860.29 Aligned_cols=563 Identities=23% Similarity=0.316 Sum_probs=469.8
Q ss_pred HHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRK-LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~-l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
++..+.|++...+. .+..+++.++..++....|+.+++..|......... . ...+..+++++.++..++.+++.++
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~-~~~~~~iy~~l~i~~~~~~~~~~~~ 1028 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN--N-TSLRLSVYGALGILQGFAVFGYSMA 1028 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--C-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443222 223333344455666777877777776432111100 0 1112224444555666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
....+.+...++|..+++++++.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++++.+|+++
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999988888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++.++++++++..++.+..++..+...+..+...+++.|+++|+++||+||+|+++.+++.+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666677777777778888888888889999999999999999999999999988888888777666655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVS-YETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
.+......+++. +++++++++.+. .|.+++|.+.+++.|...+..|+..+...+.+++.+++|.+|+.++++.+++
T Consensus 1189 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444443333332 233444555554 5889999999999999999999999999999999999999999999987665
Q ss_pred ccC--CC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 384 IST--SG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 384 ~~~--~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
.+. .. ..++.++..+.|+|+||+|+|+++ .+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 1266 ~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1266 APWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred ccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 331 11 111223566789999999999853 35799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 461 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
|||+|+++++++++|++|++|||||+||+|||||||..+. +++|+|+++|++.++++++|.++|+||||+|||+|.
T Consensus 1345 IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1345 IDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred ECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 9999999999999999999999999999999999998442 289999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
+|||||||||+|||||+|+|+|||||||||+||.+||+.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHh
Q psy5743 621 GSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+|+||+++ +|.|++|++.
T Consensus 1501 G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHhC-CCHHHHHHHH
Confidence 999999987 6999999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-90 Score=778.56 Aligned_cols=540 Identities=23% Similarity=0.320 Sum_probs=476.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 74 KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (644)
+++|+.++..++++++.+++.++.|+++++++|.+...... ..+..+.++++++.++..++.+++.+...+.+.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV---PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999987643321 223334445555666778889999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPP 233 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 233 (644)
.++|.++|+|++++|+. ..++..+++.+|++.+++++.......+.+.+..++.++++++++|++++++++.+|+
T Consensus 79 ~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 79 GALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999984 3356788899999999998876444444444444445567889999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 234 VAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
++++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..+....+..+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999999888888877777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccC
Q psy5743 314 SGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFS 393 (644)
Q Consensus 314 ~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~ 393 (644)
+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..+. .. .
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~--~ 310 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MP--L 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CC--C
Confidence 66677778889999999999999999999999999999999999999999999999999999999876543221 11 1
Q ss_pred CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 394 ~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++..+.|+++||+|+|++. ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1233579999999999753 467999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+|++++||||+|++|++||+|||++++++ +++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGEN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 99999999999999999999999988765 899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||++++|++||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.|+|+|+++
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999999875 6899999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-90 Score=849.75 Aligned_cols=562 Identities=23% Similarity=0.290 Sum_probs=441.9
Q ss_pred HHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKR--KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 66 ~~~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
++.+..|++...+ .+...+++.++..++....++.++...|........ ...+.++++++.++..++.+++.+
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-----~~~~~~i~~~l~~~~~i~~~~~~~ 975 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-----PLFYNLIYALLSFGQVLVTLLNSY 975 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554322 223333444555666677777777777643321111 112233455566667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
+....+.++..++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++++++++|+.
T Consensus 976 ~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~ 1055 (1622)
T PLN03130 976 WLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS 1055 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888888777754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
.++++.+.++++.+..++.+..++..+......+...+++.|+++|+++||+|++++++.+.+.+..+.. .+....
T Consensus 1056 ~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~ 1131 (1622)
T PLN03130 1056 LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4433333333333344455566666666777788899999999999999999999986666555544443 332222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 304 KGVFFGFTGL-SGNAIILSVLYYGGVMVSYET-IT-----VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376 (644)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~vl~~g~~~v~~g~-~t-----~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~ 376 (644)
.........+ +..+..+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..++.+..+.+|+.+
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111111 111222223333334444332 11 2334444455666777778888888889999999999999
Q ss_pred HHhcCCCccCC---CCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 377 IMEREPLISTS---GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 377 ~l~~~~~~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++.++|.+.. ....+.++..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+
T Consensus 1212 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1212 YIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99876654321 1112223556789999999999753 4679999999999999999999999999999999999999
Q ss_pred CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc
Q psy5743 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533 (644)
Q Consensus 454 p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T 533 (644)
|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.++++ ++|+++++|++.++++++|.++|+||||
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~----~tdeei~~Al~~a~l~~~I~~lp~GLdt 1366 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDA 1366 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC----CCHHHHHHHHHHcCcHHHHHhCccccCc
Confidence 999999999999999999999999999999999999999999998853 7999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 534 ~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
+|||+|.+|||||||||+|||||+|+|+|||||||||+||.+||+.|+++|++..+++|+|+||||++|+++||+|+||+
T Consensus 1367 ~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd 1446 (1622)
T PLN03130 1367 EVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLD 1446 (1622)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1447 ~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1447 AGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999999999987569999999764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-89 Score=832.18 Aligned_cols=571 Identities=28% Similarity=0.402 Sum_probs=505.1
Q ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLA-KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 65 ~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.+..++++. +.+++.++++++++++..++.+++|++++.++|.+.... ....++++++++.++..++.+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~ 119 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE------NVNDIIFSLVLIGIFQFILSFISSF 119 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566665 467778888999999999999999999999999764321 1223344555566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
+....+.++..++|.++|++++++|.+||++.++|++.+|+++|++.+++.+...+..++..++++++.++++++++|.+
T Consensus 120 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~L 199 (1466)
T PTZ00265 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARL 199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++++...++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+......+...+....
T Consensus 200 alv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~ 279 (1466)
T PTZ00265 200 TLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFM 279 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889889988899999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYE--------TITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g--------~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~ 375 (644)
.++..++..++..+..++++|+|++++..| .+++|.+++++.+......++..+...+..++.+..+.+|+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~ 359 (1466)
T PTZ00265 280 ESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLY 359 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777778888999999999986 588999988877766656666677778889999999999999
Q ss_pred HHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++++.+++.+........ +..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 360 ~ii~~~~~~~~~~~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 360 EIINRKPLVENNDDGKKL-KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred HHHcCCCCCCCCCCCccC-CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 999877654321111111 1224799999999998644457999999999999999999999999999999999999999
Q ss_pred CcEEEE-CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC--------------------------------
Q psy5743 456 NGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND-------------------------------- 502 (644)
Q Consensus 456 ~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~-------------------------------- 502 (644)
+|+|++ ||+|+++++..+||++||||+|+|.||++||+|||.+|.+.
T Consensus 439 ~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1466)
T PTZ00265 439 EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKC 518 (1466)
T ss_pred CCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccc
Confidence 999999 57999999999999999999999999999999999997421
Q ss_pred ----------------------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 503 ----------------------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 503 ----------------------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
..++++++++++++.+++++||.+||+||||.+|++|.+|||||||||+||||++++|
T Consensus 519 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P 598 (1466)
T PTZ00265 519 AGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP 598 (1466)
T ss_pred cchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 0136789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCC-----------------------
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKG----------------------- 615 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G----------------------- 615 (644)
+|||||||||+||+++|+.|++.|.++. +++|+|+||||+++++.||+|++|++|
T Consensus 599 ~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~ 678 (1466)
T PTZ00265 599 KILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENN 678 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccc
Confidence 9999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------eEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 616 ------------------------KIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 616 ------------------------~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+|+|||+||++..+|.|+.|++.|.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 679 NKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999844799999998874
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-92 Score=715.82 Aligned_cols=493 Identities=30% Similarity=0.410 Sum_probs=450.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIIS 220 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~ 220 (644)
..+....++.....+--..|.|+.++++.|+.++.+|.+..-+......++..+...+..++..++-+....+++ ..++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 445667788888899999999999999999999999999888877777777777777777666666554444444 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q psy5743 221 SKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300 (644)
Q Consensus 221 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 300 (644)
|+.++++++++.+|+++............++..++.+..++...|++-|.+++|.||.|+.+..+|.+..+.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999999999988888888888889999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5743 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER 380 (644)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~ 380 (644)
.....+.......+.......+.+.++..+..|.+|+|+++....+..++..|+..++..+.++.+++...++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 77666666666677777777888889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccCCCCCccCC-CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 381 EPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 381 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
+.+..+.+..++.+ -..+.|.|+||+|.|.+ .+++|+++||++++|+++|||||||+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 77765554444444 34567999999999974 5799999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 460 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
.+||+|+++...+++|+.||.||||..|||+||..||.+|+|+ ++++|++.|++.+++++||..+|+||+|.|||+|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 9999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
-.||||||||+||||+++|+|+||+|||||||||.+||+.|+.+|++..+++|.++|||||||+.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCcHHHHHHHh
Q psy5743 620 IGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
.|+|+||++. +|.|++||.+
T Consensus 478 rg~h~~ll~~-~g~ya~mw~~ 497 (497)
T COG5265 478 RGTHEELLAA-GGLYAEMWRR 497 (497)
T ss_pred cCcHHHHHHc-CChHHHHhcC
Confidence 9999999998 8999999963
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-89 Score=834.63 Aligned_cols=502 Identities=22% Similarity=0.299 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 135 ACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214 (644)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 214 (644)
.+..+++.+.....+.+....+|.++|+++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566667778999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHH
Q psy5743 215 MMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294 (644)
Q Consensus 215 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 294 (644)
++++.+|.+.++++.+..+++.+...+.+..++..+......+...+++.|+++|+++||+|++++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888886655544444445555666777778888888888999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMV--SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACH 372 (644)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v--~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ 372 (644)
+..........+......++..+..+++.+++.+.. ..+.+++|.+..++++...+..|+..+...+.+++.++.+.+
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555555555555555554444444444433 345689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCC--------------------------CCCc----cCCCCCccEEEEEEEEEcCCCCCCcccccee
Q psy5743 373 RLWEIMEREPLISTS--------------------------GGKF----FSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422 (644)
Q Consensus 373 Rl~~~l~~~~~~~~~--------------------------~~~~----~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~is 422 (644)
|+.++++..++++.. .... +.++..+.|+|+||+|+|+++ .+++|+|||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vs 1330 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVS 1330 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecce
Confidence 999999643321100 0000 111234679999999999753 467999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~ 502 (644)
|+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||..++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-- 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-- 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC-CCEEEeecccCCCCHHHHHHHH
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK-SKILLLDEATSALDAENEYLVQ 581 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~-p~IliLDEaTSaLD~~~e~~i~ 581 (644)
+++|+|+++|++.++++++|.++|+||||.|||+|.+|||||||||+|||||+++ |+|||||||||+||+++|+.|+
T Consensus 1409 --~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1409 --EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred --CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 582 ~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+.|++.++++|+|+||||++++++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986579999999765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-89 Score=837.92 Aligned_cols=510 Identities=21% Similarity=0.298 Sum_probs=418.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5743 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGL 203 (644)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~ 203 (644)
..+++++.++..++.+++.+.....+.++..++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++
T Consensus 953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~ 1032 (1495)
T PLN03232 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 34455566667778888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHH
Q psy5743 204 RSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEM 283 (644)
Q Consensus 204 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~ 283 (644)
..++.+++.+++++++++...++++.+.++++....++.+..++..+......+...+++.|+++|+++||+|++++++.
T Consensus 1033 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~ 1112 (1495)
T PLN03232 1033 NQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMA 1112 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHH
Confidence 88888777777777767544333332222222333344455566777778888899999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc----C-HhHHHHHHHHHHHHHHHHHHH
Q psy5743 284 SHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVS-YETI----T-VGNLSSFLLYAAYIGISIGGL 357 (644)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~----t-~g~l~a~~~~~~~~~~~l~~l 357 (644)
+++.+..+...+..........+...... .+..+++++.+.+.+. .|.+ . .+.+..++.+...+..|+..+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1113 KINGKSMDNNIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66655544433322221111111111111 1222222233334443 2332 1 233445677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccCC--CC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEE
Q psy5743 358 SNFYSELNKGLGACHRLWEIMEREPLISTS--GG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434 (644)
Q Consensus 358 ~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~--~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIv 434 (644)
...+.+++.+.++.+|+.++++.+++.+.. .. ..+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+||||
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEE
Confidence 999999999999999999999876654321 11 11223456789999999999642 468999999999999999999
Q ss_pred CCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHH
Q psy5743 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514 (644)
Q Consensus 435 G~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a 514 (644)
||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+|||||||.+++ + ++|+|+++|
T Consensus 1269 G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~---~sdeei~~a 1344 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-E---HNDADLWEA 1344 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-C---CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999885 2 899999999
Q ss_pred HHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEE
Q psy5743 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594 (644)
Q Consensus 515 ~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI 594 (644)
++.++++++|+++|+||||+|||+|.+|||||||||+|||||+|+|+|||||||||+||++||+.|++.|++..+++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 595 ~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+||||++++++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999987557999999865
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-88 Score=700.04 Aligned_cols=545 Identities=24% Similarity=0.343 Sum_probs=500.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 71 TLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQ 150 (644)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (644)
..+..+++.++...+++.+.+++.+..|+++-++.|.+..+.+ ..++..+.++.+.++++..++.++|..+..+++.
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~ 92 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGE 92 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888999999999999999999999999998764 3456777777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230 (644)
Q Consensus 151 ~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 230 (644)
++..++...+|...++.+.. .+..|+=.+-+. |.+++++|++..-...+.+.....+++.++|.++|+++++.++.
T Consensus 93 ~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~Lr-DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~g 168 (580)
T COG4618 93 RLDRQLNGPVFAASFSAPLL---RRGSGDGLQPLR-DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAG 168 (580)
T ss_pred HHHHHhccHHHHHHHhhHHh---hcCCCccccchh-hHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877655 344555555454 99999999999888889998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGF 310 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (644)
..+++.+.++-.+..++..++..+...+.++...-+.+|.++|++.|......++|.+....+.....+..-....+...
T Consensus 169 a~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~ 248 (580)
T COG4618 169 AIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGAL 248 (580)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999988888888899999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC
Q psy5743 311 TGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK 390 (644)
Q Consensus 311 ~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~ 390 (644)
+..+-++....++.+|+|++++|++|.|++++-..+......|+......|.++..+..|++|+.+++...|...+ .
T Consensus 249 Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~ 325 (580)
T COG4618 249 SRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---R 325 (580)
T ss_pred HHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---C
Confidence 8888899999999999999999999999999999999999999999999999999999999999999987665322 2
Q ss_pred ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 391 FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 391 ~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
.+.+.+++.+.++++++.-|+ .++|+++||||+++|||.+||+||||||||||.++|.|..+|.+|.|++||-|++++|
T Consensus 326 m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd 404 (580)
T COG4618 326 MPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404 (580)
T ss_pred CCCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC
Confidence 234456688999999998776 4689999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++.+-++|||.|||..||+|||+|||+-++++ +|+|+|.+|++.++.||.|.++|+||||.|||+|..|||||||||
T Consensus 405 ~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~---~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEE---ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred HHHhccccCcCcccceecCCcHHHHHHhcccc---CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 99999999999999999999999999988776 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+||||+|.||.+++||||.||||.+.|+.+.++|.+.. ++.|+|+||||++.+..+|+|++|++|++...|+-+|.+++
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999998864 58999999999999999999999999999999999998863
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-86 Score=811.38 Aligned_cols=547 Identities=20% Similarity=0.264 Sum_probs=450.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++.++++.++..++.++.|++++.++|.+..... .. ....+++++++..++..++.....+...+.+
T Consensus 293 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
T PLN03232 293 RALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AW--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVG 369 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888999999999999999999998754321 11 1112222333333333444333334447888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++.+++++ ..++.++..++.+++++++++..-.+.+++.++
T Consensus 370 ~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~ 448 (1495)
T PLN03232 370 FRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSL 448 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 577777777777666665554322222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.++.++..++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+..........
T Consensus 449 v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~ 528 (1495)
T PLN03232 449 ILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455677889999999999999999999999999999999999999999999999888877777666655544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGG 389 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~ 389 (644)
+.... ...+.++++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......
T Consensus 529 ~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~ 606 (1495)
T PLN03232 529 ILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP 606 (1495)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC
Confidence 22221 2234456889999999999999999999999999999999999999999999999999999986654221111
Q ss_pred CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 390 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
+..+..+.|+++|++|+|+++.++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 607 --~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 607 --PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred --CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 111223469999999999864456899999999999999999999999999999999999999998763
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
.+|++|+||+|+||||+|||||||+||+| .++++++++++.|+++++++.||+|++|+|||+|.+||||||||
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 748 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNATVRENILFGSD----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748 (1495)
T ss_pred ---EecCcEEEEcCccccccccHHHHhhcCCc----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHH
Confidence 35779999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHH-HHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQS-AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|+||||+|++|+||||||||||||+++|+.|.+ ++....+++|+|+||||+++++.||+|++|++|+|+|+|+|+||++
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999999998865 4666778999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHhh
Q psy5743 629 NPNSMFNKLMKYQ 641 (644)
Q Consensus 629 ~~~~~y~~l~~~q 641 (644)
+ ++.|+++++.+
T Consensus 829 ~-~~~~~~l~~~~ 840 (1495)
T PLN03232 829 S-GSLFKKLMENA 840 (1495)
T ss_pred c-chhHHHHHHhc
Confidence 6 68999998765
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-86 Score=808.94 Aligned_cols=546 Identities=20% Similarity=0.269 Sum_probs=453.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++.++++.++..++.++.|++++.++|.+..... .... ..+++++++..++..+......+...+.+
T Consensus 293 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (1622)
T PLN03130 293 RALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG--YIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888899999999999999999999998754321 1111 11122222222222222221222356888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++++++++ ..++.++..++.+++++++++..-++.++++++
T Consensus 370 ~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~ 448 (1622)
T PLN03130 370 FRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSL 448 (1622)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 567888888888777777666544444445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++.+++..++.++.++..++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+......+...
T Consensus 449 v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 528 (1622)
T PLN03130 449 MLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667778888999999999999999999999999999999999999999999998888777666555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGG 389 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~ 389 (644)
+.... ...+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++.......
T Consensus 529 ~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~ 606 (1622)
T PLN03130 529 ILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP 606 (1622)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC
Confidence 32222 2245566789999999999999999999999999999999999999999999999999999976543211111
Q ss_pred CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCC
Q psy5743 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKE 468 (644)
Q Consensus 390 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~ 468 (644)
+..+..+.|+++|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+++|++ |+|.+.|
T Consensus 607 --~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----- 679 (1622)
T PLN03130 607 --PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----- 679 (1622)
T ss_pred --cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-----
Confidence 11112346999999999985445689999999999999999999999999999999999999999 9998654
Q ss_pred CChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 469 LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+|+||+|+||||+|||||||+||+| .++++++++++.|+++++++.||+|++|.|||+|.+|||||||
T Consensus 680 --------~Iayv~Q~p~LfngTIreNI~fg~~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ 747 (1622)
T PLN03130 680 --------TVAYVPQVSWIFNATVRDNILFGSP----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ 747 (1622)
T ss_pred --------eEEEEcCccccCCCCHHHHHhCCCc----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH
Confidence 9999999999999999999999976 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHH-HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQ-SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~-~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
||+||||+|++|+||||||||||||+++++.|. +++....+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999998775 5677777899999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhh
Q psy5743 628 KNPNSMFNKLMKYQ 641 (644)
Q Consensus 628 ~~~~~~y~~l~~~q 641 (644)
++ ++.|+++++.+
T Consensus 828 ~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 828 NN-GPLFQKLMENA 840 (1622)
T ss_pred hc-chhHHHHHHhc
Confidence 86 68999998754
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-86 Score=768.63 Aligned_cols=549 Identities=23% Similarity=0.303 Sum_probs=485.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVS 148 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (644)
+....+.+++.++...++..+......+.|.++..+++.+..... .....+.+++++++..++..++.....+...+.
T Consensus 192 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~--~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~ 269 (1381)
T KOG0054|consen 192 LRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL--PLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRV 269 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc--ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 444556789999888888888888899999999999998865421 123344566666667777777777777888999
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISL 228 (644)
Q Consensus 149 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 228 (644)
|.++...+-..+|+|.++++...-..+++|+++|.++.|+++++++ ..+++.+|..++.+++++.+++..-.+.+++++
T Consensus 270 g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~-~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~ 348 (1381)
T KOG0054|consen 270 GMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDA-ACFLHLLWSAPLQIILALYLLYGLLGPSALAGV 348 (1381)
T ss_pred hhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999999999999999888999999999999999999996 568999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 229 IIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFF 308 (644)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (644)
+++++++++..++.++.++.+.+..+..+++.+.++|.++||++||+|+||+.+.++.++..++..+..++....++...
T Consensus 349 ~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~ 428 (1381)
T KOG0054|consen 349 AVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNS 428 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q psy5743 309 GFTGLSGNAIILSVLYYGGVM-VSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTS 387 (644)
Q Consensus 309 ~~~~~~~~~~~~~vl~~g~~~-v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~ 387 (644)
.....+. ..+.++.++++. ...+.++....++.+++++.+..|+..++..+..+.++.+|++|+.+++..++..+..
T Consensus 429 ~~~~~~p--~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 429 FLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred HHHHHHH--HHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 6655443 344445566665 5567889999999999999999999999999999999999999999999876654333
Q ss_pred CCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC
Q psy5743 388 GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467 (644)
Q Consensus 388 ~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 467 (644)
....+..+.+..|+++|.+|+|++.+.++.|+||||+|++|+.+||||++|||||||+..|+|++++.+|+|.++|
T Consensus 507 ~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---- 582 (1381)
T KOG0054|consen 507 VERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---- 582 (1381)
T ss_pred cccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC----
Confidence 2211222344579999999999875456699999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.++||||.||||||||||||.||.| .|+++..++++.|+|..+++.||.|+.|+|||+|.|||||||
T Consensus 583 ---------siaYv~Q~pWI~ngTvreNILFG~~----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 ---------SVAYVPQQPWIQNGTVRENILFGSP----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred ---------eEEEeccccHhhCCcHHHhhhcCcc----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 7999999999999999999999976 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHH-HHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e-~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|||+||||+|+|+||++||||.||||+++. +.+.++|+..+++||+|+|||+++.+++||+|++|++|+|+++|||+||
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 999999999999999999999999999955 4556778888999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHh
Q psy5743 627 IKNPNSMFNKLMKY 640 (644)
Q Consensus 627 l~~~~~~y~~l~~~ 640 (644)
++. ++.|.++..+
T Consensus 730 ~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 730 LKS-GGDFAELAHE 742 (1381)
T ss_pred Hhc-chhHHHHhhc
Confidence 986 6888887543
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-86 Score=767.04 Aligned_cols=512 Identities=28% Similarity=0.375 Sum_probs=455.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5743 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
+.+++.++.+...++..++.+.....+.+....++..+++++++.|+.||+..++|.|+||+++|++.+++.++..+..+
T Consensus 860 ~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~ 939 (1381)
T KOG0054|consen 860 YLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFF 939 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHH
Confidence 44455566666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLE 282 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 282 (644)
+...+.+++.++++.+..|+..++++.+.++++.+..++.+..|+..+-....++...+++.|++.|+.+||+|+.++++
T Consensus 940 ~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf 1019 (1381)
T KOG0054|consen 940 LQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERF 1019 (1381)
T ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHH
Confidence 99999999999999999999998888888888888899988889998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 283 MSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362 (644)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~ 362 (644)
.+++....+...+...-..-.+-++..-..+++++....+..+... ...+.++.|.+...++|...+...+..+.....
T Consensus 1020 ~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl-~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~ 1098 (1381)
T KOG0054|consen 1020 IQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL-LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSS 1098 (1381)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887766655444334444444445544444333333222 122227899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcc---CCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCC
Q psy5743 363 ELNKGLGACHRLWEIMEREPLIS---TSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439 (644)
Q Consensus 363 ~~~~~~~s~~Rl~~~l~~~~~~~---~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGs 439 (644)
++...++|.||+.|+.+.|+|.+ +...+++.||..|+|+|+|++.+|.++ -++||+||||+|+|||+|+|||++||
T Consensus 1099 elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGa 1177 (1381)
T KOG0054|consen 1099 ELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGA 1177 (1381)
T ss_pred HHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCC
Confidence 99999999999999999766511 111134568999999999999999864 58999999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHh
Q psy5743 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 440 GKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~ 519 (644)
|||||+++|.|+.+|.+|+|.|||+||++++..+||++++.+||||.||+||+|.||--. .+.+|+++|+|++.|+
T Consensus 1178 GKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf----~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1178 GKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF----DEYSDDEIWEALERCQ 1253 (1381)
T ss_pred CHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc----cccCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999544 4589999999999999
Q ss_pred hccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
+.++|.++|.|+|++|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|+..|++.|++.++++|||.||||
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR 1333 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 600 l~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
++|+.++|||+|||+|+|+|.|+|++|++++++.|++++..
T Consensus 1334 l~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1334 LNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred cchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999888999876653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-85 Score=796.75 Aligned_cols=500 Identities=19% Similarity=0.292 Sum_probs=427.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 132 VVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSA 211 (644)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 211 (644)
++..++.+++.++....+.+...++|.++++++++.|+.||++.++|+++||+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHH
Q psy5743 212 GVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291 (644)
Q Consensus 212 ~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 291 (644)
.++++++++|+++++++.++++++.+..++.+..++..+......+...+++.|+++|+.+||+||+++.+.++|.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998876655555555566667777777778888888899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 292 DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGAC 371 (644)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 371 (644)
...+..........+......++..+..+++.+ ..+....++.|.+..++++...+..++..+...+.++..++.+.
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~---l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTF---IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654443333332333332223322221111111 11222345666777777788888889999999999999999999
Q ss_pred HHHHHHHhcCCCccCCCC-----------------CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEE
Q psy5743 372 HRLWEIMEREPLISTSGG-----------------KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434 (644)
Q Consensus 372 ~Rl~~~l~~~~~~~~~~~-----------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIv 434 (644)
+|+.++++.+++...... .++.++..+.|+|+||+|+|++ ..+++|+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEEE
Confidence 999999977655321100 0112355678999999999985 3578999999999999999999
Q ss_pred CCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHH
Q psy5743 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514 (644)
Q Consensus 435 G~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a 514 (644)
|+||||||||+++|+|+++ ++|+|+|||+|+++++.+++|++++||||||+||+|||||||..+. +.+|+++++|
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~----~~tdeei~~a 1326 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE----QWSDEEIWKV 1326 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc----CCCHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999999999999999999997653 3799999999
Q ss_pred HHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEE
Q psy5743 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594 (644)
Q Consensus 515 ~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI 594 (644)
++.++++++|.++|+||||+|||+|.+|||||||||+|||||+++|+|||||||||+||.+||+.|++.|++..+++|+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI 1406 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 595 ~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+||||++++.+||+|+||++|+|+|.|+|++|+++ +|.|++|++.+
T Consensus 1407 ~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAA 1452 (1490)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHh
Confidence 99999999999999999999999999999999985 79999999865
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-84 Score=728.59 Aligned_cols=533 Identities=18% Similarity=0.199 Sum_probs=449.4
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAK-SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 65 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.+++++++++ ++|+.++++++++++.++..++.|++++.++|....... ..+ .+++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GSL----FSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hHH----HHHHHHHHHHHHHHHHHHH
Confidence 4678888889 999999999999999999999999999988874321110 111 1123344455677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
.....+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++. .+.+.+.++++++++++++++++|.+
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999886 47788888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchH--HHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEK--LEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++|+.+++..++.++.++...+..+..++.++.+.|.++|++++|+|+.++ ...+++.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988888888888888888888888889999999999999999999999999954 556788888877777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+.......+..++..+...+++++|++. |.+|+|.++++..+...+..|+..+.+.+..++++.++.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444433433333333333344444443 7999999999999999999999999999999999999999999998632
Q ss_pred CCc-cC---CC-CCc---cCCCCCccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 382 PLI-ST---SG-GKF---FSHSLKGEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 382 ~~~-~~---~~-~~~---~~~~~~~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++ +. +. ... +.....+.|+++||+|+|++.. ++++|+|+||++++||++|||||||||||||+++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211 10 00 000 1111235799999999997531 24699999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCc
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl 531 (644)
|+|++|+|.+||+|+++++.+++|+++++|+||+++|++|+++|+ .|+ +++++++++++.+++++++.++|+||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEH---ASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccc---hhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999995 343 78999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH-H-cCCceEEEEccCchHHhhcCEE
Q psy5743 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK-L-IEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 532 ~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~-~-~~~~TvI~IaHrl~~i~~aD~I 609 (644)
||. .+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+ . .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 995 88999999999999999999999999999999999999999988743 3 4689999999999999999999
Q ss_pred EEEeCCeEEEe
Q psy5743 610 CVLDKGKIVEI 620 (644)
Q Consensus 610 ivl~~G~ive~ 620 (644)
++|++|+++|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=681.39 Aligned_cols=528 Identities=17% Similarity=0.236 Sum_probs=419.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMA-VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
++.+++++++.++..++++++.+++.++ .|++.++++|.+... . ..+..+.++ .++..+..+++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~-~----~~~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS-L----LVLPEFLGL----LLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c----hHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566788999999999999998888877 478888999865321 1 111111111 12223466788888999
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 148 SAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS 227 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 227 (644)
.+.++..++|.++|++++++|+++|+++++|++++|+++|++.+..++. .+..++.++++++++++++++++|.+++++
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~ 153 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVT 153 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 567788888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 228 LIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQE---KLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 228 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+.....
T Consensus 154 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 154 AIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 99999988888899999999999999999999999999999999996 4433 3556777777777665555544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........+...+...+.+++++.. +..+.+.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3333222222212122222222221 2234444444444455567899999999999999999999999997654322
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+.... .+ .+..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 310 ~~~~~-~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 310 EFPRP-QA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred ccccc-cc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 11111 11 112347999999999984 357999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++++||+||+++|++|++|| + ++ .++++++++++.+++.+++. .|+|. .+|.+|||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~---~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSg 452 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KP---ANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSK 452 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-Cc---hHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCH
Confidence 9999999999999999999999999999999 3 33 78888988888888776654 24442 25899999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEe-c
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI-G 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~-G 621 (644)
||||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999997654 48999999999999999999999999999987 5
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
++.+-.
T Consensus 533 ~~~~~~ 538 (547)
T PRK10522 533 EERDAA 538 (547)
T ss_pred Cchhhh
Confidence 665543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=736.49 Aligned_cols=548 Identities=19% Similarity=0.244 Sum_probs=458.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+.+++.+++.++.++++.++..++.++.|++++.++|.+....... ...+.++++++++.++.+++.....+...+.+
T Consensus 309 ~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1522)
T TIGR00957 309 KVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD--WQGYFYTGLLFVCACLQTLILHQYFHICFVSG 386 (1522)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888988999999999999999999999999875432211 11122333344444455555555566788899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++++.++. ..++.++..++.+++++++++..-.+.++++++
T Consensus 387 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~ 465 (1522)
T TIGR00957 387 MRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVA 465 (1522)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999854 678888888888777777666544556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.++.++.+++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+..........
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 545 (1522)
T TIGR00957 466 VMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTF 545 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999999999999999999999999999999999999999999888877766555554433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSY--ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTS 387 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~--g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~ 387 (644)
.. .. ....+.++.++++.+.. +.++.+.+++.+.++..+..|+..++..+..++++.++++|+.++++.+++++..
T Consensus 546 ~~-~~-~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 623 (1522)
T TIGR00957 546 TW-VC-TPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDS 623 (1522)
T ss_pred HH-HH-HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 21 11 12223334456666663 5789999999999999999999999999999999999999999999866542221
Q ss_pred CCCccCC-CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 388 GGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 388 ~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
....... ...+.|+++|++|+|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 624 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 624 IERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred ccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 1110111 11236999999999975 246799999999999999999999999999999999999999999999998
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|+||||+||+|++||+|||.+|.+ .++++..++++.+++.+++..+|+|++|.+||+|.+|||||
T Consensus 700 ----------~i~yv~Q~~~l~~~Ti~eNI~~g~~----~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQ 765 (1522)
T TIGR00957 700 ----------SVAYVPQQAWIQNDSLRENILFGKA----LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765 (1522)
T ss_pred ----------EEEEEcCCccccCCcHHHHhhcCCc----cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHH
Confidence 7999999999999999999999965 57888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH---HcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK---LIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~---~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
||||+||||+|++|+|++||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|++.|+|
T Consensus 766 kqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCH
Confidence 9999999999999999999999999999999999999853 4578999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhh
Q psy5743 624 AHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q 641 (644)
+|++++ ++.|+++++.+
T Consensus 846 ~~l~~~-~~~~~~l~~~~ 862 (1522)
T TIGR00957 846 QELLQR-DGAFAEFLRTY 862 (1522)
T ss_pred HHHHhc-chhHHHHHHhh
Confidence 999986 68899887643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-74 Score=704.52 Aligned_cols=541 Identities=21% Similarity=0.294 Sum_probs=459.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++..+++.++..++.++.|++++.+++++....... ....+.++++++++.++..++.....|...+.+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 150 (1490)
T TIGR01271 72 NALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLG 150 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888899999999999999999874221111 112233444555556666677777778888899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...+...+|+|+++++...+++.++|+++|++++|++++.+.+. .++.+|..++.+++++++++...++.+++.++
T Consensus 151 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~ 229 (1490)
T TIGR01271 151 MQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLA-LAHFVWIAPLQVILLMGLIWELLEVNGFCGLG 229 (1490)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 55777888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.+++.+.+++..+..+++.+.+.|.++||++||+|+||+.+.+++.+..++..+...+..........
T Consensus 230 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 309 (1490)
T TIGR01271 230 FLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSS 309 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877777666655433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI-GGLSNFYSELNKGLGACHRLWEIMEREPLISTSG 388 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l-~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~ 388 (644)
+..+ ....+.++.++++.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.+++..++.....
T Consensus 310 ~~~~--~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~- 385 (1490)
T TIGR01271 310 AFFF--SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE- 385 (1490)
T ss_pred HHHH--HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc-
Confidence 3222 223345566677776654 68999999999999998887 479999999999999999999999865432111
Q ss_pred CCccCCCCCccEEEEEEEEEcCCCC-------------------------------CCccccceeEEEeCCCEEEEECCC
Q psy5743 389 GKFFSHSLKGEIDFNNIRFSYPSRP-------------------------------DAVILNDLSLKIQSGSMTSVIGSS 437 (644)
Q Consensus 389 ~~~~~~~~~~~I~~~~vsf~Y~~~~-------------------------------~~~vL~~isl~i~~G~~vaIvG~S 437 (644)
. ......|+++|++|.|+... .+++|+|+||+|++|++++|+||+
T Consensus 386 ~----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~ 461 (1490)
T TIGR01271 386 Y----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGST 461 (1490)
T ss_pred c----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCC
Confidence 0 11223599999999996310 146899999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHH
Q psy5743 438 GSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517 (644)
Q Consensus 438 GsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~ 517 (644)
|||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||.+ .++++..++++.
T Consensus 462 GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~----~~~~~~~~~~~~ 524 (1490)
T TIGR01271 462 GSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS----YDEYRYTSVIKA 524 (1490)
T ss_pred CCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc----cchHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999954 567788889999
Q ss_pred HhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHH-HHHHHcCCceEEEE
Q psy5743 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS-AIEKLIEGKTVLTI 596 (644)
Q Consensus 518 a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~~~~TvI~I 596 (644)
+++.+++..+|+|++|.|||+|.+|||||||||+||||+|++|+|+|||||||+||+++++.+.+ ++.++.+++|+|+|
T Consensus 525 ~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilv 604 (1490)
T TIGR01271 525 CQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604 (1490)
T ss_pred HhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997 46777789999999
Q ss_pred ccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 597 aHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
||+++.+..||+|++|++|+|++.|+|+++.+. ++.|.+.+
T Consensus 605 tH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLL 645 (1490)
T ss_pred eCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHH
Confidence 999999999999999999999999999999875 56676665
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-74 Score=653.36 Aligned_cols=533 Identities=16% Similarity=0.167 Sum_probs=449.3
Q ss_pred HHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKR-----KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCN 138 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 138 (644)
..+++++++++|+|+ .++..+++.++.+++.+..|++.+.++|.+...+...+...+..+.+++++..++..+..
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~ 156 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIK 156 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888887 577778888888999999999999999998765433333323344445555666677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 139 FGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFI 218 (644)
Q Consensus 139 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 218 (644)
++..++......++...++..+|++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999998888888888886 7899999999999999999999999999999888888887775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q psy5743 219 -ISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELA 297 (644)
Q Consensus 219 -~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 297 (644)
.+|.+++++++..|+..++.+++.+++.+..++..+..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCcCHhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q psy5743 298 KKEALAKGVFFGFTGLSGNA--IILSVLYYGGVMVS-Y----ETITVGNLSS-FLLY---AAYIGISIGGLSNFYSELNK 366 (644)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~--~~~~vl~~g~~~v~-~----g~~t~g~l~a-~~~~---~~~~~~~l~~l~~~~~~~~~ 366 (644)
.+..+....+..+..++... ..+..++.|...+. . |.+|+|.+++ |..+ +..+..|+..+.+.+.++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888877766542 23333333442332 2 7899998776 5555 56678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccC---------C-CC-------------CccCCCCCccEEEEEEEEEcCCCCCCccccceeE
Q psy5743 367 GLGACHRLWEIMEREPLIST---------S-GG-------------KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSL 423 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~---------~-~~-------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl 423 (644)
+.++.+|+.++++.+++... . .+ ........+.|+++||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999975432110 0 00 0000112346999999999974 3479999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC-
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND- 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~- 502 (644)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 5689999999999999999999997421
Q ss_pred ---CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 503 ---SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 503 ---~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
....++++++++++.+++++++.+ |.||||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 012578899999999999999877 999999987 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999875 8999999999999999999999973
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-72 Score=687.92 Aligned_cols=552 Identities=20% Similarity=0.254 Sum_probs=465.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+.-++..++.+++.++..+++.++..++.++.|++++.+++.+.... .. ......++++++++.++..++...+.+.
T Consensus 231 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~-~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 308 (1560)
T PTZ00243 231 RLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN-AT-WGRGLGLVLTLFLTQLIQSVCLHRFYYI 308 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666788999999999999999999999999999999764322 11 1222334444555566677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..+.+.++...+...+|+|+++++...+. +.++|+++|++++|++++.+++ ..++.++..++.+++++++++.+.++
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~ 387 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGW 387 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999988776 5689999999999999999987 56788899999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
.+++.++++++.+++..++.++....+++..+..+++.+.+.|.++||++||.++||+.+.+++.+..++..+...+...
T Consensus 388 ~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~ 467 (1560)
T PTZ00243 388 CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
...+...+......+ +.++.++++.+..|.+|++.+++++.+++.+..|+..++..+..+.++.++++||.+|++.++
T Consensus 468 ~~~~~~~~~~~~p~l--~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e 545 (1560)
T PTZ00243 468 ARVATSFVNNATPTL--MIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDN 545 (1560)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 665554444333222 233356778888999999999999999999999999999999999999999999999997654
Q ss_pred Ccc----C--C---------C--C----------------Ccc-------------------------CCCCCccEEEEE
Q psy5743 383 LIS----T--S---------G--G----------------KFF-------------------------SHSLKGEIDFNN 404 (644)
Q Consensus 383 ~~~----~--~---------~--~----------------~~~-------------------------~~~~~~~I~~~~ 404 (644)
... + . . . +.+ .....+.+.++|
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1560)
T PTZ00243 546 ATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVED 625 (1560)
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccc
Confidence 110 0 0 0 0 000 001123577888
Q ss_pred EEEEcCCC-------------------------------------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHH
Q psy5743 405 IRFSYPSR-------------------------------------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML 447 (644)
Q Consensus 405 vsf~Y~~~-------------------------------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l 447 (644)
++|+++.. .++++|+|+||+|++|++++|+||||||||||+++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~ 705 (1560)
T PTZ00243 626 TDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHH
Confidence 88876410 12468999999999999999999999999999999
Q ss_pred HhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh
Q psy5743 448 LLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 448 L~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l 527 (644)
|+|+++|++|+|.+++ +|+||+|+|++|++||+|||.++.+ .+++++.++++.++++++++.+
T Consensus 706 i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l 768 (1560)
T PTZ00243 706 LLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE----EDAARLADAVRVSQLEADLAQL 768 (1560)
T ss_pred HhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHh
Confidence 9999999999998753 8999999999999999999999864 4677888999999999999999
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHH-HHHHcCCceEEEEccCchHHhhc
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA-IEKLIEGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~~~~TvI~IaHrl~~i~~a 606 (644)
|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+. +....+++|+|+|||+++.+..|
T Consensus 769 ~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 769 GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred hccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988777654 44555789999999999999999
Q ss_pred CEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 607 NQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 607 D~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+|++|++|++++.|+|+|+++. +.|.++...
T Consensus 849 d~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 849 DYVVALGDGRVEFSGSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred CEEEEEECCEEEEecCHHHHHhC--hHHHHHHHh
Confidence 99999999999999999999864 568877654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=461.66 Aligned_cols=237 Identities=27% Similarity=0.460 Sum_probs=223.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 369999999999742 4579999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++||||+|.+|++|++||+....+ .++++++++++.+++.+++.++|.||+|.++|+|.+||||||||++||||++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999975432 5789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|+|++|||||++||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|++++|+++ .++|+++
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~ 233 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQA 233 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHH
Confidence 999999999999999999999999999988788999999999999999999999999999999999999986 5888888
Q ss_pred HHhh
Q psy5743 638 MKYQ 641 (644)
Q Consensus 638 ~~~q 641 (644)
+...
T Consensus 234 ~~~~ 237 (275)
T cd03289 234 ISPS 237 (275)
T ss_pred Hhhc
Confidence 8643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=452.83 Aligned_cols=249 Identities=28% Similarity=0.443 Sum_probs=208.3
Q ss_pred HHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 371 CHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 371 ~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..|+.+++..++..... ....++..+.|+++|++|+|++ ..+++|+|+||+|++||++||+|+||||||||+++|+|
T Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 54 KAELKQFLNKKKTQVDL--LKEDFNHANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred chhhhhccccccccccc--ccCCCCcCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34676766543211100 0112345567999999999974 24579999999999999999999999999999999999
Q ss_pred cCC-----CCCcEEEECCccCC--CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHH-----HHHHHHH
Q psy5743 451 LYD-----PQNGKILIDGVDIK--ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI-----IHAAKEA 518 (644)
Q Consensus 451 ~~~-----p~~G~I~idg~~i~--~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i-----~~a~~~a 518 (644)
+++ |++|+|.+||+++. ..+...+|+.++||||+|++|++|++|||.|+.+. ...++++. .++++.+
T Consensus 131 ~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~ 209 (329)
T PRK14257 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRN-NGINDRKILEKIVEKSLKSA 209 (329)
T ss_pred cccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHh-cCCChHHHHHHHHHHHHHHc
Confidence 997 57999999999997 44567889999999999999999999999987321 12344443 4455555
Q ss_pred hhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 519 ~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++ +.++++.++++|.+||||||||++||||++++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|||
T Consensus 210 ~L-------~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH 282 (329)
T PRK14257 210 AL-------WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282 (329)
T ss_pred CC-------cchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 54 44567889999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CchHHhh-cCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 599 RLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 599 rl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
+++++.. ||+|+||++|+|+|.|+++++...+
T Consensus 283 ~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 283 SMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999987 9999999999999999999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=397.52 Aligned_cols=220 Identities=35% Similarity=0.535 Sum_probs=191.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC-CCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~i 478 (644)
|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+.+
T Consensus 3 i~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 89999999996 357999999999999999999999999999999999999999999999997773 34889999999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+|+|+..||. -|+.||++++--.-...+.+ +-.+.++++|+.|-....| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 99999999997 79999999872110112333 3344567777766665555 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||.-+|+++++||||||||++.-..+.+.+.++.+ +.|.|+|||.+...+. ||||+.||+|+|+|+|+++++..+++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999998864 7899999999999966 89999999999999999999998755
Q ss_pred cH
Q psy5743 632 SM 633 (644)
Q Consensus 632 ~~ 633 (644)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-52 Score=417.29 Aligned_cols=236 Identities=46% Similarity=0.769 Sum_probs=219.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999742 357999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++++|+.|++|||.++.+. .+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++.+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPG---MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EEcCCchhccchHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999987543 456777788888889999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..+++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999999999999999999999998778999999999999999999999999999999999999986 688988876
Q ss_pred h
Q psy5743 640 Y 640 (644)
Q Consensus 640 ~ 640 (644)
+
T Consensus 236 ~ 236 (237)
T cd03252 236 L 236 (237)
T ss_pred c
Confidence 4
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=420.78 Aligned_cols=503 Identities=18% Similarity=0.206 Sum_probs=392.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy5743 88 LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQ 167 (644)
Q Consensus 88 ~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 167 (644)
++++...+......+.+.|.+...+. ..+...+.++..+..+...+...+.|+......+...-+...+.++-+..
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~----~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~ 132 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDL----AAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDP 132 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444455555666666544332 22333334444455555566777888888888888888888888888877
Q ss_pred ChhhhhccChh------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q psy5743 168 ETAYFDKHKTG------ELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFII---------------SSKLALI 226 (644)
Q Consensus 168 ~~~~~~~~~~G------~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~---------------~~~l~li 226 (644)
. .+|.-...| ..=+|+..|+..+-+........++.++++++...++++-. ...+.++
T Consensus 133 ~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~ 211 (604)
T COG4178 133 R-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWA 211 (604)
T ss_pred C-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHH
Confidence 6 444433333 23489999999888887777888888888888777777733 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
+++..+...++..+++|++-+++.+..+..+.....+.-.-++.+.|-.|+-|+.+.++.........+...+.......
T Consensus 212 ~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~ 291 (604)
T COG4178 212 VIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIR 291 (604)
T ss_pred HHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555566678899999999999999999999999999999999999999999999988888887766666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP---- 382 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~---- 382 (644)
+..+....+.+..++-+..++-....|.++.|.++.....++++...++.+.+.+..+..-.+...|+.++...-+
T Consensus 292 l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~ 371 (604)
T COG4178 292 LTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQM 371 (604)
T ss_pred hHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5555444444444555666777788999999999999999999999999999999999999999999999874321
Q ss_pred --CccCCCCCccC--CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 383 --LISTSGGKFFS--HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 383 --~~~~~~~~~~~--~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+.+........ ...+..|+++|++..-|+. .+.++++||+++|||.+-|.||||||||||++.|.|++|--+|+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 372 DTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred cccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 11111000000 1114579999999999863 47899999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
|-.-.. ..+-|+||.|++-.||+||=|+|-++. +.++|+++.+++.+++|.++++++.+- +. =
T Consensus 450 I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~-~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W 512 (604)
T COG4178 450 ISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAA-PDFSDAELVAVLHKVGLGDLAERLDEE-DR----W 512 (604)
T ss_pred eecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCC-CCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----H
Confidence 876521 158999999999999999999998765 238999999999999999999987532 22 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
..-|||||||||++||.++++|++++|||+|||||+++|..+.+.+++.+++.|+|-|+||.......++.+.+++
T Consensus 513 ~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 4579999999999999999999999999999999999999999999999999999999999999998888777654
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=417.50 Aligned_cols=241 Identities=34% Similarity=0.544 Sum_probs=223.4
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
..+.|+++|++++|++ .+.++|+|+||+++|||.++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 3467999999999975 235799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++||+|++.+|++|++||+.+... ..+++++++++..++.+++..+|.|++|.+++.+.+||||||||++||||
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK----CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC----CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999976421 35677888899999999999999999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
++++|+++||||||++||++++..+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|+
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 250 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHH
Confidence 99999999999999999999999999999987778999999999999999999999999999999999999887677899
Q ss_pred HHHHhh
Q psy5743 636 KLMKYQ 641 (644)
Q Consensus 636 ~l~~~q 641 (644)
+++..|
T Consensus 251 ~~~~~~ 256 (257)
T cd03288 251 SLVRTD 256 (257)
T ss_pred HHHhcc
Confidence 988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=385.43 Aligned_cols=521 Identities=17% Similarity=0.228 Sum_probs=382.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMA-VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
+....+++++.++..+.+++++++.... ..++.+.++. .++... ..+ ..++++.++-.+.+.+.......
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e----~~~~~~-~~l----~~f~~llllf~~ss~is~lg~t~ 74 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIE----TADTSL-LVL----PEFLGLLLLFMVSSLISQLGLTT 74 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccce-eeH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688999988888877777655432 2333333333 222111 111 12222333333455666777788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 148 SAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS 227 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 227 (644)
.++.+...+|..+.+|++.-|+.-+++-+++.++.++++|+..|. +-...++.+.++.+..+++.+.+.|+||.+.++.
T Consensus 75 ~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 75 LGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999999999999999999999999999999999887 5556677788888888888999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 228 LIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKL--EMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 228 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
++.+++.++...+...+..+..+...+..+++.+..+..+.|.+++++.....+ ..+.|....+...+ +..+.+.
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~ 230 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhH
Confidence 888888888888888888889999999999999999999999999998754322 12222222222222 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVS-YETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.......+ +++....++....|+.. -+.-+.....++.+....+..|+.+....++.+.++.++++++.++-..|+..
T Consensus 231 f~~la~~~-~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 231 FHLLAVNW-SNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 11111111 11222222222222322 23334444555666666788899999999999999999999999986644322
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+-... ...|.-..|+++||.|+|++. ..-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++||.
T Consensus 310 -~~~~~-q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 310 -DFPRP-QAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred -cCCCC-CcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 11111 111223469999999999853 25578899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+++.=+++++|+-++-|.-|-|||..++ | ++. .++.+.+.+.++...+..-. ++.+|--+ -..||-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll------~-~e~-~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLSt 451 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLL------G-PEG-KASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLST 451 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhh------C-Ccc-CCChHHHHHHHHHHHHhhhh-cccCCccc-----cccccc
Confidence 9999999999999999999999999753 3 331 26788887776665543221 12222222 247999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||.|+|+-=|++-+.||++|||=-+.=|+.=.+.+.+.+...+ .|||++.|||+-....+|||++.|++|+++|.-
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999988888775543 399999999999999999999999999999763
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=383.74 Aligned_cols=223 Identities=34% Similarity=0.532 Sum_probs=201.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-----cEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-----G~I~idg~~i~~--~~ 470 (644)
..++++|+++.|. ++.+|+|||++|++++.+|++||||||||||++++.|+.+..+ |+|.++|+||.+ +|
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 4579999999999999999999999999999999999999876 999999999976 57
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.-++|++||+|+|.|--|..||+||++||-.-.. ..-||.++++++.|+|+|.+.+- +.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHH
Confidence 9999999999999999999999999999943111 12245678899999999988642 4577889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++|||||.-+|+||+|||||||||+.+..+|.+.|.++.++-|+|+|||.+.-. +-+|+...+-.|+++|.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999876 66899999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=400.85 Aligned_cols=221 Identities=35% Similarity=0.561 Sum_probs=191.8
Q ss_pred EEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 400 IDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
|+++||+..|+.. ....+|+||||+|++||+.+|+|.||+|||||++++.++-.|++|+|++||+|+..++... .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999852 1356899999999999999999999999999999999999999999999998888887655 5
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
|++||+++|++.|++ -|+.+|++|.-+-. ..+.+ ++.+.++.+|+.|+-.+.| .+||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELA-GVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 778999999999998 89999999865421 23344 4555667777766554444 7899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||..+|+||+.||||||||++|.+.|.+.|++.- -+-|+++|||.++.+++ |||+.||++|+++|+|+-.++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999997753 37899999999999965 999999999999999999999
Q ss_pred hcCCCc
Q psy5743 627 IKNPNS 632 (644)
Q Consensus 627 l~~~~~ 632 (644)
..+++.
T Consensus 230 F~~Pk~ 235 (339)
T COG1135 230 FANPKH 235 (339)
T ss_pred hcCcch
Confidence 876543
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=405.26 Aligned_cols=236 Identities=47% Similarity=0.756 Sum_probs=219.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999964 246999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|++|++||+.++.++ .+++++.++++..++.+++..+|.|+++.+......||||||||++|||||+++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998654 566778888888899999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+++...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.++ .+.|..++.
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 9999999999999999999999999988778899999999999999999999999999999999999875 677887776
Q ss_pred hh
Q psy5743 640 YQ 641 (644)
Q Consensus 640 ~q 641 (644)
.+
T Consensus 235 ~~ 236 (236)
T cd03253 235 AQ 236 (236)
T ss_pred cC
Confidence 53
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-51 Score=388.24 Aligned_cols=221 Identities=35% Similarity=0.542 Sum_probs=195.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+|+|||++|. ++.+++|+||+|++||++.++|||||||||++|++.|+++|++|+|++||.|+++++.-.+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhcc--chhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYG--FVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~--~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
||-|..-||. -||.|||++- |.-...+.++ +.+.++.++++. |..+.| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999996 7999999975 4323345554 455666777652 555555 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||..+|+|+++|||+||||+-+...+++-+.++.+ ++|+|+|||+.+. ++-||||.+|++|+|++.|++++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999877543 8999999999885 688999999999999999999999987
Q ss_pred CCcHHH
Q psy5743 630 PNSMFN 635 (644)
Q Consensus 630 ~~~~y~ 635 (644)
+...|-
T Consensus 227 Pan~FV 232 (309)
T COG1125 227 PANDFV 232 (309)
T ss_pred ccHHHH
Confidence 765554
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-50 Score=401.42 Aligned_cols=226 Identities=50% Similarity=0.829 Sum_probs=212.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|++|++||+.++.++ ..++++.++++..++.+++..+|.|+++.++.....||||||||++|||||++
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPN---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998654 45678888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999999988778999999999999999999999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=403.20 Aligned_cols=233 Identities=50% Similarity=0.821 Sum_probs=215.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+.++.++ .+.+++.+.++..++.++++.+|.|+++..+.....||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998653 456777788888899999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+. .+.|+.+
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 9999999999999999999999999998788999999999999999999999999999999999999876 5666543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=402.45 Aligned_cols=237 Identities=57% Similarity=0.896 Sum_probs=216.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++..+.++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+.++.+. ...+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998653 356677778888888899999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++.+. .+.+++++.
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 9999999999999999999999999887778999999999999999999999999999999999998875 566666665
Q ss_pred h
Q psy5743 640 Y 640 (644)
Q Consensus 640 ~ 640 (644)
.
T Consensus 237 ~ 237 (238)
T cd03249 237 A 237 (238)
T ss_pred c
Confidence 4
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=398.20 Aligned_cols=220 Identities=43% Similarity=0.663 Sum_probs=207.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++++|++. ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999742 3579999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++|++|++.+|++|++|||.+..+ .+.+++.++++..++.+++.++|.|++|..++.+.+||||||||++||||++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987643 5678899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999998877899999999999999999999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=414.45 Aligned_cols=228 Identities=31% Similarity=0.486 Sum_probs=193.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997422 347999999999999999999999999999999999999999999999999999988755 57
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.|+||+|++.+|. .|++||+.++... ...+ ++++.++++..++.++..+ ....||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV 149 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRV 149 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 89999999999995 7999999986421 0122 3456677777777655433 3468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998754 7899999999999854 9999999999999999999998
Q ss_pred cCCCc-HHHHHHH
Q psy5743 628 KNPNS-MFNKLMK 639 (644)
Q Consensus 628 ~~~~~-~y~~l~~ 639 (644)
..+.. ..++++.
T Consensus 230 ~~p~~~~~~~~~~ 242 (343)
T TIGR02314 230 SHPKTPLAQKFIR 242 (343)
T ss_pred cCCCcHHHHHHHh
Confidence 65433 3344443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=389.96 Aligned_cols=216 Identities=36% Similarity=0.530 Sum_probs=194.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++|+|+ ++++|+|+||+|++||+++|+||+|||||||+|+|+|+++|.+|+|++||+|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCCcccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEP-TLFSGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~-~Lf~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|||||++ .-|.-|++|=+.+|+-.. .+.|++.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999995 567789999999997431 12344568889999998776433 2346999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.|||||.++|+||+||||||+||..+.-.+++.++++.+ ++|+|+|.|++.. .+.||++++|++|+++..|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999999863 6999999999976 5889999999999999999999988
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 5
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=389.38 Aligned_cols=219 Identities=45% Similarity=0.716 Sum_probs=203.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+|+++|++++|++. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 35699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|..|++||+.++.+. .+++++.++++..++.+.+...|.|++|.+.+....||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987543 45677888899999988899999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
+|+++||||||++||.++...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999987678999999999999999999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=408.48 Aligned_cols=222 Identities=31% Similarity=0.469 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC-------
Q psy5743 399 EIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL------- 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------- 469 (644)
-|+++|++|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccC
Q psy5743 470 ---------DPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGE 537 (644)
Q Consensus 470 ---------~~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige 537 (644)
+...+|+.++||+|+| ++|++|++|||.++... ...+.++..+.++ ++++.+ |++ ...++
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-LGVKKSEAKKLAK-----FYLNKM--GLDDSYLER 172 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh-cCCCHHHHHHHHH-----HHHHHc--CCChhHhcC
Confidence 3567899999999998 79999999999987321 1134444322111 223333 453 45677
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG 615 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G 615 (644)
.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 478999999999977 679999999999
Q ss_pred eEEEecChhHHhc
Q psy5743 616 KIVEIGSYAHLIK 628 (644)
Q Consensus 616 ~ive~Gt~~eLl~ 628 (644)
++++.|+++++.+
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=385.25 Aligned_cols=217 Identities=36% Similarity=0.583 Sum_probs=196.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC-CCChHHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~ 477 (644)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999864 68999999999999999999999999999999999999999999999999999 5889999999
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+|+|.|+| ++|..||.|.++||-.+ ...+.++ +.++++.+++.++..+. -.+||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRva 148 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVA 148 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHH
Confidence 99999999 89999999999999654 3455555 55667777776664443 3689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~--~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||.+|..+|++||||||||+||+.+.+.+.+.++++.++ +|+|+|||+++.+.. ||++++|++|+++.+|+++|+.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999999998654 799999999999977 99999999999999999999986
Q ss_pred C
Q psy5743 629 N 629 (644)
Q Consensus 629 ~ 629 (644)
+
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=369.68 Aligned_cols=228 Identities=32% Similarity=0.541 Sum_probs=198.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
..|++++|+++|. ++.|++||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++.++ +
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3599999999995 467999999999999999999999999999999999999999999999999999999754 5
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccc-hhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA----AKEANAYGF-VIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~-i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+++|+++|..-||+. ||+||+.|--.+....+++++.+. ++.+|+... .+.+| +.||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8899999999999985 999999995433344667766653 456666555 23344 689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|+|||||+.-||+|+++|||||+||+.+...+.+.|+++.+ +.|+|+|||+++++. -||+|+++.||+|+..||++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999998877653 789999999999875 579999999999999999999
Q ss_pred HhcCCCcHHHHHHH
Q psy5743 626 LIKNPNSMFNKLMK 639 (644)
Q Consensus 626 Ll~~~~~~y~~l~~ 639 (644)
+.+.++...++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99986666666654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=400.34 Aligned_cols=220 Identities=36% Similarity=0.602 Sum_probs=194.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+.+|++. . +++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+|||.++++++|+. +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2 899999999999999999999999999999999999999999999999999999976 789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+|+|+.-||.- |++|||+|+-.... ..-++++.++++..++.+.+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999985 99999999965321 123667788888888888877766 579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
||.++|++++||||+|+||++........|+++.+ +.|+|+|||+... ...||||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999988888777776543 5799999999665 57799999999999999999999998765
Q ss_pred cHH
Q psy5743 632 SMF 634 (644)
Q Consensus 632 ~~y 634 (644)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=389.86 Aligned_cols=221 Identities=32% Similarity=0.517 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 469999999999999999999999999999999999999999999999999988765 57888
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++||+|++.+|.+ |++||+.++.......+. +++.++++..++.++. ......||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 999999986321001232 3345555555554332 2333579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 789999999999876 499999999999999999999886
Q ss_pred CCCcHHH
Q psy5743 629 NPNSMFN 635 (644)
Q Consensus 629 ~~~~~y~ 635 (644)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 4 34443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=385.92 Aligned_cols=219 Identities=49% Similarity=0.821 Sum_probs=199.6
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
..+.|+++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34569999999999753234699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++|++|++.+|++|++||+.++... .+.+++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999987543 34555666666677888999999999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++++|+++||||||++||+++...+.+.|.++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999998777899999999999999999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=372.77 Aligned_cols=209 Identities=34% Similarity=0.482 Sum_probs=174.8
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HH-
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YL- 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~l- 474 (644)
++++||+..|.... ...+|+++||+|++||+|||+||||||||||+++|.|+..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997432 24689999999999999999999999999999999999999999999999999999853 34
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhc----CCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFS-GTIYENILY----GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~-gTIreNI~~----g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
|++||+|+|+..|+. -|++|||.+ .... .....+++.+.++..++.+... ......||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~-~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS-AGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-hhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHH
Confidence 446999999999886 599999994 3211 0012344555555556554333 12346899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
+||||||..+|+|++.||||+|||+++.+.|++.+.++.+ ++|+|+|||++.....|||++.|+||++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999998743 689999999999999999999999999543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=386.22 Aligned_cols=215 Identities=36% Similarity=0.595 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----CCCCcEEEECCccCCCCC--hH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-----DPQNGKILIDGVDIKELD--PM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-----~p~~G~I~idg~~i~~~~--~~ 472 (644)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 46999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|++++|++|++.+|+.|++||+.++....... .++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 7888999999999999999999998864211001 23456667777776554333221 5789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999999866689999999999875 5999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=387.29 Aligned_cols=221 Identities=30% Similarity=0.500 Sum_probs=194.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 475 (644)
.|+++|+++.|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.+||+++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999985 6999999999999988888889
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|+.|++||+.++.... ....++++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 9999999999999999999998763110 01223456677788777665543 24556789999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+||||++++|++++|||||++||.++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999874 6999999999999999999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=393.26 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=191.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999743234699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+| .++..|++|||.++.... ..+ ++++.++++..++.++.... ..+||||||||++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~l 151 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAI 151 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHH
Confidence 9999998 467789999999874321 123 34566677777765544333 36899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998753 7899999999999989999999999999999999988754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=371.70 Aligned_cols=198 Identities=32% Similarity=0.504 Sum_probs=177.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+++++|+.+|++ ..+|+||||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999974 57999999999999999999999999999999999999999999999999885544 389
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++.||. -|++||+.++-+... ...++++.++++.+|+.+|-.+.| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 899999999976311 112456888899999999887777 579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKG 615 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G 615 (644)
||..+|+||+||||+||||+.|....++.+.++.+ ++|+++|||+.+. +.-+|||+||.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999988764 5999999999886 5789999999994
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=374.91 Aligned_cols=204 Identities=39% Similarity=0.622 Sum_probs=184.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+.|+++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4569999999999742 347999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
.++||+|++.+|++|++||+.+..+ .+++++.++++ +.+....|||||+||++||||+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~----~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE----YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC----CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987632 34555544443 3456789999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
+++|+++||||||++||+++...+.+.|++..+++|+|+|||+++.+..||++++|++|++++.|++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999998778999999999999988999999999999998863
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=374.27 Aligned_cols=220 Identities=31% Similarity=0.504 Sum_probs=191.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|+|.+ . ++|+||||+|++|++++|+||+|||||||+|+++|+++|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4999999999964 3 59999999999999999999999999999999999999999999999998877654 5689
Q ss_pred EEEecC---CCCCcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 479 GSVSQE---PTLFSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 479 ~~V~Q~---~~Lf~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|||||. ++=|.-||+|=+.+|+.... ..+.+++.+|++.+++.++. +-+||| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHH
Confidence 999994 57899999999999864321 13468999999999988763 445654 9999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|+.|||||..+|++|+|||||+++|+.++..|.+.|.++.+ ++|+++|||+++.+. .+|+|+.|. ++++..|+.++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999865 899999999999985 599999995 678899999998
Q ss_pred hcCCCcHHHHHH
Q psy5743 627 IKNPNSMFNKLM 638 (644)
Q Consensus 627 l~~~~~~y~~l~ 638 (644)
+.. ..+.+.+
T Consensus 226 ~~~--~~l~~~~ 235 (254)
T COG1121 226 LTE--ENLEKAF 235 (254)
T ss_pred cCH--HHHHHHh
Confidence 853 3444443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=384.65 Aligned_cols=241 Identities=31% Similarity=0.470 Sum_probs=206.7
Q ss_pred HHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 372 HRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 372 ~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.+.+++..++++... .+ .....+.|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~-~~--~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND-RK--HSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc-cc--cCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567777765543221 11 22344569999999952 3599999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCc
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl 531 (644)
++|++|+|.++| .++|++|++++|++|++||+.++.. ..+.++.++++.+++.+++..+|.++
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~l~~~~~~~ 149 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS----YDEYRYKSVVKACQLEEDITKFPEKD 149 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc----cCHHHHHHHHHHhCCHHHHHhccccc
Confidence 999999999999 5999999999999999999998743 23456677788888888899999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEE
Q psy5743 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 532 ~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|.+++.+..||||||||++||||++++|++|||||||++||+++...+.+.+ .++.+++|+|+|||+++.+..||+|+
T Consensus 150 ~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~ 229 (282)
T cd03291 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229 (282)
T ss_pred cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999888754 55556899999999999999999999
Q ss_pred EEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 611 VLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 611 vl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|++|++++.|+++++.+. ...|.+.+
T Consensus 230 ~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 230 ILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 9999999999999999864 34555444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=400.78 Aligned_cols=223 Identities=33% Similarity=0.530 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++|++++|++. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999731 1357999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++|+||+|++.+|. .|++||+.++.... ..+. +++.++++..++.++ .......||||||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRV 149 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 89999999999986 69999999863210 1222 334455555554333 3334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999998
Q ss_pred cCCCcHH
Q psy5743 628 KNPNSMF 634 (644)
Q Consensus 628 ~~~~~~y 634 (644)
..+...+
T Consensus 230 ~~~~~~~ 236 (343)
T PRK11153 230 SHPKHPL 236 (343)
T ss_pred hCCCcHH
Confidence 6533333
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=401.76 Aligned_cols=220 Identities=27% Similarity=0.458 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 35699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalA 146 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMG 146 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999996 69999999975321 122 245667777777766655554 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.+++
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999988754 68999999999866 679999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 227 ~~~~ 230 (356)
T PRK11650 227 ASTF 230 (356)
T ss_pred ccHH
Confidence 4444
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=380.53 Aligned_cols=225 Identities=38% Similarity=0.572 Sum_probs=192.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|+.|++||+.++... ....++++.+.++..++.+ .........||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPML-KGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhh-cCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999986421 1122345555555555421 11234567899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
+|+++||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++...+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 789999999999976 5999999999999999999999865333454
Q ss_pred HH
Q psy5743 636 KL 637 (644)
Q Consensus 636 ~l 637 (644)
+.
T Consensus 229 ~~ 230 (241)
T PRK14250 229 KL 230 (241)
T ss_pred HH
Confidence 43
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=345.91 Aligned_cols=212 Identities=33% Similarity=0.522 Sum_probs=190.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|.+++|.|+|.. .+ -..+++|++||+|||+||||||||||++++.||..|.+|+|.|||+|.....|. ++-++
T Consensus 2 l~L~~V~~~y~~--~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH--LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCc--ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 568899999963 22 368899999999999999999999999999999999999999999999988875 46799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+++|+.-||. -||++||.+|....-+ .+.+++..++..+|+.++..+|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 9999999997 6999999999864322 35678999999999999999998 3699999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|.|+.|||+||||+||||+.-.......+.++. ++.|+++|||.++.+ +.+|+++++++|+|.++|.-+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888888887765 467999999999987 56999999999999999999999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=383.64 Aligned_cols=224 Identities=34% Similarity=0.511 Sum_probs=191.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCCC--ChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKEL--DPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~~--~~~ 472 (644)
|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999964 36899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+++. .........|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77889999999999999999999997532100 012345666777777764442 1234556789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999875 59999999999999999999997
Q ss_pred cCCCcH
Q psy5743 628 KNPNSM 633 (644)
Q Consensus 628 ~~~~~~ 633 (644)
.++...
T Consensus 232 ~~~~~~ 237 (247)
T TIGR00972 232 TNPKEK 237 (247)
T ss_pred hCCCCh
Confidence 653333
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=394.13 Aligned_cols=220 Identities=33% Similarity=0.566 Sum_probs=195.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+-+|. +..+++|+||+|++||++++.||||||||||+++|+||.+|++|+|.+||+|+..+.+. ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 46799999999999999999999999999999999999999999999999999998875 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|+|+--||. -||+|||.||-.-.....+ +++.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 7999999999762111222 37888999999888766665 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch-HHhhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~-~i~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||..+|++|+||||.||||.+-....+..++++.+ +.|.|+|||+-+ .+..+|||.||++|+|.+.||++|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999988888888776543 889999999966 46889999999999999999999999876
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5544
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=383.45 Aligned_cols=226 Identities=33% Similarity=0.485 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++|||.++....... .++++.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 67888999999999999999999999864211001 134556666666654332 334444 4678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||..+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987789999999999987 45999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 86543333
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=384.12 Aligned_cols=221 Identities=32% Similarity=0.525 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 469999999999999999999999999999999999975 689999999999875 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999998632100 012345666777777655443 234566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987789999999999988 45999999999999999999999
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=363.34 Aligned_cols=229 Identities=33% Similarity=0.454 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhc
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~ 476 (644)
-++++|+++.|+... ..++++||||+|.+||+++|||+||||||||+++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997521 115999999999999999999999999999999999999999999999998776543 446788
Q ss_pred ceEEEecCCC-CCc--ccHHHHHhcCCC-CCCCCCHHHHHHHHHHHhhccch-hhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPT-LFS--GTIYENILYGVN-DSSSVTKSDIIHAAKEANAYGFV-IDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~-Lf~--gTIreNI~~g~~-~~~~~~~~~i~~a~~~a~l~~~i-~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.+-+|+|||+ =+| -||++-|.=.-. ...+-..++++++++.+++.+.. .+.| ..|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999998 222 456655542110 00113456688899999986533 3344 579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc--eEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK--TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~--TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||.-+|++||||||||+||......|.+.+.++.+++ |.|+|||+++.+. .||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998887655 9999999999985 599999999999999999999987
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 6455665543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=381.89 Aligned_cols=220 Identities=30% Similarity=0.511 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 469999999999999999999999999999999999999999999999999998887665 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCC---------CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSV---------TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~---------~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+||+|++.+|.+ |++|||.++....... +.++..+ .+++.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 9999999874321000 1111111 112233332 4555556667789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998875 57899999999999855 999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
..+
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=399.50 Aligned_cols=210 Identities=35% Similarity=0.492 Sum_probs=182.4
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hcceEEEecCCCCCc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RSQIGSVSQEPTLFS 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~ 489 (644)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.|+..+++.++ |+.++||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3568999999999999999999999999999999999999999999999999999999888 789999999999997
Q ss_pred -ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy5743 490 -GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564 (644)
Q Consensus 490 -gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Ili 564 (644)
.|++|||.++.+.. ..+ ++++.++++.+++.++. .....+||||||||++|||||+++|+|||
T Consensus 85 ~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 85 HMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 59999999874321 122 34556666766665443 44455899999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
||||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|+++++...|.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999999999998874 379999999999975 66999999999999999999999876444443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=382.60 Aligned_cols=223 Identities=32% Similarity=0.511 Sum_probs=192.1
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--C
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--L 469 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~ 469 (644)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999996 589999999999863 4
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+...+|++++|++|++.+|..|++||+.++.......+ ++++.++++..++.+++. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999998632110122 245666777777654332 3455677899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877789999999999885 59999999999999999999
Q ss_pred HHhcC
Q psy5743 625 HLIKN 629 (644)
Q Consensus 625 eLl~~ 629 (644)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=399.10 Aligned_cols=219 Identities=36% Similarity=0.521 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.+
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 468999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++..+. ...||||||||++||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLA 148 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALA 148 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 99999999997 59999999974311 122 34566777777775544333 458999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++.+++
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988754 78999999999987 669999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 229 ~~~~ 232 (351)
T PRK11432 229 ASRF 232 (351)
T ss_pred CchH
Confidence 5444
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=377.30 Aligned_cols=206 Identities=32% Similarity=0.537 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 34699999999999999999999999999999999999999999999999999877644 4788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.++|++|++.+|. .|++||+.++.... ....++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 59999998752110 0012456677777777655443333 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
||||+++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 3789999999999986 5899999999985
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=380.01 Aligned_cols=214 Identities=30% Similarity=0.487 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876654 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCC---CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSS---VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|+|.+|. .|++||+.++...... .+ ++++.++++..++.+ ........||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 9999999996 6999999986421000 01 223444455555433 233445689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 68999999999986 4599999999999999999999976
Q ss_pred C
Q psy5743 629 N 629 (644)
Q Consensus 629 ~ 629 (644)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=387.73 Aligned_cols=214 Identities=30% Similarity=0.528 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+| .+|..|++||+.++... ...+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~l 149 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAI 149 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHH
Confidence 9999998 68899999999987321 1122 245666777777765544443 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998874 378999999999998 56999999999999999998765
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=380.93 Aligned_cols=215 Identities=36% Similarity=0.523 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr~ 476 (644)
|+++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 256999999999999999999999999999999999999999999999999998877 456788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC-----------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS-----------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.++||+|++.+|. .|++||+.++.... ....++++.++++..++ +.........|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 9999999999887 69999998753210 00122334444444443 3334556778999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|||||++||||++++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999987 79999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=370.09 Aligned_cols=200 Identities=36% Similarity=0.533 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|+++||+++|++..+ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999975211 3699999999999999999999999999999999999999999999999 7
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+|++|+|.+|++|++||+.++.. .++++..++++.+++.+++..+|.|++|.+.+.+..||||||||++||||++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP----FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC----cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999743 4566788888888999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
.+|+++||||||++||+++.+.+.+. +.+.. +++|+|+|||+++.+..||+|++|++|+
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999998888874 55543 4689999999999998999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=385.98 Aligned_cols=219 Identities=32% Similarity=0.518 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--hHHHh
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--PMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr 475 (644)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 247999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++|||+|+| .+|+.|++|||.++... ...+.+ ++.++++.+++. +.+........||||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHH-CCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 9999999998 68899999999986321 113443 344555555543 1133445567899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999987 56999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
.+
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 65
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=375.53 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+++|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|++.+| +.|++||+.++.... ..+ ++++.++++..++.+. +++ ....||||||||++|||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDK-------ANK----RARTLSGGMKRKLSLAI 146 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHH-------HhC----hhhhCCHHHHHHHHHHH
Confidence 999999999 579999998753110 012 2334455555554322 233 34579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999877899999999999985 5999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=386.69 Aligned_cols=218 Identities=34% Similarity=0.543 Sum_probs=191.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.+
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 3899999999964 235699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+|++|++ .+++.|++|||.++.... ..+ ++++.++++..++.+++...| ..||||||||++|
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 9999998 577889999999863221 122 244666777777766555444 4899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999998764 7899999999999999999999999999999999988753
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=381.12 Aligned_cols=228 Identities=32% Similarity=0.486 Sum_probs=191.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCC--CCCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIK--ELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~--~~~~ 471 (644)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 46999999999999999999999999999999999999874 999999999997 4566
Q ss_pred HHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
..+|++++|++|++.+|.+ |++||+.++..... ...++++.++++..++.+++.. ........||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788899999999999976 99999987531100 0112345666666666544322 234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877799999999999875 59999999999999999999
Q ss_pred HHhcCCCcHHHH
Q psy5743 625 HLIKNPNSMFNK 636 (644)
Q Consensus 625 eLl~~~~~~y~~ 636 (644)
++.+.+...+.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998653323433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=386.46 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----CChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 473 (644)
|+++||+|+|++.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997422 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|+| .+|+.|+.||+.|+.... ..+.++ +.++++..++.+ .........||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHH
Confidence 899999999998 799999999999874321 123333 344444445421 122355678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998875 478999999999987 5699999999999999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+.+
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=374.10 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=181.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 469999999999999999999999999999999999999999999999999988887664 6779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCC-CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSS-VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~-~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++.+|.+ |++||+.++.+.... ...+++.++++.. . +++.........||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999987 999999987542100 0111222222222 1 123334455678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++++|||||++||+++...+.+.|+++. .++|+|++||+++.+ ..||+|++|++|++++.|+.+++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999998875 478999999999986 5599999999999999999988753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=396.00 Aligned_cols=219 Identities=31% Similarity=0.484 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+..+. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999887664 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++.. .....||||||||++||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 99999999996 69999999974321 122 345566666666655443 44468999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++++||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.+++
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988754 78999999999986 669999999999999999999999865
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 5444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=379.46 Aligned_cols=215 Identities=33% Similarity=0.494 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 3569999999999999999999999999999999999999999999999999987764 34688
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC-----------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS-----------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.++||+|++.+|. .|++||+.++.... ....++++.++++..++ +.........|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----------ADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 9999999999887 69999998764210 00112334444444444 3333456678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
|||||++||||++++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988753 78999999999998 469999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=382.06 Aligned_cols=223 Identities=33% Similarity=0.496 Sum_probs=191.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--C
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--L 469 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~ 469 (644)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+...+|+.++||+|++.+|++|++||+.++.... ....++++.++++..++.+++. .........|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 5667889999999999999999999999753100 0011345566777777654432 234566778999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecCh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999987788999999999998 55899999999999999999
Q ss_pred hHHhcC
Q psy5743 624 AHLIKN 629 (644)
Q Consensus 624 ~eLl~~ 629 (644)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=378.34 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++... ...+ ++++.++++..++.+ +........+||||||||++|||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHH
Confidence 9999999996 6999999876321 0112 233444455544432 01334556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|+++||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998753 78999999999976 56999999999999999999998764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=383.92 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++ .+++.|+.|||.++... ...++++ +.++++.+++.++.. .....||||||||++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 151 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAV 151 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHH
Confidence 9999998 47789999999976321 1123333 455566666544322 2346899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988754 7899999999999999999999999999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=385.10 Aligned_cols=222 Identities=33% Similarity=0.495 Sum_probs=185.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hc
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RS 476 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~ 476 (644)
.++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 468999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++|++|++.+|. .|++||+.++.... ....++++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999995 69999998753210 0012345666677776655444333 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++++|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++|+++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 78999999999987 56999999999999999999999865
Q ss_pred CCcHHHH
Q psy5743 630 PNSMFNK 636 (644)
Q Consensus 630 ~~~~y~~ 636 (644)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 4444543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=377.04 Aligned_cols=218 Identities=32% Similarity=0.509 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+... ++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997421 127999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|. .|++||+.++.... ..+ .+++.++++..++.+. .......||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRV 149 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHH
Confidence 88999999999997 69999998753210 112 2344555555554433 3334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 789999999999985 59999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 230 ~~ 231 (233)
T cd03258 230 AN 231 (233)
T ss_pred cC
Confidence 53
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=378.31 Aligned_cols=227 Identities=32% Similarity=0.485 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~~ 473 (644)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4699999999999999999999999999999999999984 6999999999999888888
Q ss_pred HhcceEEEecCCCCC-cccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEPTLF-SGTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|++.+| +.|++||+.++..... ...++++.++++..++.+.+.. .+ .....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL----DAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCCcccCCHHHH
Confidence 999999999999755 6799999987632100 0113456777777777554321 22 334568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++++|||||++||+.+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 99999999999999999999999999999999999999987789999999999987 46999999999999999999999
Q ss_pred hcCCCcHHH
Q psy5743 627 IKNPNSMFN 635 (644)
Q Consensus 627 l~~~~~~y~ 635 (644)
.+.+...+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14247 233 FTNPRHELT 241 (250)
T ss_pred HcCCccHHH
Confidence 865433343
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=384.28 Aligned_cols=222 Identities=28% Similarity=0.526 Sum_probs=186.8
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 473 (644)
|+++||+|+|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 24699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRI 550 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRi 550 (644)
+|+.||||+|+| .+|+.|++|||.++... ...+.++..+.++ +.++. .|+++ .......+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~-----~~l~~--~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN-FKMNLDEVKNYAH-----RLLMD--LGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH-cCCCHHHHHHHHH-----HHHHH--cCCChhhhhCCcccCCHHHHHHH
Confidence 899999999997 68999999999987321 1134444332211 12222 25654 34567889999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 379999999999987 569999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 64
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=378.64 Aligned_cols=226 Identities=30% Similarity=0.459 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999997 3 59999999999864 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|.+|++||+.++.......++ +++.++++..++.+++. .........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999886321110122 23445566666554432 234556778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||.++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999975 5999999999999999999998
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+++...|
T Consensus 242 ~~~~~~~~ 249 (259)
T PRK14274 242 FSNPDDQR 249 (259)
T ss_pred hhCCCCHH
Confidence 76533333
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=394.37 Aligned_cols=219 Identities=32% Similarity=0.489 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...++ .++.++
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCC---CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDS---SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|++.+|. .|++|||.|+.... ...+ ++++.++++..++.++..+ ....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 9999999997 59999999874310 0122 3456666777776554433 33689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988764 68999999999986 5599999999999999999999987
Q ss_pred CCCcHH
Q psy5743 629 NPNSMF 634 (644)
Q Consensus 629 ~~~~~y 634 (644)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 654434
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=369.10 Aligned_cols=201 Identities=36% Similarity=0.564 Sum_probs=175.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 569999999999999999999999999999999999999999999999998864 457788999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 481 VSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 481 V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
++|++ .+|+.|++||+.++.+.. ...++++.++++..++.++..+.| ..||||||||++||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKEL-DAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhc-CccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHh
Confidence 99998 478899999999875421 123467788888888776654444 4799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
+|+++||||||++||+++.+.+.+.|++. .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999887 35789999999999986 59999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=357.40 Aligned_cols=226 Identities=34% Similarity=0.510 Sum_probs=195.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr 475 (644)
.|+++||+-.||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|+++|.++..+. ...||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 568999999999999999999999999999999999999999999999999999888 66778
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
++||+++|++-|-. -|+.+|+..|+-... +.+.....+|++.+|+.+.. -.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 89999999999887 589999998874421 22444556677777765542 35678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~ 620 (644)
|||+||++|||||.++|+|++=|||+|+||+.+.+.|++.|++.. .+.|+|+.-|.+++. +.||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998864 478999999999997 56999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHh
Q psy5743 621 GSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+.+||- +....+.+.+
T Consensus 230 g~~~el~---~~~~~~iYg~ 246 (258)
T COG3638 230 GPASELT---DEALDEIYGN 246 (258)
T ss_pred CChhhhh---HHHHHHHhcc
Confidence 9999963 2455555543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=385.82 Aligned_cols=219 Identities=30% Similarity=0.440 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----CChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 473 (644)
|+++|++|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|+| .+|+.|++|||.++... ...+.+ ++.++++..++.+. ........||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 888999999998 68999999999987432 112333 33444555554321 12344568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||+|++|++|++++.|+.+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988753 78999999999987 569999999999999999999
Q ss_pred HHhcC
Q psy5743 625 HLIKN 629 (644)
Q Consensus 625 eLl~~ 629 (644)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=372.69 Aligned_cols=205 Identities=35% Similarity=0.575 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|++.+|. .|++||+.++.... ..+ ++++.++++..++.++ ......+||||||||++|||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 143 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALAR 143 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHH
Confidence 9999999886 69999998763211 012 2344555555555433 33334689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
||+++|+++||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|
T Consensus 144 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 78999999999987 459999999999998876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=381.73 Aligned_cols=218 Identities=31% Similarity=0.562 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4899999999974 245799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++ .+++.|++|||.++... ...+.++ +.++++..++.++ ......+||||||||++|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 9999998 46678999999986321 1123333 4445555555433 334457999999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998753 4899999999999989999999999999999999988754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=375.18 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+ +..|++||+.++... ...+.++..+ .+.++++.+ |++.........||||||||++||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAAL-HGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHh-cCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999987 568999999876321 1122222211 111222222 45555566677999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999875 37899999999999988999999999999999999998864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=393.95 Aligned_cols=219 Identities=30% Similarity=0.527 Sum_probs=191.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999963 4689999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999965 9999999974311 122 345667778878777666655 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|++++++..+
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988764 78999999999985 569999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4444
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=377.62 Aligned_cols=227 Identities=31% Similarity=0.494 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++.+.... ..++++.++++..++++.. + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 6678899999999999999999999976321100 1123455566666654321 1 123456679999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998754 999999999999999999999
Q ss_pred hcCCCcHHH
Q psy5743 627 IKNPNSMFN 635 (644)
Q Consensus 627 l~~~~~~y~ 635 (644)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 765433343
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=393.30 Aligned_cols=220 Identities=29% Similarity=0.469 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC--cEEEECCccCCCCChHHHh
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--GKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~--G~I~idg~~i~~~~~~~lr 475 (644)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++...++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999963 469999999999999999999999999999999999999999 999999999987665 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.|+||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 789999999999965 9999999874311 122 245666777777766655544 48999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+|||||.++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988754 68999999999986 56999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+.+...|
T Consensus 227 ~~~p~~~~ 234 (362)
T TIGR03258 227 YDAPADGF 234 (362)
T ss_pred HhCcCcHH
Confidence 87654444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=371.83 Aligned_cols=206 Identities=33% Similarity=0.449 Sum_probs=174.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH----H
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY----L 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~----l 474 (644)
|+++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 157999999999999999999999999999999999999999999999999998877533 4
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++++||+|++.+|.+ |++||+.++.... ..+ ++++.++++..++. ........+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGGQQQR 148 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHHHHHH
Confidence 5789999999999986 9999999864321 111 23444555555443 33344556899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999998764 7899999999999999999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=372.90 Aligned_cols=213 Identities=29% Similarity=0.437 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
-++++||+|+|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 247999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHhcCCC--CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 R-SQIGSVSQEPTLFSG-TIYENILYGVN--DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r-~~i~~V~Q~~~Lf~g-TIreNI~~g~~--~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
| +.++|++|++.+|.+ |++||+.++.. .. ....++++.++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 3 679999999999975 99999987421 00 001123445555555443 33444557899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++||||++.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999998775
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=378.46 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=191.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 35999999999953 579999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++||+|++.+|.+|++|||.++....... .++++.++++..++.+++. +........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 567788999999999999999999999863211111 2344566677777655442 34567778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|+++||||||++||..+...+.+.|.++.++.|+|+|||+++.+ ..||+|++|++|++++.|+.++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999987789999999999987 5599999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=377.38 Aligned_cols=224 Identities=33% Similarity=0.499 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCC--h
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELD--P 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~--~ 471 (644)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999985 7999999999986533 4
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++.... ..+. +++.++++..++.+++ ..........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 56788999999999999999999999863210 1222 3455566666654332 1223445678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++|||||+.+|+++||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999999
Q ss_pred hcCCCcH
Q psy5743 627 IKNPNSM 633 (644)
Q Consensus 627 l~~~~~~ 633 (644)
.+++...
T Consensus 241 ~~~~~~~ 247 (258)
T PRK14268 241 FHNPREK 247 (258)
T ss_pred hcCCCCH
Confidence 7653333
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=395.49 Aligned_cols=224 Identities=25% Similarity=0.464 Sum_probs=197.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|||+|++.+ |+.|++||+.++.... ...+++++.++++..++.++..+ ....||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 6889999999875211 11235567888888887665432 3458999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+++|++|||||||++||..+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 478999999999999 5699999999999999999999885
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 3 3455554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=378.31 Aligned_cols=225 Identities=31% Similarity=0.512 Sum_probs=189.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCCC--hH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKELD--PM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~~--~~ 472 (644)
-+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 479999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++||+|++.+|.+|++||+.++..... ...++++.++++..++.+++ .+.+...+..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 57889999999999999999999987621100 01234455666766665432 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+.+...|
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87644433
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=375.83 Aligned_cols=222 Identities=32% Similarity=0.496 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc---CCC--CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL---YDP--QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~---~~p--~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++...... ..++++.++++..++.+++. +.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999876321100 12334566666666654443 334566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999987789999999999988 55999999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 8653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=395.03 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.+
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999963 468999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.++.... ..+ ++++.++++..++.++..+ ....||||||||++||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHH
Confidence 99999999996 49999999874311 122 2446666676666544333 3358999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++...+
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999976 569999999999999999999998754
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 226 ~~~~ 229 (369)
T PRK11000 226 ANRF 229 (369)
T ss_pred ccHH
Confidence 4333
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=388.62 Aligned_cols=228 Identities=27% Similarity=0.436 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCC----------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 399 EIDFNNIRFSYPSRP----------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
-|+++|++.+|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999999
Q ss_pred CChHH---HhcceEEEecCC--CCC-cccHHHHHhcCCCCC-CCCCHHH----HHHHHHHHhhccchhhhhcCccccccC
Q psy5743 469 LDPMY---LRSQIGSVSQEP--TLF-SGTIYENILYGVNDS-SSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGE 537 (644)
Q Consensus 469 ~~~~~---lr~~i~~V~Q~~--~Lf-~gTIreNI~~g~~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige 537 (644)
++..+ +|++++||+|+| .++ ..||.|||.++.... ...+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 88654 578899999998 477 589999997531100 0133333 344455554421 12234
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDK 614 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~ 614 (644)
....||||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999988754 7899999999999975 999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
|+|+|.|+.+++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765556655
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=375.25 Aligned_cols=226 Identities=33% Similarity=0.518 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 470 (644)
+.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++||+|++.+|+.|++||+.++...... ..++++.++++.+++.+.+. .........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 56788899999999999999999999986321100 12344555666666543332 23455677899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999875 599999999999999999999
Q ss_pred HhcCCCcH
Q psy5743 626 LIKNPNSM 633 (644)
Q Consensus 626 Ll~~~~~~ 633 (644)
+...+...
T Consensus 232 ~~~~~~~~ 239 (250)
T PRK14240 232 LFTNPKDK 239 (250)
T ss_pred HHhCCCCh
Confidence 87643333
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=379.35 Aligned_cols=227 Identities=24% Similarity=0.443 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 475 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++||+|++.+|.+ |++||+.++.......+. +++.++++..++.+ ........||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 789999999999986 999999875211001122 23344444444432 22334468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 6899999999998854 9999999999999999999998
Q ss_pred cCCCcHHHHHHH
Q psy5743 628 KNPNSMFNKLMK 639 (644)
Q Consensus 628 ~~~~~~y~~l~~ 639 (644)
+.+...+.+++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 653344555553
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=375.59 Aligned_cols=222 Identities=32% Similarity=0.489 Sum_probs=187.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CC---CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DP---QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p---~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999995 36 499999999998643 44
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++..... ...++++.++++..++.+++. +........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987532100 011234555566666544332 334566788999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999874 5999999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 8653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=376.42 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---------
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--------- 470 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------- 470 (644)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 471 ----PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 471 ----~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
...+|+.++||+|++.+|. .|++||+.++.......+ ++++.++++..++ +.........
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhcChhh
Confidence 2467889999999999885 799999998521100112 2334444444444 3334455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999984 69999999999999
Q ss_pred EecChhHHhcCC
Q psy5743 619 EIGSYAHLIKNP 630 (644)
Q Consensus 619 e~Gt~~eLl~~~ 630 (644)
+.|+++++.+.+
T Consensus 227 ~~g~~~~~~~~~ 238 (252)
T TIGR03005 227 EQGKPDEIFRQP 238 (252)
T ss_pred EeCCHHHHhcCC
Confidence 999999998653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=378.74 Aligned_cols=222 Identities=33% Similarity=0.498 Sum_probs=191.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 470 (644)
+.|+++|++|+|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 35999999999963 4699999999999999999999999999999999999984 89999999999875 34
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++|++|++.+|++|++||+.++...... ..++++.++++..++.+++. +..+..+..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 56788999999999999999999999876321100 11244666666666654433 34567788999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999875 699999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=380.53 Aligned_cols=217 Identities=27% Similarity=0.496 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++|++|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 356999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
.++||+|++ .+|+.|++||+.++.... ..+. +++.++++..++.+ .......+||||||||+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRV 150 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHH
Confidence 999999998 678999999999863210 1222 33455555555543 23455779999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988764 789999999999986 69999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 63
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=371.26 Aligned_cols=213 Identities=32% Similarity=0.498 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999973 46999999999999999999999999999999999999999999999999998887655 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHH-HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD-IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~-i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++.+|.+ |++||+.++..... .++++ ..++++..+ +++.........||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALP-RRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcC-cchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999998743211 11111 222222222 233334556678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
+++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|+|||+++.+.. ||+|+++++|++++.|+++++
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999988764 7899999999999875 999999999999999999997
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=367.26 Aligned_cols=205 Identities=31% Similarity=0.446 Sum_probs=177.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|.+ |++||+.+..... ..+ ++++.++++..++.++ +++. ...||||||||++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LS~G~~qrv~la~ 143 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDR-------AKKK----IGSLSGGMRRRVGIAQ 143 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHH-------HhCc----hhhCCHHHHHHHHHHH
Confidence 99999999986 9999998742100 011 3445666666665433 2333 3579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999999985 59999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=380.73 Aligned_cols=217 Identities=33% Similarity=0.558 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr 475 (644)
-|+++|++|+|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999742 3469999999999999999999999999999999999999998 8999999999888877888
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++++||+|++ .+++.|++|||.++.+. ...+.+ ++.++++..++.++... ...+||||||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~G~~qr 151 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDS-----------EPANLSGGQKQR 151 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHH
Confidence 9999999998 46789999999986432 113333 35566666666544333 336999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|||||+.+|+++||||||++||..+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999999999999886
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
+
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=367.17 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=188.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 475 (644)
+.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|
T Consensus 1 ~~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 1 VQVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred CeeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhc
Confidence 3578999999853 579999999999999999999999999999999999999999999999999877653 3456
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++....+||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~t~~~nl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 79 YSVAYAAQKPWLLNATVEENITFGSP----FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred ceEEEEcCCCccccccHHHHHhhcCc----CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 78999999999999999999998743 35667778888889888888899999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHH--HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQS--AIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~--~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
++++|+++||||||++||..+...+.+ .+..+. .++|+|++||+++.+..||+|++|++|.
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988887 344433 3689999999999999999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=365.46 Aligned_cols=205 Identities=29% Similarity=0.438 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4799999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+| +.|++||+.++... ...+++++.++++..++.+... .....||||||||++||||+++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARL-LGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHh-cCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhc
Confidence 999999888 57999999886421 1135677778888887755433 3346799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+|+++||||||++||+.+.+.+.+.|.+.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998865 4789999999999885 59999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=374.48 Aligned_cols=232 Identities=30% Similarity=0.450 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
...|+.++|++|++.+|++|++||+.++...... ..++++.++++..++.+. +.+.....+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999986321000 112344555555554332 23446777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|+++||||||++||.++.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999985 5999999999999999999999
Q ss_pred hcCCCcHHHHHHHh
Q psy5743 627 IKNPNSMFNKLMKY 640 (644)
Q Consensus 627 l~~~~~~y~~l~~~ 640 (644)
.+.+...+.+.+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (253)
T PRK14261 236 FENPHEELTENYIT 249 (253)
T ss_pred HhCCCcHHHHHHhc
Confidence 76544445555443
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=380.85 Aligned_cols=219 Identities=29% Similarity=0.525 Sum_probs=188.9
Q ss_pred cEEEEEEEEEcCCCC---CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHH
Q psy5743 399 EIDFNNIRFSYPSRP---DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~l 474 (644)
-|+++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 RSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 r~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.++||+|+| .+|..|+.||+.|+... ...+ ++++.++++..++.++..+. ...|||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~q 151 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQ 151 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHH
Confidence 88999999998 47777999999987321 0122 34566677777766554443 3689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|+++|||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998753 7899999999999988999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.++
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=372.76 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++.+.. ..+.++..+ .+.+.+..+ |++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~ 149 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIR-GLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALA 149 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhc-CCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999987 9999999864321 122222111 112223322 4555556667899999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.+|++|||||||++||.++.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998875 478999999999765 5599999999999999999999864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=372.46 Aligned_cols=226 Identities=31% Similarity=0.463 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--------h
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--------P 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------~ 471 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+|+.++||+|++.+|. .|++||+.++.......+.+ ++.++++.. |++.........|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV-----------GLAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCcchhhCChhhCChHH
Confidence 567889999999999886 69999998742100012222 233333333 33333445678999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988754 789999999999985 49999999999999999999
Q ss_pred HHhcCCC-cHHHHHHH
Q psy5743 625 HLIKNPN-SMFNKLMK 639 (644)
Q Consensus 625 eLl~~~~-~~y~~l~~ 639 (644)
++.+.+. ...+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 230 ALFADPQQPRTRQFLE 245 (250)
T ss_pred HHhcCCCCHHHHHHHH
Confidence 9876432 23344444
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=369.12 Aligned_cols=207 Identities=29% Similarity=0.467 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 246999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 -SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 -~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+.++||+|++.+|. .|++||+.++... ...+ ++++.++++..++ +.........||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr 149 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLI-GKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQR 149 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHH
Confidence 67999999999996 6999999874210 0012 2234444444443 333344457899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
++||||++++|++||||||||+||.++...+.+.|.++.+ ++|+|+|||+++.+..+|+|++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=379.57 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=187.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999964 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
||+|++ .+|+.|++||+.++... ...+. +++.++++..++.++..+ ....||||||||++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHH
Confidence 999998 47889999999875321 01233 345566666666544333 3358999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988754 78999999999998 57999999999999999999999754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=375.97 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999875 799999999999865 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|++|++||+.++..... ...++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999997632100 011234555666665543222 234566779999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999774 6999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=369.46 Aligned_cols=209 Identities=27% Similarity=0.449 Sum_probs=177.0
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++||+++|++... +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 269999999999999999999999999999999999999999999999999975 456788899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+|++|++.+|.+ |++||+.+..... ..+ ++++.++++..++ +.........||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHH
Confidence 999999999985 9999998753210 112 2344445555544 3334456678999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
||++++|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999998874 4789999999999875 59999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=375.71 Aligned_cols=221 Identities=28% Similarity=0.466 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
-++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999963 469999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH-----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK-----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~-----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+++.++|++|++.+|..|++||+.++.... ..++ +++.++++..++.+ ++.......+..|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH-GIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHH
Confidence 67788999999999999999999999763210 1222 12233333333322 23334566778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999975 599999999999999999999
Q ss_pred HhcCC
Q psy5743 626 LIKNP 630 (644)
Q Consensus 626 Ll~~~ 630 (644)
+..++
T Consensus 253 ~~~~~ 257 (271)
T PRK14238 253 IFSNP 257 (271)
T ss_pred HHcCC
Confidence 97653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=372.80 Aligned_cols=230 Identities=30% Similarity=0.488 Sum_probs=193.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 4699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++...... ..++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 5678899999999999999999999976321000 12334566677777654432 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||..+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999987789999999999976 56999999999999999999999
Q ss_pred hcCCCcHHHHHH
Q psy5743 627 IKNPNSMFNKLM 638 (644)
Q Consensus 627 l~~~~~~y~~l~ 638 (644)
.+.+...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 865333354443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=374.62 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=185.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC--------
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL-------- 469 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~-------- 469 (644)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 470 -----DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 470 -----~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
....+|+.++||+|++.+|.. |++||+.++.......+ ++++.++++..++.++. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 135678899999999999974 99999987421000012 23445555555543322 14556
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999998875 47999999999999975 999999999999
Q ss_pred EEecChhHHhcC
Q psy5743 618 VEIGSYAHLIKN 629 (644)
Q Consensus 618 ve~Gt~~eLl~~ 629 (644)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=378.35 Aligned_cols=216 Identities=33% Similarity=0.540 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i 478 (644)
|+++|++++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 346999999999999999999999999999999999999999999999999998776 36778899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEPT--LFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+|. +++.|++|||.++... ...+. +++.++++..++. .........||||||||++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPEN-LCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHHHHHHH
Confidence 99999985 6788999999987421 01232 3344444444443 33344557899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999999999999999999999999998653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=375.82 Aligned_cols=223 Identities=30% Similarity=0.520 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999997 689999999999863 56
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+..+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+.+ +.........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 7788899999999999999999999998743210 01134556666666654322 23345566789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeC-----------Ce
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDK-----------GK 616 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~-----------G~ 616 (644)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887789999999999987 56999999996 67
Q ss_pred EEEecChhHHhcCC
Q psy5743 617 IVEIGSYAHLIKNP 630 (644)
Q Consensus 617 ive~Gt~~eLl~~~ 630 (644)
+++.|+.+++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998643
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=377.54 Aligned_cols=218 Identities=30% Similarity=0.495 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999752 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEPT--LFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++. ++..|+++|+.++.... ..+ ++++.++++..++.++. .....+||||||||++|
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAI 153 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHH
Confidence 99999984 55678999998874321 122 23455556666554332 23456899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988753 6899999999999988999999999999999999998764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=376.71 Aligned_cols=221 Identities=28% Similarity=0.466 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCC-hH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELD-PM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~-~~ 472 (644)
-++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 4899999999963 4799999999999999999999999999999999999986 6999999999998764 45
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++||+|++.+|+.|++||+.++.......++++.. +.++..++.+ .+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 7788999999999999999999999863211112444433 2333333322 2234456778899999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|++|||||||++||..+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999998
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 65
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=374.76 Aligned_cols=228 Identities=32% Similarity=0.428 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
|+++||+|+|++. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998877644
Q ss_pred ---HhcceEEEecCCC--CC-cccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 474 ---LRSQIGSVSQEPT--LF-SGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 474 ---lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|+.++||+|++. ++ ..|++|||.++..... ...++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4799999975421100 012334455555554421 12345667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||||||++||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998754 789999999999996 5999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+++++....+..+..+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987433344434
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=372.00 Aligned_cols=216 Identities=30% Similarity=0.439 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC------CCChHH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK------ELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~------~~~~~~ 473 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999873 223467
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+|++++|++|++.+|.+ |++|||.++.......+. +++.++++..+ ++..+......|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLR-----------LKPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHH
Confidence 78899999999999975 999999753110000122 22333344433 444444455789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998875 3799999999999985 4999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=369.45 Aligned_cols=209 Identities=30% Similarity=0.453 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997411 1579999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++.+|. .|++||+.++..... ...++++.++++..++.++.. .....||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999998 699999987632100 012344555666666544333 333589999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEe--CCeEEEecChh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLD--KGKIVEIGSYA 624 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~--~G~ive~Gt~~ 624 (644)
|++++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ ..||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998874 378999999999976 5699999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=355.24 Aligned_cols=178 Identities=40% Similarity=0.663 Sum_probs=167.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999752 34699999999999999999999999999999999999999999999999988776 677889999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+ ...||||||||++||||++++
T Consensus 79 ~~~q~~~~~~~tv~~~i------------------------------------------~~~LS~G~~qrv~laral~~~ 116 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL------------------------------------------GRRFSGGERQRLALARILLQD 116 (178)
T ss_pred EEccCCeeecccHHHhh------------------------------------------cccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 568999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|++|||||||++||.++.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 117 p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 117 APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999887789999999999999999999999999998765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=380.78 Aligned_cols=219 Identities=27% Similarity=0.402 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC---------
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--------- 468 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--------- 468 (644)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhh
Q psy5743 469 ---------------LDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 469 ---------------~~~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~l 527 (644)
.+...+|+.||||+|+| .+|..|++|||.|+... ...+.+ ++.++++..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 23567889999999986 78999999999987421 113333 3444555555431
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hh
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RK 605 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~ 605 (644)
.........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 12345567899999999999999999999999999999999999999999998874 478999999999976 66
Q ss_pred cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 606 SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||+|++|++|++++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=371.54 Aligned_cols=223 Identities=31% Similarity=0.527 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCCC--C
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKEL--D 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~~--~ 470 (644)
+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999986 4 689999999998754 4
Q ss_pred hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 471 PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
...+|+.++||+|++.+|. .|++||+.++.......+ ++++.++++..++.+++.. ........||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5567889999999999998 599999987531100011 2345666667776554432 233567789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|+++|||||||+||..+.+.+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987789999999999998 569999999999999999999
Q ss_pred HHhcCC
Q psy5743 625 HLIKNP 630 (644)
Q Consensus 625 eLl~~~ 630 (644)
++...+
T Consensus 233 ~~~~~~ 238 (252)
T PRK14256 233 KIFTTP 238 (252)
T ss_pred HHHhCC
Confidence 997653
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=366.96 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998875 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.. |++||+.++..... ...++++.++++..++.++.. +. ...||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-------RL----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-------CC----hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999987421100 012345666677766654332 22 35799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++.+|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 689999999999886 5999999999999999998774
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=371.52 Aligned_cols=221 Identities=29% Similarity=0.502 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++........ ++++.++++..++.+++ .......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 678899999999999999999999998632100011 23344455555554433 2345677889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999865 799999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=384.54 Aligned_cols=230 Identities=22% Similarity=0.366 Sum_probs=188.0
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHH
Q psy5743 400 IDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 474 (644)
|+++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975321 369999999999999999999999999999999999998 489999999999999988776
Q ss_pred hc----ceEEEecCCC--CCc-ccHH----HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 475 RS----QIGSVSQEPT--LFS-GTIY----ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 475 r~----~i~~V~Q~~~--Lf~-gTIr----eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
++ .|+||+|+|. ++. -|+. +|+...........++++.++++..++.+.. .........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 332 2454 4444321100012345667777777775421 12345667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~ 620 (644)
||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+ +.||+|++|.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 78999999999998 56999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+.+++++++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997655566543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=340.56 Aligned_cols=210 Identities=32% Similarity=0.503 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+|+||+.+|++. +++|+||||+|++||++-++||||||||||+|+|++...|++|+|.++|+|+..+... -+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999863 6799999999999999999999999999999999999999999999999999888765 5799
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+||-.|.. -|+.||++|.-.-. +..-.+++.++++.+|+.+-...+| ..|||||+||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999999775 69999999854210 1123567888999999999888888 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc-CEEEEEeCCeEEEecC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGS 622 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a-D~Iivl~~G~ive~Gt 622 (644)
|||+..+|++||=||||-+||+++...|++.+.++- .|.||++.||+.+.+..+ -+++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999988863 488999999999999765 6789999999986543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=376.76 Aligned_cols=224 Identities=27% Similarity=0.418 Sum_probs=190.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+||+|++.++.+ |++||+.++.... ....++++.++++..++.+++... ...||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877664 9999999863210 011244566677777765443332 247999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++.+|++|||||||++||..+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999984 69999999999999999999986
Q ss_pred cCCCcHHHHHH
Q psy5743 628 KNPNSMFNKLM 638 (644)
Q Consensus 628 ~~~~~~y~~l~ 638 (644)
+. ..+.+++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 42 3444444
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=377.18 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 473 (644)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHH----HHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i----~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.|+|++|++ .+|+.|++|||.++... ...+.++. .++++..++.+ .........||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN-FGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 888999999998 68899999999876321 11233333 23333333321 123455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||++++|++||||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999988753 789999999999885 599999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 8753
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=369.88 Aligned_cols=215 Identities=27% Similarity=0.465 Sum_probs=184.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999988876654 4579
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|++|++.+|.+ |++||+.++..... ..+++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999987 99999998642100 00122333344433 33334455667899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|++|+||||||+||+++...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999986 599999999999999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=368.45 Aligned_cols=216 Identities=34% Similarity=0.528 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC--ChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL--DPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~--~~~~lr~~ 477 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998864 34577889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++|++|++.+|. .|++||+.++.......+.+ ++.++++.. |++.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV-----------GLAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CChHHHhcChhhcCHHHHHHHHH
Confidence 999999999886 69999998763110012222 233333333 44444445567899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++++|++++|||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4799999999999985 5999999999999999999998764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=371.27 Aligned_cols=221 Identities=31% Similarity=0.484 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCC-CCChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIK-ELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~-~~~~~ 472 (644)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++|++|++.+|..|++||+.++.......+ ++++.++++..++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999998632110011 234455566666554332 3345566789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999765 9999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=366.04 Aligned_cols=203 Identities=36% Similarity=0.607 Sum_probs=173.0
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 481 VSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 481 V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
++|++ .+++.|++||+.++.... ..+ ++++.++++..++.++ +......||||||||++|||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHH
Confidence 99998 467899999998863210 122 2234445555544333 33445789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|++++|+++|||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999988754 7899999999999977 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=390.55 Aligned_cols=219 Identities=31% Similarity=0.528 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++.+ .++.+
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 4999999999963 468999999999999999999999999999999999999999999999999987664 57899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 9999999874321 122 234556666666654443333 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999888877643 68999999999985 669999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 5444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=365.98 Aligned_cols=205 Identities=30% Similarity=0.562 Sum_probs=173.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999999776543 56899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++.... ..+. +++.++++..++.++ .......||||||||++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHH
Confidence 9999999985 69999998863210 1222 234444555554333 33444689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 7899999999998765 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=366.08 Aligned_cols=204 Identities=33% Similarity=0.533 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 35799999999999999999999999999999999999999999999999999887643 4678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.++|++|++.+|. .|++||+.++.... ....++++.++++..++.++..+.| ..||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 69999998852210 0112456677777777655443333 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|||++++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 47999999999999875 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=373.51 Aligned_cols=224 Identities=29% Similarity=0.460 Sum_probs=190.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.++ .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999999876 9999999863210 01123345556666655432 23345789999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998865 4789999999999875 699999999999999999999864
Q ss_pred CCcHHHHHHH
Q psy5743 630 PNSMFNKLMK 639 (644)
Q Consensus 630 ~~~~y~~l~~ 639 (644)
...+.+.+.
T Consensus 228 -~~~~~~~~~ 236 (255)
T PRK11231 228 -PGLLRTVFD 236 (255)
T ss_pred -HHHHHHHhC
Confidence 244555553
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=391.00 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=178.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hcceEEEecCCCCCc-c
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~-g 490 (644)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998887654 458999999999997 5
Q ss_pred cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 491 TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 491 TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
|++|||.++..... ...++++.++++..++.++..+.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632100 012345667777777766554444 4899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 568 ATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+ +.||+|++|++|++++.|++++++.++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998874 378999999999987 5699999999999999999999987543334
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=375.06 Aligned_cols=222 Identities=31% Similarity=0.532 Sum_probs=189.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 469999999999999999999999999999999999997 689999999999864 35
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
...+|+.++||+|++.+|..|++||+.++.... ....++++.++++..++.+.+.. ........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 567888999999999999999999998753210 00124566777777776544432 235567799999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEE-EEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQIC-VLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Ii-vl~~G~ive~Gt~~eL 626 (644)
|++|||||+++|+|||||||||+||..+.+.+.+.|+++.+++|+|+|||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=366.74 Aligned_cols=215 Identities=36% Similarity=0.519 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr 475 (644)
|+++||+++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1369999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cceEEEecCC--CCC-cccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEP--TLF-SGTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf-~gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++ .++ ..|++||+.++..... ...+++..+++ .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 5799999986422100 01112212111 1112222 332 345566788999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 789999999999987 69999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=375.93 Aligned_cols=228 Identities=31% Similarity=0.463 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 369999999999999999999999999999999999864 4999999999998653 33
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|.+|++|||.++.......+ ++++.++++..++.+.+.. ........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHHH
Confidence 467889999999999999999999998632100001 2345566666665433321 23456678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999985 5999999999999999999999
Q ss_pred hcCCCcHHHH
Q psy5743 627 IKNPNSMFNK 636 (644)
Q Consensus 627 l~~~~~~y~~ 636 (644)
.+.+...+.+
T Consensus 269 ~~~~~~~~~~ 278 (286)
T PRK14275 269 FTNPKDRMTE 278 (286)
T ss_pred HhCCCcHHHH
Confidence 8653333433
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=370.84 Aligned_cols=221 Identities=30% Similarity=0.474 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999999985 799999999999653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++.......+ ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999997632111011 2345566777766443322 23456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+|+|||||||+||..+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 4999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=369.87 Aligned_cols=225 Identities=29% Similarity=0.521 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~~ 472 (644)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 789999999963 46999999999999999999999999999999999999875 8999999999875 3455
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA----AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++|++|++.+|.+ |++||+.++........+++..+. ++..++.+. ++..+++ ...+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHHH
Confidence 778899999999999984 999999875421111123333332 233333222 2333343 4568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
++.+...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87544444
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=364.90 Aligned_cols=204 Identities=30% Similarity=0.532 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 469999999999999999999999999999999999999999999999999988764 34788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++||+|++.+|. .|++||+.++.... ..+ ++++.++++..++.+... ....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 146 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVA 146 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHH
Confidence 9999999999998 49999999863210 112 234555566555543322 233589999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
||||++++|+++|||||||+||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998874 47999999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=383.07 Aligned_cols=231 Identities=24% Similarity=0.400 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~l 474 (644)
-++++|++++|+.. ....+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999632 2346999999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----cceEEEecCCC--CCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 475 R----SQIGSVSQEPT--LFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 475 r----~~i~~V~Q~~~--Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+ +.|+||+|+|. ++. -|+.+|+..........+.+ ++.+.++.++ ||++++ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChHH-HhcCCcccCC
Confidence 4 47999999983 443 47777765321000012333 2333444433 343332 3567788999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 6999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+.+++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998655566653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=372.03 Aligned_cols=222 Identities=30% Similarity=0.510 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCC--CCCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIK--ELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~--~~~~ 471 (644)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 469999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++||+|++.+|+.|++||+.++..... ...++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 778889999999999999999999998643100 0123445556677766544432 2456677899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe---------CCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD---------KGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~---------~G~ive 619 (644)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999987778999999999986 5689999998 899999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|+++|+.+.+
T Consensus 240 ~~~~~~~~~~~ 250 (264)
T PRK14243 240 FDRTEKIFNSP 250 (264)
T ss_pred eCCHHHHHhCC
Confidence 99999998653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=382.08 Aligned_cols=229 Identities=29% Similarity=0.445 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCC-------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 399 EIDFNNIRFSYPSRP-------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
-|+++|++++|+... ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999997321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHhcCC---CC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 472 M---YLRSQIGSVSQEPT--LFS-GTIYENILYGV---ND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 472 ~---~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~---~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
. .+|++|+||+|+|. |+. -|+.+|+.... .. ......+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56789999999994 554 48999886321 00 00012345666677776632 233433 467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+ +.|+|+|||+++.+. .||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 789999999999996 59999999999999
Q ss_pred EecChhHHhcCCCcHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l 637 (644)
|.|+.+++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999997655556543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=371.64 Aligned_cols=222 Identities=34% Similarity=0.491 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999963 4699999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+++.++||+|++.+|+.|++||+.++..... ..+ ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987532100 011 2345667777777655432 23456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe-----CCeEEEec
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD-----KGKIVEIG 621 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~-----~G~ive~G 621 (644)
||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999999877899999999999985 599999998 59999999
Q ss_pred ChhHHhcCC
Q psy5743 622 SYAHLIKNP 630 (644)
Q Consensus 622 t~~eLl~~~ 630 (644)
+++++.+.+
T Consensus 237 ~~~~~~~~~ 245 (259)
T PRK14260 237 VTTQIFSNP 245 (259)
T ss_pred CHHHHhcCC
Confidence 999997643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=366.24 Aligned_cols=213 Identities=31% Similarity=0.500 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+++..+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|+.|++||+.++..-. ...+++++.++++..++. ++........||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998742100 011233344444444432 13345667789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEe-CCeEEEecChh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLD-KGKIVEIGSYA 624 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~-~G~ive~Gt~~ 624 (644)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999999999999995 66778899995
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=372.11 Aligned_cols=223 Identities=30% Similarity=0.495 Sum_probs=191.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCC----
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIK---- 467 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~---- 467 (644)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 4699999999999999999999999999999999999975 7999999998875
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..+...+|+.++|++|++.+|.+|++|||.++.... ....++++.++++.+++.+. +.+........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 334567888999999999999999999998763110 01124566667777665433 2344566678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||||++||||++++|+++||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999999877789999999999985 699999999999999999
Q ss_pred hhHHhcC
Q psy5743 623 YAHLIKN 629 (644)
Q Consensus 623 ~~eLl~~ 629 (644)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=366.93 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 477 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887654 5778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|++.+|.+ |++||+.++... .+.++..+.++ +.+..++...++ .......||||||||++||||+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHH
Confidence 9999999999985 999999986432 12222222111 111222211111 2335678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|+|+||||||++||+++.+.+.+.|.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 479999999999865 6799999999999999999999975
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=377.22 Aligned_cols=221 Identities=30% Similarity=0.482 Sum_probs=183.0
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----C-C
Q psy5743 398 GEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----L-D 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~-~ 470 (644)
+.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997432 1359999999999999999999999999999999999999999999999999852 2 4
Q ss_pred hHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 471 PMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
...+|+.++||+|++ .+|..|++|||.++... ...+.++.. ++++..+ +|.+ ........|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSG 153 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCH
Confidence 567888999999998 57889999999986421 112333322 2222222 2222 23455678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988753 78999999999987 569999999999999999
Q ss_pred ChhHHhcC
Q psy5743 622 SYAHLIKN 629 (644)
Q Consensus 622 t~~eLl~~ 629 (644)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=369.83 Aligned_cols=205 Identities=32% Similarity=0.443 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 46999999999999999999999999999999999999999999999998763 467889
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|. .|++||+.++... ..++++.++++..++.++ .......||||||||++|||||+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKG---QWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccc---hHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHh
Confidence 99999999998 6999999986421 235566777777766443 33445789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
++|+++||||||++||+.+...+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|++++.|+.+.
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 9999999999999999999999999998864 378999999999987 5699999999999999988653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=366.75 Aligned_cols=214 Identities=35% Similarity=0.549 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999964 469999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||+|++.+|.+ |++||+.++.... ....++++.++++..++.++..+.| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999998753210 0112445666777777766555444 5899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|+++||||||++||..+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988754 789999999999975 5899999999999999999999865
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=360.77 Aligned_cols=204 Identities=32% Similarity=0.525 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999964 22 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.++..+.| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998764210 0123456777788777765544433 4799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
++++|+++||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 7899999999999855 9999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=374.34 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~~ 477 (644)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred eEEEecCCC--CCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEPT--LFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+|++. +|..|+.||+.++... ...+.+ ++.++++..++.++. ......||||||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVA 146 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHH
Confidence 999999985 6788999999875221 012222 344455555553321 2345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 4789999999999984 5999999999999999999998754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=364.29 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 399 EIDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
-|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974222 36999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCC--CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 -RSQIGSVSQEPTLFSG-TIYENILYGVN--DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~g-TIreNI~~g~~--~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++.++|++|++.+|.+ |++||+.++.. .. .....+++.++++..++.++..+. ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3579999999999885 99999987421 00 011234566667777665444333 35799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999864
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=366.49 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.. +|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999998887644 57889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++..-....+.++..+ .+.++++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999985 99999987632100122222111 112233333 4555556677899999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++|++|||||||++||+.+...+.+.+.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998765 478999999999766 66999999999999999999998753
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=378.68 Aligned_cols=215 Identities=30% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999998754 4578899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||||++.+|. .|++||+.+.... ...+..+ +.++++..++ +...++.++ +||||||||++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la 150 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLA 150 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHH
Confidence 99999999986 6999999864321 1123332 3333444333 344566654 7999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999875 4789999999999985 5999999999999999999999753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=365.92 Aligned_cols=213 Identities=33% Similarity=0.483 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999973 469999999999999999999999999999999999999999999999999987653 477899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+||++.+|.+ |++||+.++.+.. ..+ ++++.++++..++.++. .....+|||||+||++|||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999975 9999999864321 111 23344455555443322 2334689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|++++|||||++||.+++..+.+.|.+..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998754 689999999999875 5999999999999999999999754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=369.23 Aligned_cols=215 Identities=27% Similarity=0.436 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+ ++.|++||+.++...... ..++++.++++..++.++ .......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 678999999986421100 112345555666555332 233457899999999999999
Q ss_pred Hc------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 556 LI------KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 556 ll------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++ .+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 6999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=367.54 Aligned_cols=229 Identities=31% Similarity=0.503 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC------CccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID------GVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id------g~~i~~~~~~ 472 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++ |+++..++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 469999999999999999999999999999999999999999666655 5778777888
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++|++|++.+|.+ |++||+.++.......++ +++.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 899999999999999976 999999976321101122 23455666666654331 123456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++++|||||++||..+++.+.+.|.++.+++|+|+|||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 66999999999999999999999
Q ss_pred hcCCCcHHHHH
Q psy5743 627 IKNPNSMFNKL 637 (644)
Q Consensus 627 l~~~~~~y~~l 637 (644)
.+.+...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87644445443
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=366.17 Aligned_cols=225 Identities=32% Similarity=0.519 Sum_probs=191.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--ChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~~ 472 (644)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 469999999999999999999999999999999999874 4899999999998753 456
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++|++|++.+|++|++||+.++.......+ ++++.++++.+++.+++..+ ....+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 78899999999999999999999997632111112 24456667777776655422 34567789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|++|+|||||++||..+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998755 8899999999999999999997
Q ss_pred cCCCcHH
Q psy5743 628 KNPNSMF 634 (644)
Q Consensus 628 ~~~~~~y 634 (644)
..+.+.+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6544443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=368.55 Aligned_cols=227 Identities=30% Similarity=0.462 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
.+.+++++++|.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999953 4699999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++|++|++.+|..|++|||.++.... .....+++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 56788999999999999999999999874210 01124567788888887655433 2346778999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe--------CCeEEEe
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD--------KGKIVEI 620 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~--------~G~ive~ 620 (644)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999999877889999999999875 599999996 8999999
Q ss_pred cChhHHhcCCCcHHH
Q psy5743 621 GSYAHLIKNPNSMFN 635 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~ 635 (644)
|+++++++.+...+.
T Consensus 238 g~~~~~~~~~~~~~~ 252 (261)
T PRK14263 238 GPTAQIFQNPREQLT 252 (261)
T ss_pred CCHHHHHhCCCcHHH
Confidence 999999865333343
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=374.04 Aligned_cols=216 Identities=30% Similarity=0.532 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 477 (644)
|+++||+++|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 3469999999999999999999999999999999999999999999999999852 334568899
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|+|++|++ .+|+.|++|||.++.... ..+. +++.++++..++.++. + .....|||||+||++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVA 147 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHH
Confidence 99999997 588999999999863211 1222 3455556665554321 2 234579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||++.+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 789999999999986 5999999999999999999998753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=369.70 Aligned_cols=221 Identities=32% Similarity=0.507 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999853 456
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+|+.++||+|++.+|. .|++||+.++..... ...++++.++++..++.+++. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999987532100 011234555666666543322 23345667899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe------CCeEEE
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD------KGKIVE 619 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~------~G~ive 619 (644)
|||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+ +.||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 999999999999999999999999999999999999999887779999999999987 4699999997 899999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=385.56 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=178.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc----cCCCCChHHHh----cceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV----DIKELDPMYLR----SQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~----~i~~~~~~~lr----~~i~~V~Q~~~ 486 (644)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++..++...+| ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 67777766553 57999999999
Q ss_pred CCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 487 LFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 487 Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
+|+ .|++||+.++.... ..+ .+++.++++..++.++.... ..+||||||||++|||||+.+|+
T Consensus 117 l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 998 79999999874210 112 34556677777776554333 34799999999999999999999
Q ss_pred EEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 562 ILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 562 IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.++...|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 9999999999999999999999988754 78999999999986 66999999999999999999999875444444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=348.32 Aligned_cols=172 Identities=44% Similarity=0.750 Sum_probs=162.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ..++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 356999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|++|++||+ ||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~ 114 (173)
T cd03246 80 YLPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGN 114 (173)
T ss_pred EECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 115 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 115 PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999998875 37899999999999999999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=363.27 Aligned_cols=201 Identities=28% Similarity=0.487 Sum_probs=169.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 46789999
Q ss_pred EecCCCC---CcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 481 VSQEPTL---FSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 481 V~Q~~~L---f~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|+|++.+ |+.|++||+.++..... ...++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999987 66899999998643100 012345566666666544332 23457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+||||++++|++|||||||++||+++...+.+.|.+.. +++|+|+|||+++.+. .||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 5789999999999985 48999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=369.66 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEecCCC-CCcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPT-LFSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~-Lf~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|++|++. .+..|++||+.++..... ..+++++.++++..++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 556899999988632100 0122345556666555332 23345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||++.+|+++||||||++||+++...+.+.|+++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999988753 68999999999999 5699999999999999999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=362.96 Aligned_cols=212 Identities=28% Similarity=0.459 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998876543 56899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998753110 0123456777888887766554444 4799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|+++||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 789999999999885 4999999999999999999999864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=361.75 Aligned_cols=205 Identities=31% Similarity=0.457 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr~ 476 (644)
|+++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 347999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ceEEEecCCCC-CcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++|++|++.+ ++.|++||+.++... ...+++ ++.++++..++.++. ......||||||||++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVG 147 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHh-cCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHH
Confidence 99999999987 567999999986311 012333 344455555544332 2344689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||++++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999998874 46899999999999865 8999999999985
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=370.51 Aligned_cols=217 Identities=27% Similarity=0.411 Sum_probs=188.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 469999999999999999999999999999999999999999999999999998888888889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++|++|++.+|. .|++||+.++.... ....++++.++++..++.++ .......||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 999999999875 69999998763110 00123355666666665433 234557899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++||||++++|+++||||||++||+++...+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999977 55999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=359.00 Aligned_cols=220 Identities=32% Similarity=0.520 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~~~~lr 475 (644)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4788999999964 46899999999999999999999999999999999999999999999999 66663 3334
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++||+|.|+.-||. .||++||+||-+-. +...+.++.+.++.+++...-.+.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999986 89999999997211 1234667777888888876655555 6899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+||||||..+|++|+||||.+|||++-.+.+..-|+++.. +.|+++|||+.+.. +.||+|++|++|+|.+.|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999988888877766542 78999999998865 78999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
...+...|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 87655443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=369.04 Aligned_cols=232 Identities=27% Similarity=0.429 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~ 472 (644)
-|+++||+++|++. .+.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 134799999999999999999999999999999999999999999999999999866666
Q ss_pred HHhcceEEEecCCC--CCc-ccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 473 YLRSQIGSVSQEPT--LFS-GTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
..++.++||+|++. ++. -|+.+|+.+...... ...++++.++++..++.+.. .+ .....||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH------AS----YYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH------Hh----cCchhcCHH
Confidence 66778999999985 444 389999875321100 01234566677777763211 12 233589999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999976 99999999999999999
Q ss_pred hhHHhcCC-CcHHHHHHHh
Q psy5743 623 YAHLIKNP-NSMFNKLMKY 640 (644)
Q Consensus 623 ~~eLl~~~-~~~y~~l~~~ 640 (644)
++++...+ ...+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 234 TADVLASPLHELTKRLIAG 252 (267)
T ss_pred HHHHhcCCCCHHHHHHHHh
Confidence 99998653 2456667653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.52 Aligned_cols=223 Identities=24% Similarity=0.412 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 4799999999999999999999999999999999999999999999999999988866654 46
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC------------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS------------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~------------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++|++|++.+|.+ |++|||.++.... ....+++ .+.. ....++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999863210 0000000 0000 1111223332 555556677789999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 6899999999999854 9999999999999999
Q ss_pred ChhHHhcC
Q psy5743 622 SYAHLIKN 629 (644)
Q Consensus 622 t~~eLl~~ 629 (644)
+.+++...
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99998653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=366.74 Aligned_cols=224 Identities=31% Similarity=0.495 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 471 (644)
-|+++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3899999999963 469999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+++.++|++|++.+|..|++||+.++..... ...++++.++++.+++.+.+ ..........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 577889999999999999999999987531100 01123445556666654333 2234556679999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||.++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999985 5999999999999999999998
Q ss_pred hcCCCc
Q psy5743 627 IKNPNS 632 (644)
Q Consensus 627 l~~~~~ 632 (644)
..++..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14255 235 FLNPKE 240 (252)
T ss_pred hcCCCC
Confidence 765433
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=366.73 Aligned_cols=228 Identities=25% Similarity=0.385 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----CCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-----IKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 473 (644)
-|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 469999999999999999999999999999999999999999999999999 88777654
Q ss_pred ----HhcceEEEecCCC--CC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChh
Q psy5743 474 ----LRSQIGSVSQEPT--LF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGG 545 (644)
Q Consensus 474 ----lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGG 545 (644)
+++.++||+|++. ++ +.|+.+||.+........+..+..+ ...++++.+ |++ +.....+..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 3588899864210000011122211 122334444 232 3566778899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988654 789999999999997 599999999999999999
Q ss_pred hhHHhcCCCcHHHH
Q psy5743 623 YAHLIKNPNSMFNK 636 (644)
Q Consensus 623 ~~eLl~~~~~~y~~ 636 (644)
++++..++...|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998654444544
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=371.62 Aligned_cols=218 Identities=27% Similarity=0.496 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChH
Q psy5743 399 EIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~ 472 (644)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccc-cccCCCCCCChh
Q psy5743 473 YLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGG 545 (644)
Q Consensus 473 ~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGG 545 (644)
..|+.++|++|+| .+|+.|++|||.++... ...+.++ +.++++..+ +++ ........||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgG 149 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN-FGFSEDEAKEKALKWLKKVG-----------LSEDLISKSPFELSGG 149 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcC-----------CChhHhhCCcccCCHH
Confidence 6788999999998 58889999999876321 0123332 333344443 332 234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecCh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~ 623 (644)
||||++|||||+.+|++|||||||++||+.+...+.+.|.++. ++.|+|++||+++.+ +.||+|++|++|++++.|++
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998874 478999999999987 56999999999999999999
Q ss_pred hHHhc
Q psy5743 624 AHLIK 628 (644)
Q Consensus 624 ~eLl~ 628 (644)
+++.+
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 98865
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=375.67 Aligned_cols=215 Identities=33% Similarity=0.498 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.+
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998764 35678899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++||+.+.... ...+.++.. ++++..+ +++.+++.+ ..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~----~~LSgG~~qrv~la 147 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRY-FGMSTREIEAVIPSLLEFAR-------LESKADVRV----ALLSGGMKRRLTLA 147 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCC-------ChhHhcCch----hhCCHHHHHHHHHH
Confidence 99999999885 6999999853221 012333332 2333333 333444444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+++|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999998874 4789999999999985 5999999999999999999998753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=360.44 Aligned_cols=203 Identities=25% Similarity=0.472 Sum_probs=171.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|.+ |++||+.++.... ..+ ++++.++++..++ +........+||||||||++|||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~ 141 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLEL-----------SEYANKRVEELSKGNQQKVQFIA 141 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCC-----------hHHHhCcHhhCCHHHHHHHHHHH
Confidence 99999999975 9999998753210 011 2233444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 142 al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998864 4789999999999885 59999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=361.55 Aligned_cols=213 Identities=31% Similarity=0.545 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ + +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 2 7999999999999999999999999999999999999999999999999987655 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|. .|++||+.++..... ...++++.++++..++.+++.+ ....||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHH
Confidence 9999999995 799999997643210 0123345566666666554433 335799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|++++|||||++||..+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988754 799999999999986 4999999999999999999998765
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=373.25 Aligned_cols=221 Identities=31% Similarity=0.484 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999964 469999999999999999999999999999999999986 6899999999998653 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----------------CCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----------------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----------------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
..+|+.++||+|++.+|++|++||+.++..... ...++++.++++..++.+ ++++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHh
Confidence 678889999999999999999999998632100 011334555566555433 344556
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEE-EEEe
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQI-CVLD 613 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~I-ivl~ 613 (644)
.....+||||||||++|||||+++|+||||||||++||..+...+.+.|+++.+++|+|+|||+++.+. .||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 777889999999999999999999999999999999999999999999999877899999999999975 59997 5689
Q ss_pred CCeEEEecChhHHhcC
Q psy5743 614 KGKIVEIGSYAHLIKN 629 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~ 629 (644)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=366.43 Aligned_cols=222 Identities=32% Similarity=0.507 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5999999999963 36899999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++..... ..+ ++++.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987531100 011 3445667777776555442 34566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC-----CeEEE
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK-----GKIVE 619 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~-----G~ive 619 (644)
||++||||++++|++|||||||++||.++...+.+.|.++. .++|+|+|||+++.+. .||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998864 4799999999999885 6899999999 99999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|+++++.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (261)
T PRK14258 237 FGLTKKIFNSP 247 (261)
T ss_pred eCCHHHHHhCC
Confidence 99999997653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=357.40 Aligned_cols=204 Identities=33% Similarity=0.516 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 477 (644)
|+++||+++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 455678889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++||+|++.+|. .|++||+.++.......+.+ ++.++++..+ ++..+......||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVG-----------LADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------CHhHhhhCccccCHHHHHHHHH
Confidence 999999999997 69999998763210112222 2333333333 3333444557899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
|||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 789999999999985 5999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=376.43 Aligned_cols=230 Identities=21% Similarity=0.339 Sum_probs=189.4
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHH
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 474 (644)
|+++|++++|+.. ....+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++..++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7899999999642 23469999999999999999999999999999999999996 589999999999999887765
Q ss_pred h----cceEEEecCCCC--C-cccHHHHHhcCCC---CCC------CCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 475 R----SQIGSVSQEPTL--F-SGTIYENILYGVN---DSS------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 475 r----~~i~~V~Q~~~L--f-~gTIreNI~~g~~---~~~------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
+ +.|+||+|++.. + ..||.+|+..... ... ...++++.++++..++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 4 479999999973 3 3589999964210 000 011345677777777754211 12333
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G 615 (644)
...||||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999998764 789999999999995 59999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHH
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l 637 (644)
+|+|.|+.+++.+++...|.+.
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999987655667653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=381.15 Aligned_cols=212 Identities=26% Similarity=0.434 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr 475 (644)
|++ |++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 22 3 99999999999999999999999999999999999999999999998753 244568
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+.++||+|++.+|. .|++|||.++.+. .+++++.++++..++.++..+. ..+||||||||++|||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalar 141 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAK---SMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGR 141 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhh---hhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHH
Confidence 89999999999996 6999999998543 4567778888888776554433 3689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..++.
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999999988754 68999999999977 4599999999999999999999987643
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=355.76 Aligned_cols=205 Identities=30% Similarity=0.510 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGV-NDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~-~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||+|++.+|.+ |++||+.++. +.. ...+++++.++++..++.+...+.| ..||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998742 110 0123456677777777765544444 3799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
++++|+++||||||++||.++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 789999999999875 599999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=364.11 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=176.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh-c
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR-S 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr-~ 476 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..++....+ .
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 46999999999999999999999999999999999994 79999999999999988876654 4
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC------CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS------SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~------~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
.++||+|++.+|.+ |++||+.+...... ..+ ++++.++++..++.+. -.+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE------FLNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh------hcccccc---cCcCHH
Confidence 59999999999986 89999976421100 011 1233444444443211 0122221 259999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998875 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
+++.-
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=365.91 Aligned_cols=221 Identities=31% Similarity=0.483 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 4699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++|++|++.+|+.|++|||.++..... ...++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 577889999999999999999999998632100 0123445666777776544432 2345667899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe---------CCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD---------KGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~---------~G~ive 619 (644)
++|||||+++|++|||||||++||..+...+.+.|.++.+++|+|+|||+++.+ +.||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999987789999999999988 5699999997 899999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|+.+++..+
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=374.73 Aligned_cols=214 Identities=23% Similarity=0.392 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 4567888999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+||++.+|.+ |++||+.+..... ..+ .+++.++++..++ +.........||||||||++|||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGL-----------RPEQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCC-----------chHhcCchhhCCHHHHHHHHHHH
Confidence 99999999976 9999998643210 012 2334444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999999999998778999999999998755 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=365.42 Aligned_cols=215 Identities=28% Similarity=0.410 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC--------CcEEEECCccCCCCCh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--------NGKILIDGVDIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--------~G~I~idg~~i~~~~~ 471 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 46999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcceEEEecCCC-CCcccHHHHHhcCCCCCC----CC---CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 472 MYLRSQIGSVSQEPT-LFSGTIYENILYGVNDSS----SV---TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~----~~---~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..+++.++||+|++. +|+.|++||+.++..... .. +++++.++++.. |+++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888989999999986 678999999988632100 01 122334444444 44455666778999
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEE
Q psy5743 544 GGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICV 611 (644)
Q Consensus 544 GGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iiv 611 (644)
||||||++||||++ .+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 689999999999985 6999999
Q ss_pred EeCCeEEEecChhHHhc
Q psy5743 612 LDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl~ 628 (644)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999864
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=366.05 Aligned_cols=231 Identities=31% Similarity=0.445 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh--
Q psy5743 400 IDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-- 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-- 471 (644)
|+++||+|+|++. .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+++
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 13579999999999999999999999999999999999999999999999999988776
Q ss_pred -HHHhcceEEEecCCC--CC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhH
Q psy5743 472 -MYLRSQIGSVSQEPT--LF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQ 546 (644)
Q Consensus 472 -~~lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQ 546 (644)
..+|+.++|++|++. ++ +.|++||+.+........+.++ ....+.+.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 356889999999983 43 4799999865311000011111 111222333332 5653 4566778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
|||++||||++.+|++|||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 789999999999997 5999999999999999999
Q ss_pred hHHhcCCCcHHHHHH
Q psy5743 624 AHLIKNPNSMFNKLM 638 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~ 638 (644)
+++... ++.|..-+
T Consensus 237 ~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTF-SSPAGRVL 250 (268)
T ss_pred hhccCC-CCHHHHHH
Confidence 999865 45554433
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=360.95 Aligned_cols=229 Identities=22% Similarity=0.387 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC----CCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~l 474 (644)
.|+++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3689999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEecCCC-CCc--ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 475 RSQIGSVSQEPT-LFS--GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 475 r~~i~~V~Q~~~-Lf~--gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++.++||+|++. .|. .|+.+|+.+.... .....++++.++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 444 5888887542100 011345667777887776442 2345666789999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|++||||||||+||..+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 689999999999985 59999999999999999999998
Q ss_pred cCCCc-HHHHHHHhh
Q psy5743 628 KNPNS-MFNKLMKYQ 641 (644)
Q Consensus 628 ~~~~~-~y~~l~~~q 641 (644)
+++.. .++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 65333 444455443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=358.95 Aligned_cols=213 Identities=29% Similarity=0.422 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 475 (644)
++++||+|+|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998632 3689999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhc-CccccccCCCCCCChhHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKN-GFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~-Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+.++|++|++.+|++ |++||+.++..... ....++.. ....+++ .++. |+..........|||||+||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~----~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----KKRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHH----HHHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 899999999999997 99999997532100 00111111 0011110 1122 23333344567999999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCc--hHHhhcCEEEEEeCCeEEEec
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL--STIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl--~~i~~aD~Iivl~~G~ive~G 621 (644)
|||++++|+++||||||++||+.+.+.+.+.|.+.. +++|+|++||++ +....||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998864 478999999998 456789999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=363.29 Aligned_cols=224 Identities=30% Similarity=0.443 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCC-----C
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL-----D 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~-----~ 470 (644)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999963 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 471 PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
...+|+.++|++|++.+|. .|++||+.++..+.. ...++++.++++..++.+. +...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 4567888999999999888 599999997632100 0112345555555554332 2345
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKG 615 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G 615 (644)
...||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 567999999999999999999999999999999999999999999998753 78999999999975 669999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHHHH
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
++++.|+++++ . .....+++.
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~ 250 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYR 250 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHh
Confidence 99999999996 2 235555554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=355.59 Aligned_cols=207 Identities=29% Similarity=0.409 Sum_probs=175.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 475 (644)
++++|+++.|++.. ++.+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++..+++. .+|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 25699999999999999999999999999999999999999999999999999877754 468
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|. .|+.||+.++.......+.+ ++.++++..++.+++. .....||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 89999999999998 69999999764211112222 3444555555544433 34458999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
+||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998889999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=374.80 Aligned_cols=214 Identities=32% Similarity=0.490 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.+
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999997654 5678899
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLF-SGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||||++.+| ..|++||+.+..... ..+.++ +.++++..+ +++..++.+ .+||||||||++||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA 184 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLA 184 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHH
Confidence 9999999987 569999998643211 123222 223333333 344455555 47999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999998875 4799999999999985 599999999999999999999875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=377.02 Aligned_cols=215 Identities=28% Similarity=0.469 Sum_probs=179.6
Q ss_pred EEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHHhcceE
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYLRSQIG 479 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~lr~~i~ 479 (644)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999987543 345688999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCC-CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSV-TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
||+|++.+|.. |++||+.++....... .++++.++++..++. .........||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 9999999875321100 122345555555443 3344455789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998754 689999999999885 599999999999999999999987644333
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=370.68 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=172.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIr 493 (644)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+|||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 456778899999999999976 999
Q ss_pred HHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 494 ENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 494 eNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
||+.++.... ..+ ++++.++++..++.+. .......||||||||++|||||+++|++|||||||
T Consensus 85 e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 85 ENLEMMGRLY-GLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9998753210 112 2345555555554332 22334689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 570 SALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999998875 4789999999999985 599999999999999999999865
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=352.23 Aligned_cols=475 Identities=19% Similarity=0.210 Sum_probs=337.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHH----HHHHHhhHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL----INRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i----~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
.+++......+..+..|......-+...++.+-++.+.++ ...||.-.+.++. =+|+++|+++.-..+.....++
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l 206 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNL 206 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhh
Confidence 3344444445556666666666666666666666666554 2334443333333 3799999998877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPP-VAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKL 281 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~ 281 (644)
+.+++.++.+...++-..++++.+.+....+ -.++...+.+..-+...++.+...+..-.-++...|.++|-.|+.++.
T Consensus 207 ~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~ 286 (659)
T KOG0060|consen 207 LKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQV 286 (659)
T ss_pred hccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCch
Confidence 6666667777777776666666665544433 445566666666677777777777777777788899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcCHhHHHHHHHHHHH----HHHH
Q psy5743 282 EMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMV----SYETITVGNLSSFLLYAAY----IGIS 353 (644)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v----~~g~~t~g~l~a~~~~~~~----~~~~ 353 (644)
+.....+..++..+.......++.+...+.++.-.+..++...+-+..+ ..+.++..++...+..-.. +...
T Consensus 287 E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~ 366 (659)
T KOG0060|consen 287 EHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISA 366 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHH
Confidence 8888777777777666655555544444444332222221111111111 2346777777665544333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cc-CC-------CCCccCCCCCccEEEEEEEEEcCCC
Q psy5743 354 IGGLSNFYSELNKGLGACHRLWEIMEREPL-------------IS-TS-------GGKFFSHSLKGEIDFNNIRFSYPSR 412 (644)
Q Consensus 354 l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~-------------~~-~~-------~~~~~~~~~~~~I~~~~vsf~Y~~~ 412 (644)
+..+......+.+-..-.+|+.|+.+.-.+ +. +. ++.....+.+..|++++|+++-|.+
T Consensus 367 f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~ 446 (659)
T KOG0060|consen 367 FGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN 446 (659)
T ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC
Confidence 444444445554444556777776542100 00 00 0001112334579999999999875
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
.+.+.+|+||+|+.|+.+.|+||||||||+|++.|.|+++..+|++.--.+.-. +.+-||||.|+.=.||+
T Consensus 447 -g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTL 517 (659)
T KOG0060|consen 447 -GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTL 517 (659)
T ss_pred -CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccch
Confidence 567788899999999999999999999999999999999999999985432111 35999999999999999
Q ss_pred HHHHhcCC----CCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 493 YENILYGV----NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 493 reNI~~g~----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
||-+.|-. ++...++|+++.+.++.+++...+++ -+|+|+++- |=..-||+||+||+|.||-+|.+|++-||||
T Consensus 518 RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 99999862 23346899999999999999776555 679997654 5578899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 568 ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+|||||.+.|..+.+.+++. +.|-|-|.||.+.-+.-|.++.|+.
T Consensus 597 ~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 597 CTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999887 9999999999999999999999985
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=357.05 Aligned_cols=228 Identities=25% Similarity=0.393 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----CCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-----IKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 473 (644)
-|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77777654
Q ss_pred H----hcceEEEecCCC--C-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChh
Q psy5743 474 L----RSQIGSVSQEPT--L-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGG 545 (644)
Q Consensus 474 l----r~~i~~V~Q~~~--L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGG 545 (644)
. ++.++|++|++. + +..|+.+|+.+........+..+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3 467999999985 2 345888998642100000011111 12223444444 333 4556678899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|.+..+ +.|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 789999999999997 599999999999999999
Q ss_pred hhHHhcCCCcHHHH
Q psy5743 623 YAHLIKNPNSMFNK 636 (644)
Q Consensus 623 ~~eLl~~~~~~y~~ 636 (644)
++++..++...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998654444543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=345.85 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 474 (644)
.+.++||+|.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 35679999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+.++|++|++.+|.+ |++|||.++.. .. ..+....||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~----~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR----CK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh----hc---------------------------cccchhhCCHHHHHHHHHH
Confidence 8899999999988874 99999987621 00 1234467999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccC-chHH-hhcCEEEEEeCCeEEEec
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHR-LSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHr-l~~i-~~aD~Iivl~~G~ive~G 621 (644)
||++++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999998754 4576766554 4554 679999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=359.23 Aligned_cols=204 Identities=31% Similarity=0.445 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999988643 24689
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++.... ..+ ++++.++++..++.+ .......+||||||||++|||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG-----------AEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHHHHHH
Confidence 9999999987 69999998753210 112 233445555555432 233455789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe--CCeEEEecCh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLD--KGKIVEIGSY 623 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~--~G~ive~Gt~ 623 (644)
|++++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|+ +|++++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999998873 3799999999999874 599999998 5999998865
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=337.48 Aligned_cols=170 Identities=36% Similarity=0.641 Sum_probs=157.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998765 67788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|.+ |++||+. |||||+||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHc
Confidence 99999999987 9999983 99999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
+|++++|||||++||..+.+.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999875 3589999999999887 6999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=339.13 Aligned_cols=172 Identities=43% Similarity=0.662 Sum_probs=159.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--hHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--PMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr~~ 477 (644)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999963 46999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|++.+|. .|++||+.+. ||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al 115 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARAL 115 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHH
Confidence 999999999886 5999998642 999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
+++|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999988765 589999999999997 599999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=351.23 Aligned_cols=207 Identities=27% Similarity=0.395 Sum_probs=178.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|. .|++||+.++... ...+++++.++++..++.++.. .....||||||||++||||+++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTL-LGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHH-cCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhc
Confidence 9999999886 6999999875321 1134667777777777654332 2346799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
+|++++|||||++||+.+.+.+.+.|.++. +++|+|++||+++.+ ..||+|++|++|++++.|+.++
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999998875 478999999999998 4699999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=335.89 Aligned_cols=171 Identities=61% Similarity=0.940 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. +.++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999752 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+ ||||||||++||||++.+
T Consensus 80 ~~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~ 114 (171)
T cd03228 80 YVPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRD 114 (171)
T ss_pred EEcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|+
T Consensus 115 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 115 PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=341.33 Aligned_cols=182 Identities=30% Similarity=0.488 Sum_probs=162.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr 475 (644)
.|+++|++|.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 257999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
++++|++|++.+|.+ |++||+.++.. ++ .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-------------~~------------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-------------LR------------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-------------Hh------------------------cCCHHHhHHHHHHH
Confidence 899999999998885 99999986510 00 89999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK-GKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~-G~ive~G 621 (644)
|++++|+++||||||++||.++...+.+.|++.. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999998875 37899999999983 578999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=331.17 Aligned_cols=164 Identities=37% Similarity=0.539 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 578999999964 256999999999999999999999999999999999999999999999983 5899
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.++++|++||+.++ ....||||||||++||||++++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccccccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999652 2468999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
|+++||||||++||.++.+.+.+.|.+. ++|+|+|||+++....||+|++|++|.
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999999887 699999999999999999999998864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=356.25 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh-c
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR-S 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr-~ 476 (644)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+||.++..+++...+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999973 46999999999999999999999999999999999994 79999999999999988877665 5
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC------CCCCCHHHHHHHHHHHhhccchh--hhhcCccccccCCCCCCChhHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVND------SSSVTKSDIIHAAKEANAYGFVI--DFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~------~~~~~~~~i~~a~~~a~l~~~i~--~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.++|++|++.++.. |..+|+.+..+. ....+..++.+.++ +.++ .+|.++.+... ...||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~--~~~LS~G~~ 151 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLME-----EKIALLKMPEDLLTRSV--NVGFSGGEK 151 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHH-----HHHHHcCCChhhcccCC--CCCCCHHHH
Confidence 79999999987764 444443321100 00011111111111 1111 24444433321 237999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh--cCEEEEEeCCeEEEecChh
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt~~ 624 (644)
||++||||++++|+||||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999988754 6899999999999987 8999999999999999998
Q ss_pred HHh
Q psy5743 625 HLI 627 (644)
Q Consensus 625 eLl 627 (644)
+..
T Consensus 232 ~~~ 234 (248)
T PRK09580 232 LVK 234 (248)
T ss_pred HHH
Confidence 553
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=339.83 Aligned_cols=183 Identities=31% Similarity=0.522 Sum_probs=163.2
Q ss_pred cEEEEEEEEEcCCC---CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSR---PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~---~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~ 473 (644)
.|+++||+|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999741 1357999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++.++|++|++.+|. .|++||+.++.. . . .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----~--------------~-------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----L--------------R-------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----h--------------c-------------------cCCHHHHHHHHH
Confidence 7889999999999987 499999976411 0 0 899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HH-hhcCEEEEEeCCeEEEec
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS-TI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i-~~aD~Iivl~~G~ive~G 621 (644)
|||++++|+++||||||++||..+.+.+.+.|+++. +++|+|+|||+++ .+ ..||+|++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998875 4789999999996 44 569999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=336.75 Aligned_cols=172 Identities=28% Similarity=0.506 Sum_probs=157.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|++++| +|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...++ ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999998874 456788
Q ss_pred eEEEecCC----CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEP----TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|++|++ ..++.|++||+.++. . ||||||||++||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-----~-----------------------------------LS~G~~qrl~la 116 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-----L-----------------------------------LSGGNQQKVVLA 116 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-----h-----------------------------------cCHHHHHHHHHH
Confidence 99999995 345589999997651 0 999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
||++++|+++||||||++||+++.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999998874 47899999999998866 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=345.08 Aligned_cols=203 Identities=28% Similarity=0.459 Sum_probs=169.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHHhc
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYLRS 476 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~lr~ 476 (644)
++ |++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999974 234 99999999 999999999999999999999999999999999999986432 345688
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
.++||+|++.+|. .|++||+.++.+... ...++++.++++.. |++.........||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-----------GLDHLLNRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHc-----------CCHhHhhcCcccCCHHHHHHHHHHH
Confidence 9999999999996 599999998643200 01122333344433 4444455667899999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 789999999999884 69999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=351.75 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
-|+++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..+++..+++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999999988777665
Q ss_pred -ceEEEecCCCCCcc-cHHHHHhcCCCCC------CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCC-CCC
Q psy5743 477 -QIGSVSQEPTLFSG-TIYENILYGVNDS------SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI-MLS 543 (644)
Q Consensus 477 -~i~~V~Q~~~Lf~g-TIreNI~~g~~~~------~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~-~LS 543 (644)
.+++++|++.+|.+ |+++|+.++.... ...+ .+++.++++..++.+ +.+..... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 48999999999986 7999987652100 0011 123344455444421 11223232 599
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~ 620 (644)
||||||++||||++++|+++||||||++||..+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q psy5743 621 GSYAHL 626 (644)
Q Consensus 621 Gt~~eL 626 (644)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=357.64 Aligned_cols=216 Identities=31% Similarity=0.485 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++.+|++ +..+|+||||+|++|+++|++||||||||||+|+|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999963 35799999999999999999999999999999999999999999999999988776 78899999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|||||+|.++. -|++||+.|...-.. ..+++++.+.++..++.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999886 499999998543211 12356788888888875411 3345679999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||+.+|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++.+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999876 3 699999999999977 99999999999999999999764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.08 Aligned_cols=212 Identities=26% Similarity=0.413 Sum_probs=175.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
.|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 4899999999963 3569999999999999999999999999999999999999999999999998752 233 46
Q ss_pred eEEEecCCCC---CcccHHHHHhcCCCC-------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 478 IGSVSQEPTL---FSGTIYENILYGVND-------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~L---f~gTIreNI~~g~~~-------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
++|++|++.+ +..++++|+.++... ....+++++.++++..++.++. ++. ...||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQ----IGELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCC----cccCCHHHH
Confidence 9999999865 566899999764210 0011234455666666664432 333 346999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+ ..||+++.+ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999998875 378999999999887 569999777 899999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=348.30 Aligned_cols=208 Identities=28% Similarity=0.452 Sum_probs=180.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 3899999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEecCCCCCc---ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS---GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~Lf~---gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+|++|++.++. .|+++|+.+. +. .+++++.++++..++.+++.. ....||||||||++||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PG---TKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-cc---ccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999998865 4899998764 22 457788888888887655432 346899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCc
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNS 632 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~ 632 (644)
++++|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++ ++++.|+++++.. ..
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~ 211 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HP 211 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CH
Confidence 9999999999999999999999999999988753 78999999999998 55999999965 7999999999874 35
Q ss_pred HHHHHH
Q psy5743 633 MFNKLM 638 (644)
Q Consensus 633 ~y~~l~ 638 (644)
.|.+++
T Consensus 212 ~~~~~~ 217 (251)
T PRK09544 212 EFISMF 217 (251)
T ss_pred HHHHHh
Confidence 666665
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=338.15 Aligned_cols=186 Identities=34% Similarity=0.493 Sum_probs=163.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-hc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-RS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 476 (644)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||+++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999999887665 45
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
.++|++|++.+|.++..+|+. .. ....||||||||++||||+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l---------------------------~~-----------~~~~LS~G~~qrv~laral 119 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL---------------------------RY-----------VNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred cEEEeecChhhccCccHHHHH---------------------------hh-----------ccccCCHHHHHHHHHHHHH
Confidence 699999999998864333332 00 1147999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh--hcCEEEEEeCCeEEEecChhHHh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR--KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~--~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999988754 789999999999998 69999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=346.13 Aligned_cols=210 Identities=29% Similarity=0.474 Sum_probs=172.0
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC----CCcEEEECCccCCCCChHHHhcceEEEecCCC-CCc--
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYLRSQIGSVSQEPT-LFS-- 489 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-Lf~-- 489 (644)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998754 223468999999995 444
Q ss_pred ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 490 GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 490 gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
-|+.||+.+...... ...++++.++++..++.+ + ++........||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589999865321100 012334566666666532 1 23445667789999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHHH
Q psy5743 567 EATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
||||+||..+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 789999999999985 69999999999999999999998654444443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=313.75 Aligned_cols=195 Identities=34% Similarity=0.531 Sum_probs=173.5
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
.+.++|+|+||++.+||++||+||||||||||+|.++-+.+|++|++++.|.|++.++++.+|.+|+|+.|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 493 YENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 493 reNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
.||+-|--.- ....+.+...+.++.+++.+ +.+..+-.+||||+||||||+|-|---|+||+|||+|||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 9999875310 11345666666666666543 445566788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCeE
Q psy5743 572 LDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKI 617 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~~G~i 617 (644)
||..+.+.|.+-|.++. ++..++-|||+... +++||+++.+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999998876 47799999999998 999999999999986
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=346.46 Aligned_cols=218 Identities=23% Similarity=0.411 Sum_probs=180.0
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++||++. .+|+|+||++++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 56788774 16999999999999999999999999999999999995 59999999999999888888889999
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCCC--CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 481 VSQEPT-LFSGTIYENILYGVNDSSSV--TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 481 V~Q~~~-Lf~gTIreNI~~g~~~~~~~--~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++|++. .+..|+++|+.++.+..... .++++.++++..++ +.........||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL-----------DDKLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCC-----------HhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999985 55789999999874321101 12334445555443 33334456789999999999999999
Q ss_pred c-------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 558 K-------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 558 ~-------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
. +|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 478999999999965 6699999999999999999999864
Q ss_pred CCCcHHHHHHH
Q psy5743 629 NPNSMFNKLMK 639 (644)
Q Consensus 629 ~~~~~y~~l~~ 639 (644)
. ....+.+.
T Consensus 223 ~--~~~~~~~~ 231 (248)
T PRK03695 223 P--ENLAQVFG 231 (248)
T ss_pred c--hHHHHHhC
Confidence 3 34455543
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=339.55 Aligned_cols=197 Identities=29% Similarity=0.468 Sum_probs=165.5
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHhcc
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLRSQ 477 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr~~ 477 (644)
++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 469999999999999999999999999999999999999999999999999765542 245778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|++|++.+|. .|++||+.++..... ...++++.++++..++.++ ......+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 999999999997 699999998532100 0123445556666655332 2334567999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999999988753 78999999999999999999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=332.21 Aligned_cols=177 Identities=37% Similarity=0.581 Sum_probs=158.8
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 481 VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 481 V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
++| +++..++.+++. .....||||||||++||||++++|
T Consensus 78 ~~q------------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p 116 (180)
T cd03214 78 VPQ------------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEP 116 (180)
T ss_pred HHH------------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCC
Confidence 999 344455443322 345789999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
+++||||||++||+++...+.+.|.++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999988755 68999999999997 669999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=388.63 Aligned_cols=228 Identities=30% Similarity=0.442 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-++++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246899999999999999999999999999999999999999999999999998776
Q ss_pred hH---HHhcceEEEecCCC--CCc-ccHHHHHhcCCC--CC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 471 PM---YLRSQIGSVSQEPT--LFS-GTIYENILYGVN--DS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 471 ~~---~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~~--~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
.. .+|+.|+||+|+++ ++. -|+.||+.++.. .. ....++++.++++..++.+ ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 53 46778999999984 664 599999986421 00 0011234555555555531 11223345
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
.||||||||++|||||+.+|++||||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999988753 689999999999985 4999999999999
Q ss_pred EEecChhHHhcCCCcHHHH
Q psy5743 618 VEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 618 ve~Gt~~eLl~~~~~~y~~ 636 (644)
++.|+.+++..++...|.+
T Consensus 543 v~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEecCHHHHhcCCCCHHHH
Confidence 9999999998754555644
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=365.86 Aligned_cols=231 Identities=31% Similarity=0.445 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc--CCC
Q psy5743 399 EIDFNNIRFSYPSR--------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD--IKE 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~--i~~ 468 (644)
-++++|++..|... ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999841 13467999999999999999999999999999999999999999999999987 232
Q ss_pred CChHHHhcceEEEecCCCCC---cccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 469 LDPMYLRSQIGSVSQEPTLF---SGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf---~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
-+....|+.+-+|+|||+-. ..||+++|.---.... ...++++.+.++.+++.+. ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 23456778999999999843 4799999873211000 1112345666677766531 23344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||||||+||||||..+|+++|+|||||+||+.+...|.+.|.++.+ +-|.|+|||+++.++. ||||.||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988764 6899999999999965 9999999999999
Q ss_pred EecChhHHhcCCCcHHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|.|+.+++.+++...|.+...
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999987888887654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=380.66 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999888777665 46
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++||+|++.+|.. |++||+.++... ....++++.++++..++.++ .......||||||||++|||||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-RQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-chHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999987432 11123455666666655332 2233457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999998874 4789999999999875 599999999999999999998754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=342.88 Aligned_cols=194 Identities=35% Similarity=0.449 Sum_probs=161.4
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHH
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENI 496 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI 496 (644)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998775542 489999999998 6999999
Q ss_pred hcCCCC-CCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 497 LYGVND-SSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 497 ~~g~~~-~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
.++... ....+++ ++.++++..++. .........||||||||++||||++++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLT-----------EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCH-----------HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 875210 0012332 234444444443 223344568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999988653 789999999999875 59999999999999999876653
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=321.37 Aligned_cols=159 Identities=34% Similarity=0.586 Sum_probs=148.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~i 478 (644)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999964 3699999999999999999999999999999999999999999999999999988764 467789
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++| ||||||||++||||+++
T Consensus 78 ~~~~q----------------------------------------------------------LS~G~~qrl~laral~~ 99 (163)
T cd03216 78 AMVYQ----------------------------------------------------------LSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEe----------------------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 99999 99999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVE 619 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive 619 (644)
+|++++|||||++||.++.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999998874 4789999999999775 599999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=332.99 Aligned_cols=195 Identities=28% Similarity=0.384 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999999875 4567888999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ ..|++||+.++... ..++.++.++++..++.+ ..+.++ ..||||||||++||||+++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF--SPGAVGITELCRLFSLEH-------LIDYPC----GLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc--CcchHHHHHHHHHcCCch-------hhhCCh----hhcCHHHHHHHHHHHHHhc
Confidence 999999986 57999999986321 123345555555555432 223333 4699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
+|++|||||||++||..+...+.+.|.++. +++|+|++||+.+.+.+||.-++
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999998863 57899999999999999997654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=335.75 Aligned_cols=225 Identities=35% Similarity=0.547 Sum_probs=193.5
Q ss_pred cEEEEEEEEEcCCCCC---------------------CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 399 EIDFNNIRFSYPSRPD---------------------AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
.|+++||+.-+..+++ ..-++|+||+|+.||+..|-|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888777653221 1237899999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCChHHHh----cceEEEecCCCCCc-ccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhc
Q psy5743 458 KILIDGVDIKELDPMYLR----SQIGSVSQEPTLFS-GTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKN 529 (644)
Q Consensus 458 ~I~idg~~i~~~~~~~lr----~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~ 529 (644)
+|++||.|+..++.+++| +.+++|+|+.-||. -||.||..||-+-..- ..+++..++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988874 46999999999886 7999999999753211 12345677889999988877766
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-Hhhc
Q psy5743 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKS 606 (644)
Q Consensus 530 Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~a 606 (644)
..||||++||+.|||||..||+||++|||+||||+--....++.|.++.+ .||+|+|||+|+. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 47999999999999999999999999999999999998899988876542 7999999999986 5889
Q ss_pred CEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 607 NQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 607 D~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
|||-.|++|+|++.||++|++.+|-..|
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 9999999999999999999998765555
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=332.18 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=169.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 46899999999999999999999999999999999999999999999999987653 56788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ +.|++||+.+..+. .+++++.++++..++.++. ++ ....||||||||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD---HSDEQVEEALARVGLNGFE-------DR----PVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc---ccHHHHHHHHHHcCChhhh-------cC----chhhCCHHHHHHHHHHHHHhc
Confidence 999999886 58999999987543 4577788888888875432 22 245799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH-HhhcCEEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST-IRKSNQICVL 612 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~-i~~aD~Iivl 612 (644)
+|+++||||||++||+.+.+.+.+.|.+.. +++|+|+|||+... ...+|+++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999998764 47899999998665 5667888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=321.96 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
++++|++-.|.. ..+|++|||++++||+++++|++|+|||||++.|+|+.+|.+|+|.++|.|+....++.. |.-|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999964 479999999999999999999999999999999999999999999999999999998877 4459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+||||.-.+|. -||+||+.+|.-. ..+++-.+ ..+++..+-+| -+.......|.+|||||+|-+||||||.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~---~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYA---RRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhc---cccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 99999999997 5999999988422 11111100 00111122234 3555567889999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
.+|++|+|||||.+|-+.--+.|.+.|+++.+ +.|+++|-++.... +-||+.|||++|+|+.+|+.+||.++
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999874 55999999998875 68999999999999999999999875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=333.38 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=168.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45778899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++. .|++||+.++.+.....+++++.++++..++.++. + .....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-------D----VPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-------h----CChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 69999998875321113456777788887765432 2 2345799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVL 612 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl 612 (644)
+|+++||||||++||+++...+.+.|.+.. +++|+|+|||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 47899999999999954 5677666
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=337.55 Aligned_cols=231 Identities=28% Similarity=0.451 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-C----CCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-P----QNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p----~~G~I~idg~~i~~~~~~~ 473 (644)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.++|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2468999999999999999999999999999999999998 4 6899999999999999886
Q ss_pred Hh----cceEEEecCCC-CCc------ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 474 LR----SQIGSVSQEPT-LFS------GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 474 lr----~~i~~V~Q~~~-Lf~------gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
+| +.|++|+|||. =|| .-+.|-+..-... ......++..+.++.+++.+-- ..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 43 36999999976 232 2244444432110 0001244677778888876521 112233468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~iv 618 (644)
||||||||+.||-|+..+|++||-||||+|||..+.++|.+.|+++.+ +.|+|+|||++..+ ..||+|+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 88999999999987 569999999999999
Q ss_pred EecChhHHhcCCCcHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~ 638 (644)
|.|+.+++.+++.-.|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998777776644
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=378.54 Aligned_cols=215 Identities=26% Similarity=0.397 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999988876554 467
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC---CC---CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS---SS---VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~---~~---~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++||+|++.+|.. |++||+.++.... .. .+ ++++.++++..++.+. .+ ....+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LD----EKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cc----cchhhCCHHH
Confidence 9999999998875 9999998763210 00 11 1234444444444221 23 3345799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998874 3789999999999985 59999999999999999988
Q ss_pred HHh
Q psy5743 625 HLI 627 (644)
Q Consensus 625 eLl 627 (644)
++.
T Consensus 231 ~~~ 233 (510)
T PRK09700 231 DVS 233 (510)
T ss_pred hCC
Confidence 865
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=375.25 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHH-Hh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMY-LR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr 475 (644)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 4699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC--CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+.++||+|++.+|.. |++||+.++.... ...+. +++.++++..++. .........|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 789999999998874 9999999874210 00122 2344444444432 2223344679999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998864 4789999999999885 5999999999999999998876
Q ss_pred h
Q psy5743 627 I 627 (644)
Q Consensus 627 l 627 (644)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=339.74 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=159.5
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe-cCCCCC-cccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS-QEPTLF-SGTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q~~~Lf-~gTI 492 (644)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 667776 5799
Q ss_pred HHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 493 YENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
+||+.+.... ...+.++.. ++++..++ ++..++.+ ..||||||||++||||++.+|+++|||||
T Consensus 113 ~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 113 IDSFYLLAAI-YDLPPARFKKRLDELSELLDL-------EELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------hhHhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999765321 112333332 23333332 22334443 56999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 569 TSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999998753 689999999999875 59999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=315.29 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+++.+++-+|++ ...+++||||+++.||.++|.||+|+||||+++.|.+++.|++|.|.+||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3458999999999999999999999999999999999999999999999999887 4678899999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+++-+.-|+. -|.||||.|+..- ...++.++ .++.+.+. ..| |++.....+-.++|-|+|||++|||||.+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L-~~l~~~~~--kari~~l~---k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARL-NGLSRKEI--KARIAELS---KRL--QLLEYLDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHH-hhhhhhHH--HHHHHHHH---HHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhc
Confidence 9997777775 6999999987431 01233332 22222222 222 23333333444699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||++++||||||+||..+.+.+.+-|.++.. ++++|+-||-++.++ -||+|+++.+|+++..|+.+++.+
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999998875 899999999999997 799999999999999999999875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=373.22 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=178.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.+
T Consensus 5 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 899999999963 469999999999999999999999999999999999999999999999999977665443 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC---CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS---SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+||+|++.+|.. |++||+.++.... ...+. +++.++++..++.+ ........||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHH
Confidence 999999988864 9999999864210 00122 23344444444322 22233457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998864 3689999999999885 59999999999999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=377.87 Aligned_cols=221 Identities=31% Similarity=0.504 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSR--------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-|+++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1357999999999999999999999999999999999999 58999999999998776
Q ss_pred hHH---HhcceEEEecCC--CCCc-ccHHHHHhcCCCCCC-CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 471 PMY---LRSQIGSVSQEP--TLFS-GTIYENILYGVNDSS-SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 471 ~~~---lr~~i~~V~Q~~--~Lf~-gTIreNI~~g~~~~~-~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
... +|+.++||+|++ .+|. .|++||+.++..... ..+ ++++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 543 477899999998 3665 599999987521000 011 233444444444321 1223445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
..||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 67999999999999999999999999999999999999999999998753 789999999999885 599999999999
Q ss_pred EEEecChhHHhcCC
Q psy5743 617 IVEIGSYAHLIKNP 630 (644)
Q Consensus 617 ive~Gt~~eLl~~~ 630 (644)
+++.|+.+++++.+
T Consensus 504 i~~~~~~~~~~~~~ 517 (529)
T PRK15134 504 VVEQGDCERVFAAP 517 (529)
T ss_pred EEEEcCHHHHhcCC
Confidence 99999999998643
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=359.35 Aligned_cols=231 Identities=28% Similarity=0.449 Sum_probs=191.3
Q ss_pred cEEEEEEEEEcCCCCCC-ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC----CcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ----NGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~----~G~I~idg~~i~~~~~~~ 473 (644)
-++++|++..|...... .+++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 48999999999754222 5899999999999999999999999999999999999988 899999999999999877
Q ss_pred Hh----cceEEEecCCC-CCcc--cHHHHHh----cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 474 LR----SQIGSVSQEPT-LFSG--TIYENIL----YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 474 lr----~~i~~V~Q~~~-Lf~g--TIreNI~----~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+| +.|++|+|+|+ .+|- ||-+-|+ ...+.......++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 46999999987 6664 4544443 33211011234556666777776553332 2345789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
|||||||+.||+||..+|++||+||||.+||+.+++.|++.|+++. .+.++|+|||++..+ ..||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 588999999999998 5599999999999999
Q ss_pred ecChhHHhcCCCcHHHHHH
Q psy5743 620 IGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~ 638 (644)
.|+.+++++++.-.|.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999988766776543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=328.78 Aligned_cols=194 Identities=25% Similarity=0.339 Sum_probs=164.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999963 46999999999999999999999999999999999999999999999999998765 45778999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|. .|++||+.++.+.. ...++++.++++..++.++. ++ ....||||||||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIH-GGAQRTIEDALAAVGLTGFE-------DL----PAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHc-CCcHHHHHHHHHHcCCHHHh-------cC----ChhhcCHHHHHHHHHHHHHhc
Confidence 9999999886 79999998764321 11234577777777776543 22 235799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|++++|||||++||..+.+.+.+.|.++ .+++|+|+|||+...+.. |+.+
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 99999999999999999999999999886 357899999999865543 5544
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=379.50 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=172.5
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC--CcEEEECCccCCCCChHHHhcceEEEecCCCCCc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 490 (644)
++.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++. ...+++++||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 999999999874 245678999999999996 5
Q ss_pred cHHHHHhcCCCCC--CCCCHHHHH----HHHHHHhhccchhhhhcCccccccCC-CCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 491 TIYENILYGVNDS--SSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGER-GIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 491 TIreNI~~g~~~~--~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~-G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
|++||+.++.... ...++++.. +.++..+ |++..||.||+. ...||||||||++|||||+++|+||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 9999999863110 113444332 2333332 445679999864 7789999999999999999999999
Q ss_pred EeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 564 LLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 564 iLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|++++.|+++++.
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 9999999999999999999999875 58999999999984 5779999999999999999999986
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=385.70 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCC
Q psy5743 399 EIDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~ 469 (644)
++++.++. +++.. .++++|+|+|++++|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666666 55322 2567999999999999999999999999999999999999885 899999999875
Q ss_pred ChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhh--hhcCccccccCC--CCCC
Q psy5743 470 DPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGER--GIML 542 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~--lp~Gl~T~ige~--G~~L 542 (644)
...+|+.++||+|++++|. .||+|||.|+..... ..+.++.. ..+++.++. +++..||.||+. +.+|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-----ERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678899999999999995 599999998743211 12333221 112222332 456789999985 4899
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCch--HHhhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLS--TIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~--~i~~aD~Iivl~~G~ive 619 (644)
|||||||++|||||+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999998754 799999999996 468999999999999999
Q ss_pred ecChhHHh
Q psy5743 620 IGSYAHLI 627 (644)
Q Consensus 620 ~Gt~~eLl 627 (644)
.|+++++.
T Consensus 248 ~G~~~~~~ 255 (617)
T TIGR00955 248 LGSPDQAV 255 (617)
T ss_pred ECCHHHHH
Confidence 99999885
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=330.84 Aligned_cols=199 Identities=25% Similarity=0.290 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999988753 345689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++.+......++.+.++++..++. ..+++. ...||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~----~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDTL----VRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccCC----hhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998753210111233444455555432 223333 4679999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
++|++++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+ ..||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 468999999999988 56899999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=371.88 Aligned_cols=210 Identities=21% Similarity=0.251 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 889999999964 35999999999999999999999999999999999999999999999999888777777888899
Q ss_pred EEecCCCC---------CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 480 SVSQEPTL---------FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 480 ~V~Q~~~L---------f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|++|++.+ +.-|++||+.++. ..++++.++++..++.+. .......||||||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 144 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-----KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKT 144 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-----hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHH
Confidence 99998753 2468999987642 234566667766665432 2334467999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+.+|++||||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988743 689999999999885 589999999999999999998865
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=329.18 Aligned_cols=196 Identities=27% Similarity=0.344 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999963 468999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ +.|++||+.+.... ...+++++.++++..++.++. +.| ...||||||||++||||+++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~-~~~----------~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAF-LGGEELDIAAALEAVGLAPLA-HLP----------FGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHh-cCCcHHHHHHHHHHcCCHHHH-cCC----------hhhcCHHHHHHHHHHHHHhc
Confidence 999888765 68999999875321 113456677888888875432 222 24799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+|+++||||||++||..+.+.+.+.|.+.. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999998 99988854
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=372.34 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=176.4
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGS 480 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~ 480 (644)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 469999999999999999999999999999999999999999999999999977654 445778999
Q ss_pred EecCCCCCc-ccHHHHHhcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 481 VSQEPTLFS-GTIYENILYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 481 V~Q~~~Lf~-gTIreNI~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+|++.+|. .|++||+.++...... .+.++..+.+ .+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 5999999986421000 1222222111 1122222 3333344556789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 4789999999999875 59999999999999999988763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=371.97 Aligned_cols=211 Identities=28% Similarity=0.420 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999976554 456788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC--CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS--SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++||+|++.+|.+ |++||+.++.... ...+ ++++.++++..++. .........||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHH
Confidence 9999999998875 9999999864210 0012 22344445544432 222334567999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999998864 4789999999999885 5999999999999977653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.53 Aligned_cols=223 Identities=26% Similarity=0.427 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~ 472 (644)
-|+++|++++|++. .+.++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 135799999999999999999999999999999999999987 799999999999887754
Q ss_pred H---Hh-cceEEEecCCC--CCc-ccHHHHHhcCCC---CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 473 Y---LR-SQIGSVSQEPT--LFS-GTIYENILYGVN---DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 473 ~---lr-~~i~~V~Q~~~--Lf~-gTIreNI~~g~~---~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
. +| +.++||+|++. ++. -|+++|+.++.. .. ....++++.++++..++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 34 57999999985 443 589999874210 00 0012345566666666543110 12334567
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998874 3789999999999875 59999999999999
Q ss_pred EecChhHHhcC
Q psy5743 619 EIGSYAHLIKN 629 (644)
Q Consensus 619 e~Gt~~eLl~~ 629 (644)
+.|+.++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=378.49 Aligned_cols=228 Identities=25% Similarity=0.402 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC----------
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---------- 467 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~---------- 467 (644)
-|+++|++++|+... +.++|+||||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 489999999996321 347999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-cceEEEecCC--CCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCcccccc
Q psy5743 468 ELDPM---YLR-SQIGSVSQEP--TLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVG 536 (644)
Q Consensus 468 ~~~~~---~lr-~~i~~V~Q~~--~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ig 536 (644)
..+.. .+| +.||||+|+| .++. -|++|||.++.......+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 4799999998 5765 5999999875210000222 344555555554210 12234
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEe
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLD 613 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~ 613 (644)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 45568999999999999999999999999999999999999999999998753 78999999999987 5599999999
Q ss_pred CCeEEEecChhHHhcCCCcHH
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y 634 (644)
+|+|++.|++++++..+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999876433333
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=327.91 Aligned_cols=195 Identities=35% Similarity=0.561 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCC------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSRP------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++++|+++|++|+|+++|+|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78999999997532 136899999999999999999999999999999999999999999999999988876
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.. .-++++.+.++.+|+.+ +..+.| ..|||||+|||+|
T Consensus 82 --------------------------~~----~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 --------------------------KE----ERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred --------------------------hh----HHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 11 24677999999999876 333444 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||.-+|++++.|||||+||...+.+|.+.+.++.+ +-|.++|||+++.++. ||+|.||..|+|+|.|+-+++..+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 9999999999999999999999999999999977653 7899999999999965 899999999999999999999988
Q ss_pred CCcHHHHHH
Q psy5743 630 PNSMFNKLM 638 (644)
Q Consensus 630 ~~~~y~~l~ 638 (644)
+.-.|-+..
T Consensus 201 p~HpYTk~L 209 (268)
T COG4608 201 PLHPYTKAL 209 (268)
T ss_pred CCCHHHHHH
Confidence 777776553
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=332.10 Aligned_cols=202 Identities=27% Similarity=0.398 Sum_probs=163.0
Q ss_pred EEEEEEEEEcCCC---C-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC--Cc--cCCCCCh
Q psy5743 400 IDFNNIRFSYPSR---P-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID--GV--DIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~---~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id--g~--~i~~~~~ 471 (644)
|+++|++++|++. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999998 43 6766665
Q ss_pred HH---H-hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 472 MY---L-RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 472 ~~---l-r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
.. + ++.++||+|++.+|.. |++|||.+..... ..+ ++++.++++..++.+.. ....+..|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~L 150 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERL----------WHLPPATF 150 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccC
Confidence 54 3 4579999999998874 9999997632110 122 23444445554443221 12346689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVL 612 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl 612 (644)
|||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999999999998875 3789999999999885 69999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=378.31 Aligned_cols=217 Identities=31% Similarity=0.451 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH---
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l--- 474 (644)
-|+++|++++|++.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 2579999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 -RSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.++|++|++.+|+ .|+.||+.++.... ..+. ++..+.++.. |++..+......|||||+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRL-----------GLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHC-----------CChhhhcCCcccCCHHHHH
Confidence 578999999999997 59999998753210 0111 1223333333 4445555556789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++|||||+++|+++||||||++||.++.+.+.+.|+++. +++|+|+|||+++.+..||++++|++|++++.|+.+|..
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999999999998875 479999999999999999999999999999999999876
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=369.44 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHH-Hhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMY-LRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr~ 476 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998877654 456
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC---CCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS---SVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++||+|++.+|.. |++||+.++..... ..+. +++.++++..++.+.. .+.+ ...|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRP----VGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCc----hhhCCHHHHH
Confidence 79999999988875 99999998642100 0112 2233344444432110 1222 3579999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.++.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998864 4689999999999985 4999999999999999987664
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=329.75 Aligned_cols=197 Identities=25% Similarity=0.415 Sum_probs=164.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCC---CcccHHHHHhcC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG 499 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L---f~gTIreNI~~g 499 (644)
|++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++. ..|++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 468999999876
Q ss_pred CCC-------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 500 VND-------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 500 ~~~-------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
... ....+++++.++++..++.++. + .....||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------D----RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-------c----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 0012234577777777765443 2 233469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 573 DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
|+.+...+.+.|.++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.++ ..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~--~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP--APWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh--HHHHHHh
Confidence 9999999999998875 4789999999999875 59999999 7999999999998753 4555554
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=369.58 Aligned_cols=224 Identities=24% Similarity=0.421 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCC--CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC-Ccc---CCCCC--
Q psy5743 399 EIDFNNIRFSYPS--RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVD---IKELD-- 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~--~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id-g~~---i~~~~-- 470 (644)
-|+++|++++|++ ..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 123569999999999999999999999999999999999999999999996 643 33333
Q ss_pred -hHHHhcceEEEecCCCCCc-ccHHHHHhcCCC-CCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 -PMYLRSQIGSVSQEPTLFS-GTIYENILYGVN-DSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 -~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|++++||+|++.+|. -|++||+.++.. ... ...++++.++++..++.+.- .+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 2345778999999998887 599999986421 000 01123445555555543200 0001233456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 789999999999885 5999999999999999999
Q ss_pred hHHhc
Q psy5743 624 AHLIK 628 (644)
Q Consensus 624 ~eLl~ 628 (644)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=332.29 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=171.3
Q ss_pred cEEEEEEEEEcCCC-----------------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 399 EIDFNNIRFSYPSR-----------------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-----------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+|+++||+-.|... ...++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47777776555321 2346899999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHH----HHHHHhhccchhhhhcCcccccc
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIH----AAKEANAYGFVIDFKNGFDTIVG 536 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~----a~~~a~l~~~i~~lp~Gl~T~ig 536 (644)
+| .+++++|++.+++ .|++||+.++... ...+.++..+ +++..++ +..+.
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l-----------~~~~~ 138 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLC-MGFKRKEIKAMTPKIIEFSEL-----------GEFIY 138 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-----------chhhc
Confidence 99 3677888887764 6999999874211 0133444433 3333333 33344
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeC
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDK 614 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~ 614 (644)
.....||||||||++||||++++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++
T Consensus 139 ~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 139 QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 5667899999999999999999999999999999999999999999998764 4789999999999885 4999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
|++++.|+++++.+.. ..|.+
T Consensus 219 G~i~~~g~~~~~~~~~-~~~~~ 239 (264)
T PRK13546 219 GKLKDYGELDDVLPKY-EAFLN 239 (264)
T ss_pred CEEEEeCCHHHHHHHh-HHHHH
Confidence 9999999999998763 33433
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=322.80 Aligned_cols=177 Identities=31% Similarity=0.502 Sum_probs=147.6
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcceEEEecCC--CCCc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQIGSVSQEP--TLFS 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~--~Lf~ 489 (644)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .....+++.++||+|++ .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3569999999999999999999999999999999999999999999999999852 23456788999999998 5888
Q ss_pred ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy5743 490 GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliL 565 (644)
.|++||+.++... ...++ +++.++++..++.++.. .....||||||||++||||++++|+++||
T Consensus 84 ~tv~~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 84 ADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred ccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999885321 01222 34555666666544332 23467999999999999999999999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q psy5743 566 DEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST 602 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~ 602 (644)
||||++||+.+.+.+.+.|.+.. +++|+|+|||+++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999998874 47899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=350.46 Aligned_cols=214 Identities=25% Similarity=0.304 Sum_probs=172.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++|+|++...+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999864345799999999999999999999999999999999999999999999999651
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHH----HHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i----~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++.+.+.++. .|++||+.++... ...+.++. .++++..++.++ .......||||||||++||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~-~~~~~~e~~e~i~elLe~lgL~~~-----------ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGKF-----------IYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHcCChhH-----------hhCCcccCCHHHHHHHHHH
Confidence 2333444443 5999999874310 01333333 344555554433 2334568999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+ -
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~-~ 234 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-Y 234 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh-H
Confidence 99999999999999999999999999999998864 47899999999998854 999999999999999999999864 3
Q ss_pred cHHHHHH
Q psy5743 632 SMFNKLM 638 (644)
Q Consensus 632 ~~y~~l~ 638 (644)
..|.+.+
T Consensus 235 ~~~~~~~ 241 (549)
T PRK13545 235 DEFLKKY 241 (549)
T ss_pred HHHHHHH
Confidence 4454433
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=328.60 Aligned_cols=196 Identities=29% Similarity=0.309 Sum_probs=156.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.++|++.+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.... ...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~- 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG- 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccc-
Confidence 667778888853 57999999999999999999999999999999999999999999999998764211 111
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
.+..+.|++||+.++... ...+.+ ++.++++..++ +...++.+ ..||||||||++||||
T Consensus 94 -----~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LSgG~~qrv~lara 156 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRL-LGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV----KTYSSGMKARLAFAIA 156 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh----hhCCHHHHHHHHHHHH
Confidence 122357999999876421 012222 23333443333 22334443 5799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
++++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988643 589999999999875 59999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=367.79 Aligned_cols=218 Identities=24% Similarity=0.401 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEECCccCCCCCh-HHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILIDGVDIKELDP-MYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~-~~lr~ 476 (644)
-|+++|++++|+...+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223569999999999999999999999999999999999999 599999999999875543 44577
Q ss_pred ceEEEecCC---CCCc-ccHHHHHhcCCCC-CCC---CCH----HHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCC
Q psy5743 477 QIGSVSQEP---TLFS-GTIYENILYGVND-SSS---VTK----SDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLS 543 (644)
Q Consensus 477 ~i~~V~Q~~---~Lf~-gTIreNI~~g~~~-~~~---~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LS 543 (644)
.++||+|++ .+|. -|+.||+.++... ... .+. +++.++++..++ +. ........||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-----------KTASPELAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc-----------cCCCcccccccCC
Confidence 899999996 3554 6999999875210 000 111 223333333333 21 2234456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
||||||++||||++.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998864 4789999999999885 59999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+.+++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 988763
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=321.54 Aligned_cols=190 Identities=23% Similarity=0.358 Sum_probs=161.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 3455 599999999999999999999999999999999999999999999987643 35699
Q ss_pred EEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++. +|+.|++|||.++.+.. ..++++.++++..++.++ ....+.+||||||||++||||+++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc--ccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhc
Confidence 9999875 47789999999865421 135566666677665433 334567899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|+++||||||++||+.+.+.+.+.|++. .+++|+|+|||+++.++.||.|.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999999753 45799999999999999999874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=368.48 Aligned_cols=214 Identities=26% Similarity=0.453 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEEC---------------
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILID--------------- 462 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~id--------------- 462 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------CCC---hHHHhcceEEEecC-CCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHH
Q psy5743 463 --------GVDIK-------ELD---PMYLRSQIGSVSQE-PTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEA 518 (644)
Q Consensus 463 --------g~~i~-------~~~---~~~lr~~i~~V~Q~-~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a 518 (644)
|.++. ..+ ...+|+.++||+|+ +.+|. -|++||+.++... ...+. +++.++++..
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 33331 111 13467889999998 56776 5999999875221 01222 3344455555
Q ss_pred hhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy5743 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTI 596 (644)
Q Consensus 519 ~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~I 596 (644)
++.+ ........||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|
T Consensus 157 gl~~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 157 QLSH-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred CChh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 5432 23344578999999999999999999999999999999999999999999988743 7899999
Q ss_pred ccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 597 AHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 597 aHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||+++.+. .||+|++|++|++++.|+++++..
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999985 599999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=328.30 Aligned_cols=228 Identities=35% Similarity=0.499 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-++.+||...||-+. .-.+.++|||++++||+++|||+||||||||...|+|+.+++ |+|.++|.++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 488999999997421 134689999999999999999999999999999999999776 99999999999998
Q ss_pred hHH---HhcceEEEecCCC-CCc--ccHHHHHhcCC----CCCCC-CCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 471 PMY---LRSQIGSVSQEPT-LFS--GTIYENILYGV----NDSSS-VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 471 ~~~---lr~~i~~V~Q~~~-Lf~--gTIreNI~~g~----~~~~~-~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
.++ +|+++-+|+|||+ =+| .||.+-|.-|- |.... --++++.+|++.+|++.-.. ..-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcCC
Confidence 766 5789999999998 332 57766665442 22110 12456777888888765432 1223
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
..+|||||||||||||+.-+|++++|||||||||..-..+|.+.++++. .+-+=++|+|+|..++. ||+|+||.+|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 5799999999999999999999999999999999999999999998864 46799999999999965 99999999999
Q ss_pred EEEecChhHHhcCCCcHHHHH
Q psy5743 617 IVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 617 ive~Gt~~eLl~~~~~~y~~l 637 (644)
|||+|+-+++.+++...|.+-
T Consensus 505 iVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999888888653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=303.43 Aligned_cols=216 Identities=28% Similarity=0.472 Sum_probs=186.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||+|+|||||+|.|.|.+.|++|++.++|++++.+.+.++.++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998864 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCC---CCCHHH--HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSS---SVTKSD--IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~---~~~~~~--i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++||+..| |.=|++|-+.+|+-... +..+++ ..+++..+++..+- |..-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-----------~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA-----------GRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh-----------ccchhhcCchHHHHHHHH
Confidence 99999874 89999999999984321 122333 45566777655432 233357999999999999
Q ss_pred HHHcc------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 554 RALIK------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 554 RAll~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|.|.+ ++++|+||||||+||..-...+++..+++. .+..|+.|-|+|... ..||||++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99974 345999999999999999999999998875 478999999999976 6799999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8853
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=294.57 Aligned_cols=210 Identities=26% Similarity=0.377 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH---
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l--- 474 (644)
-|++++++..-+.. .+-.||++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|+++..++.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888777643 23468999999999999999999999999999999999999999999999999999997643
Q ss_pred h-cceEEEecCCCCC-cccHHHHHhcCCCCCCC-C--CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 R-SQIGSVSQEPTLF-SGTIYENILYGVNDSSS-V--TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r-~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~-~--~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
| +++|+|+|..+|. +-|-.||+.+-..-..+ . ..+.-.+.++.+|+.+.+...| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 3 4799999999977 57999999864321110 1 1222445566676666555554 6899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
+|||||+...|+|||=||||-+||.+|-.+|.+.+..+. .+.|.|+|||+++...+|||++.|.+|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999987764 4779999999999999999999999999986
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=300.54 Aligned_cols=220 Identities=34% Similarity=0.473 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC---------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL--------- 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~--------- 469 (644)
.++++|++-+|.. ..+|++|||+.++|+.++|+|.|||||||+++++.=+-.|+.|+|.++|..|+.-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 6899999999964 3599999999999999999999999999999999999999999999999887532
Q ss_pred -C---hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC-CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 470 -D---PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDS-SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 470 -~---~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
| .+.+|.+.++|+|+..|.+ .|+.||..-+ |-. -..+. |+-+..+.++|+.+--...|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 2 3567899999999999987 7999998633 100 00122 22334466677665444333
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
..|||||.||.+|||||.-+|+++++||||||||++--..+++.++++. .+||.++|||.+...++ +.+|+.+.+|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 6799999999999999999999999999999999998888888888875 48999999999999977 689999999999
Q ss_pred EEecChhHHhcCCCcH
Q psy5743 618 VEIGSYAHLIKNPNSM 633 (644)
Q Consensus 618 ve~Gt~~eLl~~~~~~ 633 (644)
-|+|+++++..++.+.
T Consensus 231 EE~G~P~qvf~nP~S~ 246 (256)
T COG4598 231 EEEGPPEQVFGNPQSP 246 (256)
T ss_pred cccCChHHHhcCCCCH
Confidence 9999999999876653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=315.06 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=185.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-ce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-QI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~i 478 (644)
++++|++-+|.+ -.+++|+||++++||+++|+||+||||||++|++.|+|+|++|+|.++|.||..+++....+ -|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999964 46899999999999999999999999999999999999999999999999999999888754 49
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC---------CC--CHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS---------SV--TKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~---------~~--~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+--+|.+.+|.+ |+.||+..+.-... .. .+++ ..+.++.+ |++-.-.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----------gL~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----------GLGELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----------CCchhhcchhhcC
Confidence 999999999975 99999998732100 00 1222 22222333 5555566677789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
|+||+.|+-|||||..+|++|+||||.++|.++....+.+.|+++.+ +.|+++|-|+++.+ .-||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999999875 48999999999998 4599999999999999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
+|+++|..++
T Consensus 231 eG~P~eV~~d 240 (250)
T COG0411 231 EGTPEEVRNN 240 (250)
T ss_pred cCCHHHHhcC
Confidence 9999999864
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=361.45 Aligned_cols=212 Identities=19% Similarity=0.312 Sum_probs=171.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 28999999999999999999999999999999999999999999999999876554 456778
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCCCCC----C---C-CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 478 IGSVSQEP---TLFS-GTIYENILYGVNDS----S---S-VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 478 i~~V~Q~~---~Lf~-gTIreNI~~g~~~~----~---~-~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
++||+|++ .+|. -|++||+.++.... . . .+ .+++.++++..++. ++-.+++ ...
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQN----ITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCc----ccc
Confidence 99999984 5665 59999998763200 0 0 01 12233333433331 0122333 456
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
||||||||++|||||+.+|+|||||||||+||..+...+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 478999999999877 5699999999999999
Q ss_pred ecChhH
Q psy5743 620 IGSYAH 625 (644)
Q Consensus 620 ~Gt~~e 625 (644)
.|+..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887644
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=391.12 Aligned_cols=217 Identities=22% Similarity=0.378 Sum_probs=187.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++|++++|++ .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 35999999999963 24679999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+||++.+|+ -|++|||.++..- ...+ ++++.+.++..++ +........+||||||||++|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~l-kg~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQL-KGRSWEEAQLEMEAMLEDTGL-----------HHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHH
Confidence 999999999997 5999999875321 0122 2344555555544 333445567899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+.+|+|+|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+.++|.+
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999878899999999999985 599999999999999999999865
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=304.30 Aligned_cols=222 Identities=29% Similarity=0.492 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-c
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-Q 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~ 477 (644)
.+..+|+.-+|. .++|++++||+|++||.|++.||+|+||||....+.|+.+|++|+|.+||.|+..++...-.+ -
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 478899999996 357999999999999999999999999999999999999999999999999999999876543 5
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
|||+||++.+|.+ |++|||..--+- .+...+++.+...+++.++.+ .+...-...|..||||||.|+-|||||
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~----~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI----REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh----hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999986 999999865431 111112222222222223322 344455677899999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCc-hHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl-~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
..+|+.++||||++++|+.+-..|++.++.+.. +.-+++--|+. +|+.-|||.|++.+|+|..+|+++|++++
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999988765 44555555774 58999999999999999999999999975
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=338.53 Aligned_cols=188 Identities=36% Similarity=0.564 Sum_probs=158.6
Q ss_pred EECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----
Q psy5743 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT---- 507 (644)
Q Consensus 433 IvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~---- 507 (644)
|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.++||+|++.+|.. |++||+.|+.... ..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHHHH
Confidence 689999999999999999999999999999999987665 46789999999999975 9999999874210 122
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~ 587 (644)
++++.++++..++.++.. ....+||||||||++|||||+++|+++|||||||+||+.+...+.+.|+++
T Consensus 78 ~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 234555666666554433 334689999999999999999999999999999999999999999999887
Q ss_pred cC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 588 IE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 588 ~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.+...|
T Consensus 147 ~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 53 789999999999865 599999999999999999999987644434
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=373.98 Aligned_cols=217 Identities=20% Similarity=0.293 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.-|+++|++++|++ ..+++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 35999999999974 23579999999999999999999999999999999999999999999999999975 45677889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
|||+||++.++. -|++||+.+...- ...+.+ .+.++++..++.++ .......||||||||++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHH
Confidence 999999999886 5999999864210 012222 23344555554332 233346799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+.+|+|++||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. -||||++|++|++++.|+.++|.+
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999998864 5799999999999885 599999999999999999999854
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=391.18 Aligned_cols=216 Identities=28% Similarity=0.439 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 474 (644)
.++++||+++|+.+ .++.+|+|||++++|||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37899999999632 24579999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEecCCC-CCcccHHHHHhcCCCCC--CCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 475 RSQIGSVSQEPT-LFSGTIYENILYGVNDS--SSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 475 r~~i~~V~Q~~~-Lf~gTIreNI~~g~~~~--~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
|+.+|||+|++. ++..|+|||+.++..-. ...+++ ++.++++..++ .+-.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 56689999999863100 013333 34455555554 34579999999999999999
Q ss_pred HHHHHHHHHccCCC-EEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH--hhcCEEEEEeCC-eEEEecC
Q psy5743 548 QRIAIARALIKKSK-ILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTI--RKSNQICVLDKG-KIVEIGS 622 (644)
Q Consensus 548 QRiaLARAll~~p~-IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i--~~aD~Iivl~~G-~ive~Gt 622 (644)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++ .+++|+|+++|+++.. ..+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4579999999999973 689999999997 9999998
Q ss_pred hhH
Q psy5743 623 YAH 625 (644)
Q Consensus 623 ~~e 625 (644)
.++
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=338.52 Aligned_cols=214 Identities=31% Similarity=0.486 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-c
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-Q 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~ 477 (644)
-++++|++.+|++ .++|+|+||++.+||++|++|++|+|||||+|.|.|.|+|++|+|.+||++..-.++.+=++ -
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 47999999999999999999999999999999999999999999999999999888766655 4
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+.|.||..|+. -||.|||.+|++... -.|..++.+.++..=- .. .++...+++|+ +||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~-~l--g~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLA-RL--GLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHH-Hc--CCCCChhhhhh----hCCHHHHHHHHHH
Confidence 999999999996 599999999987422 2455666554443311 00 01122667766 5999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
||+..+++|+|||||||+|+....+.+.+.++++. ++.++|+||||++.+ +-||+|.||.||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999998889999998876 689999999999987 6699999999999997776
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=358.01 Aligned_cols=217 Identities=22% Similarity=0.324 Sum_probs=173.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCCh-HHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDP-MYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~-~~lr~ 476 (644)
-|+++|++++|+++.+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532234699999999999999999999999999999999999996 89999999999875543 56688
Q ss_pred ceEEEecCC---CCCc-ccHHHHHhcCCCC-CC---CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEP---TLFS-GTIYENILYGVND-SS---SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~---~Lf~-gTIreNI~~g~~~-~~---~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+++||+|++ .+|. .|++||+.++... .. ..+ ++++.++++..++.+. -.+. ....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFL----PIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccC----ccccCCH
Confidence 899999996 3565 6999999886311 00 011 1233444444443110 1223 3457999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||..+.+.+.+.|.++. ++.|+|+|||+++.+. .||+|++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 4789999999999885 599999999999998776
Q ss_pred hhH
Q psy5743 623 YAH 625 (644)
Q Consensus 623 ~~e 625 (644)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=357.89 Aligned_cols=212 Identities=27% Similarity=0.411 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999962 34799999999999999999999999999999999999999999999986 2479
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC---------------CCCCC--------HHHHHHHHHHHhhccc-------hhhh
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVND---------------SSSVT--------KSDIIHAAKEANAYGF-------VIDF 527 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~---------------~~~~~--------~~~i~~a~~~a~l~~~-------i~~l 527 (644)
+||+|+|.+|. -|++|||.++... ..... .+++.++++.++.++. +..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 00001 1245555555554321 1111
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 124456789999999999999999999999999999999999999999999886 4699999999999865 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 7799998654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=357.38 Aligned_cols=212 Identities=27% Similarity=0.378 Sum_probs=167.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 357999999999999999999999999999999999999999999999752 479
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--------------CCCC---------HHHHHHHHHHHhh-------ccchhhh
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS--------------SSVT---------KSDIIHAAKEANA-------YGFVIDF 527 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~--------------~~~~---------~~~i~~a~~~a~l-------~~~i~~l 527 (644)
|||+|+|.+++. |++||+.++.... .... ..++.+.++.++. .+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 9999998752100 0000 0111111211111 1111111
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
|++ ........||||||||++||||++.+|++||||||||+||+++...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123344679999999999999999999999999999999999999999999887 4699999999999865 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899998754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=354.64 Aligned_cols=211 Identities=23% Similarity=0.351 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999974 26999999999999999999999999999999999999999999999999987765 346778
Q ss_pred eEEEecCC---CCC-cccHHHHHhcCCCCC--C---CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEP---TLF-SGTIYENILYGVNDS--S---SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~---~Lf-~gTIreNI~~g~~~~--~---~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++||+|++ .+| +.|++||+.++.... . ..+ ++++.++++..++. +-........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 99999997 344 469999998752100 0 011 12233333333321 1123445567999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 4789999999999874 599999999999999998
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 87753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.00 Aligned_cols=212 Identities=20% Similarity=0.327 Sum_probs=171.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...++ ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 38999999999999999999999999999999999999999999999999875543 445678
Q ss_pred eEEEecCCC---CC-cccHHHHHhcCCCCCC---C--CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEPT---LF-SGTIYENILYGVNDSS---S--VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~~---Lf-~gTIreNI~~g~~~~~---~--~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++|++|++. +| +.|+.||+.++..... . .+ ++++.++++..++. +.........|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCccccCCH
Confidence 999999972 55 4899999987632100 0 01 12233333333331 0112333458999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||..+.+.+.+.|.++.+ +.|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999988653 78999999999988 5699999999999999999
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88764
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=318.97 Aligned_cols=195 Identities=25% Similarity=0.379 Sum_probs=158.4
Q ss_pred EEcCCCCCCccccceeEEEe-----CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 407 FSYPSRPDAVILNDLSLKIQ-----SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 407 f~Y~~~~~~~vL~~isl~i~-----~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
|+|++ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67875 3458999999997 68999999999999999999999999999999999984 69999
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 482 SQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 482 ~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
+|++. .++.|++||+.+...... ...+...++++..+ ++.........||||||||++|||||+++|
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFY-THPYFKTEIAKPLQ-----------IEQILDREVPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhcc-ccHHHHHHHHHHcC-----------CHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99987 578999999986533200 11222334444443 333344555689999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE--EecChhHHh
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV--EIGSYAHLI 627 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv--e~Gt~~eLl 627 (644)
+++||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+++..+ ..++++++.
T Consensus 135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999999988753 789999999999987 59999999876444 556666653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=354.60 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=166.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999983 3699
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC-------------CCCCCHH---HHHHHH----------HHHhhccchhhhhcCcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVND-------------SSSVTKS---DIIHAA----------KEANAYGFVIDFKNGFD 532 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~-------------~~~~~~~---~i~~a~----------~~a~l~~~i~~lp~Gl~ 532 (644)
||+|++.+|.. |++||+.++... ......+ .+.+.. ....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988864 999999875210 0000000 000000 001111222222 333
Q ss_pred ccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEE
Q psy5743 533 TIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQIC 610 (644)
Q Consensus 533 T~i-ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Ii 610 (644)
... ......||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+. .||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER--NSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEE
Confidence 222 2345689999999999999999999999999999999999999999999763 799999999999885 599999
Q ss_pred EEeCCeE-EEecChhHHhc
Q psy5743 611 VLDKGKI-VEIGSYAHLIK 628 (644)
Q Consensus 611 vl~~G~i-ve~Gt~~eLl~ 628 (644)
+|++|++ ++.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 47899998764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=309.73 Aligned_cols=196 Identities=27% Similarity=0.449 Sum_probs=177.2
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC----CCChHHHhcceEEEecCCCCCc-ccHHH
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK----ELDPMYLRSQIGSVSQEPTLFS-GTIYE 494 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~----~~~~~~lr~~i~~V~Q~~~Lf~-gTIre 494 (644)
++||+.+....+||-|+||||||||+|++.|+..|++|.|.+||.-+. .+...--+++||||+||..||. -|+|-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688999888999999999999999999999999999999999998774 4555667889999999999997 69999
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
|++||... .+.++..+++...|+...+.++| ..||||||||+||+|||+.+|++|++|||.|+||.
T Consensus 96 NL~YG~~~---~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWK---SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhcc---cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999875 56788888888888877777776 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
...++++-.|+++.+ +.-++.|||.+..+ +-||+|++|++|++...|.-+|.+++
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999999988765 45799999999976 67999999999999999999999865
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=291.20 Aligned_cols=143 Identities=34% Similarity=0.576 Sum_probs=134.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ .++++++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++| |||||+||++||||++++
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 9998 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|++++|||||++||.++...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999887 5899999999999855 89999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=311.69 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=155.9
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-ECCccCCCCChHHHhcceEEEecCCCCCcc-cHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-IDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYE 494 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIre 494 (644)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 787532 24467888875 9999
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
||.+.... ...+.++..+.+.. ...++..++++++ .||||||||++||||++++|+++||||||+++|+
T Consensus 69 nl~~~~~~-~~~~~~~~~~~~~~------~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASL-YGLDGDEFSHFCYQ------LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHH------HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 99875321 11344444332211 2345555666664 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..+
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 999999998876666789999999999985 699999999999999999888754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=351.91 Aligned_cols=203 Identities=20% Similarity=0.350 Sum_probs=173.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999983 479
Q ss_pred EEEecCCC--CCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPT--LFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~--Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|||+|++. ++. .|++||+.+.... ..+++++.++++..++.+ .........||||||||++||||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQE--GDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccC--CccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHH
Confidence 99999974 443 6999999754211 134556677777766521 11234456899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
++++|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999887 5699999999999865 9999999999998 88999998764
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=321.26 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=160.7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccCCCCCh
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-----------IDGVDIKELDP 471 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~ 471 (644)
.||+++|++ ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 468899963 2368999994 999999999999999999999999999999999996 88999877644
Q ss_pred HHHhc--ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRS--QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~--~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+..|. .+++++|++.++..++.+|+...-.. ...++++.++++..++ +.........||||||||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQR 147 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHH
Confidence 43433 37888887777765555555433111 0123455555555544 334455667899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
++||||++++|++++||||||+||.++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+ |++.+.|
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999999999988754 789999999999987 599999995 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=290.12 Aligned_cols=205 Identities=31% Similarity=0.458 Sum_probs=171.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.+++++.+|++. ..++|+|+|++|++||.++++||||||||||+|++.|+.+|..|+|.+||.+|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 5678899999874 3569999999999999999999999999999999999999999999999998876554 358
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+|+|++-|+. -|+.||+.||-.- .-++.+ ...+.+..+++.++=. ..-..||||||||+.|||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIAR 145 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHH
Confidence 9999999998 7999999998642 112322 2334455666655422 223579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEe--CCeEEEecC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLD--KGKIVEIGS 622 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~--~G~ive~Gt 622 (644)
||.-+|+.|+||||.+|||+-+.+.+++.+-++. .++-+++|||.++. +--|++++||+ .|+|++.=+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 9999999999999999999999999999998865 48999999999986 56799999997 579997644
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=280.00 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC--CCC----ChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KEL----DPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i--~~~----~~~ 472 (644)
+|+++|++|.|+. ..+|.||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|.|... ++. ...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5899999999964 3689999999999999999999999999999999999999999999988543 322 236
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHhcCCCCC-CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 473 YLRSQIGSVSQEPTLFS-GTIYENILYGVNDS-SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
.+|+.+|+|+|.-.|.. -|+-||+.-. |-. ...++ .+-.+.++...+.++-+++| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 78999999999999886 6999999633 210 01222 23445566667777766666 4699999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
.||+||||||..+|++|++||||+|||++-...|.+.|+++.. +.|-++|||..+..+ -|.+++.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988899999998764 889999999999885 58999999999999999998
Q ss_pred HHhcCCCcHHHHH
Q psy5743 625 HLIKNPNSMFNKL 637 (644)
Q Consensus 625 eLl~~~~~~y~~l 637 (644)
-.-......|.+.
T Consensus 227 ~ft~p~te~f~~y 239 (242)
T COG4161 227 CFTEPQTEAFKNY 239 (242)
T ss_pred hccCccHHHHHHH
Confidence 7754433344443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=348.31 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=171.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 477 (644)
-|+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...++.. +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998877654 4568
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCC----CCCCCC--CHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhH
Q psy5743 478 IGSVSQEP---TLFS-GTIYENILYGV----NDSSSV--TKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQ 546 (644)
Q Consensus 478 i~~V~Q~~---~Lf~-gTIreNI~~g~----~~~~~~--~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQ 546 (644)
++||||++ .+|. -|+.+|+.... +..... .++++.++++..+ +. .........|||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG~ 408 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN-----------IKFNHAEQAARTLSGGN 408 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcC-----------CCCCCccCccccCCcHH
Confidence 99999986 3665 49999996421 000000 1122333333333 32 22344456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++||||++.+|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+++..|+.+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999998874 4789999999999985 59999999999999999988
Q ss_pred HHhc
Q psy5743 625 HLIK 628 (644)
Q Consensus 625 eLl~ 628 (644)
++..
T Consensus 489 ~~~~ 492 (510)
T PRK15439 489 AINV 492 (510)
T ss_pred cCCH
Confidence 7653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=343.96 Aligned_cols=209 Identities=26% Similarity=0.296 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCC-CChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKE-LDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~-~~~~~lr~ 476 (644)
-|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999963 4689999999999999999999999999999999998876 69999999987642 23345678
Q ss_pred ceEEEecCCCCCc---ccHHHHHhcCCCC----CCCCC---HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 477 QIGSVSQEPTLFS---GTIYENILYGVND----SSSVT---KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~---gTIreNI~~g~~~----~~~~~---~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+++||+|++.++. .|+++++.++..+ ..... ++++.++++..++.+. ........|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 9999999987643 4677777543110 00011 2344455555544320 2233446799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh--cCEEEEEeCCeEEEe
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK--SNQICVLDKGKIVEI 620 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~ 620 (644)
|||++||||++.+|++|||||||++||+++...+.+.|.++.+ + .|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999988754 3 369999999999964 899999999999864
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=339.55 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=167.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
-|+++|++++| +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. ..|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999974 2489999999999999999999999999999999999999999999999999877654 34677
Q ss_pred eEEEecCCC---CCc-ccHHHHHhcC-----CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHH
Q psy5743 478 IGSVSQEPT---LFS-GTIYENILYG-----VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~---Lf~-gTIreNI~~g-----~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQk 547 (644)
++|++|++. +|. .|+.+|+.+. .+.....+..+..+. ..++++.+ |+.. ........||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHH-----HHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 555 5777663322 110000111221111 11222222 1210 12444568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||+.++|+||||||||++||+.+...+.+.|.++. .++|+|+|||+++.+ ..||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 478999999999988 4699999999999998887643
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=285.83 Aligned_cols=224 Identities=30% Similarity=0.452 Sum_probs=194.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+.+|. .+.+++++|++||+|+.++|+||+|+|||||+..+.|+.++++|+|.+||.++...+.+++.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 68999999996 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
..-|+..+-. -||||=+.||+=+++ .-|..-+.+|++-.++.+.-. -| =..||||||||--+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d----ry-------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD----RY-------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH----Hh-------HHhcccchhhhhhhh
Confidence 9999988765 699999999983221 123444667777777644322 22 236999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
-.+.+|.+.++||||..+||......+++.++++.+ +||+++|-|+..... .+|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~- 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP- 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-
Confidence 999999999999999999999999999999887654 899999999999985 5899999999999999999999964
Q ss_pred CcHHHHHHH
Q psy5743 631 NSMFNKLMK 639 (644)
Q Consensus 631 ~~~y~~l~~ 639 (644)
....+++.
T Consensus 227 -~~L~eiyd 234 (252)
T COG4604 227 -EILSEIYD 234 (252)
T ss_pred -HHHHHHhc
Confidence 45556553
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=319.42 Aligned_cols=212 Identities=31% Similarity=0.533 Sum_probs=175.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
.++++|++..||+ ..+++||||+|++||+.|+.|++|+|||||++.|.|+|+|++|+|++||++++--+|. ..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999983 5689999999999999999999999999999999999999999999999999977765 55666
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|.|.+.|++. |+.|||.+|.+.. ...+..+..+-++..+ ++ .|++-..-+.-..||-||+||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~-----~~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELS-----ER--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHH-----HH--hCCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999975 9999999998641 1123333322222211 11 13333333444569999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEe
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~ 620 (644)
|||++|++||||||||-|-+..-..+.+.++++. .++|+|+|||+|..++. ||++-||.+|+++..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 9999999999999999999998888889998875 58999999999999865 999999999998643
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=284.61 Aligned_cols=154 Identities=41% Similarity=0.670 Sum_probs=145.1
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
++|++|+|++ .++++++||++++|++++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999974 3699999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 482 ~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
+| |||||+||++||||+..+|+
T Consensus 79 ~q----------------------------------------------------------lS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 79 PQ----------------------------------------------------------LSGGQRQRVALARALLLNPD 100 (157)
T ss_pred ee----------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 99 99999999999999999999
Q ss_pred EEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 562 ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 562 IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
+++|||||++||.++...+.+.|.+..+ ++|++++||+++.+.. ||+|++|++|+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999988654 4899999999999988 59999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=344.64 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+|+|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999964 34689999999999999999999999999999999999999999999876 2479
Q ss_pred EEEecCCCCCcccHHHHHhcC----CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSGTIYENILYG----VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g----~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||++|++. ...++.+|..+. .+. .+++++.++++..++.+.. .......||||||||++|||
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAr 640 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAK 640 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHH
Confidence 99999873 233555664321 122 4577787788777764321 12335689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHL 626 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eL 626 (644)
|++.+|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 641 aL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 641 ITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999998775 3599999999999864 9999999999998 67887764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=365.25 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCC----------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccC
Q psy5743 399 EIDFNNIRFSYPSR----------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDI 466 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~----------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i 466 (644)
.++++||+|..+.. ....+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999998531 124699999999999999999999999999999999999874 789999999886
Q ss_pred CCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC--CCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDS--SSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~--~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
+ ...+|+.+|||+|++.++. .|++|||.|+..-. ...++++ +.++++..++. +-.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 4 3467788999999988776 59999998853100 1123332 45566665543 23578888655
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-
Q psy5743 540 -IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK- 614 (644)
Q Consensus 540 -~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~- 614 (644)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998875 47999999999984 578999999996
Q ss_pred CeEEEecChh
Q psy5743 615 GKIVEIGSYA 624 (644)
Q Consensus 615 G~ive~Gt~~ 624 (644)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=337.15 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 4999999999963 4699999999999999999999999999999999999999999999965 2 169
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEP-TLFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~-~Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|||+|++ .++. -|++||+.++..... ...+++..++++..++.+ .........||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 599999988642100 011233333444433311 01233445799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeC-CeEE-EecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDK-GKIV-EIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~-G~iv-e~Gt~~eLl~~ 629 (644)
++.+|++|||||||++||+.+...+.+.|.+. ..|+|+|||+++.+. .||+|++|++ |++. ..|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999887 359999999999875 4999999996 7887 47899887653
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=287.81 Aligned_cols=145 Identities=30% Similarity=0.403 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578999953 468888 4999999999999999999999999999999999999999995 378888
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I 562 (644)
|++. ||||||||++||||++.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 8542 999999999999999999999
Q ss_pred EEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 563 LLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 563 liLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
++|||||++||.++.+.+.+.+.+..+ ++|+|+|||+++.+. .||+|++|+++-.+
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999988753 389999999999987 59999999988665
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=340.52 Aligned_cols=200 Identities=22% Similarity=0.337 Sum_probs=166.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4999999999963 46999999999999999999999999999999999999999999999751 279
Q ss_pred EEEecCC--CCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEP--TLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~--~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||++|++ .+.. .|+.+|+....+. ..++++.+.++..++.+. .+......||||||||++||||
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~ 444 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQ---ELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALI 444 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCch---hhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999985 3443 4888887532221 334556666666554311 1222345799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEE-EecChhHHh
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV-EIGSYAHLI 627 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv-e~Gt~~eLl 627 (644)
++++|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+. .||+|++|++|+++ ..|++++..
T Consensus 445 l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 445 VWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999999887 459999999999985 59999999999997 789998874
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=339.95 Aligned_cols=203 Identities=26% Similarity=0.436 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999999 4332 69
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCCCCCCC--HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEP-TLFS-GTIYENILYGVNDSSSVT--KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~-~Lf~-gTIreNI~~g~~~~~~~~--~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||++|++ .++. .|+.||+.++.+.. ..+ ..++.+.++..++.+ ...++++ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEV-MVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccc-cccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHH
Confidence 9999986 3555 49999998864320 011 233333444333311 1123333 569999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe-CCeEEE-ecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD-KGKIVE-IGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~-~G~ive-~Gt~~eLl~ 628 (644)
|++.+|++|||||||++||..+...+.+.|.+. +.|+|+|||+++.+. .||+|++|+ +|++++ .|+|++-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999999886 569999999999885 599999998 899975 578887643
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=334.85 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 4999999999963 4699999999999999999999999999999999999999999999965 2 169
Q ss_pred EEEecCCC-CCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPT-LFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~-Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++. ++. -|++||+.++.+... ...+.+..++++..++ .. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNF-----------KGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCC-----------ChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 554 599999998743100 0112223333333333 21 123345679999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeC-CeEE-EecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDK-GKIV-EIGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~-G~iv-e~Gt~~eLl~ 628 (644)
|++.+|++|||||||++||..+...+.+.|.++ +.|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999999987 3599999999998864 999999997 5876 5688887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=284.00 Aligned_cols=156 Identities=27% Similarity=0.359 Sum_probs=129.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 467899999999999999999999999999999996 368999998852 222 2345888887
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSA 571 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSa 571 (644)
.++++..++.+ . ...+....||||||||++||||++++ |+++||||||++
T Consensus 68 ------------------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 ------------------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred ------------------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 12333333221 1 24567789999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999999998865 4899999999999999999999996643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=297.95 Aligned_cols=232 Identities=27% Similarity=0.411 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCC-CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~-~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~ 472 (644)
-++++|++..|.. +....++++|||+|++||++|+||+||||||--...++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788998877752 2356789999999999999999999999999999999999965 489999999999999999
Q ss_pred HHhc----ceEEEecCCCCC-c------ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 473 YLRS----QIGSVSQEPTLF-S------GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 473 ~lr~----~i~~V~Q~~~Lf-~------gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
.+|+ .|++++|+|.-= | .-|.|-|.+-+.-...+-.+++.+.++.+|+.+-=. .+..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 9887 699999999732 2 225555655432222355677888888888765211 22333468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||+.||-||..+|++||=||||.|||.....+|++.|+++.+ +..+++|||+|..++ .||+|+||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 789999999999995 59999999999999
Q ss_pred EecChhHHhcCCCcHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~ 638 (644)
|.|+-++|.+.+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999998888887664
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=331.25 Aligned_cols=194 Identities=25% Similarity=0.355 Sum_probs=162.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 169
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCCCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDSSSVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|+||++.+ ++.|++||+.++... .+ ...+.++++..++.+ .....-..||||||||++|||||
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDD---LGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACL 468 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhh---cChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHH
Confidence 999999875 567999999986322 22 233445555555432 22334457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
.++|++|||||||++||.++...+.+.|+++.+ ++|+|+|||++..+. .||+|++|+ |++...|+..
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999998753 789999999999875 599999996 4888777733
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=276.51 Aligned_cols=208 Identities=31% Similarity=0.428 Sum_probs=175.9
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC--CC-c
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LF-S 489 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf-~ 489 (644)
.++++|+++||+|+.|++|-|+|.+|+|||||++.+.|-+.|++|+|+|||+|+..++...-...++-|+|||- .+ +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999998889999999997 34 4
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
-||.||+.++..-...-.-.--...-+.....+.+..+|.|++-.++++-.-|||||||=++|+-|.++.|+||+|||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 69999999875321100011111122344445567889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCeEEEe
Q psy5743 570 SALDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~ 620 (644)
+||||.+...|++.=.+.- .+-|.++|||.++- +..-+|.++|++|+|+-.
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999888765543 36799999999986 577799999999999954
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=331.53 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=159.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999999842 489
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCC-----------HHHHHHHHH----------HHhhccchhhhhcCcc-ccccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVT-----------KSDIIHAAK----------EANAYGFVIDFKNGFD-TIVGE 537 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~-----------~~~i~~a~~----------~a~l~~~i~~lp~Gl~-T~ige 537 (644)
|++|++..+..|+.+++.-+.......+ ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 9999766566676666542110000000 000000000 00111112222 332 12233
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
.-..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+. .||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 45679999999999999999999999999999999999999999999876 579999999999985 589999999999
Q ss_pred EE-EecChhHHhc
Q psy5743 617 IV-EIGSYAHLIK 628 (644)
Q Consensus 617 iv-e~Gt~~eLl~ 628 (644)
++ ..|+|++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 97 4789887764
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=279.85 Aligned_cols=213 Identities=27% Similarity=0.389 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++||+++|. ++++|+|||++|+|||.-+|+||+|||||||++++.|.++|++|.+.+-|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999996 4689999999999999999999999999999999999999999999999999998888 999999
Q ss_pred eEEEec---CCCCCcccHHHHHhcCCCC-----CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 478 IGSVSQ---EPTLFSGTIYENILYGVND-----SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 478 i~~V~Q---~~~Lf~gTIreNI~~g~~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
||+|+- +.+.=+.+++|=+.-|.-+ ..+.++++..+|-...... |.....+..=..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~--------g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL--------GAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHc--------chhhhccCchhhcCHhHHHH
Confidence 999983 3333366777776633211 0135666555543333221 33333344456799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
+.|||||.++|++|||||||++||......+.+.+.++.. ..|+|+|||+.+.+ ...++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999988753 56899999999987 5679999999999998874
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=358.78 Aligned_cols=205 Identities=23% Similarity=0.264 Sum_probs=170.8
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC----CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY----DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS- 489 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~- 489 (644)
+++|+|+|+++++||.+||+||||||||||+|+|+|.. .|.+|+|.+||+++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 579999999999987654 346778999999998887
Q ss_pred ccHHHHHhcCCC----CC--CCCCHHHHH-----HHHHHHhhccchhhhhcCccccccC-CCCCCChhHHHHHHHHHHHc
Q psy5743 490 GTIYENILYGVN----DS--SSVTKSDII-----HAAKEANAYGFVIDFKNGFDTIVGE-RGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 490 gTIreNI~~g~~----~~--~~~~~~~i~-----~a~~~a~l~~~i~~lp~Gl~T~ige-~G~~LSGGQkQRiaLARAll 557 (644)
-|++||+.|+.. .. ...++++.. ++++..+ |.+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG-------LSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcC-------cccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 599999998621 00 012333322 2333333 34457889986 46789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch-H-HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-T-IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~-~-i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . ...+|+|++|++|+++..|+.+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999763 789999999974 3 4679999999999999999998873
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=266.68 Aligned_cols=217 Identities=28% Similarity=0.461 Sum_probs=177.8
Q ss_pred EEEEEEE--EEcCC----CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIR--FSYPS----RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vs--f~Y~~----~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++++|+| |.|.. +....+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||+++.-=|...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566664 44421 12335789999999999999999999999999999999999999999999999999888888
Q ss_pred HhcceEEEecCCC-----------CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 474 LRSQIGSVSQEPT-----------LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 474 lr~~i~~V~Q~~~-----------Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
-.++|-+++|||. +.++.++-|-.+.. +.-.+++.+.++.+|+. |+--+.. -..|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~----~~R~~~i~~TL~~VGL~------Pdhan~~----~~~l 150 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP----EQRRKQIFETLRMVGLL------PDHANYY----PHML 150 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCCh----HHHHHHHHHHHHHhccC------ccccccc----hhhc
Confidence 8889999999974 33444444443332 24567899999999985 3322222 3579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive 619 (644)
|-|||||+||||||.-+|+|+|-|||..+||..-..++.+...++. .|..-|.|+.++-.+++ +|+|+||++|+++|
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE 230 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence 9999999999999999999999999999999998888887775543 37899999999999976 89999999999999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|...+++..+
T Consensus 231 ~G~t~~v~a~P 241 (267)
T COG4167 231 RGSTADVLASP 241 (267)
T ss_pred cCChhhhhcCC
Confidence 99999998754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=326.57 Aligned_cols=209 Identities=27% Similarity=0.463 Sum_probs=158.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998731 367
Q ss_pred EEecCCCC-CcccHHHHHhcCCCC---------------CCCCCHHHHHHHHH-------------HHhhccchhhhhcC
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVND---------------SSSVTKSDIIHAAK-------------EANAYGFVIDFKNG 530 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~---------------~~~~~~~~i~~a~~-------------~a~l~~~i~~lp~G 530 (644)
+++|++.. ..+++.+++..+... .....++.+..... ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887642 236677765322100 00000111110000 00111112221 2
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEE
Q psy5743 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQI 609 (644)
Q Consensus 531 l~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~I 609 (644)
+. ....-..||||||||++|||||+.+|+||||||||++||.++...+.+.|.++ +.|+|+|||++..+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 13344679999999999999999999999999999999999999999999887 4699999999999864 9999
Q ss_pred EEEeCCeEEE-ecChhHHhc
Q psy5743 610 CVLDKGKIVE-IGSYAHLIK 628 (644)
Q Consensus 610 ivl~~G~ive-~Gt~~eLl~ 628 (644)
++|++|+++. .|+|++.++
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999984 699988765
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=354.40 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=170.2
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHhcceEEEecCCCCCc-c
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 490 (644)
..+|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+... |+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999876643 778999999988776 5
Q ss_pred cHHHHHhcCCCCC---C------CCCH----------HHH---HHHHHHHh------hccchh--hhhcCccccccCC-C
Q psy5743 491 TIYENILYGVNDS---S------SVTK----------SDI---IHAAKEAN------AYGFVI--DFKNGFDTIVGER-G 539 (644)
Q Consensus 491 TIreNI~~g~~~~---~------~~~~----------~~i---~~a~~~a~------l~~~i~--~lp~Gl~T~ige~-G 539 (644)
|++||+.|+..-. . +.+. +++ .+++...+ .++.++ .|.+-.||.||+. -
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999852100 0 0111 111 11111111 111222 2455568999864 4
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCc--hHHhhcCEEEEEeCC
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRL--STIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl--~~i~~aD~Iivl~~G 615 (644)
.+||||||||++||||++.+|++++|||||++||+.+...+.+.|+++.+ ++|+|+++|++ +....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 68999999999999999999999999999999999999999999999753 78999999997 456889999999999
Q ss_pred eEEEecChhHHh
Q psy5743 616 KIVEIGSYAHLI 627 (644)
Q Consensus 616 ~ive~Gt~~eLl 627 (644)
+++..|+.++++
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=253.31 Aligned_cols=198 Identities=24% Similarity=0.403 Sum_probs=166.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr 475 (644)
-+.++||+.+-++ ...|.|+|++|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..+... +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 3678999988864 47899999999999999999999999999999999999985 89999999999988754 6
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++|+..||++||. -++-+||.|.-|..- ++.+.....|++..+++++..+-| .+||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 89999999999997 599999999987521 233445667888888888777666 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHHhhcCEEEEE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~--~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
-|+|+.+|+.++||||+|.||..-...+.+-.... ..+.-+|.|||+++-+..-.+|+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999998666555554321 2378899999999988865555544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.26 Aligned_cols=193 Identities=24% Similarity=0.324 Sum_probs=159.2
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccCCCCCh
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-----------IDGVDIKELDP 471 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~ 471 (644)
++++.+|++ ...+|++++ ++++||+++|+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 458999964 246899999 9999999999999999999999999999999999998 99999876532
Q ss_pred HH--Hhcc----eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 MY--LRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~~--lr~~----i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+- .+.. +.+++|.|.+|.+|++||+... ..++++.++++..++.+. .++. -.+||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------~~~~~~~~~l~~l~l~~~-------~~~~----~~~LSgG 216 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------DERGKLDEVVERLGLENI-------LDRD----ISELSGG 216 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh------hHHHHHHHHHHHcCCchh-------hcCC----hhhCCHH
Confidence 21 1123 4456667788899999999753 124566677777665332 2333 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G 615 (644)
||||++||||++++|++||||||||+||..+...+.+.|+++.+++|+|+|+|+++.+. .||+|++|++|
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998866899999999999985 48999999873
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=268.76 Aligned_cols=501 Identities=19% Similarity=0.252 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 165 (644)
+.+.-+.+++.++-+=++++..++..+..++...+.-|.++ .+-..+.+-.-.|+..+.+-.+..++....|+..+
T Consensus 126 ~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~li----aiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~ 201 (728)
T KOG0064|consen 126 FLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLI----AIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYL 201 (728)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666777777888877766554443333222221 22223333333455555566666666666666666
Q ss_pred cCChhhhhccC-hhH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHH
Q psy5743 166 SQETAYFDKHK-TGE---LINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA--LISLI--IVPPVAGL 237 (644)
Q Consensus 166 ~~~~~~~~~~~-~G~---i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~--li~l~--~~~l~~~~ 237 (644)
... .||.-.+ -|. .=++++.|+..+.+...+...++.--++-+++....+.-.+...+ .+.++ ...+-.-+
T Consensus 202 snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~i 280 (728)
T KOG0064|consen 202 SNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFI 280 (728)
T ss_pred ccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHH
Confidence 554 4443322 122 225677887776665555444433323322222222221111111 11111 11111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNA 317 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (644)
.+.+..++-++..+.......+...=+..+.|-++|-.|+-.+.+.++..+..+..........+.+.++.-+.++++--
T Consensus 281 Lr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKY 360 (728)
T KOG0064|consen 281 LRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKY 360 (728)
T ss_pred HHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666667788999999999999999999999888887766655555555555444443210
Q ss_pred HHHHHHHHHHHH------------HHcCCcC---Hh--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 318 IILSVLYYGGVM------------VSYETIT---VG--NLSSFLL---YAAYIGISIGGLSNFYSELNKGLGACHRLWEI 377 (644)
Q Consensus 318 ~~~~vl~~g~~~------------v~~g~~t---~g--~l~a~~~---~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~ 377 (644)
.|-|+-+ ...+... .| ..-.|.. +.......+..+...+.++++-...-.|+.+.
T Consensus 361 -----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~m 435 (728)
T KOG0064|consen 361 -----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTM 435 (728)
T ss_pred -----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111111 1122211 01 1222222 23334455666777777777666677788755
Q ss_pred Hhc----------C---CCccCCC--------CCccC---CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEE
Q psy5743 378 MER----------E---PLISTSG--------GKFFS---HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSV 433 (644)
Q Consensus 378 l~~----------~---~~~~~~~--------~~~~~---~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaI 433 (644)
++- . ++..+.. .+.+. ......|.++||-.--|. ...+..++||+|++|-.+.|
T Consensus 436 f~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLI 513 (728)
T KOG0064|consen 436 FSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA--GDVLVPKLTFQIEPGMHLLI 513 (728)
T ss_pred HHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC--cceeecceeEEecCCceEEE
Confidence 431 0 0100000 00000 012235999999888775 34688999999999999999
Q ss_pred ECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC----CCCCCHH
Q psy5743 434 IGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND----SSSVTKS 509 (644)
Q Consensus 434 vG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~----~~~~~~~ 509 (644)
.||+|||||+|.+.|.|++|...|...+-- +.++-|+||.|+.=-||+||-|-|-+.- ....+|.
T Consensus 514 tGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~ 582 (728)
T KOG0064|consen 514 TGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQ 582 (728)
T ss_pred ECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHH
Confidence 999999999999999999999988887643 2369999999999999999999985421 1247899
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
++.+.+..+.++- |.+-..|+|.. -+=-.-||||+|||++.||.+|++|+.-+|||+|||+-.+-|..+.++.++.
T Consensus 583 dL~~iL~~v~L~~-i~qr~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~-- 658 (728)
T KOG0064|consen 583 DLEAILDIVHLEH-ILQREGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA-- 658 (728)
T ss_pred HHHHHHHHhhHHH-HHHhccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--
Confidence 9999999999864 44545666653 3334569999999999999999999999999999999999999999999887
Q ss_pred CceEEEEccCchHHhhcCEEEEEe
Q psy5743 590 GKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 590 ~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
+.+.|-||||++..+.-...+-.+
T Consensus 659 gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 659 GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred CceEEEeecCccHHHHHHHHHhcc
Confidence 899999999999998877777763
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.89 Aligned_cols=220 Identities=29% Similarity=0.437 Sum_probs=186.9
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC---CCcEEEECCccCCCCChH
Q psy5743 398 GEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~ 472 (644)
..++++|+++.-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|-.++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 3589999999987642 47899999999999999999999999999999999999975 799999999 556778
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCC--CCHHH----HHHHHHHHhhccchhhhhcCccccccC-CCCCCCh
Q psy5743 473 YLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSS--VTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGE-RGIMLSG 544 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~--~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige-~G~~LSG 544 (644)
.+++.+|||+||+.++. -||+|++.|...-..+ .+.++ +++..+.-++. +=-||.||. ++.++||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCcccc
Confidence 89999999999999886 5999999987532111 23333 34444444432 236788985 4468999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~G~ive~G 621 (644)
|||+|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999875 58999999999985 5889999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+.+++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=260.08 Aligned_cols=217 Identities=29% Similarity=0.414 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHHhc-
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYLRS- 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr~- 476 (644)
++++|++.+-.++ +.+|+++||+|++||+.||-||+|||||||.+.|+|. |++++|+|.+||.||.++++++-.+
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 7899999988532 4899999999999999999999999999999999997 5899999999999999999988744
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCC------CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSS------VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
-|....|.|.=+.| |+.+=+..+.+.... ...+++.++++..++++. =++..|++ .+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~------~l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE------FLERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH------HhhcccCC---CcCcchHHH
Confidence 59999999999988 677776654332111 235667777777777652 13444554 599999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc--CEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS--NQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a--D~Iivl~~G~ive~Gt~~eL 626 (644)
.-|+.+++-+|++.|||||=|+||.++-+.|.+.+.++. ++.++++|||.-..+... |++.||-+|+|+.+|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998875 478999999999998876 99999999999999999 77
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 64
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=303.60 Aligned_cols=206 Identities=30% Similarity=0.504 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|+ ++++|+|+||++.+|++++|||++|||||||+|+|.|...|++|+|...+.- ++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-----------~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-----------RV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-----------eE
Confidence 489999999995 4689999999999999999999999999999999999999999999988721 69
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHh----------------------h---ccchhhhhcCc-
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEAN----------------------A---YGFVIDFKNGF- 531 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~----------------------l---~~~i~~lp~Gl- 531 (644)
+|++|++...++ |++|.+..+..+ ..++.+..+... . ...+...=.|+
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGE-----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHH-----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 999999999975 999999887532 111111111110 0 01111111122
Q ss_pred ----cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 532 ----DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 532 ----~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
++++ .+||||||-|++|||||+.+||+|+|||||++||.++-..+.+.|.+. ++ |+|+|||+-.++.. |
T Consensus 144 ~~~~~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 144 FPDEDRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred CCcccCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHh
Confidence 3444 469999999999999999999999999999999999999999999865 45 99999999999955 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhcC
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
++|+.++.|++. ..|+|+.-++.
T Consensus 218 t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 218 THILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred hheEEecCCceeEecCCHHHHHHH
Confidence 999999999876 67898887653
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=261.37 Aligned_cols=136 Identities=45% Similarity=0.702 Sum_probs=126.8
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCccc-HHHHH
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT-IYENI 496 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT-IreNI 496 (644)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.+||.++...+...+|+.++|++|++.+|.+. ++||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999876 99991
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS 570 (644)
.++++.++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 81 ----------~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 ----------SDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------HHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------cccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3677888888888754 46788888899999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=318.17 Aligned_cols=223 Identities=24% Similarity=0.276 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC---CCCCcEEEECCccCCCCC--h--
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY---DPQNGKILIDGVDIKELD--P-- 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~idg~~i~~~~--~-- 471 (644)
.|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++..-+ .
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999963 35999999999999999999999999999999999864 588999986555432111 1
Q ss_pred ----------HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccc------hhhhh--c
Q psy5743 472 ----------MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGF------VIDFK--N 529 (644)
Q Consensus 472 ----------~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~------i~~lp--~ 529 (644)
..+++.+++++|++.+...+..+|...... ...+. +++.++++..++.+. +..+- -
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK--DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc--cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 123556899999887655566566532111 01122 344444444443221 11110 1
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cC
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SN 607 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD 607 (644)
|++. .....-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 2221 112233579999999999999999999999999999999999999999999887 7899999999999866 99
Q ss_pred EEEEEeCCeEE-EecChhHHhc
Q psy5743 608 QICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 608 ~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
+|++|++|+++ ..|++++..+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6788876654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=254.16 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC-ccCCCCChHHHhc-
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-VDIKELDPMYLRS- 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg-~~i~~~~~~~lr~- 476 (644)
.++++||+.++++ -.+|+|+||+|.|||.-+|+||+|+||||++.++.|..+|+.|+++++| .|+..++...+.+
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999975 3589999999999999999999999999999999999999999999999 9999999888755
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
-||-=+|.|..|.. |++||+-+.....+ ....+++.+.+...++.+. .......||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 59999999999975 99999987654311 1223356666666665443 3344578999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecCh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~ 623 (644)
||||++-|+--+.++|++|+||||++++-.+.....-+.|+.+...+++++|-|++..++. ||+|-||..|.|...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999555555667788888889999999999999954 999999999999999999
Q ss_pred hHHhcC
Q psy5743 624 AHLIKN 629 (644)
Q Consensus 624 ~eLl~~ 629 (644)
+|+-.+
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-32 Score=260.09 Aligned_cols=191 Identities=27% Similarity=0.343 Sum_probs=158.9
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC--ccc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF--SGT 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf--~gT 491 (644)
+.++|+||||++.+||.++|||++|||||||+|+|.|.|+|++|+|.++| .++.+---..=| +-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 45799999999999999999999999999999999999999999999999 555443333323 458
Q ss_pred HHHHHhcCCCC---CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 492 IYENILYGVND---SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 492 IreNI~~g~~~---~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
-||||.+-.-- ....-++.+.+..+-+.|.+|+. .|| .+.|-|.+-||+.|=|.--+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 99999753210 01123555666778888887753 333 57999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 569 TSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.|..|+.=.++-.+.+.++ .+++|+|+|||+++.++ .||++++|++|+|...|+.+|.++
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999777777778777 67899999999999995 499999999999999999999984
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=260.33 Aligned_cols=214 Identities=25% Similarity=0.456 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+++++|+-+|+ +..+++||||+++||+..+++|++|+||||.+++|+|+++|++|+|.++|.+++.- .+++|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 478999999996 46799999999999999999999999999999999999999999999999998764 56699
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhc-CccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN-GFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~-Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
||.|.+--|+. -|+.|-|.|...- .....+|+.+ .+..|++++.- |+ -.+.-..||-|-.|.|.+--|+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~L-kGm~~~e~~~-----~~~~wLer~~i~~~---~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAEL-KGMPKAEIQK-----KLQAWLERLEIVGK---KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHh-cCCcHHHHHH-----HHHHHHHhcccccc---ccchHHHhhhhhhHHHHHHHHH
Confidence 99999999996 6899999987532 2244444432 22344554321 22 2344467999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|+++|||||+|+||+-+.+.+.+.+.++. .+.|+|+-|||++-+ +-||+++.|++|+.|-+|+-++..+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999998875 589999999999998 5599999999999999999888754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=287.01 Aligned_cols=202 Identities=28% Similarity=0.456 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++++|++++|+++ +++++++||.|.+|++||||||+|+|||||+|+|+|...|.+|+|.++-. -++
T Consensus 321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 48999999999753 68999999999999999999999999999999999999999999998762 269
Q ss_pred EEEecCC-CCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEP-TLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~-~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
||.+|+- .++ +.|+-|++.-+.|+ ..+.++...+...++...- ..++| ..||||||-|+.||+.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~---~~e~~~r~~L~~f~F~~~~------~~~~v----~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD---GDEQEVRAYLGRFGFTGED------QEKPV----GVLSGGEKARLLLAKLL 454 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc---ccHHHHHHHHHHcCCChHH------HhCch----hhcCHhHHHHHHHHHHh
Confidence 9999987 344 44899999877654 4478888888888775432 23344 46999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEe-cChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI-GSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~-Gt~~eLl~~ 629 (644)
+.+|.+|||||||.+||.++-..+.++|.+. +-|+|+|||+...+.. |++|+.+++ ++.+. |+|++-.+.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999999987 6799999999999955 899999998 77766 888887653
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=247.38 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++.+|++..- .+..++.++||++.+||.+-|+||+|||||||+++|.|+++|++|+|+++|.+++... +++++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 3456666554 3568999999999999999999999999999999999999999999999999988754 44577889
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|+...+-+=. -|+.||+.|...-....+++.+++|++.+++.++ +++| + .+||-||+.|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 9988777654 6999999998763222568999999999999875 4444 3 3699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHH-HcCCceEEEEccCchHHhh
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEK-LIEGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~-~~~~~TvI~IaHrl~~i~~ 605 (644)
.+|++||||||++||.+++..+...+.. ..++-.||.-||.+-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 9999999999999999999999888865 4467899999999876654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=238.42 Aligned_cols=229 Identities=22% Similarity=0.395 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC-----ccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-----VDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg-----~~i~~~~~~~ 473 (644)
-++++++|-.|.+. .-.+||||++-|||..+|||+||||||||+++|.+-+.|++|+|.++. .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37889999999743 468999999999999999999999999999999999999999999976 4444555444
Q ss_pred H----hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHH------HHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 474 L----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA------KEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 474 l----r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~------~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
- |.--|+|.|+|. |-+.+.-....++ -|++...- -.+...+|+++..- ..+.|.+....+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~Ni-GERlma~G~RHYG~iR~~a~~WL~~VEI-~~~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNI-GERLMAIGARHYGNIRAEAQDWLEEVEI-DLDRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCcc-chhHHhhhhhhhhhHHHHHHHHHHhccc-CcccccCcccccc
Confidence 3 445899999985 2222221110001 11111110 01112344444321 2356778889999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||.+||+.|||-|...|+++++||||-+||..-.+.+.+.++.+.. +-.+|+|||++...+ -||+.+||++|+++|+
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987654 569999999999885 4999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~ 639 (644)
|--+..+..+.-.|.++.-
T Consensus 234 GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccccCCCCchHHHHH
Confidence 9999999887788888753
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=263.70 Aligned_cols=192 Identities=24% Similarity=0.310 Sum_probs=127.3
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHH-HHHhccCCCCCcEEEEC-C------ccCCCCC-h--HHHhc-ceEEE
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA-MLLLRLYDPQNGKILID-G------VDIKELD-P--MYLRS-QIGSV 481 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~id-g------~~i~~~~-~--~~lr~-~i~~V 481 (644)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+. + ...+. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 13433221 0 1111110 1 11111 23344
Q ss_pred ecCCC-CCc-----ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHHHHHH
Q psy5743 482 SQEPT-LFS-----GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 482 ~Q~~~-Lf~-----gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRiaLAR 554 (644)
.|++. .++ +++.+...+...-....+.++..+.++.. |+.. ........||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV-----------GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC-----------CCCcccccCccCcCCHHHHHHHHHHH
Confidence 44433 111 12222221110000000111112222222 3332 245667789999999999999
Q ss_pred HHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCeEEEec
Q psy5743 555 ALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------DKGKIVEIG 621 (644)
Q Consensus 555 All~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~~G~ive~G 621 (644)
|++++| +++||||||++||+.+...+.+.|.++. .+.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999999999999999998864 478999999999999999999999 999999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=266.27 Aligned_cols=194 Identities=29% Similarity=0.417 Sum_probs=145.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c-cC----CCCCc-----------EEEECCccCCCCChHH-
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-----R-LY----DPQNG-----------KILIDGVDIKELDPMY- 473 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-----g-~~----~p~~G-----------~I~idg~~i~~~~~~~- 473 (644)
..|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ -|.||..+|..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3599999999999999999999999999998663 1 11 13222 4677777765432211
Q ss_pred ---------Hhc----------------ceEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh
Q psy5743 474 ---------LRS----------------QIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 474 ---------lr~----------------~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l 527 (644)
+|+ .+.|..++.. +.+-|+.||+.|.... ...++..++++..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~---~~~~~~~~~L~~v--------- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI---PKIARKLQTLCDV--------- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh---hhHHHHHHHHHHc---------
Confidence 111 1334444444 3455888888776431 1122333333333
Q ss_pred hcCccc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q psy5743 528 KNGFDT-IVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST 602 (644)
Q Consensus 528 p~Gl~T-~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~ 602 (644)
|++. ..++....|||||+||++|||||.++ |+++||||||++||+++...+.+.|.++. ++.|+|+|+|+++.
T Consensus 157 --gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 157 --GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred --CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4444 36788899999999999999999996 79999999999999999999999998875 47899999999999
Q ss_pred HhhcCEEEEE------eCCeEEEecCh
Q psy5743 603 IRKSNQICVL------DKGKIVEIGSY 623 (644)
Q Consensus 603 i~~aD~Iivl------~~G~ive~Gt~ 623 (644)
++.||+|++| ++|+|+++|++
T Consensus 235 i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=253.31 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=135.3
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---------CcEEEECCccCCCCChHHHhcceEEEecCCCCCc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---------NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS 489 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---------~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~ 489 (644)
+++++++++| +++|+||||||||||+++|.|+.+|. .|++.++|.++... ..++++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 99999999999999999999998665 34788888877542 2467899999999988
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEe
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI----KKSKILLL 565 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll----~~p~IliL 565 (644)
|+. ...+++.++++. ++-.+ .....||||||||++||||+. ++|++++|
T Consensus 89 --------~~~-----~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI-----ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE-----EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 331 124455555555 11123 334579999999999999985 57799999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 566 DEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||++||+++...+.+.|+++.++.|+|+|||+++.+..||+++.|..
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999999998778999999999999999999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=251.24 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=159.1
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe-cCCCCC-----c
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS-QEPTLF-----S 489 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q~~~Lf-----~ 489 (644)
++.+||||+||||+.++.+|++|+||||++|+|.|+..|++|.|.++|.+--. +.+++-+++++|+ |...+. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 57899999999999999999999999999999999999999999999988766 4445555666554 332211 1
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
.|++=|=..- ++.+++..+-.. ++++-| +++..+-..-..||=|||-|.-||-||+++|+||+|||||
T Consensus 117 ds~~v~~~Iy-----~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 117 DSLEVLKLIY-----EIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred hhHHHHHHHH-----hCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 2222221111 133444332211 112212 4566666777899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 570 SALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
=+||......|.+.+++.. .+.||++.||.++-+ .-||||+.|++|+++..||.++|.+. -|.|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~-f~~~k 252 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYK 252 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH-hCCce
Confidence 9999999999999997753 478999999999987 66999999999999999999999764 34343
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=252.14 Aligned_cols=192 Identities=25% Similarity=0.310 Sum_probs=141.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc----------------CCCCCc-----
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----------------YDPQNG----- 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----------------~~p~~G----- 457 (644)
.|+++|. .+|. +..++.+++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3566654 1253 235677776 899999999999999999999844 444455
Q ss_pred ---EEEECCccCCCC---ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchh--hhhc
Q psy5743 458 ---KILIDGVDIKEL---DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFKN 529 (644)
Q Consensus 458 ---~I~idg~~i~~~---~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~--~lp~ 529 (644)
+|.+++.+-... +...+++++++++|++.++. . ..+.++++.+++..++...-. .+|+
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~---~~t~~ei~~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------K---NVTKNDVMNLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------e---EcCHHHHHHHHHHcCCCCCCCcEEEEc
Confidence 555555322111 12235566777777665533 1 256788888888877654211 1233
Q ss_pred Ccc-------ccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 530 GFD-------TIVGERGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 530 Gl~-------T~ige~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
|.. ....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|.++.++.|+|+++|
T Consensus 140 g~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h 219 (243)
T cd03272 140 GKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTF 219 (243)
T ss_pred CchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 432 2345788899999999999999996 46899999999999999999999999999877889999999
Q ss_pred CchHHhhcCEEEEEe
Q psy5743 599 RLSTIRKSNQICVLD 613 (644)
Q Consensus 599 rl~~i~~aD~Iivl~ 613 (644)
+.+..+.||+|++|+
T Consensus 220 ~~~~~~~~d~i~~l~ 234 (243)
T cd03272 220 RPELLEVADKFYGVK 234 (243)
T ss_pred CHHHHhhCCEEEEEE
Confidence 999999999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=227.71 Aligned_cols=273 Identities=26% Similarity=0.442 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 81 TGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERL 160 (644)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 160 (644)
+.+++++++..++.++.|++++.++|.+...... .......+.++++++.++.........+...+.+.++..++|.++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888899999999999986554332 122333333344444455555666666778899999999999999
Q ss_pred HHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 161 FGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240 (644)
Q Consensus 161 ~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 240 (644)
++|+++.|.++|+++++|++++|+++|++.+++.+...+...+.+++.+++.++++++++|.++++.+++.+++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIIL 320 (644)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (644)
+.|+.++..++..+..++..+.+.|.++|+++||+||+|+++.++|.+..++..+...+.............++..+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHH-HHcCCcCHhHHHHHHHHHHHHHHHH
Q psy5743 321 SVLYYGGVM-VSYETITVGNLSSFLLYAAYIGISI 354 (644)
Q Consensus 321 ~vl~~g~~~-v~~g~~t~g~l~a~~~~~~~~~~~l 354 (644)
+++++|+++ +.+|.+++|.++++..+...+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 999999999 9999999999999999999998885
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=248.37 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=147.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEe-CCCEEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQ-SGSMTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.|+++|+. +|.+. .+|+|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 77532 46777654 599999999999999999999994 666776766654 3334555566677
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC-ccccccCCCCCCChhHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG-FDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G-l~T~ige~G~~LSGGQkQRiaLARA 555 (644)
.|++++|++.- ...++.++. .+.++..+... ++.| +++.+...+.+||||||||++||||
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~g-----l~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~a 137 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSRG-----LDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLA 137 (213)
T ss_pred EEEEEEEECCe----EEEEEEecC-----CCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHH
Confidence 89999999843 223333331 45555544331 2223 5666778888999999999999999
Q ss_pred Hcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 556 LIK----------KSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 556 ll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
+.. +|+++||||||++||+.+...+.+.+.++.+ ++|+|+|||+++.+.. ||+|++|++|.+
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 974 6799999999999999999999999988765 7899999999998754 799999999864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=223.66 Aligned_cols=203 Identities=29% Similarity=0.420 Sum_probs=147.9
Q ss_pred EEEEEEEEEcC----CCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC----ccCCCCCh
Q psy5743 400 IDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG----VDIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~----~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg----~~i~~~~~ 471 (644)
+.++|++.++. +.-.-|+++|+||+++.||++++-||||||||||++.|-+-|.|++|+|.+.- .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 67777755542 11234799999999999999999999999999999999999999999999842 45555555
Q ss_pred HHH----hcceEEEecCCCCCc-----ccHHHH-HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 472 MYL----RSQIGSVSQEPTLFS-----GTIYEN-ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 472 ~~l----r~~i~~V~Q~~~Lf~-----gTIreN-I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
.+. |+.||||+|--.... +-+.|- +..|-|. +...++....+...++-+.+=+|| ...
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~--~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR--EVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH--HHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 443 556999999532221 112232 2233221 011122222333344433333333 468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
+|||++||+-|||++.-|-+||+|||||++||+.+.+.+.+.|.+. .++..+|=|=|+-+.- .-|||++.|..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999775 4688999999998765 34899998854
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=242.74 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=142.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCc-cCCCCC--hHHHhcceEEEecCCCC----------CcccHH
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGV-DIKELD--PMYLRSQIGSVSQEPTL----------FSGTIY 493 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~-~i~~~~--~~~lr~~i~~V~Q~~~L----------f~gTIr 493 (644)
..+++||||||||||||+++|.+++.|+ .|+++..|. |+-..+ ....+..+++++|++.. -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568988887 442211 11234589999999632 145888
Q ss_pred HHHhcCCCC-----CCCCCHHHHHHHHHHHhhc----cc------hhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-
Q psy5743 494 ENILYGVND-----SSSVTKSDIIHAAKEANAY----GF------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI- 557 (644)
Q Consensus 494 eNI~~g~~~-----~~~~~~~~i~~a~~~a~l~----~~------i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll- 557 (644)
+||..+... ......+++.++++.+++. .+ |.++-+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 888765321 1124567888889988874 11 1111000 12234556789999999999999997
Q ss_pred ---cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 558 ---KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 558 ---~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
++|++++|||||++||+++...+.+.|.++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=260.61 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=185.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC-ChHHHhc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL-DPMYLRS 476 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~-~~~~lr~ 476 (644)
..+..+|++..|+... . +.+++|+.|++||+.++-|++||||||.+|++.|..+|++|++.++|.++..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998642 2 89999999999999999999999999999999999999999999999999764 5556999
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+||++.|+. -|.||.+.+..-- ......+ +.+.++..++.+. .+++ -.++|||+|.|++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arl-rG~~~~di~~~v~~ll~~~~L~~~-------~~~~----~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARL-RGLPRSDIGSAIEKLLRLVGLGPY-------ANKQ----VRTYSGGNKRRLS 708 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHH-cCCChhHHHHHHHHHHHHcCChhh-------hccc----hhhCCCcchhhHH
Confidence 9999999999997 4999999875421 1122222 4555666665443 4444 3589999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|-|++.+|++++|||||+++|+.+++.+.+.|.+..++. .+|+.||.++... -|||+-.|-+|++..-|+.++|-.
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999987754 9999999999985 499999999999999999999953
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=231.67 Aligned_cols=162 Identities=24% Similarity=0.284 Sum_probs=130.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh----ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC-----CCCcc-c
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLL----RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP-----TLFSG-T 491 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~----g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-----~Lf~g-T 491 (644)
++++.+| +++|+||||||||||++.|. |...|.+|.+..+...+ .....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3556677 99999999999999999994 99999888776222222 2234566899999998 34332 9
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH------HHHHHHHccCCCEEEe
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR------IAIARALIKKSKILLL 565 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR------iaLARAll~~p~IliL 565 (644)
+.||+.++. .+++.+.+ .+....|||||+|| ++||||+..+|++++|
T Consensus 93 ~~~~~~~~~-------~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH-------QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec-------hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 999998752 23332222 45567899999996 7999999999999999
Q ss_pred ecccCCCCHHHHH-HHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 566 DEATSALDAENEY-LVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 566 DEaTSaLD~~~e~-~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||++||+++.. .+.+.|.++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999998 99999988765 6899999999999999999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-27 Score=249.88 Aligned_cols=199 Identities=25% Similarity=0.345 Sum_probs=168.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.-|.++||+|.|+++ +.+++++||-|.+++.||+|||+|+|||||+|++.|.+.|+.|.|.-.-+. .
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 359999999999863 489999999999999999999999999999999999999999999865533 3
Q ss_pred eEEEec---CCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQ---EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q---~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+++-.| +..-++.|.-|++.---++ .-..+++...+...|+.......|. .+||+|||.||+.||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~ 522 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFAR 522 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc--cchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHH
Confidence 444444 3446677888888744342 2457788889999999877665554 479999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEE-ecCh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE-IGSY 623 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive-~Gt~ 623 (644)
..+++|.||+|||||++||.++-....++|.+. +-+||+|+|+...|.+ |++|.+.+||++.. .|.+
T Consensus 523 l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 523 LAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999987 6799999999999965 89999999998863 3443
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=269.52 Aligned_cols=111 Identities=32% Similarity=0.506 Sum_probs=98.2
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|++. ..+.....||||||||++|||||.++| +++||||||++||.++...+.+.|.++. +++|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 468888999999999999999999999 9999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
.||+|++| ++|+|++.|+++++.+.+.+.-.+.++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 99999999 7999999999999997655555555543
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-27 Score=216.90 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=177.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+..- -|-.+|.++..||.+=+|||+|||||||+..|.|+. |-+|+|.++|.|++.++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667775421 266789999999999999999999999999999998 78899999999999999999999999
Q ss_pred EEecCC-CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEP-TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~-~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|.+|+. ..|...+..-+++..|+ +.--+++.+++++.+++ -.+|..-..|||||.||+-||-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~--~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD--KTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch--HHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEE
Confidence 998754 58999999999999875 22334555556655544 44566678999999999999998874
Q ss_pred -----C--CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 -----K--SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 -----~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
| .++|++|||-+.||...+..+...|.++. .+.|+|+-.|++. |+++||+++.+..|++..+|..+|.+..
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 37999999999999999988888887765 5899999999986 8999999999999999999999999853
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=273.25 Aligned_cols=215 Identities=23% Similarity=0.313 Sum_probs=157.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHH---------HHhccCCCCCc--------EEEE
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAM---------LLLRLYDPQNG--------KILI 461 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~---------lL~g~~~p~~G--------~I~i 461 (644)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...|..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888852 2699999999999999999999999999999 55665433211 2456
Q ss_pred CCccCCCCCh----------HHHh---------cceE-----EEecC------------------C--------------
Q psy5743 462 DGVDIKELDP----------MYLR---------SQIG-----SVSQE------------------P-------------- 485 (644)
Q Consensus 462 dg~~i~~~~~----------~~lr---------~~i~-----~V~Q~------------------~-------------- 485 (644)
|-.++..-.. +++| +..+ +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 6665543221 1344 1111 12221 1
Q ss_pred ------CCCc-ccHHHHHhcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHH
Q psy5743 486 ------TLFS-GTIYENILYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 486 ------~Lf~-gTIreNI~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARA 555 (644)
..+. -||.||+.++..+... .+.+++.+.++ .++. .|++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1222 3799999887432100 11233333332 1222 266664 688889999999999999999
Q ss_pred Hc---cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEe------CCeEEEecChhH
Q psy5743 556 LI---KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLD------KGKIVEIGSYAH 625 (644)
Q Consensus 556 ll---~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~------~G~ive~Gt~~e 625 (644)
|. ++|++|||||||++||.++.+.+.+.|.++. +++|+|+|+|+++.++.||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 4789999999999999999999996 799999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9763
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-27 Score=231.97 Aligned_cols=185 Identities=17% Similarity=0.251 Sum_probs=140.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
.|+++|.- +|. +..+++++++ ++++|+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47788875 674 3468898887 899999999999999999997 33554432 233 57
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHH-----HHHHHH----HhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI-----IHAAKE----ANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i-----~~a~~~----a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+++++|+..+++. |.++++.+.... ...+.+ ...... .+-...+.+||++.++.++ .||||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~ 133 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEI---IDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEK 133 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeC---CCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHH
Confidence 9999999887764 778877776421 111100 000000 0111234567888877654 7999999
Q ss_pred HHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 548 QRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 548 QRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||++||||+. ++|++++|||||++||+.+...+.+.+.++.++.|+|+|||+.+..+.||+|++|..
T Consensus 134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999996 358999999999999999999999999998778899999999999999999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=230.12 Aligned_cols=185 Identities=19% Similarity=0.201 Sum_probs=139.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-C------CCCChHHHhcceEEEecCCC--CCcccHHHHHh-c
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-I------KELDPMYLRSQIGSVSQEPT--LFSGTIYENIL-Y 498 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-i------~~~~~~~lr~~i~~V~Q~~~--Lf~gTIreNI~-~ 498 (644)
..++|+||+|||||||+.+|.+.+.+..|++..++.+ + ...+.....-.+.+..|++. ++..+++++-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 11112233444555556533 45555554422 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccchhh--hhcCccccccCCC---------CCCChhHHHHHHHHHHHcc----CCCEE
Q psy5743 499 GVNDSSSVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGERG---------IMLSGGQKQRIAIARALIK----KSKIL 563 (644)
Q Consensus 499 g~~~~~~~~~~~i~~a~~~a~l~~~i~~--lp~Gl~T~ige~G---------~~LSGGQkQRiaLARAll~----~p~Il 563 (644)
..+ ....+.+++.+.++.++++.+... +|+|.-+.+.+.. ..||||||||++||||+.. +|+++
T Consensus 103 ~in-gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~l 181 (247)
T cd03275 103 RIN-GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFF 181 (247)
T ss_pred EEC-CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 211 124778888999999998644322 4566656665543 7899999999999999975 48999
Q ss_pred EeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 564 LLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 564 iLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||||++||..+...+.+.|.++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 182 llDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 182 VLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 99999999999999999999998865 7899999999999999999999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=235.68 Aligned_cols=213 Identities=25% Similarity=0.398 Sum_probs=170.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~i 478 (644)
++++|++.. ..++|+||++.+||+++|.|--|||+|=|+.+|.|..++.+|+|.+||+++.--++. ..+.-|
T Consensus 264 l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 264 LEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 567777532 147899999999999999999999999999999999999999999999999888865 777789
Q ss_pred EEEecC----CCCCcccHHHHHhcCCCCCCCCCHH-HHHHHHHHHhhccchhhhh---cCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQE----PTLFSGTIYENILYGVNDSSSVTKS-DIIHAAKEANAYGFVIDFK---NGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~----~~Lf~gTIreNI~~g~~~~~~~~~~-~i~~a~~~a~l~~~i~~lp---~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|||-| ..+..-||++||++..-.. .... -+....+..-..+++.+|. .+.+.++ .+||||-+|++
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~--~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKV 410 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRR--FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKV 410 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhh--hccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhH
Confidence 999964 4466779999999872210 1100 2333444444445555542 2333444 57999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|||.|..+|+||||||||-++|.-+.+.|.+.|+++. +++++|+||-.+..+ ..||||+||.+|+|+..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999875 579999999998876 5899999999999986444443
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-26 Score=259.39 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=174.5
Q ss_pred EEEEEEEEcCC-CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--CCCcEEEECCccCCCCChHHHhcc
Q psy5743 401 DFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 401 ~~~~vsf~Y~~-~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..+|+.|.-+. ...+.+|+||+=-++||..+|+.|+||||||||+++|+|=-. ..+|+|+|||.+..+ +..+|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 33444444321 134678999999999999999999999999999999999753 368999999998776 789999
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCC--CCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 478 IGSVSQEPT-LFSGTIYENILYGVND--SSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 478 i~~V~Q~~~-Lf~gTIreNI~~g~~~--~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|||.|++. +=.-||||-+.|..-= ..+.+++| ++++.+..++.+. -|..||+-|.+||.+||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 999999765 6567999999876410 01345544 3445555554332 56789999999999999999
Q ss_pred HHHHHHccCC-CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CeEEEecChh
Q psy5743 551 AIARALIKKS-KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK-GKIVEIGSYA 624 (644)
Q Consensus 551 aLARAll~~p-~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~-G~ive~Gt~~ 624 (644)
.||=-|..|| .||+||||||+||+++...|++.++++. .|+|++.-=|++|. .+..|+++.|+. |+.|..|+..
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999 9999999999999999999999999875 69999999999996 588999999974 7999888744
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=253.42 Aligned_cols=97 Identities=32% Similarity=0.541 Sum_probs=89.3
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHcc---CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIK---KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~---~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|++. .+++....|||||+||++|||||.+ +|+++||||||++||.++...+.+.|.++. +++|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688889999999999999999997 599999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHH
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHL 626 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eL 626 (644)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=218.69 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC-CCCChHHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI-KELDPMYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i-~~~~~~~lr~~ 477 (644)
-++++|++..-+. ..+.+++|||+|++||+++|.|-+|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..+++..+|+.
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4889999987542 34679999999999999999999999999999999999999999999999997 78899888876
Q ss_pred -eEEEecCC----CCCcccHHHHHhcCCCCCCC------CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 478 -IGSVSQEP----TLFSGTIYENILYGVNDSSS------VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 478 -i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++|||.|- -...-|+.||+.++.-+..+ .+..++.+.++..--.-.|. +.|-+++ -.+||||+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr--~~~~~~~----a~~LSGGN 408 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR--APSPDAP----ARSLSGGN 408 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--CCCCCcc----hhhcCCcc
Confidence 99999876 47788999999988643111 23344444333221111111 3444444 35799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
.||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.. +++.|++|+-.|+.+ .-||+|.||.+|+|+...+.+
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999987754 588999999999986 679999999999999887766
Q ss_pred H
Q psy5743 625 H 625 (644)
Q Consensus 625 e 625 (644)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=221.56 Aligned_cols=195 Identities=24% Similarity=0.306 Sum_probs=163.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..+++.+|+|.|+++ +.+.+.++++.+..-+++++||++|+||||++|++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 469999999999864 33789999999999999999999999999999999999999999999988 668
Q ss_pred eEEEecCCCCC-cccHHH--HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQEPTLF-SGTIYE--NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q~~~Lf-~gTIre--NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+|-.|...=| +-.+.+ -..=-.|. .++||+.+.|...|+...+..-| -..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG---~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPG---KTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCC---CCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHH
Confidence 99999965432 222211 11111122 47999999999888766554322 1469999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive 619 (644)
+.+.+|.+|+|||||.+||.++-..+-++|++. +--||+|||+.+.+.. |+.+++.++|+|..
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999887 6789999999999965 99999999999974
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=214.78 Aligned_cols=223 Identities=24% Similarity=0.374 Sum_probs=151.2
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
....|.++|++++|++ .+.++|..|++.+|++++|+|++||||||+++.+.|--.|..-++.+==. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 3457999999999975 46899999999999999999999999999999999998886555432110 0112221111
Q ss_pred cceEEEecCCCCCccc-------HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhh----hh-cCccc-cccCCCCCC
Q psy5743 476 SQIGSVSQEPTLFSGT-------IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID----FK-NGFDT-IVGERGIML 542 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gT-------IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~----lp-~Gl~T-~ige~G~~L 542 (644)
.- |...-+..+ ..|++.-..++.....-+++++-+...+.+.+=.+ |+ .|... ..-..-.+|
T Consensus 148 av-----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 148 AV-----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred HH-----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 10 111111111 12333322221000111122222222222211111 11 12222 223345789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHh-hcCEEEEEeCCe-EEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIR-KSNQICVLDKGK-IVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~-~aD~Iivl~~G~-ive 619 (644)
|||||-|++|||||+.+|++|+|||||.+||.++...+.+.|.+. ++ |+++++|.-.++. -|.+|+.|++++ +..
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999999999999999999999999999999999999999999887 55 8999999999995 599999999999 778
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|+|++.+..
T Consensus 301 ~Gnydqy~~t 310 (614)
T KOG0927|consen 301 EGNYDQYVKT 310 (614)
T ss_pred cCCHHHHhhH
Confidence 9999998753
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=211.42 Aligned_cols=198 Identities=27% Similarity=0.395 Sum_probs=152.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-+-+.||+|.||+ .+|.+++++|-|.--..||||||+|.|||||++||.|-++|+.|+.+=+- |=+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 56899999999999999999999999999999999999999999887543 4478
Q ss_pred EEEecCCC---CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPT---LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~---Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|+.-|..- --..|-.|-+.-+-+ .+.++..+++-..|+..- -+|. .-..||||||-|+++|-.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FN----lpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFN----LPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAEL 718 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcC----CChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHH
Confidence 88887542 112344444443321 455666666655554321 2221 124699999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcC-EEEEEeCCeEEE-ecChhH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSN-QICVLDKGKIVE-IGSYAH 625 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD-~Iivl~~G~ive-~Gt~~e 625 (644)
-++.|+||||||||.+||.++-..+-++|.+. +-.||+|+|+-..+...| ..+|+++-.|-| .|.+++
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999999999988 678999999999887765 455666554443 355543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-23 Score=200.51 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=118.2
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
+++++++.+| +.+|+||+|||||||+..|.-.+....+. .-.|. ++-..+ .-...|.++.|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~-~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASD-TNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccc-ccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----C
Confidence 5566777776 77999999999999999997544332210 01122 111111 11456888888877665 2
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH----ccCCCEEEeecccCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL----IKKSKILLLDEATSA 571 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSa 571 (644)
+. ...+.+++.++++. ..- ..+...+||||||||++||||+ +.+|++++|||||++
T Consensus 84 -----~~-~~~~~~~~~~~l~~----------~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 -----PL-CVLSQDMARSFLTS----------NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred -----cC-CHHHHHHHHHHhcc----------ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 21 00112222222222 112 2334568999999999999999 699999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC----CceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 572 LDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
||..+...+.+.|.+..+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999999988643 358999999999999999999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-23 Score=214.11 Aligned_cols=205 Identities=25% Similarity=0.318 Sum_probs=149.6
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
..+|..+|.+.+|.+ +.+|.+-++++..|-..++||++|+|||||++.|.. |+|..-.++ ++.|-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec
Confidence 346999999999963 578999999999999999999999999999999998 333221110 00110
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCC-CCCHHHHHH-HHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSS-SVTKSDIIH-AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~-~~~~~~i~~-a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
--....|+ .+=.+|-|.-+..-.+.-. ..+.+|+.. ++.-.|..+.....|. ..||||=|=|++|||
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHH
Confidence 00001111 2233444444433321100 014566666 6777777666665553 479999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
|++++||||+|||||.+||..+-..+.+.|... +.|+|+|+|+-.++.. |.-|+.+++-++- ..|++++..+.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999988876 4899999999999955 7888888876663 77899888764
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=203.61 Aligned_cols=197 Identities=17% Similarity=0.241 Sum_probs=140.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE--EECCccCCCCChHHHhcce---EEEecCCCCCcccHHHHH
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI--LIDGVDIKELDPMYLRSQI---GSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~~~~~~~lr~~i---~~V~Q~~~Lf~gTIreNI 496 (644)
=+.+.+||+++|+|++|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ -++.+-.. +-...+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~----~~~~~~ 85 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE----PPERHV 85 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC----CHHHHH
Confidence 35788999999999999999999999999998764433 3332222234555555544 11111110 111111
Q ss_pred hcCCCCCCCCCHHHHHHHHH---HHh-----hccchhhhhcCccccccCCCCCCChhH--------HHHHHHHHHHccCC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAK---EAN-----AYGFVIDFKNGFDTIVGERGIMLSGGQ--------KQRIAIARALIKKS 560 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~---~a~-----l~~~i~~lp~Gl~T~ige~G~~LSGGQ--------kQRiaLARAll~~p 560 (644)
... . .+.+.++ ..| +-|.+.++|+++++.+|+.|.++|||| +||+++||++++++
T Consensus 86 ~~~--------~-~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 86 QVA--------E-MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHH--------H-HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 100 0 1111111 112 346788899999999999999999999 99999999999999
Q ss_pred CEEEeecccCCCCHHHHHH--HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 561 KILLLDEATSALDAENEYL--VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~--i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|.+| ||+++|+.+|.. +.+.++. .++|.|+++||+++..++|.|.||++|++ |++++.. ++.|+.++
T Consensus 157 sIt~l--~T~~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~ 226 (249)
T cd01128 157 SLTII--ATALVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMW 226 (249)
T ss_pred ceEEe--eeheecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHH
Confidence 99999 999999866653 4333332 47999999999999999999999999997 7899875 57888886
Q ss_pred Hhh
Q psy5743 639 KYQ 641 (644)
Q Consensus 639 ~~q 641 (644)
+.+
T Consensus 227 ~~r 229 (249)
T cd01128 227 LLR 229 (249)
T ss_pred HHH
Confidence 543
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-22 Score=188.75 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=78.3
Q ss_pred hhhhhcCccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEcc
Q psy5743 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAH 598 (644)
Q Consensus 524 i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaH 598 (644)
+.-+|+|..|+| ||||||||++||||+. .+|+++++||||++||+.+.+.+.+.+.+..+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456799999998 9999999999999984 79999999999999999999999999988754 489999999
Q ss_pred CchHHhhcCEEEEEeC
Q psy5743 599 RLSTIRKSNQICVLDK 614 (644)
Q Consensus 599 rl~~i~~aD~Iivl~~ 614 (644)
+++.+..||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-22 Score=203.59 Aligned_cols=183 Identities=26% Similarity=0.424 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCCccccceeEEEeC-----CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQS-----GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~-----G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+.-+.|++- ...+.+..|++.+ ||.++++||+|-||||++++|+|..+|++|+ ..+= .+
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~-------------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDL-------------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cccc-------------eE
Confidence 444667642 3446677777665 6789999999999999999999999999998 2221 78
Q ss_pred EEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|=||-.. -|+||+++=+.-..++. +...-. . ..|. -|..++-.+-..-.+||||+.||+|||-||.
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s~~-----~----~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSA--FGSSYF-----K----TEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALS 471 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhh--cccchh-----H----Hhhc-CccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence 89999432 48999998876443320 111111 1 1111 1445555555566789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK 614 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~ 614 (644)
|++|+++||||++.||.+..-.+-+.|++.. .++|.++|-|++-.+.. +|+++|.+.
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999998888888888865 47899999999998854 899999973
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-21 Score=208.18 Aligned_cols=109 Identities=31% Similarity=0.512 Sum_probs=96.3
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|+.. .+|.....|||||.|||-||.-|.+.+ -++||||||.+|-.+.-+++++.|.++. ++.|||+|-|+|+.|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 6654 679999999999999999999999987 9999999999999999999999998864 6899999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
.||.|+-| +.|+|+.+||++|+.+.+.++-.+.+
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yL 929 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYL 929 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHH
Confidence 99999999 47899999999999986544333333
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-21 Score=177.82 Aligned_cols=229 Identities=22% Similarity=0.348 Sum_probs=176.9
Q ss_pred EEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHHh
Q psy5743 401 DFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 401 ~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~lr 475 (644)
.++|++.-.... ....+.+++|+++..||+-++||+||||||-++|.+.|..+ .+.-+..+|++|+-.+++..-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 344554443321 23457999999999999999999999999999999999875 3566778899999999999988
Q ss_pred cc----eEEEecCCCCCcc---c----HHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhcc--chhhhhcCccccccC
Q psy5743 476 SQ----IGSVSQEPTLFSG---T----IYENILYGVNDS-----SSVTKSDIIHAAKEANAYG--FVIDFKNGFDTIVGE 537 (644)
Q Consensus 476 ~~----i~~V~Q~~~Lf~g---T----IreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~--~i~~lp~Gl~T~ige 537 (644)
+- |++++|+|.-.-+ + +-+||-...=.. -.-...+..+.+..+|+.| +|++ .|-
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP----- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP----- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-----
Confidence 75 5689999985432 2 345664321000 0123445667788888865 3332 222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
..|-.|+-|++.||-|+..+|++||-||||.++|+.|..+|...+.++- .+.|+++++|++.++ +.||+|-||-=
T Consensus 157 --~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred --chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 3456678899999999999999999999999999999999999987764 467899999999998 56999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+-+|++.-++|++.+.-.|.+-.-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999987777766543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-21 Score=189.77 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=115.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC---CCccc----
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT---LFSGT---- 491 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~---Lf~gT---- 491 (644)
+++.++..+| ..+|+|++|||||||+..|.-.+-...... . +.-..+++.+. =.++.+ -|++.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~~---g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVKR---GCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhhC---CCCcEEEEEEEEeCCCcc
Confidence 3444544443 668999999999999998866552221100 0 00011111110 011110 01111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH----HccCCCEEEeec
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA----LIKKSKILLLDE 567 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA----ll~~p~IliLDE 567 (644)
-.+|+++. .+.+.+.+.+..... |.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++++||
T Consensus 85 ~~~n~~~~------~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDE 156 (213)
T cd03277 85 QVDNLCQF------LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDE 156 (213)
T ss_pred ccCCceEE------EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEec
Confidence 34455533 345666666666554 5556677766543 55678999999999887755 468999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCC---ceEEEEccCchHH-hhcC--EEEEEeCCe
Q psy5743 568 ATSALDAENEYLVQSAIEKLIEG---KTVLTIAHRLSTI-RKSN--QICVLDKGK 616 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~~~---~TvI~IaHrl~~i-~~aD--~Iivl~~G~ 616 (644)
||++||+.+.+.+.+.|.+..+. .|+|+|||++..+ ..|| +|+++++|+
T Consensus 157 P~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 157 INQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999999887543 4799999997544 4565 777777775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=173.72 Aligned_cols=211 Identities=23% Similarity=0.313 Sum_probs=156.9
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC-CC-----
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-LD----- 470 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-~~----- 470 (644)
+..|+++++.|+|+.. .|++.|+|+++|.|..+.+||.+|||||||+|+|.|-.-.-.|.|.+.|.+--. -+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999863 389999999999999999999999999999999999998888999999976432 11
Q ss_pred -----hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 471 -----PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 471 -----~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
-.+|++..+.-- +..|.-+-=.+-+.||-.. .+.++=++ |-+=+|-.+-=+-..+|-|
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g---~dp~Rre~-------------LI~iLDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGG---DDPERREK-------------LIDILDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHHhhccC---CChhHhhh-------------hhhheeccceEEEeecccc
Confidence 123444444333 2222222112233333221 11111111 2222444444455689999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
||+|+.|+-.|++.=++|+|||-|-.||.-....+++-+++-. +++|+|..||=..-+ ..+.+++.|.+|+++..-+
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999999987743 588999999999877 5589999999999998655
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
+++.
T Consensus 232 ~~~i 235 (291)
T KOG2355|consen 232 YQKI 235 (291)
T ss_pred cchh
Confidence 5544
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=225.62 Aligned_cols=207 Identities=22% Similarity=0.250 Sum_probs=149.2
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHh------c---cCCCCCcEEEECCccCCCCCh----------HHHhcce
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL------R---LYDPQNGKILIDGVDIKELDP----------MYLRSQI 478 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~------g---~~~p~~G~I~idg~~i~~~~~----------~~lr~~i 478 (644)
|+|++++||-|..++|.|.||||||||++=.+ . -.+..+--|.||-.||..-.. +.+|+-.
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999997554 1 113344568888888865443 3445444
Q ss_pred EEEec------CC--C--------------------------------------------------------CCcccHHH
Q psy5743 479 GSVSQ------EP--T--------------------------------------------------------LFSGTIYE 494 (644)
Q Consensus 479 ~~V~Q------~~--~--------------------------------------------------------Lf~gTIre 494 (644)
+-.|+ .+ + +++.||.|
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 32221 01 1 12333333
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCC
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSA 571 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSa 571 (644)
-+.|+.. ..++.+.+ +.+.++--||- .+|+.-..|||||+|||-||.-|.++ +.++||||||.+
T Consensus 1666 a~~~F~~------~~~i~~~L------~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~G 1732 (1809)
T PRK00635 1666 VAETFPF------LKKIQKPL------QALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATS 1732 (1809)
T ss_pred HHHHhhc------cHHHHHHH------HHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Confidence 3333311 11111111 11122222443 46999999999999999999999976 789999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEe------CCeEEEecChhHHhcCCCcHHHHH
Q psy5743 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLD------KGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~------~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|+.+.-+.+.+.++++. .+.|+|+|.|+++.++.||.|+-|. .|+|+.+||++|+.+.+++.=.+.
T Consensus 1733 Lh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~ 1805 (1809)
T PRK00635 1733 LDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTY 1805 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHH
Confidence 99999999999998874 5899999999999999999999994 689999999999998755544433
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=192.81 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 541 MLSGGQKQRIAIARALIK----KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
.|||||+||++|||+++. +|++++|||||++||+++...+.+.+.+..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999999877899999999999999999999999874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=215.99 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=172.3
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC---CCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS- 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~- 489 (644)
...+|+|+|.-++||+.+.+.||.|||||||++.|.|-.+- ..|+|..||.+.+++-+ ++.++|.+|++..|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 34689999999999999999999999999999999998864 35699999999999988 789999999988886
Q ss_pred ccHHHHHhcCCCCCC------CCCHHHHHHHHHHHhhccc---hhhhhcCccccccCC-CCCCChhHHHHHHHHHHHccC
Q psy5743 490 GTIYENILYGVNDSS------SVTKSDIIHAAKEANAYGF---VIDFKNGFDTIVGER-GIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 490 gTIreNI~~g~~~~~------~~~~~~i~~a~~~a~l~~~---i~~lp~Gl~T~ige~-G~~LSGGQkQRiaLARAll~~ 559 (644)
-|+||-|-|...-+. +.++.|-.++ ..|. +-.|....||.||++ ....|||||.|+++|-++..+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~-----~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~ 278 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAA-----MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGP 278 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHH-----HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecC
Confidence 699999988653211 1223332211 1222 224677899999964 568999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch--HHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS--TIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~--~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|+++..||+|-+||+.|.-+|.++|+++.+ +.|.++.=|+++ +..-.|+|++|.+|+++.+|+.++.+
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999999999988754 678777777754 68899999999999999999999886
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=183.08 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=109.8
Q ss_pred ccceeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 418 LNDLSLKIQSGS-MTSVIGSSGSGKSTLAMLLL--------RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 418 L~~isl~i~~G~-~vaIvG~SGsGKSTLl~lL~--------g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
.-++||++++|+ .++|+||+|||||||++.+. |.+.|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6555532111 1233333211
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
.+ |.+..+.++-..+|+|+|||..+++++ .+|+++++|||
T Consensus 78 --------~l-------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp 117 (200)
T cd03280 78 --------DI-------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDEL 117 (200)
T ss_pred --------ec-------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 00 111223344468999999999999995 89999999999
Q ss_pred cCCCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 569 TSALDAENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 569 TSaLD~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|+++|++....+.. .++++. .+.|+|++||..+..+.||++++|++|++...+
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999998887754 455543 378999999998888999999999999998653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=189.47 Aligned_cols=181 Identities=28% Similarity=0.422 Sum_probs=142.0
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--------CCCCCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--------YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--------~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
.++|+|+||+|+||+.++|||+|||||||++++++|. |.|++|.|.+--..++.+-+.++ +|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~---------Ep~ 466 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY---------EPE 466 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccc---------ccc
Confidence 4689999999999999999999999999999999986 57999999875533333322221 333
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
+=.-||.|-+.-- .-|-..-.+.+..+|+.|-+. |-.. -..||-|||-|..||+++-..|.+++.|
T Consensus 467 f~~~tilehl~s~-----tGD~~~AveILnraGlsDAvl-----yRr~----f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRSK-----TGDLNAAVEILNRAGLSDAVL-----YRRK----FSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhhc-----cCchhHHHHHHHhhccchhhh-----hhcc----HhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 3345777776421 123344456778888876543 2222 2469999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh--cCEEEEEeCCeEE
Q psy5743 567 EATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK--SNQICVLDKGKIV 618 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~--aD~Iivl~~G~iv 618 (644)
|.-|+||..|...+...|.++. .+.|.++||||++.+.. =|+++.+.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999999887 68999999999999865 4999988777654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=165.21 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=100.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccHHHHHhcCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
++.+.+|..+.|+||+||||||+++.+....-..+|.+.-.. +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455679999999999999999997766655555443311 00 011 011111111
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHH
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK----KSKILLLDEATSALDAEN 576 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~ 576 (644)
.-+. .+||+||+||++|||++.. +|+++++|||++++|++.
T Consensus 72 ------------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~ 116 (162)
T cd03227 72 ------------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRD 116 (162)
T ss_pred ------------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHH
Confidence 0000 1199999999999999986 789999999999999999
Q ss_pred HHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 577 EYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 577 e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
...+.+.+.+..+ +.|+|++||+++....+|+++.|+.
T Consensus 117 ~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999999987643 5899999999999999999999974
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-19 Score=183.98 Aligned_cols=189 Identities=25% Similarity=0.370 Sum_probs=131.3
Q ss_pred EEEEEcCCCCCCccccceeEE-EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCCh
Q psy5743 404 NIRFSYPSRPDAVILNDLSLK-IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELDP 471 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~-i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~~ 471 (644)
++.-+|..+. ..|. .|- .++|+.++|+|++|-||||-+|+|.|.+.|+=|+--= .|..++++=.
T Consensus 79 e~vHRYg~Ng--FkL~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG--FKLY--RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc--eEEe--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 5677786432 2233 333 4579999999999999999999999999998775420 1111111100
Q ss_pred H----HHh--cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 M----YLR--SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~----~lr--~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+ .+| ..+-||--=|-.+.|+++|=+.--++. ... ++.++.| +++-.+...-..||||
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~------g~~---------devve~l--~L~nvl~r~v~~LSGG 217 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDER------GKF---------DEVVERL--GLENVLDRDVSELSGG 217 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhc------CcH---------HHHHHHh--cchhhhhhhhhhcCch
Confidence 0 000 012333345667777777776533211 112 2233332 3444555566789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEe
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLD 613 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~ 613 (644)
+-||+|||-|+.|+++++++|||||-||....-..-+.|+++.+ +++||+|-|+|..+.. +|-|.++-
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999988888888888877 6999999999999955 78888875
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=174.66 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=119.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----------------------------------------CCc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----------------------------------------QNG 457 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------------------------------------~~G 457 (644)
++.++++.+| .++|+|||||||||++.+|.-+... ...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4456666665 6889999999999999886533310 111
Q ss_pred EEEECCccCCC-CChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC--HHHHHHHHHHHhhccchhh---hhcCc
Q psy5743 458 KILIDGVDIKE-LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT--KSDIIHAAKEANAYGFVID---FKNGF 531 (644)
Q Consensus 458 ~I~idg~~i~~-~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~--~~~i~~a~~~a~l~~~i~~---lp~Gl 531 (644)
.+++||..++. -+...+-..+.+.|++..|+.++-.+-..|-+.-..... ..+.++..+++ ..-... -|+..
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~g~~~d 169 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKA--LRQRNALLKGPHRD 169 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhCCCChh
Confidence 45567766654 222233445667777777885543333333221100011 11111111111 111111 35555
Q ss_pred cccccCCCC----CCChhHHHHHHHHHHH---------ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 532 DTIVGERGI----MLSGGQKQRIAIARAL---------IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 532 ~T~ige~G~----~LSGGQkQRiaLARAl---------l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
+..+.-++. .+|+||+|+++|||++ +++|++++|||||++||+.....+.+.+.+. . .+++++|
T Consensus 170 ~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~~~ 246 (270)
T cd03242 170 DLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVTTT 246 (270)
T ss_pred heEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEEeC
Confidence 554443333 4899999999999997 4899999999999999999999999999775 3 4455555
Q ss_pred CchHH-hhc---CEEEEEeCCeE
Q psy5743 599 RLSTI-RKS---NQICVLDKGKI 617 (644)
Q Consensus 599 rl~~i-~~a---D~Iivl~~G~i 617 (644)
....+ ..| ++|+.+++|+|
T Consensus 247 ~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 247 DLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CchhccchhccCccEEEEeCcEE
Confidence 54444 334 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-18 Score=167.79 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTI 492 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTI 492 (644)
...+.+|++++.++|++++|+|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3578999999999999999999999999999999982 13444666 6666542211 1
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecc--
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL--IKKSKILLLDEA-- 568 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl--l~~p~IliLDEa-- 568 (644)
.+.| +..+ |++-.+ ..++|.|++|+..+|+++ ..+|+++|||||
T Consensus 73 ~~~i---------------------------l~~~--~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 73 VDCI---------------------------LARV--GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred ccee---------------------------Eeee--ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 1111 1111 111111 357999999999999999 899999999999
Q ss_pred -cCCCCHHHHHHH-HHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 569 -TSALDAENEYLV-QSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 569 -TSaLD~~~e~~i-~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|+++|....... .+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999855433 255543 24789999999877778899999999999976653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=148.08 Aligned_cols=76 Identities=22% Similarity=0.217 Sum_probs=72.3
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999999 99999999
Q ss_pred HHhc
Q psy5743 495 NILY 498 (644)
Q Consensus 495 NI~~ 498 (644)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=192.79 Aligned_cols=100 Identities=26% Similarity=0.439 Sum_probs=90.4
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
|++.. .+.....|||||+||+.|||||..+| ++|||||||++||+++...+.+.|+++. +++|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45433 56778899999999999999999986 8999999999999999999999998875 47899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 89999999999998643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-17 Score=161.36 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIr 493 (644)
++|++|++++. |+.++|+||||||||||++.+.|... +..+|.++..- .++.|...+|. -|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46788887764 79999999999999999999987543 22356555331 25667555554 6899
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
||+.++.. ...+++.++.+ .++.+. .++|+++|+||||+++|
T Consensus 78 d~l~~~~s----~~~~e~~~~~~------iL~~~~----------------------------~~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGIS----YFYAELRRLKE------IVEKAK----------------------------KGEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccC----hHHHHHHHHHH------HHHhcc----------------------------CCCCeEEEEecccCCCC
Confidence 99988742 12233222211 111111 07999999999999999
Q ss_pred HHHHHHHHH-HHHHHc-CCceEEEEccCchHHhhc
Q psy5743 574 AENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 574 ~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~a 606 (644)
+.+...+.. .+.++. ++.|+|++||+++.+...
T Consensus 120 ~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 120 SRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 997765543 344432 378999999999887655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-17 Score=161.34 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=102.4
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g 499 (644)
.++++.+|++++|+||+|||||||++.+.+. +.+..|...-. .+..+++..|.-.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~------------- 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFT------------- 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEE-------------
Confidence 3555668999999999999999999999943 22222211100 0112333222111
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
.++.. + .+-++-..+|++++| +..+-+...+|+++||||||+++|+.....
T Consensus 78 --------------------------~~~~~-d-~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 78 --------------------------RIGAE-D-SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred --------------------------EecCc-c-cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11100 0 112223455666665 777778889999999999999999987666
Q ss_pred HHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 580 VQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 580 i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+... ++.+. .+.++|++||+.+.++.+|++..+++|++.+.++.+++
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5544 33332 37899999999999999999999999999988875444
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=186.57 Aligned_cols=100 Identities=27% Similarity=0.462 Sum_probs=90.6
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~ 605 (644)
|++.. ....-..|||||||||+|||||..+| ++|||||||++||++....+.+.|+++.+ +.|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 46677899999999999999999997 99999999999999999999999988754 7899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
||+|++| ++|+|+..|+++++++.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998754
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-17 Score=196.96 Aligned_cols=134 Identities=28% Similarity=0.347 Sum_probs=112.9
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH------HHHHHHHHccCC
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ------RIAIARALIKKS 560 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ------RiaLARAll~~p 560 (644)
.|+||++|||.+ +|+ ++++ +.+++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|
T Consensus 1153 ~~~~~~~~~i~~-~~~---~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSD---ADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred HcCccHHHHhhc-CCC---CChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 589999999999 776 5666 7899999999999999999 99999887 89999999 999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHc------CCceEEEEccCchHHh------hcCEEEEEeC----CeEEEecChh
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLSTIR------KSNQICVLDK----GKIVEIGSYA 624 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~------~~~TvI~IaHrl~~i~------~aD~Iivl~~----G~ive~Gt~~ 624 (644)
++|+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+. .+|+.|.+.. -.+++.-+|+
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPS 1304 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCc
Confidence 9999999999999999999998887763 3679999999999876 4677776642 1334444555
Q ss_pred HHhc
Q psy5743 625 HLIK 628 (644)
Q Consensus 625 eLl~ 628 (644)
.+++
T Consensus 1305 ~~~~ 1308 (1311)
T TIGR00606 1305 SLGK 1308 (1311)
T ss_pred cccc
Confidence 5443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=161.17 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=107.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
+.++|+||+|||||||++.|+|++.|.+|+|.++|+++..++ ..+++..++++||...--.-++.||. |
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h------
Confidence 689999999999999999999999999999999999998875 67888889999997533223444442 1
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~ 587 (644)
+..+ -..++|+ .+|+++++|||++. ..+.+.+..+
T Consensus 182 --------k~~~-----------------------------~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~ 216 (270)
T TIGR02858 182 --------KAEG-----------------------------MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEAL 216 (270)
T ss_pred --------HHHH-----------------------------HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHH
Confidence 1111 1556666 49999999999742 2333344444
Q ss_pred cCCceEEEEccCchH--H------------hhcCEEEEEeCCeEEEecChhHHh
Q psy5743 588 IEGKTVLTIAHRLST--I------------RKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 588 ~~~~TvI~IaHrl~~--i------------~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
..+.|+|+++|..+. + ..+|++++|++|+ ..|+.+++.
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 468999999997666 3 4479999999887 677776654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=155.48 Aligned_cols=76 Identities=28% Similarity=0.400 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh---cC
Q psy5743 540 IMLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK---SN 607 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~---aD 607 (644)
..+|+||+|+++||+++. ++|+|++||||+|.||+.....+.+.+.+. +..+++.||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999884 899999999999999999999999888764 5688999998876544 56
Q ss_pred EEEEEeCCeE
Q psy5743 608 QICVLDKGKI 617 (644)
Q Consensus 608 ~Iivl~~G~i 617 (644)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=145.18 Aligned_cols=141 Identities=21% Similarity=0.240 Sum_probs=97.0
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE-EecCCCCCcccH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS-VSQEPTLFSGTI 492 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~-V~Q~~~Lf~gTI 492 (644)
++++.+|+++++++|+.++|+|||||||||+++.+.+.. +..++|. ||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998773 2223332 21111 11134
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
.|||... + +.+..+.++.+.+|+|++|+ ..+-++..+|++++||||++++
T Consensus 72 ~d~I~~~---------------------------~--~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSR---------------------------L--SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEe---------------------------c--CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 4444221 1 12223455667899999976 4555577899999999999999
Q ss_pred CHHHHHHHH-HHHHHHc-CCceEEEEccCchHHhhcC
Q psy5743 573 DAENEYLVQ-SAIEKLI-EGKTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 573 D~~~e~~i~-~~l~~~~-~~~TvI~IaHrl~~i~~aD 607 (644)
|+.....+. +.++.+. .+.++|++||..+.+..++
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 996533332 2333332 3789999999999886654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.2e-15 Score=145.48 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHH----HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 541 MLSGGQKQRIAIA----RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 541 ~LSGGQkQRiaLA----RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.||||||-+++|| ..-+.++|+++|||+.++||..+...+.+.|.+..++.-+|++||+..+...||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999997 333678999999999999999999999999999988889999999999999999998864
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-15 Score=144.33 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=101.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIr 493 (644)
..+.+|+++++++ ++++|+|||||||||+++.+.+..-. |+ .|.++ . ..+..++++.| +|. -+++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCch
Confidence 4678899999887 99999999999999999999764311 10 11111 0 11234555544 222 1333
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH----HHHHHHH--ccCCCEEEeec
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR----IAIARAL--IKKSKILLLDE 567 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR----iaLARAl--l~~p~IliLDE 567 (644)
||+ |+||.++ ..+++++ ..+|++++|||
T Consensus 84 ~~l----------------------------------------------s~g~s~f~~e~~~l~~~l~~~~~~~llllDE 117 (216)
T cd03284 84 DDL----------------------------------------------AGGRSTFMVEMVETANILNNATERSLVLLDE 117 (216)
T ss_pred hhh----------------------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 443 3333332 3455555 36999999999
Q ss_pred c---cCCCCHHH-HHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 568 A---TSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 568 a---TSaLD~~~-e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
| |+++|... ...+.+.+.+. .+.|+|++||..+....+|++..+++|++...++-+++
T Consensus 118 p~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 118 IGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9 99999864 24455555442 37899999999988888998888888888776655554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-15 Score=151.01 Aligned_cols=198 Identities=25% Similarity=0.366 Sum_probs=137.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
+|.++|.+.+-. .+..+-|-||+|-.|...++|||+|-|||||++-|.- +--|..=.|+++.+.+
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv---------- 330 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV---------- 330 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee----------
Confidence 488888888764 3467899999999999999999999999999998864 3334444455444333
Q ss_pred ceEEEecCCCCCcccHHHHHh---------------------cCCCCCCCCCHHHHHHH---HHHHhhccchh---h-h-
Q psy5743 477 QIGSVSQEPTLFSGTIYENIL---------------------YGVNDSSSVTKSDIIHA---AKEANAYGFVI---D-F- 527 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~---------------------~g~~~~~~~~~~~i~~a---~~~a~l~~~i~---~-l- 527 (644)
.-=+.|--+.+. -|+. --.|++.++ ++..|.+.--. + |
T Consensus 331 ---------vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~----taaErl~~v~~ELraiGA~sAEarARRILA 397 (807)
T KOG0066|consen 331 ---------VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDT----TAAERLKEVADELRAIGADSAEARARRILA 397 (807)
T ss_pred ---------eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHhccccchhHHHHHHh
Confidence 322222222222 1211 112222222 23333221100 0 0
Q ss_pred hcCccccccCCC-CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-
Q psy5743 528 KNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK- 605 (644)
Q Consensus 528 p~Gl~T~ige~G-~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~- 605 (644)
--|++-..-++. ..+|||=|-|++|||||+-.|-+|.|||||.+||-..--.+-+.|..+ .+|.++|+|+-.++.+
T Consensus 398 GLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~V 475 (807)
T KOG0066|consen 398 GLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSV 475 (807)
T ss_pred hcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHH
Confidence 126666666665 479999999999999999999999999999999998777777777777 6899999999999955
Q ss_pred cCEEEEEeCCeEE-EecChh
Q psy5743 606 SNQICVLDKGKIV-EIGSYA 624 (644)
Q Consensus 606 aD~Iivl~~G~iv-e~Gt~~ 624 (644)
|..|+.+|+-+.. ..|+|.
T Consensus 476 CtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 476 CTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHHhhhhhhhhhhhcchHH
Confidence 8999999988775 556664
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=146.09 Aligned_cols=196 Identities=24% Similarity=0.376 Sum_probs=147.7
Q ss_pred EEEcCCCCCCccccceeEEEeCCC-----EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 406 RFSYPSRPDAVILNDLSLKIQSGS-----MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 406 sf~Y~~~~~~~vL~~isl~i~~G~-----~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
.|+||+ .+..+.+..|.|+.|+ .+...|++|-||||+++.++|..+|++| .++..+ .++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~l-------nVSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVL-------NVSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Cccccc-------ceec
Confidence 478885 4567899999999986 5788999999999999999999999865 233333 5778
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 481 VSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 481 V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
=||... =|.||+|.=+ .++++.+...-.+-..+++ |-..+..++..-.+||||+.||+|||=+|=+.
T Consensus 407 kpqkispK~~~tvR~ll-----------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKp 474 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLL-----------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKP 474 (592)
T ss_pred cccccCccccchHHHHH-----------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCC
Confidence 888643 6889998766 3455555544444333433 55566667778889999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHH-hhcCEEEEEeCC--eEEEecChhHHhc
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTI-RKSNQICVLDKG--KIVEIGSYAHLIK 628 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~--~~~~TvI~IaHrl~~i-~~aD~Iivl~~G--~ive~Gt~~eLl~ 628 (644)
+++++.|||.+-||++....--..+++. -.++|-.+|-|.+-.. =.|||++|.+.- ...-.-.++.|++
T Consensus 475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999999776666666663 3589999999997655 458999999742 2222334455543
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=165.52 Aligned_cols=107 Identities=27% Similarity=0.434 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEeeccc-CC
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERG------IMLSGGQKQRIAIARALI----------KKSKILLLDEAT-SA 571 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G------~~LSGGQkQRiaLARAll----------~~p~IliLDEaT-Sa 571 (644)
+.+.+.++..+. ++...+|+++++.+++.| ..||||||||++||||+. .+|+++|||||| ++
T Consensus 431 ~~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ 509 (562)
T PHA02562 431 KQINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGA 509 (562)
T ss_pred HHHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcc
Confidence 345555555553 556678999999999999 789999999999999987 599999999998 78
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC-CeE
Q psy5743 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK-GKI 617 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~-G~i 617 (644)
||+.+...+.+.|.++ ++.|+|+|||+++....||++++|++ |+.
T Consensus 510 ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 510 LDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred cchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 9999999999999988 78999999999999999999999986 543
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=141.05 Aligned_cols=177 Identities=20% Similarity=0.260 Sum_probs=127.4
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC---CccCCC-----CChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID---GVDIKE-----LDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~-----~~~~~lr~~i~~V~Q~~~ 486 (644)
..+++++ +++++|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++...+++.|.+|.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4579999 9999999999999999999999999999999999999995 444453 466678888999976422
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHH-HHHHHHHccCCCEEE
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQR-IAIARALIKKSKILL 564 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQR-iaLARAll~~p~Ili 564 (644)
..-+++..+.-...+.|+..+ +|.|-.+- +.=.++- |.|| |+++ ..+||
T Consensus 225 -------------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A--~A~rEisl~---~ge~P--- 275 (438)
T PRK07721 225 -------------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVA--MAQREIGLA---VGEPP--- 275 (438)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHH--HHHHHHHHh---cCCCC---
Confidence 224444444444445555553 36665432 2211111 1111 1111 23333
Q ss_pred eecccCCCCHHHHHHHHHHHHHHc---CCc-----eEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLI---EGK-----TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~---~~~-----TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|+++|+..-..+.+.+++.. ++. ||++.+|+++. ..||++.++.+|+|+.+|+-.+
T Consensus 276 ---~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 ---TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999999988888875 354 99999999996 8899999999999998887544
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=127.33 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=92.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh--ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc--cc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS--GT 491 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gT 491 (644)
.|-.|+++.=..+.+++|+||+|+|||||++.+. +.+ +..|...... ...++|..|.-.-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4555666542223799999999999999999998 434 5667665443 125677777533221 11
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
+.++ +-|. --+-||+++|+++..+|++++||||+++
T Consensus 85 i~~~-----------------------------------~S~f---------~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 85 VSSG-----------------------------------QSAF---------MIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred hhhc-----------------------------------cchH---------HHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 1111 1111 3356999999999999999999999999
Q ss_pred CCHHH-HHHHHHHHHHHcC----CceEEEEccCchHHhhcC
Q psy5743 572 LDAEN-EYLVQSAIEKLIE----GKTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 572 LD~~~-e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~aD 607 (644)
+|+.. .....+.++++.+ +.++|++||.++.+....
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 99864 4444455666543 248999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-13 Score=129.92 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.1
Q ss_pred ccCCCCCCChhHHHHHHHHHHHcc--CCCEEEeecccCCCCHHHHHHHHHH-HHHHc--CCceEEEEccCchHHhhcCE
Q psy5743 535 VGERGIMLSGGQKQRIAIARALIK--KSKILLLDEATSALDAENEYLVQSA-IEKLI--EGKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 535 ige~G~~LSGGQkQRiaLARAll~--~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~--~~~TvI~IaHrl~~i~~aD~ 608 (644)
+.++-+.+|+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .+.++|++||..+..+.+|+
T Consensus 55 ~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 55 LAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 35556678888887 5555555 9999999999999999966665444 44443 26899999999988777875
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-13 Score=132.49 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccc-----CCCCHHHHHHHHHHHHHHc
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEAT-----SALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaT-----SaLD~~~e~~i~~~l~~~~ 588 (644)
-|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998863
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-12 Score=146.36 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=99.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCC-CEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSG-SMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+.++++..-+-.. .++ -.+|+++.+| +.++|+||||+|||||+|.+.|. +.+..|.
T Consensus 295 ~i~l~~~rhPll~~-~~~--vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------ 353 (771)
T TIGR01069 295 KIILENARHPLLKE-PKV--VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------ 353 (771)
T ss_pred CEEEccccCceecC-Cce--EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------------
Confidence 57777775432211 111 1378888877 99999999999999999999987 3343331
Q ss_pred ceEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 477 QIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 477 ~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+||.... .+ .+.+++... ..+ +-.+.++-+.+|+|++|+..++++
T Consensus 354 ---~Vpa~~~~~~--~~~d~i~~~------i~~-----------------------~~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 ---PIPANEHSEI--PYFEEIFAD------IGD-----------------------EQSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred ---CccCCccccc--cchhheeee------cCh-----------------------HhHHhhhhhHHHHHHHHHHHHHHh
Confidence 4444332 11 122232111 111 011234456799999999999998
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHHh
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
+ .+|+++|||||++++|+..-..+.. .+..+. .+.++|++||..+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 7 7899999999999999997776643 344432 4789999999987643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=146.38 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCCChhHHHHHHHHHHHccC----CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 539 GIMLSGGQKQRIAIARALIKK----SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~----p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
...|||||+||++|||++... |+++||||||++||..+...+.+.|.++.+++|+|+|||++..+..||++++|++
T Consensus 438 ~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 438 AKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 357899999999999999875 6999999999999999999999999998889999999999999999999999998
Q ss_pred Ce
Q psy5743 615 GK 616 (644)
Q Consensus 615 G~ 616 (644)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-12 Score=125.77 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeec--ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDE--ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDE--aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
.....+||+++-++.+++..+++|+++++|| |+.++|....+.+.+++ + .++++|+++|.-..-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhHHHHHHHhccCC
Confidence 3344699999999999999999999999999 55566655555555555 2 37899999999666678999999999
Q ss_pred CeEEEe
Q psy5743 615 GKIVEI 620 (644)
Q Consensus 615 G~ive~ 620 (644)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-12 Score=139.07 Aligned_cols=164 Identities=26% Similarity=0.421 Sum_probs=114.6
Q ss_pred CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHH--H-HHHH-HHHhhccchhhhh
Q psy5743 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD--I-IHAA-KEANAYGFVIDFK 528 (644)
Q Consensus 453 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~--i-~~a~-~~a~l~~~i~~lp 528 (644)
.|..=.|.++|.+|.++..- +|+|-..|..+- +.++.+ + ...+ +.....+|+.+.-
T Consensus 410 ~~eal~v~i~g~~i~e~~~m------------------si~~~~~f~~~l--~l~~~~~~ia~~ilkei~~RL~fL~~VG 469 (935)
T COG0178 410 KPEALAVKIAGKNIAEISEM------------------SIADALEFFENL--KLSEKEKKIAEPILKEIKERLGFLVDVG 469 (935)
T ss_pred ChhhheeEECCccHHHHhhc------------------cHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 35555788999887766543 344444444321 111222 1 1111 1122234444443
Q ss_pred cCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 529 ~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
-||-|. ......|||||.|||-||+.+-.+ -=+++||||+-+|-+..-.++.+.|+++. .+.|+|+|-|+.++++.
T Consensus 470 L~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~ 548 (935)
T COG0178 470 LGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA 548 (935)
T ss_pred cCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence 444444 455679999999999999999877 46889999999998886667777777764 38999999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
||+|+-| ..|+|+.+||++|+++++++.=.+.
T Consensus 549 AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~Y 586 (935)
T COG0178 549 ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQY 586 (935)
T ss_pred cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHh
Confidence 9999999 4789999999999999765544333
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=143.46 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 540 IMLSGGQKQRIAIARALIK----KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
..+||||+||++|||++.. +|+++||||||++||..+...+.+.|.++.++.|+|+|||.++....||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3699999999999999996 689999999999999999999999999987789999999999999999999999875
Q ss_pred e
Q psy5743 616 K 616 (644)
Q Consensus 616 ~ 616 (644)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-13 Score=151.77 Aligned_cols=196 Identities=13% Similarity=0.039 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHH-----HHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHF-----NAKMDDLFELAKK 299 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~ 299 (644)
+++++++++++++.+...+..++.........+..++.+.|.+.++.+||..+.|+.+...| .+...+..+...+
T Consensus 8 ~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~ 87 (644)
T PRK10733 8 WLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVK 87 (644)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCe
Confidence 33333334433333333343444444555555677888999999999999999988777777 5555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 300 EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG---NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376 (644)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g---~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~ 376 (644)
..........+...+......+++++|+++++.|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.+
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~ 166 (644)
T PRK10733 88 VVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAE 166 (644)
T ss_pred EEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHH
Confidence 444333333344444455567788899999999999999 788888888888777 6677777788777778888888
Q ss_pred HHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 377 IMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+...+. .. .+++..++++| +.|+||+|+||||+++.+.+....
T Consensus 167 i~~~~~~~----~~---------------------------~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 167 LVEYLREP----SR---------------------------FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHHhhCH----HH---------------------------HHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 77642210 00 01112245566 999999999999999999987743
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=127.79 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEE
Q psy5743 540 IMLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
.-+|+||++++++|+.|. .+|++++||||+|.||......+.+.|... ..+.|.-| +.-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC---CCCCCCceEE
Confidence 467999999999999998 899999999999999999999898887553 23444433 3456789999
Q ss_pred EEeCCeEEEe
Q psy5743 611 VLDKGKIVEI 620 (644)
Q Consensus 611 vl~~G~ive~ 620 (644)
.+++|++...
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999988643
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-12 Score=124.77 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=43.5
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEEC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILID 462 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~id 462 (644)
+++.+|+++++++|++++|+||+|+||||+++.+.+ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 578999999999999999999999999999999999 778888886544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-08 Score=102.90 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy5743 91 SSITMAVPFALGKVIDVIYTS---DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQ 167 (644)
Q Consensus 91 ~~~~~~~p~~~~~~id~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 167 (644)
.-+.+......+.+.|.+... .+......+......++.+.++......+..|+..+.. .++|+.+-++.++.
T Consensus 105 v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~----irWR~wLT~~yl~~ 180 (409)
T PRK11098 105 VQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYV----FRWRTAMNEYYMAH 180 (409)
T ss_pred HHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 334445555566777766541 10000122333333344444444455555566555444 45555555554441
Q ss_pred ChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Q psy5743 168 ETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK-------------LALISLIIVPPV 234 (644)
Q Consensus 168 ~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-------------l~li~l~~~~l~ 234 (644)
|...++...-=+|++.|++...+........++.++++.+..+.+++.+|.. +..++++...+-
T Consensus 181 ---Wl~~r~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~G 257 (409)
T PRK11098 181 ---WQKLRHIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFG 257 (409)
T ss_pred ---HHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHH
Confidence 2222223346789999999988888788888888888888888888887865 334444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQE-KLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
..+..+.++++.++..+.++..+.....+.-.=++.+ +.| ....++|.+..+++.+...+..+.. .....
T Consensus 258 T~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~----~f~~~ 328 (409)
T PRK11098 258 TGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFN----IARIL 328 (409)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 5566778999999888888888877664433222222 112 2233444444444444433332222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 314 SGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 314 ~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
...+..+.-..+.+-....|++|.|.+......++++...++.+.+.+.++.+-....+|+.++.+.-
T Consensus 329 y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l 396 (409)
T PRK11098 329 YLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334456777899999999999999999999999999999999999999999999987643
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=117.33 Aligned_cols=157 Identities=13% Similarity=0.212 Sum_probs=91.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHH-HHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL-AMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTL-l~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+.+++++..+++ .+++|+.+.|+|++||||||| .+.+.++.++....+++..
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~--------------- 60 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST--------------- 60 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC---------------
Confidence 556666665543 278999999999999999999 6999998875444444432
Q ss_pred EEEecCCCCCcccHHHHH-hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI-~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+.. ...+.++. .+|- +.++. ... +...++ .+ ...+|+++.++-.++|.+-
T Consensus 61 -----e~~--~~~~~~~~~~~g~------~~~~~---~~~-~~l~~~---------~~---~~~~~~~~~~~~~l~~il~ 111 (230)
T PRK08533 61 -----QLT--TTEFIKQMMSLGY------DINKK---LIS-GKLLYI---------PV---YPLLSGNSEKRKFLKKLMN 111 (230)
T ss_pred -----CCC--HHHHHHHHHHhCC------chHHH---hhc-CcEEEE---------Ee---cccccChHHHHHHHHHHHH
Confidence 110 01112221 1221 11110 000 000000 01 0236777766666666554
Q ss_pred c----CCCEEEeecccCCC----CHHHHHHHHHHHHHHcC-CceEEEEccCchHHh---------hcCEEEEEe
Q psy5743 558 K----KSKILLLDEATSAL----DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR---------KSNQICVLD 613 (644)
Q Consensus 558 ~----~p~IliLDEaTSaL----D~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~---------~aD~Iivl~ 613 (644)
. +|+++++||||+.+ |+...+.+.+.++.+.+ ++|+ ++||+..... -||-|+.|+
T Consensus 112 ~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 112 TRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 3 69999999999999 66666778887776644 5555 5566654322 247777776
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=126.13 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 540 IMLSGGQKQRIAIARALIK---------KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~---------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
..+|.||+++++||.++.. +||||+||||+|.||+.....+.+.|.+. +.++++.||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999998 99999999999999999999999998764 679999999987654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-07 Score=96.70 Aligned_cols=282 Identities=12% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSD---KKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFG 162 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 162 (644)
+.+....+.+......+.+.|.+.... ++.....+......+..+.++..+......|+..+.+.+....+.+.+.+
T Consensus 25 l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~ 104 (326)
T PRK12369 25 SLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLK 104 (326)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666677778765421 00001223333334444444555556666666655554444444444444
Q ss_pred HHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q psy5743 163 SIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL------------ALISLII 230 (644)
Q Consensus 163 ~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l------------~li~l~~ 230 (644)
+-+... ...-.-=+|++.|++...+........++.++++++..+.+++.+|..+ .+++++.
T Consensus 105 ~wl~~~------~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiy 178 (326)
T PRK12369 105 FWRNKR------DNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLI 178 (326)
T ss_pred HHhcCC------CCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHH
Confidence 444321 1112223899999999888888888888888888888888888877433 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGF 310 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (644)
..+...+..+++|++.+...+.++..+.....+.-.=++-+. +.-.+...++|.+..++..+...+..+......
T Consensus 179 ai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~-- 253 (326)
T PRK12369 179 SLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLI-- 253 (326)
T ss_pred HHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Confidence 444556667788898888888888777776533221111111 211133344455554444444333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5743 311 TGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER 380 (644)
Q Consensus 311 ~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~ 380 (644)
....+..++-..+.+.....|.++.|.+......++++...+..+.+.+.++.+-....+|+.++.+.
T Consensus 254 --~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 254 --SFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333345667789999999999999999999999999999999999999999999998754
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-11 Score=127.89 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=100.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++ |..++.... ++.+.++.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC---------------
Confidence 557788999999999999999999999999999999988875 333433321 22222221110
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHH
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i 580 (644)
+.| +++-...=+++++|-.+|+++++|||.+ .+ .
T Consensus 199 ------------------------------------~~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e----~ 232 (308)
T TIGR02788 199 ------------------------------------GQG---LAKVTPKDLLQSCLRMRPDRIILGELRG---DE----A 232 (308)
T ss_pred ------------------------------------CCC---cCccCHHHHHHHHhcCCCCeEEEeccCC---HH----H
Confidence 000 1111122356677888999999999996 22 2
Q ss_pred HHHHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 581 QSAIEKLIEGK-TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 581 ~~~l~~~~~~~-TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.+.++....+. +++..+|..+.....||+..|..|++...|...+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 34444444454 569999999998889999999999999889887776
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=135.49 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=95.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIre 494 (644)
.|-.|+++. +.+..+.|+||+++||||+++.+.... +-.++| +||-+.. ..-++.+
T Consensus 316 ~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~---------------------~maq~G~~vpa~~~-~~i~~~~ 372 (782)
T PRK00409 316 VVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA---------------------LMAKSGLPIPANEP-SEIPVFK 372 (782)
T ss_pred eECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH---------------------HHHHhCCCcccCCC-ccccccc
Confidence 343444443 345679999999999999999985321 111333 3443310 0011222
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+|.. ..|.+-.+..+-+.+|+|++|+..|+|++ .+|+++|||||++++|+
T Consensus 373 ~i~~-----------------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp 422 (782)
T PRK00409 373 EIFA-----------------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDP 422 (782)
T ss_pred eEEE-----------------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCH
Confidence 2211 01233334455678999999999999999 89999999999999999
Q ss_pred HHHHHHHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 575 ENEYLVQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 575 ~~e~~i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
.....+..+ +..+. .+.++|++||..+....+.....+.++.+.
T Consensus 423 ~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 423 DEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 877666554 33332 478999999998887654333233345543
|
|
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-07 Score=95.00 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFG 162 (644)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 162 (644)
.+++.++.+.++.......+.+.+.+...+...+.. ..+.++++.+..+++.....|+....+.+....+...+.+
T Consensus 32 ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~----~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~ 107 (281)
T PF06472_consen 32 LLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWR----LLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHD 107 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777888888899887765443333 3334444555555666677777777777777777777777
Q ss_pred HHHcCChhhhhccC----hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy5743 163 SIISQETAYFDKHK----TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL-ISLIIVPPVAGL 237 (644)
Q Consensus 163 ~ll~~~~~~~~~~~----~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l-i~l~~~~l~~~~ 237 (644)
+.++-. .||.-.. .-..=+|++.|++.+-+.....+..++..++.++...+.++..++.++. ++++..++...+
T Consensus 108 ~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~ 186 (281)
T PF06472_consen 108 RYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLI 186 (281)
T ss_pred HHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 766655 5665322 3356789999999998888888888888888888888888888877777 555666667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
..++++++.+...+.++..+..........++.+.|-.++.|+.+.++..+..++..+...+....+.....+..+
T Consensus 187 ~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 187 THWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999888777766666655555544443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-11 Score=130.22 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=56.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcceEEEecC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQIGSVSQE 484 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~ 484 (644)
.+|++||+++++||.++|+||||||||||++ .|+.+|++| +|.+||+++...+..+++.-= .|.|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHh
Confidence 5799999999999999999999999999999 788888888 799999999887765543321 77775
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-11 Score=122.39 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=114.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCC----hHHHhc--ceEEEecCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELD----PMYLRS--QIGSVSQEPTLF 488 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~----~~~lr~--~i~~V~Q~~~Lf 488 (644)
.||+..++||.+|-||||-++.++|-.+|.-|.--- .|-.+..+- .+.++. ..-||-|=|..-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 479999999999999999999999999998775321 111111110 111111 112344445555
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
.|++.+++.--.+ .+...+++...++... ++ ..-..||||+-||.+||-+..++++++++|||
T Consensus 178 k~~v~~~l~~~~~------r~~~~~~~~~~~L~~~-------~~----re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLDRKDE------RDNKEEVCDQLDLNNL-------LD----REVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHhh------cccHHHHHHHHHHhhH-------HH----hhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 5666666643211 1122223333322211 22 22357999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEe
Q psy5743 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLD 613 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~ 613 (644)
.|-||......--..|+.+. +++-+|+|-|+|+.+.- .|-|.++-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999997776666777654 68999999999998853 67777764
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=139.65 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=67.2
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---C-ceEEEEccCchHHhhcC
Q psy5743 538 RGIMLSGGQKQRIAI------ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---G-KTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 538 ~G~~LSGGQkQRiaL------ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~-~TvI~IaHrl~~i~~aD 607 (644)
....|||||+||++| ||+++.+|++++|||||++||+.+...+.+.+..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999998888865332 2 48999999999999999
Q ss_pred EEEEEe
Q psy5743 608 QICVLD 613 (644)
Q Consensus 608 ~Iivl~ 613 (644)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=119.06 Aligned_cols=168 Identities=22% Similarity=0.214 Sum_probs=119.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++-++++-.|.. ...+++++ +++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3566677666653 34577874 99999999999999999999999999999999999887776332
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI- 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll- 557 (644)
-+++|.+. +.+...++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 195 -----------~ev~e~~~---------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 195 -----------REVKDFIR---------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred -----------ccHHHHHH---------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 12333332 111111111 12222445678999999999999887
Q ss_pred ------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 558 ------KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 558 ------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
.++-++++||+|...|+. +.|-..+.+.. .+.|..+-+|-.+.+.+|-+ .++|.|...++
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 678899999999999997 44554555543 46788888886566666665 37888875544
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-10 Score=129.10 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=58.2
Q ss_pred HccCCCEEEeecccCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHH----------hhcCEEEEEeCCeEEEecC
Q psy5743 556 LIKKSKILLLDEATSAL-DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI----------RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 556 ll~~p~IliLDEaTSaL-D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~aD~Iivl~~G~ive~Gt 622 (644)
+..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||+++.+ ..||++++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6888899999988764 478999999999987 4799999999999877664
|
|
| >PF13748 ABC_membrane_3: ABC transporter transmembrane region | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-07 Score=87.78 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=130.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 71 TLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQ 150 (644)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (644)
...+.+++++.....+.+..+++.++.|++.++.||.+..++. ... ..++++.++..+....|+..-.+.-.
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~----~~~----~~~~~~~l~~~~igaaRR~~DTRvf~ 74 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV----WQA----LMYAALVLLMWAIGAARRIYDTRVFS 74 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH----HHH----HHHHHHHHHHHHHhhhhHHHhhHHHH
Confidence 3457899999999999999999999999999999999987642 122 22233333333445555555555555
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230 (644)
Q Consensus 151 ~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 230 (644)
++..++-..++.+-- -++.+++.+..|++ =..++.+|+-..++.++.+++.+++..++++.++.++++..++.
T Consensus 75 rIy~~la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~ 147 (237)
T PF13748_consen 75 RIYAELAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLI 147 (237)
T ss_pred HHHHHHhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444422 25678889999996 45778899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAV 260 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (644)
+.+...+...|.++..+...+..+..++..
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV 177 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEV 177 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 888888888888777777666665554443
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=136.99 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=67.2
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQ------RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..|||||+| |+||||++..+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+.+....||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56667789999999999999999999999999999987643 57999999999999999999999
Q ss_pred eC
Q psy5743 613 DK 614 (644)
Q Consensus 613 ~~ 614 (644)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-10 Score=106.83 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=62.2
Q ss_pred CccccccCCCCCCChhHHH-----HHHHHHH-HccCCCEEEeecccCCCC---HHHHHHHHHHHHHHc-CCceEEEEccC
Q psy5743 530 GFDTIVGERGIMLSGGQKQ-----RIAIARA-LIKKSKILLLDEATSALD---AENEYLVQSAIEKLI-EGKTVLTIAHR 599 (644)
Q Consensus 530 Gl~T~ige~G~~LSGGQkQ-----RiaLARA-ll~~p~IliLDEaTSaLD---~~~e~~i~~~l~~~~-~~~TvI~IaHr 599 (644)
|....+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+.+..+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566788999999 3444444 456899999999999999 666666666665543 37899999998
Q ss_pred chH----------HhhcCEEEEEeC
Q psy5743 600 LST----------IRKSNQICVLDK 614 (644)
Q Consensus 600 l~~----------i~~aD~Iivl~~ 614 (644)
... -..||.|+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 764 355899999973
|
A related protein is found in archaea. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-10 Score=111.51 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=65.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
++|+.++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+++++. +.|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 69999999999998885 4688899999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHH
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAA 515 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~ 515 (644)
+|. +|. ..+.+.+++
T Consensus 78 ~~~-y~~------~~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGT------PRSPVEEAL 92 (205)
T ss_pred Ccc-ccC------cHHHHHHHH
Confidence 984 663 355555444
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-10 Score=109.60 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=79.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 508 (644)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++... ... ...++.|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~---~~~~i~q------------------------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HES---KRSLINQ------------------------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccC---ccceeee-------------------------
Confidence 68999999999999999999999754 56776655443211 000 0111111
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
..+|.+...++. ++++|+..+|+++++||+. |.++-..+.+ ...
T Consensus 54 ------------------------~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~ 97 (198)
T cd01131 54 ------------------------REVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAE 97 (198)
T ss_pred ------------------------cccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHH
Confidence 112222222221 4889999999999999996 6655443333 334
Q ss_pred CCceEEEEccCchHHhhcCEEEEEe
Q psy5743 589 EGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 589 ~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.+++++.++|..+.....||++.|-
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5899999999999888888887763
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-10 Score=140.22 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=69.4
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 538 RGIMLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|.++.++.++|+|||+++.+..||+++.+.
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 4468999999999999998 578899999999999999999999999988877889999999999999999997653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-10 Score=133.84 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHHHcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhc
Q psy5743 539 GIMLSGGQKQRIAIARALIK----------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKS 606 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~a 606 (644)
-.+||||+++|++||+||.. +|++|||||||++||+++...+.+.|.++. .++||++|||.++.. ..+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998864 478999999999987 558
Q ss_pred CEEEEEeCC
Q psy5743 607 NQICVLDKG 615 (644)
Q Consensus 607 D~Iivl~~G 615 (644)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=101.18 Aligned_cols=129 Identities=20% Similarity=0.163 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
.++|.|++|+||||+++.+++...+..|.|.+-+.+...-+ ..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---------------------~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---------------------LTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---------------------HHHHHhhh----------
Confidence 37899999999999999999999876666654442211100 11111000
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH----------HHH
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN----------EYL 579 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~----------e~~ 579 (644)
... ..+.+ ...+.......+.++.++++.+++...+|+++++||+++-+|... .+.
T Consensus 50 ---------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T cd01120 50 ---------SLK----GALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEE 115 (165)
T ss_pred ---------hhc----ccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHH
Confidence 000 00111 112222223345566678899999999999999999996655433 344
Q ss_pred HHHHHHHHc-CCceEEEEccCchHH
Q psy5743 580 VQSAIEKLI-EGKTVLTIAHRLSTI 603 (644)
Q Consensus 580 i~~~l~~~~-~~~TvI~IaHrl~~i 603 (644)
+.+.+.... .+.|+|+++|.....
T Consensus 116 l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 116 LRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHhcCCceEEEEEecCCcc
Confidence 444433332 388999999988654
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=113.70 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCcccc-----------ceeEEEeCCCEEEEEC
Q psy5743 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILN-----------DLSLKIQSGSMTSVIG 435 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~G~~vaIvG 435 (644)
+..+.+|++++++.++.... . + ....+.++|+||+|.||+ ++++|+ |+++.|.+||+++|||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~---~-~-e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD---D-P-EKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred ccccHhHHHHHhCCCccCCC---C-c-cccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 34578999999987654211 1 1 223467999999999985 457897 9999999999999999
Q ss_pred CCCCcHHHHHHHHhccCCCC
Q psy5743 436 SSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 436 ~SGsGKSTLl~lL~g~~~p~ 455 (644)
|+|||||||++.+.+.+...
T Consensus 176 ~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCChhHHHHHHHHhhccc
Confidence 99999999999999998653
|
Members of this family differ in the specificity of RNA binding. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=90.81 Aligned_cols=117 Identities=38% Similarity=0.447 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
+|..+.|+||+||||||+++.+++.+.... +-+.++...........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ-------------------------------- 48 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHH--------------------------------
Confidence 478899999999999999999999997765 55555552222111111
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHH---
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS--- 582 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~--- 582 (644)
.. .....+......+++.++..+++|-..+|+++++||+.+..+.........
T Consensus 49 -----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~ 104 (148)
T smart00382 49 -----LL-------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEE 104 (148)
T ss_pred -----HH-------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhh
Confidence 00 333455566788999999999999999999999999999999887765543
Q ss_pred ----HHHHHcCCceEEEEccC
Q psy5743 583 ----AIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 583 ----~l~~~~~~~TvI~IaHr 599 (644)
.......+..+|.++|.
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 105 LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hHHHHHHHhcCCCEEEEEeCC
Confidence 22233456777888873
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=103.93 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-T 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-T 491 (644)
+.+|-+|++|++++|++++|+||+|+||||+++.+....-.. -|. .+.. + +..++++ +.+|.. .
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa----~-~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPA----K-SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCc----c-ccEeccc---cEEEEecC
Confidence 357889999999999999999999999999999887653110 010 0000 0 0011111 112211 1
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
-.||+..+.. .+. .+-+|++-.=....+|++++||||.++
T Consensus 82 ~~d~~~~~~S---------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 82 ARDDIMKGES---------------------------------------TFM-VELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred cccccccCcc---------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 2222222211 000 122333211111257899999999999
Q ss_pred CCHHHHHHHHHH-HHHHcC--CceEEEEccCchHHhhc
Q psy5743 572 LDAENEYLVQSA-IEKLIE--GKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 572 LD~~~e~~i~~~-l~~~~~--~~TvI~IaHrl~~i~~a 606 (644)
.|+.....+..+ ++.+.+ +.++|++||..+.....
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 999876666666 444443 78999999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=134.90 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=74.0
Q ss_pred CccccccCCC------CCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 530 GFDTIVGERG------IMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 530 Gl~T~ige~G------~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
|++..|...| ..||||||++++||+++. ++||++|||||+++||+.+...+.+.|.++.++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 5555554333 479999999999999996 588999999999999999999999999988777899999999
Q ss_pred chHHhhcCEEEEEeC
Q psy5743 600 LSTIRKSNQICVLDK 614 (644)
Q Consensus 600 l~~i~~aD~Iivl~~ 614 (644)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999987753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-09 Score=105.72 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH
Q psy5743 540 IMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI 603 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i 603 (644)
..+|.|+||.+.|+-+++..+ .++++|||-++|++...+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999988766 99999999999999999999999988765 78999999998765
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-09 Score=124.50 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=66.6
Q ss_pred CCCChhHHH------HHHHHHHHccC-----C-CEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh
Q psy5743 540 IMLSGGQKQ------RIAIARALIKK-----S-KILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK 605 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~-----p-~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~ 605 (644)
..||||||| |+++||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+++.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999988877643 3 489999999999999
Q ss_pred cCEEEEEeCC
Q psy5743 606 SNQICVLDKG 615 (644)
Q Consensus 606 aD~Iivl~~G 615 (644)
||+++++...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999743
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-08 Score=97.10 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=88.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
-+|+|..+.|.|++|||||||...++-..-...+ .+.|+..+-.. ..+.+|.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------------~~~y~~~e~~~--~~~~~~~------- 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------------KVYVITTENTS--KSYLKQM------- 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------------EEEEEEcCCCH--HHHHHHH-------
Confidence 4899999999999999999999988532211222 44455543211 1222222
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCcccccc---CCCCCCChhHHHHHHHHHHHcc--CCCEEEeecccCCCC---HH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG---ERGIMLSGGQKQRIAIARALIK--KSKILLLDEATSALD---AE 575 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig---e~G~~LSGGQkQRiaLARAll~--~p~IliLDEaTSaLD---~~ 575 (644)
+..+++ .......|+-..+. +.....|.++++.+..++..+. +|+++++||||+.+| .+
T Consensus 73 ------------~~~g~~-~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 73 ------------ESVKID-ISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred ------------HHCCCC-hhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 222210 00000111111100 1223456789999999999997 899999999996544 33
Q ss_pred HHHHHHHHHHHH-cCCceEEEEccCchH--------HhhcCEEEEEeC
Q psy5743 576 NEYLVQSAIEKL-IEGKTVLTIAHRLST--------IRKSNQICVLDK 614 (644)
Q Consensus 576 ~e~~i~~~l~~~-~~~~TvI~IaHrl~~--------i~~aD~Iivl~~ 614 (644)
.-..+.+.+..+ ..+.|+++++|.... ..-+|-++.|+.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 334444445442 247899999997653 234577777763
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=110.40 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.6
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC---CccCCCCChHH
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID---GVDIKELDPMY 473 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~~~~~~ 473 (644)
.+.++.++++..|.. ...+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 346899999999974 356888886 999999999999999999999999999999999999885 67777665544
Q ss_pred H----hcceEEEecCCC
Q psy5743 474 L----RSQIGSVSQEPT 486 (644)
Q Consensus 474 l----r~~i~~V~Q~~~ 486 (644)
+ ++.|++|+|...
T Consensus 214 l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 214 LADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhhCCeEEEEEcCCC
Confidence 3 357999999754
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=122.46 Aligned_cols=75 Identities=32% Similarity=0.337 Sum_probs=64.2
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc-CE
Q psy5743 539 GIMLSGGQKQRIAIARALIK--------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQ 608 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~--------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a-D~ 608 (644)
-..|||||+||++|||||.. +|++|||||||++||+.+-..+.+.|..+. .|+||++|||-....... .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999985 899999999999999999999999998874 579999999977766443 45
Q ss_pred EEEEe
Q psy5743 609 ICVLD 613 (644)
Q Consensus 609 Iivl~ 613 (644)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 55544
|
|
| >PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00015 Score=73.73 Aligned_cols=238 Identities=13% Similarity=0.043 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRST 206 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~ 206 (644)
++.+.+...++..+..+....... ++|..+-+-.++. |-..++.-.--+|+..|+.+....+-.....++.++
T Consensus 62 f~~ia~~~v~~~v~~~ff~shyiF----rWR~Am~~yY~~~---W~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~si 134 (315)
T PF05992_consen 62 FLWIAMIYVVLAVLNSFFVSHYIF----RWRTAMNEYYMSH---WPKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSI 134 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHH---HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444455444434 5555554444332 333356666688999999998888877888888888
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q psy5743 207 VMVSAGVSMMFIISSKLA-------------LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTV 273 (644)
Q Consensus 207 ~~~i~~~~~l~~~~~~l~-------------li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~I 273 (644)
.+.+..+-+++.+|..+. .++++...+-.++..+.+.++..+..+.++..+...+ |.+-|=..
T Consensus 135 mtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~- 210 (315)
T PF05992_consen 135 MTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD- 210 (315)
T ss_pred HHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-
Confidence 888877777776554332 2223333334455566677887777777777777666 33322222
Q ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHH
Q psy5743 274 KSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGIS 353 (644)
Q Consensus 274 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~ 353 (644)
.-....+...+.|.+...++++........+.......++. .+....+-+-.+..|.+|+|.+......++++..+
T Consensus 211 ~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~----~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~s 286 (315)
T PF05992_consen 211 ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISYLQFD----VIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSS 286 (315)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 22233344455666666666666655555544443333322 22222333455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5743 354 IGGLSNFYSELNKGLGACHRLWEIME 379 (644)
Q Consensus 354 l~~l~~~~~~~~~~~~s~~Rl~~~l~ 379 (644)
++.+.+.+..+.+-....+|+.++-.
T Consensus 287 fq~lv~~W~tivEL~Si~kRL~~FE~ 312 (315)
T PF05992_consen 287 FQYLVNSWTTIVELRSIYKRLRAFEA 312 (315)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743
|
meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-08 Score=107.97 Aligned_cols=135 Identities=20% Similarity=0.191 Sum_probs=91.9
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-... ..++++.+++|++++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhh
Confidence 35667777889999999999999999999999999999999999987554332 335689999999999998888888
Q ss_pred hcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCcc--ccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 497 LYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFD--TIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 497 ~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~--T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
.+.++... .....++.+.++.|..++-.-.-..|-. --+-+ .+|| ++|...-+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~--~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIEN--GELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHc--CCCC---HHHHHHHHHHHHH
Confidence 88754200 0112345555555544332211111111 11111 3354 7888888888765
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=87.59 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=64.3
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
..|-|+-=-=-+.|.+ .+..|+|||||-|+|-+..+-.+...|+++.+ +.-+|+.||.+=.+.. --.|+-++.+.+
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 3488886655556665 45689999999999999999999999988754 6789999999877644 357888888774
Q ss_pred EecChhHH
Q psy5743 619 EIGSYAHL 626 (644)
Q Consensus 619 e~Gt~~eL 626 (644)
+.-+|+|.
T Consensus 207 ~~~~fe~t 214 (233)
T COG3910 207 EERDFEET 214 (233)
T ss_pred cccchHHH
Confidence 44566654
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-07 Score=107.33 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHHHHccCCCEEEeecccCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 552 IARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaL-D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
++|++..+|+++++|||++.| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 6888889988887764 47899999999998764
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-08 Score=94.39 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=58.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCC--C-cccHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL--F-SGTIY 493 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L--f-~gTIr 493 (644)
..+=+.+.+++|+.++|+||+|||||||++.|+|+++|+.|.|.+.+.+--.+. .+..++++.|.+.. + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455667789999999999999999999999999999999999999774433321 24557777665532 2 24666
Q ss_pred HHHh
Q psy5743 494 ENIL 497 (644)
Q Consensus 494 eNI~ 497 (644)
+++.
T Consensus 91 ~~l~ 94 (186)
T cd01130 91 DLLR 94 (186)
T ss_pred HHHH
Confidence 6654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-07 Score=96.97 Aligned_cols=172 Identities=24% Similarity=0.336 Sum_probs=116.7
Q ss_pred EEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-ccCCCCCcEEEECCccCCCCChHHHhcceEEEec
Q psy5743 405 IRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483 (644)
Q Consensus 405 vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q 483 (644)
|+|.-|.. . .+.+ +-||+| .+.|||..=-|||||++.|. |-|+..-| || |..+-..+.
T Consensus 227 ve~~LP~~-g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DG-----------RE~VVT~~~ 285 (448)
T PF09818_consen 227 VEIELPNG-G--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DG-----------REFVVTDPD 285 (448)
T ss_pred EEEECCCC-C--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CC-----------ceEEEECCC
Confidence 66777642 1 2444 568899 99999999999999999885 67765444 44 112211111
Q ss_pred CCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 484 ~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
-..+- .+| - ...+.+.+..||.+||.|.||. --.=.+=||---|=-.|..||-..+++|
T Consensus 286 avkir-----------AED------G---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~L 344 (448)
T PF09818_consen 286 AVKIR-----------AED------G---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLL 344 (448)
T ss_pred ceEEE-----------ecC------C---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEE
Confidence 11100 011 1 1345677889999999999987 3333467999999999999999999999
Q ss_pred EeecccCCC-----CHHHHHHH----------HHHHHHHc--CCc-eEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 564 LLDEATSAL-----DAENEYLV----------QSAIEKLI--EGK-TVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 564 iLDEaTSaL-----D~~~e~~i----------~~~l~~~~--~~~-TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
++||=|||- |..-++.| .+.+++++ .+. |++++.---..+..||+|++|++=+..
T Consensus 345 LiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 345 LIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred EEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 999999996 55555555 22333332 244 555555555678999999999986643
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=95.54 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=35.7
Q ss_pred HHccCCCEEEeecccCC------CCHHHHHHHHHHHHHHcC--CceEEEEccCc
Q psy5743 555 ALIKKSKILLLDEATSA------LDAENEYLVQSAIEKLIE--GKTVLTIAHRL 600 (644)
Q Consensus 555 All~~p~IliLDEaTSa------LD~~~e~~i~~~l~~~~~--~~TvI~IaHrl 600 (644)
+..++|+++|+| |+++ .|+..-..+.+.|.++.+ +.|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7654 688877788888877643 78999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=100.35 Aligned_cols=123 Identities=23% Similarity=0.258 Sum_probs=81.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
.+++..+.|+||+||||||+++.+++.+++ .+|.|..-+.++.-.. ......+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~----~~~~~~i---------------------- 172 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH----RNKRSLI---------------------- 172 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc----cCccceE----------------------
Confidence 467999999999999999999999998764 4677765443221100 0000000
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~ 583 (644)
.+..+|..+.. --=++++||-.+||++++||++ |.++.....++
T Consensus 173 ---------------------------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a 216 (343)
T TIGR01420 173 ---------------------------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA 216 (343)
T ss_pred ---------------------------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH
Confidence 01122222111 1235788999999999999997 88877654443
Q ss_pred HHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 584 IEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 584 l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
...|.+++...|..+.....||++-|
T Consensus 217 ---a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 ---AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred ---HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 34589999999998877766666543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-08 Score=105.01 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=65.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHH------hcceEEEecCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYL------RSQIGSVSQEP 485 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~l------r~~i~~V~Q~~ 485 (644)
..+++++ +++.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.++.++..+.+ |+.+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3579999 9999999999999999999999999999999886 445556666666554544 55799999998
Q ss_pred CCCc-ccHHHHHh
Q psy5743 486 TLFS-GTIYENIL 497 (644)
Q Consensus 486 ~Lf~-gTIreNI~ 497 (644)
..+. -+..+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7664 46666765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-07 Score=103.11 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=91.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
.+..+++|+++++|||+|+||||++..|++.+.+..|.. .|++|++|+ |.-+..||+.+..
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~A 309 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIYG 309 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHHH
Confidence 344456799999999999999999999999987776642 688999998 5666788887532
Q ss_pred C-----CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH-HHHHHHHHHccCC-----CEEEeeccc
Q psy5743 501 N-----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK-QRIAIARALIKKS-----KILLLDEAT 569 (644)
Q Consensus 501 ~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk-QRiaLARAll~~p-----~IliLDEaT 569 (644)
. -....+..+. ..... .+.+.....|..-|.+ |+ ..+.-+.+++.++ .+|+||..|
T Consensus 310 eilGVpv~~~~~~~Dl--~~aL~-------~L~d~d~VLIDTaGr~----~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 310 KILGVPVHAVKDAADL--RLALS-------ELRNKHIVLIDTIGMS----QRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHhCCCeeccCCchhH--HHHHH-------hccCCCeEEeCCCCcC----hhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 1 1000112222 22222 2333334445443322 21 1223333344443 689999888
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH----------hhcCEEEEEeCCeEE
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI----------RKSNQICVLDKGKIV 618 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i----------~~aD~Iivl~~G~iv 618 (644)
..-|... +.+.... .+.+-+++|+=-++. +.-=-|..+..|+=|
T Consensus 377 ~~~~l~~---i~~~f~~--~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 377 HGDTLNE---VVQAYRG--PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred cHHHHHH---HHHHhcc--CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 7633221 2222222 256778888743331 112346677777644
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=97.98 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=68.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC--C-CcEEEECCccCCCCChHHHhcceEEEecCC-----CCCcccHHHHHh
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP--Q-NGKILIDGVDIKELDPMYLRSQIGSVSQEP-----TLFSGTIYENIL 497 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-----~Lf~gTIreNI~ 497 (644)
++|..++|+||+||||||+++.|++++.+ . .+.|.....|+ ++..+.+++..++|.|.. .-|..+|++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 2 34676666666 477777777778888864 368899999888
Q ss_pred cCCCCCC---CC-CHHHHHHHHHHHh
Q psy5743 498 YGVNDSS---SV-TKSDIIHAAKEAN 519 (644)
Q Consensus 498 ~g~~~~~---~~-~~~~i~~a~~~a~ 519 (644)
. +||.- +. |.|.+..+++.+.
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEAAL 235 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHHHH
Confidence 6 46520 23 3444556777643
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-07 Score=89.76 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH-----HhcCCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN-----ILYGVNDSS 504 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN-----I~~g~~~~~ 504 (644)
.++|+|+||||||||++.|.+++ ..|. +.++++|.+...-+.+++ ..++.|+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~-------------------~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~-- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK-------------------VVIISQDSYYKDLSHEELEERKNNNYDHPD-- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC-------------------eEEEEecccccccccccHHHhccCCCCCCC--
Confidence 48999999999999999999998 2233 344444444432222221 1223232
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
..+.+.+.+.+......+. +.-...+.|.|++++-.+ ...+++++|+|++++..++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2344444444444433222 122233566666665444 5678999999999998875
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-07 Score=88.96 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=69.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC---cccHHHHHhcCCCCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF---SGTIYENILYGVNDSSSV 506 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf---~gTIreNI~~g~~~~~~~ 506 (644)
+++|+|++|||||||++.+++.+.+..| +.+-..|........|....++++|+..+. +|.+... .
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~ 71 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTA----------I 71 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccce----------e
Confidence 6899999999999999999999988655 555556776666777777889999987652 1222111 1
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+- +.....+.+++.++|.+..+.|+-.|.++|.-.
T Consensus 72 ~~~~---~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 72 REDA---SMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred ccCH---HHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1111 112333344555667777788888887777665
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-07 Score=88.99 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-ceEEEecCCC-CCcccHHHHHh
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-QIGSVSQEPT-LFSGTIYENIL 497 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~i~~V~Q~~~-Lf~gTIreNI~ 497 (644)
+|+.++|+|+||||||||++.|.|++.| +.++|.++.. ...+|+ ..++.+|+.. +..-+..+|++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999987 6899988743 334444 3556666643 22334444544
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-07 Score=99.43 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=60.4
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHHh----cceEEEecC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYLR----SQIGSVSQE 484 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr----~~i~~V~Q~ 484 (644)
..+++++ +++.+||+++|+|+||+|||||++.|.+..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 3689999 9999999999999999999999999999999988 9999999999988776665 456666543
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-07 Score=91.83 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=36.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g 490 (644)
|+|+.++|+|+||||||||++.|.+++++ ..+++++||.++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 57999999999999999999999999864 156677777776643
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-07 Score=89.05 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~ 485 (644)
.|+.++|+||||||||||++.|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3889999999999999999999999876 5888888888776677778888888873
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-07 Score=88.99 Aligned_cols=78 Identities=32% Similarity=0.393 Sum_probs=57.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
|++++|+||||||||||++.|.+.++ |..|+ ++|++..-++.+.+.+.+ +++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 34444 366666666666666553 57788888888888
Q ss_pred HhcCCCCCCCCCHHHHHHHHHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKE 517 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~ 517 (644)
. +| ...+.+.++++.
T Consensus 76 ~-y~------~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG------TPKSPVEEALAA 90 (180)
T ss_pred e-eC------CcHHHHHHHHHC
Confidence 4 66 445666666543
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.8e-06 Score=96.11 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=41.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
-+|+.+.++..++|+|+||||||||++.|++.+....++|.+-+.+-
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~ 484 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDR 484 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCc
Confidence 45788888999999999999999999999999888888888766543
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-07 Score=104.12 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=90.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hccCCCCCcEEEECCccCCCCChHHHhcc---eEEEecCCCCCcccHHHHHhc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLL--LRLYDPQNGKILIDGVDIKELDPMYLRSQ---IGSVSQEPTLFSGTIYENILY 498 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL--~g~~~p~~G~I~idg~~i~~~~~~~lr~~---i~~V~Q~~~Lf~gTIreNI~~ 498 (644)
=+++|..+.|.|++|||||||..-. .|.-++-+.-+++... -++++++++ +|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999976 3555545667777652 244444443 3333222110 011111
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH--HHHccCCCEEEeecccCCCCHHH
Q psy5743 499 GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA--RALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 499 g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA--RAll~~p~IliLDEaTSaLD~~~ 576 (644)
-+.. ........++..++ +..+......+|+||+||+.|+ .++..+|+.. ...
T Consensus 88 ~~~~----~~~~~~~~~~~~~l-----------~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~ 142 (484)
T TIGR02655 88 LDAS----PDPEGQDVVGGFDL-----------SALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVV 142 (484)
T ss_pred EecC----chhccccccccCCH-----------HHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHH
Confidence 1100 00000011111222 2222333357899999999999 6776665443 345
Q ss_pred HHHHHHHHHHHc-CCceEEEEccCchHH----------hhcCEEEEEe
Q psy5743 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTI----------RKSNQICVLD 613 (644)
Q Consensus 577 e~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~aD~Iivl~ 613 (644)
.+.+.+.++.+. .++|+|+++|..+.. --||.|+.|+
T Consensus 143 r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 143 RREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 556666665543 489999999987531 2469999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-07 Score=96.51 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=53.9
Q ss_pred CccccceeEEE---eCCCE-----EEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHhc
Q psy5743 415 AVILNDLSLKI---QSGSM-----TSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 415 ~~vL~~isl~i---~~G~~-----vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~ 476 (644)
..+++++++.+ ++|+. ++|+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 36788999988 67887 9999999999999999999999875 688999999988777777765
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-07 Score=84.17 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=52.7
Q ss_pred EEEECCCCCcHHHHHHHHhccCCC-------------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYDP-------------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~p-------------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
++|+||||||||||++.|++.+++ ..|+ ++|++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999754 4455 48888888888888764 678888998999988 5
Q ss_pred cCC
Q psy5743 498 YGV 500 (644)
Q Consensus 498 ~g~ 500 (644)
+|.
T Consensus 76 yg~ 78 (137)
T cd00071 76 YGT 78 (137)
T ss_pred ecC
Confidence 774
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-06 Score=85.25 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=40.4
Q ss_pred cccCCCCCCChhHHHHHH--HHHHHcc-CCCEEEeecccCCCCHHHHHHHHHHHHHHcCC
Q psy5743 534 IVGERGIMLSGGQKQRIA--IARALIK-KSKILLLDEATSALDAENEYLVQSAIEKLIEG 590 (644)
Q Consensus 534 ~ige~G~~LSGGQkQRia--LARAll~-~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~ 590 (644)
.++.....+|+||+|++. +++.+-. +++++ |||++|.++-..+.+.|.+..++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445556678999999987 6677654 34443 99999999999999999887654
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=91.06 Aligned_cols=176 Identities=20% Similarity=0.179 Sum_probs=110.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HH-----HhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY-----LRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~-----lr~~i~~V~Q~~~ 486 (644)
..+++++ +++.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++.. +. +++.+.++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~-- 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS-- 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC--
Confidence 4689999 9999999999999999999999999999999999887776654443321 11 11222222221
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQRIAIARALIKKSKILLL 565 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQRiaLARAll~~p~IliL 565 (644)
.+..-++...+.-...+.|+..+ +|+|-.+= +.=.+ .|+|+=-= =+.+
T Consensus 228 -----------------d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~REi--sl~~ 276 (440)
T TIGR01026 228 -----------------DQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQREI--GLAA 276 (440)
T ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHHHHH--HHhc
Confidence 11233444444444444455543 46665332 22221 22222000 0112
Q ss_pred ecc--cCCCCHHHHHHHHHHHHHHcC-Cc-------eEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 566 DEA--TSALDAENEYLVQSAIEKLIE-GK-------TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 566 DEa--TSaLD~~~e~~i~~~l~~~~~-~~-------TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|| +.+.|+..-..+.+.+++... ++ |+++-+|++ +=.-+|.+.-+.||+|+-.++-++
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhh
Confidence 443 568999888888777766543 46 888889998 445789999999999997776544
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=83.50 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCChHHHh-----cceEEEecCCCCCcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELDPMYLR-----SQIGSVSQEPTLFSG 490 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~~~~lr-----~~i~~V~Q~~~Lf~g 490 (644)
|+.++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+++. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999998654 65544 77777777776664 348888888655554
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=108.01 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q psy5743 538 RGIMLSGGQKQRIA----IARA--------LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600 (644)
Q Consensus 538 ~G~~LSGGQkQRia----LARA--------ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl 600 (644)
....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 35789999999996 6866 44699999999999999999999999999988 89999999875
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.5e-06 Score=74.27 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc------CCceEEEEccCch
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLS 601 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~------~~~TvI~IaHrl~ 601 (644)
++.....++...++.++++||+-.. +......+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999997654 5556667777776653 4667888888654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=104.98 Aligned_cols=44 Identities=32% Similarity=0.410 Sum_probs=37.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-CCCCcEEEECC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-DPQNGKILIDG 463 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~idg 463 (644)
-+++..++++.++|+|++|+|||||++.+.+.. ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 356777889999999999999999999995544 45689999986
|
syringae 6; Provisional |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=102.63 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=66.8
Q ss_pred CCCCCChhHHHHHHH------HHHHccC--CCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCE
Q psy5743 538 RGIMLSGGQKQRIAI------ARALIKK--SKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 538 ~G~~LSGGQkQRiaL------ARAll~~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~ 608 (644)
.-..|||||+=.++| |..+-.+ -+.++|||||.+||+++-..+.++|.++.. +++||||||..+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 346899999886555 4555566 699999999999999999999999988765 5999999999999999999
Q ss_pred EEEEeCC
Q psy5743 609 ICVLDKG 615 (644)
Q Consensus 609 Iivl~~G 615 (644)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9998753
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=85.18 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=51.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc---cH--HHHHhcCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG---TI--YENILYGV 500 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---TI--reNI~~g~ 500 (644)
+++..|+|+|+||||||||++.|.+.++ ...+++++||++.++. +. +.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999872 1268889999988755 23 34455555
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q psy5743 501 NDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~ 519 (644)
|+ ..+.+.+.+.++...
T Consensus 63 ~~--~~~~~~l~~~l~~l~ 79 (209)
T PRK05480 63 PD--AFDHDLLIEHLKALK 79 (209)
T ss_pred cc--cccHHHHHHHHHHHH
Confidence 53 356667766665554
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-06 Score=84.62 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=40.2
Q ss_pred EEEEEEEEcCCCCCC---ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 401 DFNNIRFSYPSRPDA---VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.+++..|++....++ ..|.+++| +++|+.+.|+||+|+|||||+.+|......
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 455666666533222 23778888 999999999999999999999999766543
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-06 Score=93.88 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEE---CCccCCCCChHHHh---cceEEE-----ec
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILI---DGVDIKELDPMYLR---SQIGSV-----SQ 483 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i---dg~~i~~~~~~~lr---~~i~~V-----~Q 483 (644)
.+++++ |++.+||+++|+|+||||||||++.|+|+.++ ..|.|.+ +|.++.++..+.++ ...++| .|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999999854 4466666 55788777666665 235555 88
Q ss_pred CCC------CCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhh
Q psy5743 484 EPT------LFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANA 520 (644)
Q Consensus 484 ~~~------Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l 520 (644)
+|. ....+|.|.+..-..+. ..-+..+..++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 653 34556888886432210 01135566677777776
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=85.16 Aligned_cols=72 Identities=26% Similarity=0.337 Sum_probs=48.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc-CCC------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDP------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
=+++|+++.|+|++|||||||+.-++.. ..| ..+.+++++.+ ..+++.+.+.. |..-....++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 3889999999999999999999988633 334 37889999865 33444443321 11111234677788
Q ss_pred hcCCC
Q psy5743 497 LYGVN 501 (644)
Q Consensus 497 ~~g~~ 501 (644)
.+.++
T Consensus 89 ~~~~~ 93 (235)
T cd01123 89 YVARA 93 (235)
T ss_pred EEEec
Confidence 77654
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=92.95 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=50.6
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCC-------EEEEECCCCCcHHHHHHHHhccC
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGS-------MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~-------~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
...|.+++++++|+||. .++.++++++++++|+ +++|+|++|+|||||++.|.|.-
T Consensus 14 ~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45678999999999993 4679999999999999 99999999999999999998864
|
|
| >COG3044 Predicted ATPase of the ABC class [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=82.06 Aligned_cols=153 Identities=24% Similarity=0.276 Sum_probs=106.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccC-CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
-+-|++| +++|+|++=-|||||+..+.+=. +.--| ||.. .+
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE-----------~v---------------------- 278 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRE-----------RV---------------------- 278 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCce-----------EE----------------------
Confidence 3568899 99999999999999999997533 22112 2311 10
Q ss_pred CCCCCCCHHHHHH-------HHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 501 NDSSSVTKSDIIH-------AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 501 ~~~~~~~~~~i~~-------a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
+++....+ +..-..+.-||+.||+|-||+---.| .=||--+|=-.|=||+=...+++++||-|||..
T Consensus 279 -----VTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtN 352 (554)
T COG3044 279 -----VTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATN 352 (554)
T ss_pred -----EehhhhhhhhcccceeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhh
Confidence 11111111 11223345689999999999876655 359999999999999999999999999999974
Q ss_pred HH----------HH---HHHHHHHHHHcCC-ceEEEEccCchH-HhhcCEEEEEeCCeEE
Q psy5743 574 AE----------NE---YLVQSAIEKLIEG-KTVLTIAHRLST-IRKSNQICVLDKGKIV 618 (644)
Q Consensus 574 ~~----------~e---~~i~~~l~~~~~~-~TvI~IaHrl~~-i~~aD~Iivl~~G~iv 618 (644)
-- .+ ..+.+-+.++..+ -++|+||--+.. +..+|+++||+|-+-.
T Consensus 353 llvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 353 LLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred eehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 31 22 2334444444443 788999888775 5789999999997755
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 644 | ||||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 0.0 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-88 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-88 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-82 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-73 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-72 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-72 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-71 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-70 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-61 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-59 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-59 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-59 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-59 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-59 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-58 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-58 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-51 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-50 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-49 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-48 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-47 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-47 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-45 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-25 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-25 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-24 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-24 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-23 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-23 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-23 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-22 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-21 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-21 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-21 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-21 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-21 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-21 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-21 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-20 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-20 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-20 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-20 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-20 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-20 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-20 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-19 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-19 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-19 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-18 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-18 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-18 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-16 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-16 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 8e-16 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-15 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-15 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-15 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-15 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-15 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-11 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-10 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-10 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-10 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-10 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-08 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-07 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-07 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-05 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 3e-05 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 4e-05 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 4e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 4e-05 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 4e-04 |
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 587 bits (1516), Expect = 0.0
Identities = 171/564 (30%), Positives = 303/564 (53%), Gaps = 8/564 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
++L+ K L A L+++++ + L ++D + + + + + L
Sbjct: 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 69
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + ++ ++ Y ++ + + +R RLFG ++ A+FDK TG L++RI+
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 129
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ + + +R + MMF S +L++I +++ P V+ V K
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 189
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
R I++N+Q+ + AE+ + + V F +++E F+ + + K A
Sbjct: 190 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ L + + VLY +++T G ++ + + L+N ++
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
+G+ AC L+ I++ E GK G+++F N+ F+YP R + L +++LKI
Sbjct: 310 RGMAACQTLFAILDSEQEKDE--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKI 366
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
+G +++G SGSGKST+A L+ R YD G IL+DG D++E LR+Q+ VSQ
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
LF+ T+ NI Y + ++ I AA+ A A F+ NG DTI+GE G++LSGG
Sbjct: 427 HLFNDTVANNIAYARTE--EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
Q+QRIAIARAL++ S IL+LDEATSALD E+E +Q+A+++L + +T L IAHRLSTI +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 606 SNQICVLDKGKIVEIGSYAHLIKN 629
+++I V++ G IVE G+++ L+
Sbjct: 545 ADEIVVVEDGIIVERGTHSELLAQ 568
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 569 bits (1470), Expect = 0.0
Identities = 166/564 (29%), Positives = 301/564 (53%), Gaps = 8/564 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
K+L+T + K L + L+++++ + L ++D + + + + L
Sbjct: 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPF 69
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + V F Y ++ + ++ ++R RLF + +FD+ TG L++RI+
Sbjct: 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRIT 129
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ ++ + +R + +++MF S +L+L+ +++ P VA K
Sbjct: 130 YDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF 189
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
RKI+RN+Q + + AE+ + + V S+ +++E F+ + + + K A+
Sbjct: 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ + + + +VL+ V +T G + + + L++ SE
Sbjct: 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
+G+ AC L+ +M+ E GK+ + + GE+D ++ F+Y + + L+ +S I
Sbjct: 310 RGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSI 366
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
G +++G SGSGKST+A L R YD +G I +DG D+++ LR VSQ
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
LF+ TI NI Y T+ I AA++A+A F+ + G DT++GE G LSGG
Sbjct: 427 HLFNDTIANNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
Q+QR+AIARAL++ + +L+LDEATSALD E+E +Q+A+++L + KTVL IAHRLSTI +
Sbjct: 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
Query: 606 SNQICVLDKGKIVEIGSYAHLIKN 629
+++I V+D+G+I+E G +A L+
Sbjct: 545 ADEILVVDEGEIIERGRHADLLAQ 568
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 561 bits (1447), Expect = 0.0
Identities = 172/568 (30%), Positives = 292/568 (51%), Gaps = 8/568 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYT----SDKKEMKEKMT 121
+K+ K K ++ + + ++ I M +P + ID + + +++
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 122 SLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
++ + L + +V F R YL ++ I +R++L+ + + ++ ++ G++I
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVY 241
+R+ D + + + + + +S+MF + KL L +L I P V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+RK+TR LA ER+ I VKSF+ E E +F+ K + A K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
F + + V+ G + +ITVG L++F+ Y + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 362 SELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDL 421
+ L + + R++++++ + I G +G ID +++ F Y + L D+
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-LKDI 360
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
+L I+ G + +G SG GKSTL L+ R YD +G+ILIDG +IK+ LR+QIG V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
Q+ LFS T+ ENIL G T +++ AAK ANA+ F+++ G+DT VGERG+
Sbjct: 421 QQDNILFSDTVKENILLGRPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQR++IAR + IL+LDEATSALD E+E ++Q A++ L + +T L +AHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKN 629
TI +++I V++ G IVE G++ LI
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK 565
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 580 bits (1498), Expect = 0.0
Identities = 187/630 (29%), Positives = 327/630 (51%), Gaps = 6/630 (0%)
Query: 19 NKSLAFKIISHKPFSKWKLQNNEKIISRYYTSTPNNQKVGTKIKKSELKKLFTLAKSEKR 78
N ++ K + + + + + + + ++ L +E
Sbjct: 646 NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWP 705
Query: 79 KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKE-MKEKMTSLSLLLMLVFVVGACC 137
+ +++ + A KV+ V E ++ SLL +++ ++
Sbjct: 706 YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFIT 765
Query: 138 NFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCV 195
F + + + + +TK+LR +F S++ Q+ ++FD K+ TG L R++ D + V
Sbjct: 766 FFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAT 825
Query: 196 TQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255
++ ++ + G+ + I +L L+ L IVP +A +V K + + +
Sbjct: 826 GSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKE 885
Query: 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSG 315
L + ++A E I N RTV S ++E+ + + + + A K+A G+ F FT
Sbjct: 886 LEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMM 945
Query: 316 NAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375
+ +G +V+ + +T N+ + +++G +S+F + K + +
Sbjct: 946 YFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHII 1005
Query: 376 EIMEREPLI-STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434
I+E+ P I S S + L+G + F+ + F+YP+RP +L LSL+++ G +++
Sbjct: 1006 RIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494
GSSG GKST+ LL R YDP G + +DG +IK+L+ +LR+Q+G VSQEP LF +I E
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
NI YG N V+ +I+ AAKEAN + F+ + ++T VG++G LSGGQKQRIAIAR
Sbjct: 1126 NIAYGDNSRV-VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
AL+++ ILLLDEATSALD E+E +VQ A++K EG+T + IAHRLSTI+ ++ I V+
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQN 1244
Query: 615 GKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
GK+ E G++ L+ ++ ++ Q
Sbjct: 1245 GKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 200/542 (36%), Positives = 305/542 (56%), Gaps = 9/542 (1%)
Query: 106 DVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165
+ + +++E+MT+ + + + +V ++A K+R++ F +I+
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 166 SQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL 225
+QE +FD H GEL R++ D S +++ + I ++ G + F KL L
Sbjct: 153 NQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212
Query: 226 ISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSH 285
+ L I P + A ++ K + T A A VAEE ++ IRTV +F +K E+
Sbjct: 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELER 272
Query: 286 FNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLL 345
+N +++ L K+A+ + G L A +YG +V + ++G + +
Sbjct: 273 YNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 346 YAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI---STSGGKFFSHSLKGEIDF 402
S+G S GA + +++I++ +P I S SG K +++G ++F
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEF 390
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
NI FSYPSR + IL L+LK++SG +++G+SG GKST L+ RLYDP +G + ID
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G DI+ ++ YLR IG VSQEP LF+ TI ENI YG D VT +I A KEANAY
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYD 507
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
F++ + FDT+VGERG LSGGQKQRIAIARAL++ KILLLDEATSALD E+E +VQ+
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
A++K EG+T + IAHRLST+R ++ I D G IVE G++ L++ ++ KL+ QT
Sbjct: 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626
Query: 643 MD 644
Sbjct: 627 AG 628
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 469 bits (1210), Expect = e-159
Identities = 175/577 (30%), Positives = 304/577 (52%), Gaps = 9/577 (1%)
Query: 52 PNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS 111
P +K K + L++L + L + VSS + + P+ +GK IDV++
Sbjct: 11 PILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVP 70
Query: 112 DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAY 171
+ + + L+L ++ + + + + +M +Q + +LR+ LF + +
Sbjct: 71 RRFD---LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF 127
Query: 172 FDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231
FD+ G++I+R+ D ++ + +I V ++ V MMF ++ L+L++L IV
Sbjct: 128 FDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIV 187
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291
P + + RK Q L + EE IS + +K F++E+ EM F+ +
Sbjct: 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE 247
Query: 292 DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIG 351
L ++ K + GV + N + +GG + + ITVG +++F+ Y+
Sbjct: 248 SLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFT 307
Query: 352 ISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPS 411
+ LSN ++ + L + R++EI++ E ++GEI+F N+ FSY
Sbjct: 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE-VRGEIEFKNVWFSY-- 364
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+L D++ I+ G +++G +GSGK+T+ LL+R YD G+IL+DG+DI+++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
LRS IG V Q+ LFS T+ EN+ YG T +I AAK ++ F+ G+
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPG---ATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
+T++ + G LS GQ+Q +AI RA + KIL+LDEATS +D + E +Q+A+ KL+EGK
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
T + IAHRL+TI+ ++ I VL G+IVE+G + LI+
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-145
Identities = 152/565 (26%), Positives = 285/565 (50%), Gaps = 9/565 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVID-VIYTSDKKEMKEKMTSLS 124
K L K A ++V ++ P L +++D I D +
Sbjct: 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTG 66
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+L+++V ++GA G + ++Q+ LR LF ++S + ++ T LI R+
Sbjct: 67 ILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRL 126
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
+ D + + V + +R+ ++ G+ M I+ KL+ + + ++PP+ L + K
Sbjct: 127 TNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKK 186
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
+ R +Q+ +V E + +R V++F +E+ E +F + L
Sbjct: 187 GNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
N +++VL++GGV+V + +G++ ++ Y I S+ + N + +
Sbjct: 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFI 306
Query: 365 NKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
+ + R+ E++ +P I + +++G + F N+ F Y D V L+ ++
Sbjct: 307 VRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-LSGVNFS 365
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484
++ GS+ +V+G +GSGKSTL L+ RL DP+ G++ +D +D++ + LR I +V QE
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544
LFSGTI EN+ +G D T +I+ AAK A + F+I G+D+ V G SG
Sbjct: 426 TVLFSGTIKENLKWGRED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482
Query: 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604
GQKQR++IARAL+KK K+L+LD+ TS++D E + +++ +G T I ++ T
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 605 KSNQICVLDKGKIVEIGSYAHLIKN 629
+++I VL +GK+ G++ L+++
Sbjct: 543 LADKILVLHEGKVAGFGTHKELLEH 567
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-140
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 5/263 (1%)
Query: 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKST 443
+S G ++KG + F ++ F+YP+ P+ +L L+ + G +T+++G +GSGKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503
+A LL LY P GK+L+DG + + D YL +Q+ +V QEP LF + ENI YG+
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR- 119
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
+ T +I A E+ A+ F+ F G+DT VGE G LSGGQ+Q +A+ARALI+K ++L
Sbjct: 120 -TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+LD ATSALDA N+ VQ + + E +TVL I +LS +++ I L +G + E G
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 622 SYAHLIKNPNSMFNKLMKYQTMD 644
++ L++ + +++
Sbjct: 239 THLQLMER-GGCYRSMVEALAAP 260
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-130
Identities = 112/249 (44%), Positives = 169/249 (67%), Gaps = 4/249 (1%)
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
H +I F NIRF Y VIL++++L I+ G + ++G SGSGKSTL L+ R Y
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
P+NG++LIDG D+ DP +LR Q+G V Q+ L + +I +NI ++ +I+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIY 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
AAK A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
E+E+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+
Sbjct: 178 YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
Query: 634 FNKLMKYQT 642
++ L + Q+
Sbjct: 238 YSYLYQLQS 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 357 bits (920), Expect = e-121
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 5/242 (2%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ F+Y IL D+S + Q S+ + G SG GKST+ LL R Y P G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
IDG I + RSQIG VSQ+ + +GTI EN+ YG+ T D+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD--YTDEDLWQVLDLAF 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A FV + + +T VGERG+ +SGGQ+QR+AIARA ++ KIL+LDEAT++LD+E+E +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A++ L++G+T L IAHRLSTI +++I ++KG+I G + L+ + ++ K +
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236
Query: 640 YQ 641
Q
Sbjct: 237 EQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-116
Identities = 107/248 (43%), Positives = 158/248 (63%), Gaps = 5/248 (2%)
Query: 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
I+F+++ FSYP + + L ++ I SG+ +++G +GSGKST+A LL R YD
Sbjct: 13 KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ G I I G ++ + + +RS IG V Q+ LF+ TI NILYG D T ++I A
Sbjct: 73 E-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKA 128
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
K A Y F+ +DTIVG +G+ LSGG++QRIAIAR L+K KI++ DEATS+LD+
Sbjct: 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ EYL Q A+E L + +T++ IAHRLSTI + I +L+KGKIVE G++ L+K N +
Sbjct: 189 KTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEY 247
Query: 635 NKLMKYQT 642
++ Q+
Sbjct: 248 AEMWNMQS 255
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-111
Identities = 104/273 (38%), Positives = 155/273 (56%), Gaps = 7/273 (2%)
Query: 357 LSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSY-PSRPDA 415
S + ++++++ E + G KG I+F N+ FSY R
Sbjct: 11 SSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-- 68
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
L D+S + G +++G SG+GKST+ LL R YD +G I IDG DI ++ LR
Sbjct: 69 -TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
S IG V Q+ LF+ TI +NI YG + ++ AA+ A + ++ F G+ T V
Sbjct: 128 SHIGVVPQDTVLFNDTIADNIRYGRVTA---GNDEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
GERG+ LSGG+KQR+AIAR ++K I+LLDEATSALD NE +Q+++ K+ +T +
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
+AHRLST+ ++QI V+ G IVE G + L+
Sbjct: 245 VAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 240 bits (613), Expect = 3e-73
Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 10/245 (4%)
Query: 397 KGEIDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
G++ ++ Y IL ++S I G ++G +GSGKSTL LRL + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND-SSSVTKSDIIHA 514
G+I IDGV + R G + Q+ +FSGT +N+ D +++ + +I
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL-----DPNAAHSDQEIWKV 128
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A E + F D ++ + G +LS G KQ + +AR+++ K+KILLLDE ++ LD
Sbjct: 129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+++ +++ TV+ R+ + + +Q V+++ K+ + S L P F
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 635 NKLMK 639
Sbjct: 249 VAGFI 253
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 3e-48
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 40/253 (15%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
E+ N+ + V L D++ KI+ G + +V GS+G+GK++L M+++ +P
Sbjct: 4 TTEVVMENVTAFWEEGGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
GKI G +I SQ + GTI ENI++G +
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFG--------------VSY 95
Query: 517 EANAYGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566
+ Y VI F + ++GE GI LSGGQ+ RI++ARA+ K + + LLD
Sbjct: 96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155
Query: 567 EATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625
LD + + +S + KL+ KT + + ++ ++K+++I +L +G G+++
Sbjct: 156 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 215
Query: 626 LIKNPNSMFNKLM 638
L F+ +
Sbjct: 216 LQNL-QPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 9e-46
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 42/255 (16%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I N F++ +R D LN ++ I G++ +V+G G GKS+L LL D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ I G + V Q+ + + ++ ENIL+G E
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFG--------------CQLE 93
Query: 518 ANAYGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
Y VI +G T +GE+G+ LSGGQKQR+++ARA+ + I L D+
Sbjct: 94 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 568 ATSALDAE-NEYLVQSAI--EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
SA+DA +++ ++ I + +++ KT + + H +S + + + I V+ GKI E+GSY
Sbjct: 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213
Query: 625 HLIKNPNSMFNKLMK 639
L+ + F + ++
Sbjct: 214 ELLAR-DGAFAEFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 6e-45
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 45/286 (15%)
Query: 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS 432
+ E K +++ K +++ FS S +L D++ KI+ G + +
Sbjct: 9 NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLA 68
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
V GS+G+GK++L M+++ +P GKI G +I SQ + GTI
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTI 115
Query: 493 YENIL---YGVNDSSSVTKSDIIHAAKEANAYGFVID----------FKNGFDTIVGERG 539
ENI+ Y + Y VI F + ++GE G
Sbjct: 116 KENIIGVSY------------------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLIEGKTVLTIAH 598
I LSGGQ+ RI++ARA+ K + + LLD LD + + +S + KL+ KT + +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 599 RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
++ ++K+++I +L +G G+++ L +KLM + D
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFD 263
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-41
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 21/232 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++Y A L +++ I+ G +T+++G +G GKSTL + P +G+I
Sbjct: 8 LKVEELNYNYSDGTHA--LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 460 LIDGVDI--KELDPMYLRSQIGSVSQEPT--LFSGTIYENILYG-VNDSSSVTKSDIIHA 514
L D I M LR IG V Q+P LFS ++Y+++ +G VN + + +I
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN--MKLPEDEIRKR 123
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + K ++ LS GQK+R+AIA L+ + K+L+LDE T+ LD
Sbjct: 124 VDNALKRTGIEHLK--------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
+ + ++ + G T++ H + + + + V+ +G+++ G+
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-40
Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 40/253 (15%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I +NI + + LN++SL + +G + VIG+SG+GKSTL + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 459 ILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+L+DG ++ L L R QIG + Q L S T++ N+ + + + K ++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRR 143
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
E ++Y LSGGQKQR+AIARAL K+LL
Sbjct: 144 VTELLSLVGLGDKHDSYP-----------------SNLSGGQKQRVAIARALASNPKVLL 186
Query: 565 LDEATSALDAENEY----LVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
D+ATSALD L++ +L G T+L I H + +++ + + V+ G+++E
Sbjct: 187 CDQATSALDPATTRSILELLKDINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIE 244
Query: 620 IGSYAHLIKNPNS 632
+ + + +P +
Sbjct: 245 QDTVSEVFSHPKT 257
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 7e-40
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 26/234 (11%)
Query: 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ + + L ++SL I G V G++GSGKSTL ++ L +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYG-VNDSSSVTKSDIIHA 514
+L DG K + +R IG Q P F+ +++ + + N D +
Sbjct: 63 DVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD---RDPVPL 116
Query: 515 AKEA-NAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
K+A G D + F LSGG+K+R+AIA ++ + IL+LDE
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFF---------LSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 571 ALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
LD E + + +EK GKTV+ I+H + T+ +++ VL+KGK V G+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 6e-38
Identities = 45/251 (17%), Positives = 101/251 (40%), Gaps = 27/251 (10%)
Query: 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ + + + L +++L++ G ++G +GSGK+TL + L P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAK 516
I I+G+++++ +R+ I + P + T+ + + + + + + K
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLFLEMLK 113
Query: 517 EANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ R + LS GQ + + AL + +I+ LDE +DA
Sbjct: 114 AL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKG-KIVEIGSYAHLIKNPNSM 633
+++ I++ GK + + H L + G ++ S + L+++
Sbjct: 163 RRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVE 220
Query: 634 FNKLMKYQTMD 644
+ +D
Sbjct: 221 GERNDALLVLD 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 4e-37
Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 26/246 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I + I + IL +S +I G + G +G+GK+TL +L +G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 460 LIDGVDI--KELDPMYLRSQIGSVSQEPTL---FSGTIYENILYGVNDSS----SVTKSD 510
+ G +R IG VS + + ++ G S +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEAT 569
A + G + + I LS G+KQR+ IARAL+ + ++L+LDE
Sbjct: 139 RNEAHQLLKLVG-MSAKAQ--------QYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 570 SALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAH 625
+ LD + S ++ L + ++ + H + I + ++I +L G+ ++ G+
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 626 LIKNPN 631
++ + N
Sbjct: 250 ILTSEN 255
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ F Y + + L+ + G + +V+G +G GKSTL LLL ++ P GKI
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYG----VNDSSSVTKSDIIHA 514
+ IG V Q + F+ ++ + +L G +N + D
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QV 108
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A +A Y + LSGGQ+Q I IARA+ + K++LLDE TSALD
Sbjct: 109 AMQALDYLNLTHLA---KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 575 ENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKI 617
N+ +V S + L + TV+ H+ + + +N+ +L+K
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 76/233 (32%), Positives = 111/233 (47%), Gaps = 36/233 (15%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDPMYL 474
+L +++ I+ G + VIG SGSGKST L L D G+I+IDG+++ K+ + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE----------ANAYGF 523
R ++G V Q LF T+ NI + A E A+AY
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP- 157
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE--NEYLVQ 581
LSGGQ QR+AIARAL + KI+L DE TSALD E E V
Sbjct: 158 ----------------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE--VL 199
Query: 582 SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
S +++L EG T++ + H + R+ +++ +D G I+E G L P
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 78/244 (31%), Positives = 117/244 (47%), Gaps = 46/244 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY--- 473
+L +SL+ ++G + S+IGSSGSGKST + L P G I+++G +I +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 474 ----------LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAY- 521
LR+++ V Q L+S T+ EN++ V A + A Y
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA---PIQVLGLSKHDARERALKYL 137
Query: 522 ---GFVIDFKNGFDTIVGERG-----IMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
G + ER + LSGGQ+QR++IARAL + +LL DE TSALD
Sbjct: 138 AKVG------------IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
Query: 574 AENEYLVQ---SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
E LV +++L EGKT++ + H + R S+ + L +GKI E G +
Sbjct: 186 PE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
Query: 629 NPNS 632
NP S
Sbjct: 243 NPQS 246
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 6e-33
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 38/257 (14%)
Query: 392 FSHSLKGEIDFNNIRFSYPS---RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
F+ + + +YP + L +I+ G + ++G +G GK+T +L
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND--SSSV 506
+ +P GKI D + + Q + GT+YE + +S+
Sbjct: 333 AGVEEPTEGKIEWDL-------TVAYKPQYIKAD-----YEGTVYELLSKIDASKLNSNF 380
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLL 565
K++++ + Y +R + LSGG+ QR+AIA L++ + I LL
Sbjct: 381 YKTELLKPLGIIDLY---------------DREVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 566 DEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
DE ++ LD E V AI L+E KT L + H + I S+++ V + G+ + G
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYG- 483
Query: 623 YAHLIKNPNSMFNKLMK 639
A N+ +
Sbjct: 484 RALPPMGMREGMNRFLA 500
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 48/244 (19%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ------NG 457
+ Y +A +L L + ++ G + ++G +G+GKST +L P +
Sbjct: 26 DCVHRYG--VNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 458 KILIDGVDIKELDPMYLRSQIGS----------VSQEPTLFSGTIYENILYGVNDSSSVT 507
+I EL Y V P G + E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------K 131
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K+D +E ++ +N + + LSGG+ QR+AIA AL++ + DE
Sbjct: 132 KADETGKLEEVVK---ALELENVLEREIQH----LSGGELQRVAIAAALLRNATFYFFDE 184
Query: 568 ATSALDAENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
+S LD + + I EGK+VL + H L+ + S+ I V+ G+ G
Sbjct: 185 PSSYLDIR----QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
Query: 622 SYAH 625
++
Sbjct: 240 IFSQ 243
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-32
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 44/253 (17%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F + YP A + +S +I+ G M ++G SGSGK+T+ L+ L P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
I G + +L P R +G V Q LF T+Y+N+ +G+ V K ++ +E
Sbjct: 73 WIGGKRVTDLPP-QKR-NVGLVFQNYALFQHMTVYDNVSFGLR-EKRVPKDEMDARVREL 129
Query: 519 ----NAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ R LSGGQ+QR+A+ARAL + ++LL DE +A+D
Sbjct: 130 LRFMRLESY------------ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 574 AENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ +++ + ++ + G T L +A R + VL +G + + G
Sbjct: 178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADR---------VLVLHEGNVEQFG 228
Query: 622 SYAHLIKNPNSMF 634
+ + + P ++F
Sbjct: 229 TPEEVYEKPGTLF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 8e-32
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+ L + + + G + ++G +G GK+T A +L+ G + + +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
+ G+V Q + + VTK +H E+N
Sbjct: 338 RIFPNYDGTVQQ---YLENASKDALSTSSWFFEEVTKRLNLHRLLESN------------ 382
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-- 589
V + LSGG+ Q++ IA L K++ + +LD+ +S LD E Y+V AI+++
Sbjct: 383 ---VND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
I H LS +++I V KG+ + G
Sbjct: 436 KAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-25
Identities = 42/217 (19%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 418 LNDLSLKI-QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR- 475
L ++ ++ V+G +G GK+T+ +L P G + K+ R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 476 SQIGSVSQEPTLFSGTIYENILY---GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I + +E + I++ V +S K + + + G + K +
Sbjct: 72 KEIYNYFKEL----YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 533 TIVG--ERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ + +LSGG QR+ +A +L++++ + + D+ +S LD + AI +L++
Sbjct: 128 -MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK 186
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
K V+ + H L + ++ I ++ G+ G +
Sbjct: 187 NKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSK 222
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-31
Identities = 54/252 (21%), Positives = 94/252 (37%), Gaps = 38/252 (15%)
Query: 397 KGEIDFNNIRFSYPS---RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
+ D + FSYPS +LN + + ++G +G+GK+TL LL
Sbjct: 344 DLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDI 511
P G+ I +L+ +I LF I L + ++D+
Sbjct: 404 PDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL------NPQFQTDV 451
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ K + ++ + LSGG+ QR+AI AL + I L+DE ++
Sbjct: 452 V---KPLRIDDII------------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA--H 625
LD+E + I + I KT + H ++++ V + + A
Sbjct: 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES 556
Query: 626 LIKNPNSMFNKL 637
L+ N L
Sbjct: 557 LLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 36/236 (15%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---- 459
++ Y + + G + ++G++G GKST +L P G+
Sbjct: 82 HVTHRYSANS---FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 460 -------LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSGTIYENILYGVNDSSSVTKSDI 511
G +++ L I ++ + + + V + +
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLL 565
K I+ ++ LSGG+ QR AI + ++++ + +
Sbjct: 199 PEDVKRYIK-------------ILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 566 DEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
DE +S LD + I L+ K V+ + H LS + S+ +C++ V
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-31
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 33/243 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+++ + Y S L +I+ G + ++G +G GK+T +L + +P GK+
Sbjct: 358 VEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
D + G+V + L S + +S+ K++++
Sbjct: 414 EWDL-TVAYKPQYIKAEYEGTVYE---LLSKIDSSKL------NSNFYKTELLKP----- 458
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ + +D V + LSGG+ QR+AIA L++ + I LLDE ++ LD E
Sbjct: 459 -----LGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 580 VQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
V AI L+E KT L + H + I S+++ V + G+ G A N+
Sbjct: 510 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG-RALPPMGMREGMNR 567
Query: 637 LMK 639
+
Sbjct: 568 FLA 570
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK----- 458
+ Y + ++ G + ++G +G+GK+T +L P +
Sbjct: 96 DCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 459 -ILIDGVDIKELDPMYLRSQIGSVSQ---------EPTLFSGTIYENILYGVNDSSSVTK 508
+I EL + R + G + P G + E + K
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL----------KK 202
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
D + +E ++ +N D + + LSGG+ QR+AIA AL++K+ DE
Sbjct: 203 VDEVGKFEEVVK---ELELENVLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEP 255
Query: 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
+S LD V I +L EGK VL + H L+ + S+ I V+ G+ G +
Sbjct: 256 SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYGIF 311
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++ L LS ++++G + ++G +G+GKSTL + + G I G ++
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 70
Query: 474 LRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN-GF 531
L +SQ+ T F+ ++ + +D T++++++ A A + D
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA---LDDKLGRST 124
Query: 532 DTIVGERGIMLSGGQKQRIAIARAL-------IKKSKILLLDEATSALDAENEYLVQSAI 584
+ LSGG+ QR+ +A + ++LLLDE ++LD + + +
Sbjct: 125 NQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 585 EKLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
L +G ++ +H L+ T+R +++ +L GK++ G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 55/256 (21%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ + L++LSLK++SG ++G +G+GK+ L+ + P +G+I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG D+ +L P I V Q +LF + +N+ +G+ + K +
Sbjct: 58 LLDGKDVTDLSP-EKH-DIAFVYQNYSLFPHMNVKKNLEFGM----RMKKIKDPKRVLDT 111
Query: 519 NAY----GFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+R LSGG++QR+A+ARAL+ KILLLDE SALD
Sbjct: 112 ARDLKIEHL------------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 574 A---ENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVLDKGKIV 618
EN + + L + TV +A R I V+ GK++
Sbjct: 160 PRTQEN---AREMLSVLHKKNKLTVLHITHDQTEARIMADR---------IAVVMDGKLI 207
Query: 619 EIGSYAHLIKNPNSMF 634
++G + + P
Sbjct: 208 QVGKPEEIFEKPVEGR 223
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
IL +S +I+ G + +IG +G+GK+T ++ L P +G + + G ++ E +P
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R I + +E + E + Y + S+I + A
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS------SSEIEEMVERATEI---AGL 136
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
V S G +++ IARAL+ ++ +LDE TS LD N V+ +++
Sbjct: 137 GEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 588 -IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
EG T+L +H + + ++I ++ G IVE G+ L +
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-29
Identities = 47/227 (20%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y D +L +++ I+ G++ + G +G GK+TL + P G+I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
+ +GV I ++ + +I + +E + ++ + + LYGV + K++I+
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----KNEIMD 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + V+D K LS G +R+ +A L+ ++I +LD+ A+D
Sbjct: 118 ALESVE----VLDLKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
Query: 574 AENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
++++ V +I +++ +G +++ LS + L K
Sbjct: 166 EDSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 8e-29
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 42/244 (17%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNG 457
+ N+ +Y + + L +++L I+ G S++G SGSGKST+ + ++ D P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEG 60
Query: 458 KILIDGVDIKELDPMYL----RSQIGSVSQE----PTLFSGTIYENI----LYGVNDSSS 505
++ ID + +LD L R +IG V Q+ P L T EN+ ++ +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIF--KYRGA 115
Query: 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVG--ERGIM-----LSGGQKQRIAIARALIK 558
++ + A E + ER LSGGQ+QR+AIARAL
Sbjct: 116 MSGEERRKRALECL-------------KMAELEERFANHKPNQLSGGQQQRVAIARALAN 162
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
I+L D+ T ALD++ + ++KL +GKTV+ + H ++ R +I L G+
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
Query: 617 IVEI 620
+
Sbjct: 223 VERE 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 63/264 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDPQ 455
+ ++ S+ + +LND+SL + G + +IG+SG GK+TL LR P
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTL----LRCLAGFEQPD 57
Query: 456 NGKILIDGVDIKELD---PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI 511
+G+I + G I + P+ R ++G + QE LF T+Y NI YG+ + +
Sbjct: 58 SGEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRNIAYGLG-NGKGRTAQE 115
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLL 565
+ + G + LSGGQ+QR A+ARAL +++LL
Sbjct: 116 RQRIEAMLE-------------LTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162
Query: 566 DEATSALDAENEYL---VQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQIC 610
DE SALD + L ++ + + GK+ L A R I
Sbjct: 163 DEPFSALDEQ---LRRQIREDMIAALRANGKSAVFVSHDREEALQYADR---------IA 210
Query: 611 VLDKGKIVEIGSYAHLIKNPNSMF 634
V+ +G+I++ S L + P +
Sbjct: 211 VMKQGRILQTASPHELYRQPADLD 234
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-27
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 45/240 (18%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGK 458
+ NI+ IL +SL ++ G S+IG+SGSGKSTL + +L L D P GK
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTL-LYILGLLDAPTEGK 60
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQE----PTLFSGTIYENI----LYGVNDSSSV 506
+ ++G ++ + L ++G V Q P L T EN+ L
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLK-----MGK 112
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKS 560
K + + + +G + LSGG++QR+AIARAL +
Sbjct: 113 PKKEAKERGEYLL-------------SELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159
Query: 561 KILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
+L DE T LD+ N V K+ G +++ + H +++ + GK+V
Sbjct: 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++ ++ ++G +G+GKS L+ + P G++ ++G DI L P R IG
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP-ERR-GIG 73
Query: 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
V Q+ LF ++Y NI YG+ +V + + +E + +R
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHL--------LDR 122
Query: 539 GIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTV-- 593
LSGG++QR+A+ARAL+ + ++LLLDE SA+D + + ++ + + +
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 594 --------LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+A + V+ G+IVE G + + +
Sbjct: 183 VTHDLIEAAMLADE---------VAVMLNGRIVEKGK-LKELFSAKNGE 221
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 54/262 (20%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
I N+ + V L+++++ I++G ++G SG+GK+T +R L P
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTF----MRIIAGLDVP 57
Query: 455 QNGKILIDGVDIKELDPMYLRSQ---IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD 510
G++ D + + + + IG V Q L+ T +ENI + + + ++K +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT-NMKMSKEE 116
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
I +E I+ ++ LSG Q+QR+A+ARAL+K +LL
Sbjct: 117 IRKRVEEVAK-------------ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163
Query: 565 LDEATSALDAENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVL 612
LDE S LDA ++ ++++ G T+ IA R + VL
Sbjct: 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR---------VGVL 214
Query: 613 DKGKIVEIGSYAHLIKNPNSMF 634
KGK+V++G L NP S+
Sbjct: 215 VKGKLVQVGKPEDLYDNPVSIQ 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+ +S+ + G +T +IG +GSGKSTL ++ G++ + DI +P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-AELYH 81
Query: 478 IGSVS--QEPTLFSG-TIYENILYGVNDSSSVTKSDII---HAAKEANAYGF---VIDFK 528
G V Q P T+ EN+L G + + KE +++F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKL 587
+ + LSGGQ + + I RAL+ K++++DE + + + + +L
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLEL 199
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
G T L I HRL + + + V+ G+I
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-21
Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 67/265 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
EI NI + + LN+++LKI+ G +++G SGSGKSTL L +Y P
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTL----LYTIAGIYKP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+GKI D D+ EL P R+ +G V Q P + T+Y+NI + + + +
Sbjct: 56 TSGKIYFDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKNIAFPLE-LRKAPREE 109
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
I +E ++ ++ LSGGQ+QR+AIARAL+K+ ++LL
Sbjct: 110 IDKKVREVAK-------------MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156
Query: 565 LDEATSALDAENEYL-VQ--SAIEKL---IEGKTV---------LTIAHRLSTIRKSNQI 609
LDE S LDA L ++ + +++L + TV L +A R I
Sbjct: 157 LDEPLSNLDAL---LRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR---------I 204
Query: 610 CVLDKGKIVEIGSYAHLIKNPNSMF 634
V+ +G+I+++G+ + P F
Sbjct: 205 AVIREGEILQVGTPDEVYYKPKYKF 229
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 8e-20
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 55/252 (21%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
++ Y + + LK+ G + ++IG++G+GK+T + L Q GKI+ +
Sbjct: 10 QSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 463 GVDIKELDPMYLRSQIGSVSQEP---TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
G DI ++ +++G ++ P +F T+YEN++ G A
Sbjct: 67 GQDITNKPA-HVINRMG-IALVPEGRRIFPELTVYENLMMG--------------AYNRK 110
Query: 519 NAYGFVIDFKNGFDT--IVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+ G D + F + ER G LSGG++Q +AI RAL+ + K+L++DE + L
Sbjct: 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 573 DAENEYLVQ---SAIEKL-IEGKTV----------LTIAHRLSTIRKSNQICVLDKGKIV 618
A LV I+K+ EG T+ L +AH VL+ G+IV
Sbjct: 171 -API--LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY---------GYVLETGQIV 218
Query: 619 EIGSYAHLIKNP 630
G + L+ N
Sbjct: 219 LEGKASELLDNE 230
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 67/265 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
I N++ + ++ +S +++ G +++G SG GK+T L +Y P
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTT----LLMLAGIYKP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+G+I D V + ++ P Y R +G V Q P + T++ENI + + + ++K +
Sbjct: 56 TSGEIYFDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFENIAFPLR-ARRISKDE 109
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
+ E + ++ LSGGQ+QR+A+ARAL+K+ K+LL
Sbjct: 110 VEKRVVEIAR-------------KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156
Query: 565 LDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTIRKSNQI 609
DE S LDA L + + I+ L + G T + T+A R I
Sbjct: 157 FDEPLSNLDAN---LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR---------I 204
Query: 610 CVLDKGKIVEIGSYAHLIKNPNSMF 634
V ++GK+V+ G+ + +P +MF
Sbjct: 205 AVFNQGKLVQYGTPDEVYDSPKNMF 229
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 79/271 (29%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
E+ N+ + + +N L+L I+ G ++G SG GK+T LR L +P
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTT----LRMIAGLEEP 63
Query: 455 QNGKILIDGVDIKELDP------MYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSS 504
G+I D+ L P M V Q P + T+YENI + +
Sbjct: 64 TEGRIYFGDRDVTYLPPKDRNISM--------VFQSYAVWPHM---TVYENIAFPLK-IK 111
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIK 558
K +I + A ++ ++ LSGGQ+QR+A+ARA++
Sbjct: 112 KFPKDEIDKRVRWAAE-------------LLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 559 KSKILLLDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTI 603
+ +LL+DE S LDA+ L V + I+KL + T + T+ R
Sbjct: 159 EPDVLLMDEPLSNLDAK---LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---- 211
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I V+++G++++IGS + PNS+F
Sbjct: 212 -----IAVMNRGQLLQIGSPTEVYLRPNSVF 237
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 69/269 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
+ ++ + + + ++SL+++ G ++G SG GK+T LR L +P
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTT----LRMIAGLEEP 55
Query: 455 QNGKILIDGVDIKELDPMYLRS----QIGSVSQE----PTLFSGTIYENILYGVNDSSSV 506
G+I I + + + I V Q P + T+Y+NI + + V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLK-LRKV 111
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKS 560
+ +I +E ++G ++ LSGGQ+QR+A+ RA+++K
Sbjct: 112 PRQEIDQRVREVAE-------------LLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158
Query: 561 KILLLDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTIRK 605
++ L+DE S LDA+ L V+ + ++KL G T + T+ R
Sbjct: 159 QVFLMDEPLSNLDAK---LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR------ 209
Query: 606 SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I V+++G + ++GS + P + F
Sbjct: 210 ---IAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 6e-15
Identities = 100/655 (15%), Positives = 213/655 (32%), Gaps = 196/655 (29%)
Query: 8 LSKKIYKNLFFNKS------LAFKIISHKP------FSKWKLQNNEKIISRYYTSTPNNQ 55
LSK+ ++ +K F + K F + L+ N K + +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 56 KVGTKIKKSELKKLFT----LAK------SEKRKLTGAVCLLLVSSSIT---MAVPFALG 102
+ T++ + +L+ AK KL A+ L + ++ + G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSG 162
Query: 103 KVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV----SAQSITKKLRE 158
K T ++L + L + V C +++ +N+ S +++ + L +
Sbjct: 163 K-----------------TWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEML-Q 203
Query: 159 RLFGSIISQETAYFD-----KHKTGELINRISADTSLVSQCVTQN---ISDGLRSTVMVS 210
+L I T+ D K + + + L+ +N + +++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 211 AGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEE-RISN 269
A F +S K I++ TR Q + + + A IS
Sbjct: 261 A-----FNLSCK------ILL----------------TTRFKQ--VTDFLSAATTTHISL 291
Query: 270 IRTVKSFSQ-EKLEM--SHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVL--- 323
+ + E + + + + DL +E L+ N LS++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL----PREV-----------LTTNPRRLSIIAES 336
Query: 324 ---------YYGGVMVSYETIT------VGNLSSFLLYAAYIGISIGGLSNFYSELN--- 365
+ V+ + +T + L + +S+ F +
Sbjct: 337 IRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPT 389
Query: 366 KGLGACHRLW-EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
L +W ++++ + ++ + K +SL E S PS I +L +K
Sbjct: 390 ILLS---LIWFDVIKSDVMVVVN--KLHKYSLV-EKQPKESTISIPS-----IYLELKVK 438
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYLRSQIG- 479
+ + L ++ Y+ + ++ +D Y S IG
Sbjct: 439 L-------------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------QYFYSHIGH 479
Query: 480 -----SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ TLF ++ + + + I H + NA G +++
Sbjct: 480 HLKNIEHPERMTLFR-MVFLDFRF--------LEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 535 VGERGIMLSGGQKQRI--AIARALIKKSKILLLDEATS----ALDAENEYLVQSA 583
+ I + + +R+ AI L K + L+ + T AL AE+E + + A
Sbjct: 531 --KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 77/451 (17%), Positives = 131/451 (29%), Gaps = 156/451 (34%)
Query: 243 KFVRKI-TRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFE--LAKK 299
FV ++VQD + + E I +I + + LF L+K+
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEE--IDHI----------IMSKDAVSGTLRLFWTLLSKQ 75
Query: 300 EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSN 359
E + + F L N Y +M I ++ YI
Sbjct: 76 EEMVQ-KFVE-EVLRIN--------YKFLM---SPIKTEQRQPSMMTRMYI--------- 113
Query: 360 FYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVI-L 418
+ + RL+ + + F+ K + SR + L
Sbjct: 114 --EQRD-------RLY-----------NDNQVFA---KYNV----------SRLQPYLKL 140
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----------GKILIDGVDIK 467
L+++ + G GSGK+ +A+ + Y Q ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 468 EL-------DPMY---------LRSQIGSVSQEP-TLFSGTIYEN---ILYGVNDSSSVT 507
L DP + ++ +I S+ E L YEN +L V ++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW- 259
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFD----TIVGERGI----MLSGGQKQRIAIARALIKK 559
N F+ ++ R LS I +L
Sbjct: 260 ---------------------NAFNLSCKILLTTRFKQVTDFLSAATTTHI----SLDHH 294
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKL-IEGKTV--LTIA-------HRLSTIRKSNQI 609
S L DE S L +YL + L E T ++ L+T +
Sbjct: 295 SMTLTPDEVKSLL---LKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 610 CVLDKGKIVEIGSYAHLIKNPN---SMFNKL 637
I+E S L P MF++L
Sbjct: 351 NCDKLTTIIES-SLNVL--EPAEYRKMFDRL 378
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 81/272 (29%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
+ N+ ++ + V+ D++L I G +G SG GKST LLR L
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLETI 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+G + I + + P +G V Q P L ++ EN+ +G+
Sbjct: 56 TSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL---SVAENMSFGL---------K 101
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIML-------------SGGQKQRIAIARALI 557
+ A KE VI+ + V + +L SGGQ+QR+AI R L+
Sbjct: 102 LAGAKKE------VINQR------VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 558 KKSKILLLDEATSALDAENEYL-VQSAIE--KLIE--GKTVL----------TIAHRLST 602
+ + LLDE S LDA L VQ IE +L + G+T++ T+A +
Sbjct: 150 AEPSVFLLDEPLSNLDAA---LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK--- 203
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I VLD G++ ++G L P F
Sbjct: 204 ------IVVLDAGRVAQVGKPLELYHYPADRF 229
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 7e-14
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D N FS ++LN L+++ + G +G GKSTL +R
Sbjct: 435 DLCNCEFSLA-YGAKILLNKTQLRLKRARRYGICGPNGCGKSTL----MRA--------- 480
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAKEA 518
I + + P + V + ++ + V +S TK I +
Sbjct: 481 IANGQV-DGFPTQEECRTVYVEHDIDGTHSDTSVLDF----VFESGVGTKEAI---KDKL 532
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-- 576
+GF + + LSGG K ++A+ARA+++ + ILLLDE T+ LD N
Sbjct: 533 IEFGFTDEM---IAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 577 ---EYLVQSAIEKLIEGKTVLTIAH 598
YL G T +TI+H
Sbjct: 586 WLVNYLNTC-------GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+D + + + LSGGQK ++ +A ++ +++LDE T+ LD ++ +
Sbjct: 886 MLGLDPEIVSHSRIRG----LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALS 941
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
A+++ V+ I H + + ++ + G++
Sbjct: 942 KALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 23/208 (11%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ F YP + D++ + S +VIG +G+GKSTL +L P +G++
Sbjct: 675 TNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT- 732
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
+ + I + Q + + T D +
Sbjct: 733 HENCR----------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN 782
Query: 523 F-----------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ I R + + + + KS+ + +
Sbjct: 783 ENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHR 599
LV+S + + E +A
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALASG 870
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 3e-09
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 32/223 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL ++L + G + +++G +G+GKSTL +L Y + G+IL+DG +I EL P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-DE 76
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA------KEANAYGFVIDFK 528
R++ G LF Y + G VT ++ + A +E F K
Sbjct: 77 RARKG-------LFLAFQYPVEVPG------VTIANFLRLALQAKLGREVGVAEFWTKVK 123
Query: 529 N-----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+D R + SGG+K+R I + L+ + +LDE S LD + +V
Sbjct: 124 KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 582 SAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+ + L I H R+ + +++ V+ G++V G
Sbjct: 184 RGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL LSL + G + +++G +GSGKSTL+ L Y+ G + G D+ L P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-ED 93
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFVIDFKN- 529
R+ G +F Y + GV++ +++ + + + F +
Sbjct: 94 RAGEG-------IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 530 ----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ R + SGG+K+R I + + + ++ +LDE+ S LD + +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 584 IEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+ L ++ + + H R+ K + + VL +G+IV+ G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
+D + L+ G + ++ + + +
Sbjct: 163 LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYS 222
Query: 521 YGFVIDFKNGFDTIVGERGI-----MLSGGQKQ------RIAIARALIKKSKILLLDEAT 569
V +N V G LSGG++ R+A++ L + +L+LDE T
Sbjct: 223 EVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282
Query: 570 SALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKG 615
LD E + + +E+ ++ V+ ++H ++ + +
Sbjct: 283 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 541 MLSGGQKQRIAIA------RALIKKSKILLLDEATSALDAE-NEYLVQSAIEKLIE-GKT 592
LSGG++ + +A L + +L+LDE T LD E L+ +E+ ++
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQ 115
Query: 593 VLTIAHRLSTIRKSNQICVLDKG 615
V+ ++H ++ + +
Sbjct: 116 VILVSHDEELKDAADHVIRISLE 138
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 542 LSGGQKQRIAIARAL-------IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
LSGG++ +A++ L + + ++LDE T LD + K+ ++
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 595 TIAHRLSTIRKSNQICVLDKGK 616
I H ++ I + K
Sbjct: 341 IITHHRELEDVADVIINVKKDG 362
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.98 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.95 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.95 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.9 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.9 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.89 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.88 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.88 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.86 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.86 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.85 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.85 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.83 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.8 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.79 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.78 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.76 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.76 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.76 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.76 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.75 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.73 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.73 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.73 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.72 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.69 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.68 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.67 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.66 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.65 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.64 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.64 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.63 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.63 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.6 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.56 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.56 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.55 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.49 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.48 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.48 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.47 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.46 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.45 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.45 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.45 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.42 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.38 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.33 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.33 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.32 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.31 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.31 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.3 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.2 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.2 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.18 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.14 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.12 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.09 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.09 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 99.08 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.0 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.0 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.97 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.96 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.95 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.94 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.92 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.89 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.85 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.83 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.82 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.81 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.79 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.79 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.75 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.72 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.7 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.7 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.66 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.62 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.6 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.59 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.58 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.55 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.55 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.51 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.49 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.44 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.41 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.39 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.38 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.33 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.3 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.3 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.3 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.29 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.28 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 98.11 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.1 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.09 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.08 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.06 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.01 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.9 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.89 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.84 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.82 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.79 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.79 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.78 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.77 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.73 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.71 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.71 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.7 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.7 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.69 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.68 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.67 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.66 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.62 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.62 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.58 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.54 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.5 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.49 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.47 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.44 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.44 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.43 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.42 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.39 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.37 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.36 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.29 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.28 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.27 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.27 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.21 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.2 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.19 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.15 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.13 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.13 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.13 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.11 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.09 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.09 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.09 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.05 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.99 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.97 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.97 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.92 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.9 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.9 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.89 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.84 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.82 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.82 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.81 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.76 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.75 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.75 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.69 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.69 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.68 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.68 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.66 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.66 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.62 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.61 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.6 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.57 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.55 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.52 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.5 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.49 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.49 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.47 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.47 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.45 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.44 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.44 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.43 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.43 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.43 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.42 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.41 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 96.4 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.39 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.39 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.39 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.37 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.37 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.37 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.33 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.32 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.3 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.24 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.22 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.22 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.21 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.21 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.19 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.19 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.19 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.15 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.14 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.12 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.11 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.07 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.05 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.04 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.03 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.0 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.99 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.96 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.95 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.94 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.94 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.94 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.92 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.9 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 95.88 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.86 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 95.83 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.82 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.8 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.79 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.77 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.75 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.75 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.74 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.72 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.71 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.71 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.7 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.69 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.68 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.66 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.65 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.65 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.65 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.63 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.62 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.62 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.59 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.59 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.59 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.57 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.56 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.56 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.55 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.55 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.54 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.54 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.53 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.52 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.52 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.51 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.51 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.5 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.5 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.49 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.49 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.48 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.47 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.47 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.47 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.45 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.45 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.44 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.44 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.43 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.42 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.42 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.42 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.41 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.4 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.4 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.4 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.4 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.34 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.31 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.31 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.29 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.25 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.25 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.23 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.22 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.19 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.19 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 95.17 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.17 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.17 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.17 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.13 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.12 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.12 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.12 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.11 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.1 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.1 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.1 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.08 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.07 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.06 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.05 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.05 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.05 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.05 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.03 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.02 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.01 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.99 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.97 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.96 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.95 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 94.95 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.93 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.9 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.9 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.88 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.86 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 94.86 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.86 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.83 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.79 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.77 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.76 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.76 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.75 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 94.74 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.73 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.73 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.72 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.72 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.72 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.72 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.71 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.7 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.7 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.69 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.69 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.67 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.67 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.66 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.66 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.63 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.63 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.61 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.61 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.6 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.59 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.58 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 94.56 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.55 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.55 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.54 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.53 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.52 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.51 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.51 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.51 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.51 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.48 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.48 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.48 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.47 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.46 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.46 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.46 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.43 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.4 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.4 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.38 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.36 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.36 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.3 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.29 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.29 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.28 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.27 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.27 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.21 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.2 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.16 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.16 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.15 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.14 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.05 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-105 Score=973.33 Aligned_cols=577 Identities=32% Similarity=0.478 Sum_probs=522.9
Q ss_pred chHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------chHHHHHHHH
Q psy5743 62 KKSELKKLFTLAKSEK-RKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSD------------------KKEMKEKMTS 122 (644)
Q Consensus 62 ~~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~------------------~~~~~~~l~~ 122 (644)
++..++++++|..+.. ..++++++++++..+..++++++++.++|.+.... ...+...+..
T Consensus 58 ~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1321)
T 4f4c_A 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMN 137 (1321)
T ss_dssp SCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHH
T ss_pred CCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 3456778888775543 34455566666666666677788888888653210 1122334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5743 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
+++.++++.+...++.+++.++....++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLE 282 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 282 (644)
+..++++++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 283 MSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362 (644)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~ 362 (644)
.++|.+..++..+...+.........+...++..+..++++++|++++.+|.+++|.+++++.++..+..|+..++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcH
Q psy5743 363 ELNKGLGACHRLWEIMEREPLISTSGG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGK 441 (644)
Q Consensus 363 ~~~~~~~s~~Rl~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGK 441 (644)
.++++.++++|+.++++.+|+.++... .....+..++|+|+||+|+||+++++++|+|+||+|+|||++||||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcH
Confidence 999999999999999988765433221 1122345678999999999997777899999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc
Q psy5743 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521 (644)
Q Consensus 442 STLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~ 521 (644)
|||+++|+|+|+|++|+|.+||+|+++++.++||++||||+|+||||+|||||||+||+|+ ++++++++||+.|+++
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~---~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG---ITREEMVAACKMANAE 534 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc---chHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999999999999999999999886 8999999999999999
Q ss_pred cchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 522 ~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
+||++||+||||+|||+|.+|||||||||+||||+|+||+||||||||||||+++|+.|+++|.++.++||+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 602 ~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
++++||+|+||++|+|+|+|||+||+++ +|.|+++++.|.
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999987 799999998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-103 Score=952.04 Aligned_cols=575 Identities=31% Similarity=0.492 Sum_probs=499.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLM 145 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (644)
+.+++.+.+++++.++++++++++...+....++++...++....... ........++++++++.++..++.+++.++.
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 818 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA-DFLSQGHFWALMFLVLAAAQGICSFLMTFFM 818 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888888887654332 1122334455666667777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 146 NVSAQSITKKLRERLFGSIISQETAYFDK--HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 146 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.++..++|.++|++++++|++||+. +++|+++||+++|++.+++.+...+..++.+++.+++.++++++++|++
T Consensus 819 ~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 819 GIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|++++..+++.++.+....+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFI 978 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888877777777777788888899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL--SSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l--~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
..+...+...+..+..++++++|++++..+..+.+.+ ++++.+......|+..+...+.+++++..+.+|+.++++.+
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1058 (1321)
T 4f4c_A 979 QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKI 1058 (1321)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 7777777766777777888899999998888776654 44444455555688888899999999999999999999987
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+.++..|+|+|+||+|+||++++.+||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|
T Consensus 1059 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1138 (1321)
T 4f4c_A 1059 SKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138 (1321)
T ss_dssp CSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEE
T ss_pred ccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEE
Confidence 76544333333456678899999999999776778999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|++++++++||++|++|||||+||+|||||||+||.++ .+++|+|+++||+.+++++||++||+||||+|||+|.+
T Consensus 1139 DG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp TTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred CCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcc
Confidence 99999999999999999999999999999999999999643 35899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||||||||+|||+||||||||||||++||+.|+++|++.+++||+|+|||||+|+++||+|+|||+|+|+|+|
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhcC
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~~ 643 (644)
||+||+++ +|.|++||+.|..
T Consensus 1298 th~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1298 THTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp CHHHHHHC-C------------
T ss_pred CHHHHHhC-CcHHHHHHHHHHh
Confidence 99999997 7999999999875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-100 Score=859.50 Aligned_cols=569 Identities=26% Similarity=0.437 Sum_probs=520.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++++++++|+.++.+++++++..++.++.|++++.++|.+....+ ...+..+.++++++.++..++.+++.+...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999998765432 223344455556666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++++++.++++++++|.++++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
+++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (587)
T 3qf4_A 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVF 248 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIST 386 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~ 386 (644)
...+..++..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+.+|+.++++.+++.++
T Consensus 249 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 328 (587)
T 3qf4_A 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 77777777777888899999999999999999999999999999999999999999999999999999999987765433
Q ss_pred CCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 387 SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 387 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
.....+.++..+.|+++||+|+|++ .++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 329 ADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CTTCBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred CCCccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 2222122234568999999999985 356899999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++++.++++++++++|+|+||.+||+|.+|||||
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred ccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 999999999999999999999999999999999875 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|||++||||++++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhhcC
Q psy5743 627 IKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 627 l~~~~~~y~~l~~~q~~ 643 (644)
+++ ++.|+++++.|..
T Consensus 565 ~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 565 LEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHH-CHHHHHHHHHHC-
T ss_pred HhC-CcHHHHHHHHHhc
Confidence 987 6999999998853
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-100 Score=861.80 Aligned_cols=572 Identities=31% Similarity=0.498 Sum_probs=523.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKM----TSLSLLLMLVFVVGACCNFGR 141 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~ 141 (644)
+++++++++++++.++.+++++++..++.++.|+++++++|.+...........+ ..++++++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999988754321101112 334445555666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
.+...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+..........++..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+++|+.++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888887788888999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+.++..+.|+++||+|+|++ .++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 654332222222234568999999999985 3568999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++.+++|++++||||+|++|++||+|||.+|.|+ .++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999875 789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
||||||||++||||++++|+|+|||||||+||+++|+.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhc
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+||+++ ++.|+++++.|.
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999987 689999999875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-100 Score=862.32 Aligned_cols=570 Identities=31% Similarity=0.507 Sum_probs=526.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142 (644)
Q Consensus 63 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (644)
+..+++++++++++++.++.+++++++.+++.++.|++++.++|.+....+. ..+..++++++++.++..++.+++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF---DLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG---GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999988653321 2334445556666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 143 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
+.....+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|+
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.......+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888778777888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
+...... .+.++..++|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 339 ~~~~~~~-~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 339 EKDDPDA-VELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp CCCCSSC-CCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 5432211 122334568999999999974 4679999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++.+++|++++||||+|++|++||+|||.+|.++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 416 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp TEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred CEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 9999999999999999999999999999999999999875 7889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhc
Q psy5743 623 YAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+||+++ +|.|+++++.|.
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 799999998874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-97 Score=836.50 Aligned_cols=570 Identities=29% Similarity=0.482 Sum_probs=520.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++++++++++.++.+++++++.+++.++.|+++++++|.+...... ..+..+.++++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES---NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999899999999999999999999999987643221 22223333345566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
......+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.++. . .+.++..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 328 ~~~~-~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 328 RDNG-K-YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CCCC-C-CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 3221 1 1112234579999999999742 36799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+|+++++.+++|++++||||+|++|++|++|||.+|. ++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999997 44 7899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhcC
Q psy5743 623 YAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|+||+++ ++.|+++++.|..
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQFG 581 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhhc
Confidence 9999986 6899999998853
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-97 Score=836.20 Aligned_cols=570 Identities=30% Similarity=0.491 Sum_probs=520.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++++++++++.++.+++++++.+++.++.|+++++++|.+..... ...+..++++++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999997754322 122223333345566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b60_A 168 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
.........++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b60_A 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 327 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888778888889999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.++ .. .+.++..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 328 ~~~-~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 328 KDE-GK-RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CCC-CC-BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred ccC-CC-CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 322 11 1112234679999999999742 36799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+|+++++.+++|++++||||+|++|++|++|||.++. ++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999996 44 7899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|||||||++||||++++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhcC
Q psy5743 623 YAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|+||+++ ++.|+++++.|..
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTCC
T ss_pred HHHHHHc-CCHHHHHHHHhcc
Confidence 9999986 6899999998854
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-94 Score=877.77 Aligned_cols=574 Identities=35% Similarity=0.529 Sum_probs=519.2
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAK-SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDK-----------------KEMKEKMTSLSLL 126 (644)
Q Consensus 65 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-----------------~~~~~~l~~~~~~ 126 (644)
.+.+++++.. .+|..++++++++++..+...+.|++++.++|.+..... ......+..+.++
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 4566777764 456677778888888888899999999999997642110 0011233445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRST 206 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~ 206 (644)
++++.++..++.+++.++....+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+..++.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHH
Q psy5743 207 VMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHF 286 (644)
Q Consensus 207 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 286 (644)
+++++.++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 287 NAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366 (644)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~ 366 (644)
.+..++..+...+..+......++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888877787888888999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHH
Q psy5743 367 GLGACHRLWEIMEREPLISTSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA 445 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl 445 (644)
+..+.+|+.++++.+++.++.. ......+..+.|+++||+|+|++++++++|+|+||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999998776543211 111122345789999999999865556899999999999999999999999999999
Q ss_pred HHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchh
Q psy5743 446 MLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525 (644)
Q Consensus 446 ~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~ 525 (644)
++|+|+|+|++|+|.+||+|+++++++++|++||||+|+|+||++||+|||.+|.++ .++++++++++.++++++++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS---CCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 88999999999999999999
Q ss_pred hhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh
Q psy5743 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 526 ~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~ 605 (644)
++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+++.+++..+++|+|+||||++++++
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 606 SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 606 aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 999999999999999999999987 799999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-89 Score=827.93 Aligned_cols=576 Identities=32% Similarity=0.510 Sum_probs=518.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDK-KEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+.+++++.+++|+.++.+++++++..++..+.|++++.+++.+..... .........+.++++++.++..+..+++.+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999899999999999999999999999987764322 1222333445556666667777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..+.+.++..++|..+|++++++|+.||+ ++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 4899999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
+++++++++|+++++.++..+..+....+..+..++....+.|.++|+++||+|++|+.+.++|.+..+...+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888899999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.......+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+..++++..+.+|+.++++.++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777888889999999999999999999999999998889999998888899999999999999998876
Q ss_pred CccCCCC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 383 LISTSGG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 383 ~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+...... ..+.++..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 5432211 111223457899999999998654567999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++++++|++++||||||.+|++||+|||.+|.+. ...++++++++++.+++++++.++|+||||.|||+|.+
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~-~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~ 1171 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS-RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC-CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCc
Confidence 99999999999999999999999999999999999999764 34789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||+|||||+++|+|||||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhcC
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~~ 643 (644)
+|+||+++ +|.|++|++.|..
T Consensus 1252 ~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1252 THQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp CHHHHHHS-CSHHHHHHHHHC-
T ss_pred CHHHHHhC-CCHHHHHHHHHhh
Confidence 99999987 7999999998853
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-72 Score=576.05 Aligned_cols=277 Identities=37% Similarity=0.594 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCC
Q psy5743 360 FYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439 (644)
Q Consensus 360 ~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGs 439 (644)
....++++.++++|++++++.+++..+.....+.....+.|+++||+|+|++ .+++|+||||+|++||++||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4567788888999999999876543322222222234567999999999974 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHh
Q psy5743 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 440 GKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~ 519 (644)
|||||+++|+|+|+|++|+|.+||+|+..++..++|++|+||+|+|++|++||+|||.+|.+. .++++++++++.++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~---~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT---AGNDEVEAAAQAAG 168 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT---CCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc---CCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999765 78999999999999
Q ss_pred hccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
+++++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|.++.+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred chHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 600 l~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
++++..||+|++|++|+|++.|+|+||++. ++.|+++++.|.
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~ 290 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQ 290 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHH
Confidence 999999999999999999999999999987 799999998875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-60 Score=474.70 Aligned_cols=241 Identities=46% Similarity=0.764 Sum_probs=226.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.+|+++||+|+|++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...+|++
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46999999999953 13579999999999999999999999999999999999999999999999999999999899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+||+|+|.+|++|++|||.++.+. .+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCccccccHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998643 5788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.++
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l 241 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHH
Confidence 99999999999999999999999999998877899999999999998999999999999999999999987646899999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
+..|.
T Consensus 242 ~~~~~ 246 (247)
T 2ff7_A 242 YQLQS 246 (247)
T ss_dssp HHHHC
T ss_pred HHhhc
Confidence 88763
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=469.22 Aligned_cols=240 Identities=45% Similarity=0.734 Sum_probs=224.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+|+|++...+++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||+++..++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753225799999999999999999999999999999999999987 8999999999998888899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+||+|+|.+|++|++|||.++.+. .+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCCC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998543 5678899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|+|||||||||+||+++++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 250 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEM 250 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 999999999999999999999999999998778999999999999989999999999999999999999876 5889999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
+..|.
T Consensus 251 ~~~~~ 255 (260)
T 2ghi_A 251 WNMQS 255 (260)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 88774
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-59 Score=467.17 Aligned_cols=237 Identities=42% Similarity=0.677 Sum_probs=222.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|++|++|||.++ .+. .+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||++
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCccccccHHHHHhhhccCC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998 443 57888999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|++||||||||+||+++++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 235 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV 235 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHH
Confidence 99999999999999999999999999987778999999999999999999999999999999999999876 57888888
Q ss_pred Hhhc
Q psy5743 639 KYQT 642 (644)
Q Consensus 639 ~~q~ 642 (644)
..|.
T Consensus 236 ~~~~ 239 (243)
T 1mv5_A 236 SEQL 239 (243)
T ss_dssp HCCC
T ss_pred Hhhh
Confidence 7664
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-58 Score=466.33 Aligned_cols=241 Identities=39% Similarity=0.690 Sum_probs=222.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974223579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCH-HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTK-SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
|+||+|++.+|++|++|||.++.+. .++ +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTR---TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSS---CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred EEEEecCCccccccHHHHHhhhccc---CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998643 334 678888889999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
+++|+|||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~ 250 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHH
Confidence 999999999999999999999999999998754 7999999999999988999999999999999999999876 5899
Q ss_pred HHHHHhhc
Q psy5743 635 NKLMKYQT 642 (644)
Q Consensus 635 ~~l~~~q~ 642 (644)
.++++.|.
T Consensus 251 ~~~~~~~~ 258 (271)
T 2ixe_A 251 RSMVEALA 258 (271)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99987763
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-56 Score=472.98 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=221.2
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+..+.|+++||+++|++ .+.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+..+++..+
T Consensus 15 ~~~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 34567999999999974 24679999999999999999999999999999999999998 99999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+.++||+|++.+|.+|++||+.++.. ..+++++++++.+++.+++.+.|.+++|.++++|.+||||||||++|||
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAA----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCC----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccc----cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 999999999999999999999986532 5789999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
||+++|++||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.+...|
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~ 248 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchH
Confidence 99999999999999999999999999999998877899999999999999999999999999999999999998766665
Q ss_pred HH
Q psy5743 635 NK 636 (644)
Q Consensus 635 ~~ 636 (644)
..
T Consensus 249 va 250 (390)
T 3gd7_A 249 VA 250 (390)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=437.14 Aligned_cols=225 Identities=29% Similarity=0.497 Sum_probs=205.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+|+|++ .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 3899999999963 245799999999999999999999999999999999999999999999999 69
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|.+|+.|++|||.++.+ .++++..++.+.+++.+++..+|.|++|.+++.+.+||||||||++|||||++
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ----LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC----CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcCCCcCHHHHhhCccc----cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999853 23455667777788877888889999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHH---HHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIE---KLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~---~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
+|++||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~ 223 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHH
Confidence 999999999999999999999999984 44468999999999999989999999999999999999999876 68999
Q ss_pred HHHHhhc
Q psy5743 636 KLMKYQT 642 (644)
Q Consensus 636 ~l~~~q~ 642 (644)
+++..|.
T Consensus 224 ~~~~~~~ 230 (237)
T 2cbz_A 224 EFLRTYA 230 (237)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9998875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=431.02 Aligned_cols=221 Identities=29% Similarity=0.486 Sum_probs=200.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+|+|++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 5999999999964 246799999999999999999999999999999999999999999999999 69
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|.+|++|++|||.++.+ ..+.+..++++..++.+++..+|.+++|.+++.+.+||||||||++|||||++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC----CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEecCCcccCCCHHHHhhccCC----cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999853 34556677788888888999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
+|++||||||||+||+++++.+.+.+ .+..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.++
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999999874 555568999999999999988999999999999999999999875 4566665
Q ss_pred H
Q psy5743 638 M 638 (644)
Q Consensus 638 ~ 638 (644)
+
T Consensus 227 ~ 227 (229)
T 2pze_A 227 L 227 (229)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=437.07 Aligned_cols=227 Identities=30% Similarity=0.461 Sum_probs=195.4
Q ss_pred ccEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH--
Q psy5743 398 GEIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-- 474 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-- 474 (644)
.-|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+..++..++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997422 2468999999999999999999999999999999999999999999999999999987654
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.||||+|++.+|.. |++||+.++... ...+ ++++.++++.+++.++.. ....+|||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQ 170 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQ 170 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHH
Confidence 7889999999999976 999999986321 0122 345667777777655433 334689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+.+|++||||||||+||+.+...|.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988753 8999999999999865 99999999999999999999
Q ss_pred HhcCCCcHHHH
Q psy5743 626 LIKNPNSMFNK 636 (644)
Q Consensus 626 Ll~~~~~~y~~ 636 (644)
++.++...|.+
T Consensus 251 v~~~p~~~~~~ 261 (366)
T 3tui_C 251 VFSHPKTPLAQ 261 (366)
T ss_dssp HHSSCCSHHHH
T ss_pred HHhCCCcHHHH
Confidence 99866555543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=411.54 Aligned_cols=218 Identities=30% Similarity=0.425 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l---- 474 (644)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999999999999999999998765
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
|+.||||+|+|.+|.. |++||+.++.... ...+ .+++.++++..++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4569999999999987 9999998742100 0122 23344555555543321 1345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888999999999999999998877
Q ss_pred Hh
Q psy5743 626 LI 627 (644)
Q Consensus 626 Ll 627 (644)
+-
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=419.57 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999974 346999999999999999999999999999999999999999999999999994 334567889
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
.||||+|+| .+|..|++||+.++... ...+. +++.++++..++.++ ......+||||||||+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRV 152 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHH
Confidence 999999997 58899999999987432 11333 345556666665443 2344568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-C-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-E-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. + ++|+|+|||+++.+. .||+|++|++|++++.|+++|++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999998875 3 899999999999986 59999999999999999999998
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
..
T Consensus 233 ~~ 234 (275)
T 3gfo_A 233 AE 234 (275)
T ss_dssp HH
T ss_pred cC
Confidence 64
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=408.94 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 477 (644)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999998887765 445
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++||+|++.+|.+ |++||+.++.... .+.++..+.++ +.++.++ |++...+....+||||||||++|||||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999987 9999999974111 12223222222 1233333 344556677789999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999998875 589999999999876 67999999999999999999999753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=419.93 Aligned_cols=238 Identities=29% Similarity=0.462 Sum_probs=188.3
Q ss_pred HHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 373 Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|+.++++.+.+..... . .....+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNNR-K--TSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccccc-c--ccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6777776554322111 1 11223469999999964 36899999999999999999999999999999999999
Q ss_pred CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc
Q psy5743 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532 (644)
Q Consensus 453 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~ 532 (644)
+|++|+|.++| +++||+|++.+|++|++|||. +.. ..+.++.++++..++.+++..+|.+++
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~ 150 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS----YDEYRYRSVIKACQLEEDISKFAEKDN 150 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC----CCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc----cchHHHHHHHHHhChHHHHHhcccccc
Confidence 99999999999 699999999999999999998 532 345566677888888888999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEE
Q psy5743 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 533 T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
|.+++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++
T Consensus 151 ~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~ 230 (290)
T 2bbs_A 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230 (290)
T ss_dssp CBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEE
T ss_pred chhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999999999864 455568999999999999999999999
Q ss_pred EeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 612 LDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|++|++++.|+++++++. ...|.+.
T Consensus 231 l~~G~i~~~g~~~~l~~~-~~~~~~~ 255 (290)
T 2bbs_A 231 LHEGSSYFYGTFSELQNL-RPDFSSK 255 (290)
T ss_dssp EETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred EECCeEEEeCCHHHHhhh-cHHHHHH
Confidence 999999999999999764 3455443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=409.86 Aligned_cols=216 Identities=27% Similarity=0.426 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||+|++.+ |+.|++||+.++.... ....++++.++++..++.++..+ ...+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 999999987 6789999999985321 12345677888888877654322 2347999999999999999
Q ss_pred cc------CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 557 IK------KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 557 l~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++ +|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 69999999999999999999997
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=408.03 Aligned_cols=221 Identities=33% Similarity=0.463 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 345567788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC-CCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGV-NDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~-~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|+||+|++.+|.. |++||+.++. .. ...+ ++++.++++..++.++. .....+||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv 168 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKV-RKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRV 168 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHH
Confidence 99999999999987 9999999852 10 0122 34556667776665432 334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998874 4789999999999986 599999999999999999999987
Q ss_pred CCCcHH
Q psy5743 629 NPNSMF 634 (644)
Q Consensus 629 ~~~~~y 634 (644)
.+...+
T Consensus 249 ~~~~~~ 254 (263)
T 2olj_A 249 RPQHER 254 (263)
T ss_dssp SCCSHH
T ss_pred CcccHH
Confidence 543344
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-50 Score=418.77 Aligned_cols=224 Identities=28% Similarity=0.464 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~ 476 (644)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999953 579999999999999999999999999999999999999999999999999932 22334577
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.||||+|++.+|.. |++|||.|+...... ..++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 89999999999974 999999998532111 12356777888888766544433 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++.+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 389999999999987 56999999999999999999999987
Q ss_pred CCcHHHH
Q psy5743 630 PNSMFNK 636 (644)
Q Consensus 630 ~~~~y~~ 636 (644)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 6555543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-50 Score=403.81 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999953 579999999999999999999999999999999999999999999999999976 56778899
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++||+|++.+|.+ |++||+.++... ...+ ++++.++++..++.++.. ....+||||||||++|
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGF-YASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLI 157 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 9999999999987 999999885310 0022 245667777777655432 3346899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998875 47999999999999876 99999999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=406.64 Aligned_cols=218 Identities=33% Similarity=0.483 Sum_probs=186.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE---------- 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~---------- 468 (644)
-|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 479999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhcceEEEecCCCCCcc-cHHHHHhcCC-CCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 469 LDP---MYLRSQIGSVSQEPTLFSG-TIYENILYGV-NDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 469 ~~~---~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~-~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
++. ..+|+.++||+|++.+|.. |++||+.++. .. ...+ ++++.++++..++.+++ .....
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-LGLSKHDARERALKYLAKVGIDERA----------QGKYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh-cCCCHHHHHHHHHHHHHHcCCCchh----------hcCCc
Confidence 444 3568889999999999987 9999999852 10 0122 34566677777665441 22344
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998874 3789999999999985 6999999999999
Q ss_pred EEecChhHHhcCC
Q psy5743 618 VEIGSYAHLIKNP 630 (644)
Q Consensus 618 ve~Gt~~eLl~~~ 630 (644)
++.|+++++++.+
T Consensus 232 ~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 232 EEEGDPEQVFGNP 244 (262)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCc
Confidence 9999999998753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-50 Score=406.26 Aligned_cols=216 Identities=30% Similarity=0.470 Sum_probs=188.9
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|+++|++++|+.+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhc--cchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAY--GFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~--~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+|+| .+++.|++||+.++.... ....++++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 578899999999974210 113357788899998887 5544433 579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-50 Score=422.07 Aligned_cols=221 Identities=27% Similarity=0.458 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999988775 4689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+. ..+||||||||++||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIG 145 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHHHH
Confidence 999999999975 999999997421 1123 34566677777765544333 357999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||..+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+...+
T Consensus 146 rAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999999988753 79999999999887 569999999999999999999999876
Q ss_pred CcHHHH
Q psy5743 631 NSMFNK 636 (644)
Q Consensus 631 ~~~y~~ 636 (644)
...|..
T Consensus 226 ~~~~v~ 231 (381)
T 3rlf_A 226 ADRFVA 231 (381)
T ss_dssp SBHHHH
T ss_pred ccHHHH
Confidence 666644
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=398.23 Aligned_cols=211 Identities=29% Similarity=0.368 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 57999999999999999999999999999999999999999999999999998887653 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 -SQIGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 -~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++++||+|++.+|. .|++||+.++..... ...++++.++++..++.++. .....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 78999999999987 499999998632100 01234566666666665433 233468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 47999999999999888999999999999999873
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=403.65 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887753 46778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCC-CCC-----------CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVND-SSS-----------VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~-~~~-----------~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
++||+|++.+|. .|++||+.++... ... .+ .+++.++++..+ ++........
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCch
Confidence 999999999886 5999999987421 000 11 123444444444 3334455667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999999988753 799999999999875 69999999999999
Q ss_pred EecChhH
Q psy5743 619 EIGSYAH 625 (644)
Q Consensus 619 e~Gt~~e 625 (644)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-49 Score=413.80 Aligned_cols=220 Identities=29% Similarity=0.541 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalA 145 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALA 145 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 9999999974321 112 356778888888776655444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999987 579999999999999999999999865
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 226 ~~~~~ 230 (359)
T 2yyz_A 226 KNMFV 230 (359)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=414.96 Aligned_cols=221 Identities=28% Similarity=0.532 Sum_probs=191.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 3469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
||||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||++|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRval 156 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVAL 156 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHH
Confidence 9999999999985 999999986321 0122 356777888888766544444 5899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988753 78999999999987 55999999999999999999999876
Q ss_pred CCcHH
Q psy5743 630 PNSMF 634 (644)
Q Consensus 630 ~~~~y 634 (644)
+...|
T Consensus 237 p~~~~ 241 (355)
T 1z47_A 237 PGTLF 241 (355)
T ss_dssp CSSHH
T ss_pred ccchH
Confidence 54444
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=416.19 Aligned_cols=220 Identities=34% Similarity=0.544 Sum_probs=191.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalA 145 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIA 145 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 999999986321 0122 345777888888766654444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 79999999999886 569999999999999999999998765
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 226 ~~~~~ 230 (362)
T 2it1_A 226 KYKFV 230 (362)
T ss_dssp SBHHH
T ss_pred cchHH
Confidence 55543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=395.20 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.... .+|++++
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 49999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
||+|++.+|.. |++||+.++..... ..+++++.++++..++.++.. ....+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 99999999743100 011345666666666654432 234589999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++++.+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999988753 79999999999976 569999999999999999999998753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=414.12 Aligned_cols=218 Identities=29% Similarity=0.496 Sum_probs=190.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+..+ .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 9999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|.. |++|||.|+........++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999986 99999998732100012377888888888876654444 5899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++|+++++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 78999999999876 6699999999999999999999987654444
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=405.19 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 47999999999999999999999999999999999999999999999999998 788888999
Q ss_pred ceEEEecCCCC-Ccc--cHHHHHhcCCCCC----CCCC---HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 477 QIGSVSQEPTL-FSG--TIYENILYGVNDS----SSVT---KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 477 ~i~~V~Q~~~L-f~g--TIreNI~~g~~~~----~~~~---~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|+||+|++.+ |.. |++||+.++.... ...+ ++++.++++..++.++ ......+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHH
Confidence 99999999875 555 9999999873110 0012 2345566666665433 234456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceE--EEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTV--LTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~Tv--I~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988754 7899 9999999987 5699999999999999999
Q ss_pred hhHHhc
Q psy5743 623 YAHLIK 628 (644)
Q Consensus 623 ~~eLl~ 628 (644)
++++.+
T Consensus 247 ~~~~~~ 252 (279)
T 2ihy_A 247 VEDILT 252 (279)
T ss_dssp HHHHCS
T ss_pred HHHHhc
Confidence 999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=413.20 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..+++. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+. +++.++++..++.++..+.| .+||||||||++||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalA 153 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVA 153 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 999999998532 11232 45677777777765544433 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++.++
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999987 579999999999999999999999765
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 234 ~~~~~ 238 (372)
T 1v43_A 234 NSVFV 238 (372)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=393.77 Aligned_cols=208 Identities=22% Similarity=0.347 Sum_probs=188.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+|+ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999999889899999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|.+ |++||+.++... ..+++++.++++..++.++. .....+||||||||++|||||++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD--KTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS--TTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc--CCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999998875 999999998421 12477788888888876543 23456899999999999999999
Q ss_pred CCC-------EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 559 KSK-------ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 559 ~p~-------IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|+ +||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999 999999999999999999999998874 478999999999998 6799999999999999999999975
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=413.61 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=190.5
Q ss_pred EEEEEEEEEcCCCCCCc--cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHH
Q psy5743 400 IDFNNIRFSYPSRPDAV--ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~l 474 (644)
|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+ ....
T Consensus 4 l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 899999999953 45 999999999999999999999999999999999999999999999999987621 2345
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++||||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 7889999999999986 999999998532 1122 345777888888766554444 5899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988753 79999999999987 56999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
++++...|
T Consensus 229 ~~~p~~~~ 236 (353)
T 1oxx_K 229 YDNPVSIQ 236 (353)
T ss_dssp HHSCSSHH
T ss_pred HhCcccHH
Confidence 87654444
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=413.04 Aligned_cols=219 Identities=25% Similarity=0.450 Sum_probs=189.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC------CChHH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE------LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~------~~~~~ 473 (644)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. +++
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 899999999953 469999999999999999999999999999999999999999999999999876 554
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 474 LRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++.||||+|++.+|. .|++|||.|+... ...+ ++++.++++..++.++..+.| .+|||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 5999999987321 0122 345777888888766544433 579999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 78999999999987 5699999999999999999999
Q ss_pred HhcCCCcHHH
Q psy5743 626 LIKNPNSMFN 635 (644)
Q Consensus 626 Ll~~~~~~y~ 635 (644)
++.++...|.
T Consensus 227 l~~~p~~~~~ 236 (372)
T 1g29_1 227 VYDKPANTFV 236 (372)
T ss_dssp HHHSCSBHHH
T ss_pred HHhCcccHHH
Confidence 9976555553
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=393.81 Aligned_cols=213 Identities=25% Similarity=0.378 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-hc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-RS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 476 (644)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 5799999999999999999999999999999999999 89999999999999998887765 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCCCC----HHHHHHHHHHHhhc-cchhhhhcCccccccCCCCCCChhHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVND--SSSVT----KSDIIHAAKEANAY-GFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~--~~~~~----~~~i~~a~~~a~l~-~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++||+|+|.+|.+ |++||+.++... ..... ++++.++++..++. +. .+..+++ +|||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~~~---~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-------LSRYLNE---GFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-------GGSBTTC---C----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-------hcCCccc---CCCHHHHH
Confidence 69999999999986 999999875210 00011 23455666666652 22 1222221 39999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+++|++||||||||+||+++++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999875 47899999999999876 59999999999999999873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-48 Score=391.44 Aligned_cols=215 Identities=23% Similarity=0.343 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-h
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-R 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r 475 (644)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4999999999953 5799999999999999999999999999999999999 57999999999999998887665 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC------CCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCC-C-CC
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVN------DSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERG-I-ML 542 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~------~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G-~-~L 542 (644)
+.++||+|++.+|.+ |++||+.++.. .....+. +++.++++..++ ++...++. . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcccCC
Confidence 469999999999886 89999976320 0001222 234445555444 22222222 2 59
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive 619 (644)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 47899999999999875 89999999999999
Q ss_pred ecChhHHh
Q psy5743 620 IGSYAHLI 627 (644)
Q Consensus 620 ~Gt~~eLl 627 (644)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=388.58 Aligned_cols=209 Identities=18% Similarity=0.299 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++|++++|++. .++++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01579999999999 9999999999999999999999999 9999999999998765 23 7789
Q ss_pred E-EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc-cchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 G-SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY-GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~-~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~-~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+ ||+|++.+ +.|++||+.++.+. ...+++++.++++..++. +. ......+||||||||++|||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~-~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEEL-KGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHH-TCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhh-cchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9 99999999 99999999986421 024577788888777664 33 3445678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcC-EEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSN-QICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD-~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+ +.|| +|++|++|++++.|+++|+.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999988754 999999999987 5799 999999999999999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=385.67 Aligned_cols=210 Identities=30% Similarity=0.425 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++.++
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999962 35799999999999999999999999999999999999999999998 356899
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|++.+| ..|++||+.++.... ...+++++.++++..++.++.. ....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999988 679999999974210 0012345677777777655432 345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988754 78999999999998 5799999999999 99999999874
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
. ..+.+.+
T Consensus 218 ~--~~~~~~~ 225 (253)
T 2nq2_C 218 S--ENLTALF 225 (253)
T ss_dssp H--HHHHHHH
T ss_pred c--HHHHHHh
Confidence 3 3344444
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-47 Score=371.00 Aligned_cols=199 Identities=20% Similarity=0.321 Sum_probs=168.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.+
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 499999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||+|++.+|.+ |++||+.++..... ..+++++.++++..++. .. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 99999998632100 12356777777766543 33 455678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..++..+++.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998875 478999999999998775444556667764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=377.21 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=201.0
Q ss_pred HHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEE
Q psy5743 329 MVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFS 408 (644)
Q Consensus 329 ~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 408 (644)
-...+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++....... ..+..+.|+++||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGS--WKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCC--THHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCc--ccccCCeEEEEEEEEE
Confidence 345566777889999988777 4899999999999999999999999999865432221111 0111235899999999
Q ss_pred cCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 409 YPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 409 Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
|+ .++|+|+||+|++|+++|||||||||||||+++|+|++ +|+| +++|+|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 95 46999999999999999999999999999999999999 7998 45789999999
Q ss_pred cccHHH-HHhcCCCCCCCCCHHHHHHHHHHHhhccchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 489 SGTIYE-NILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 489 ~gTIre-NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
++|++| ||.++ ++ +++ +++++++. ||+|++ |.+|||||||| |||++++|+|||
T Consensus 166 ~~ti~~~ni~~~-~~---~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 166 LASLADTRAALV-DD---ATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp GGGGTTCSCEEE-EE---ECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred cccHHHHhhccC-cc---ccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence 999998 99997 33 343 34566777 899998 78999999999 999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 567 EATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||+||+++++.|.. +|||+++++.||+| +|++|+|++.|+|++| ++.|++++..|.
T Consensus 221 --Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp --EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred --ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 99999999988852 39999999999999 9999999999999999 378999987654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=341.49 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++.+|.+ ..|++.||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 4889999999953 4688889999999999999999999999999999999999999998763 68
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|+||++.. +..|++||+.+..........+.+.++++..++.++ ......+||||||||++|||||.
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 999999874 578999999875332111223444555555554433 33344679999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK--GKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~--G~ive~Gt~~eLl 627 (644)
++|+|||||||||+||..+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |.+...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998875 47899999999999865 999999986 5666677766653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=344.82 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999953 36899999999999999999999999999999999999999999862 379
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||||++.. ++.|+.||+... .+. ....+++.++++..+ +..........||||||||++|||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASK--LNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATL 416 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH--HTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccC--CCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999876 678999998754 110 011233333333333 33333444568999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK--GKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~--G~ive~Gt~~eLl~ 628 (644)
+++|++|||||||++||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999998874 3899999999999986 5999999996 78889999988874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=346.59 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=168.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++++|.+ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999953 36899999999999999999999999999999999999999999862 379
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||||++.+ ++.|++||+... .+. ..+.+++.++++..++.+. ......+||||||||++|||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~--~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSK--LNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATL 486 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH--HHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCccCCCCCcHHHHHHhhhccC--CCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999876 678999999764 110 0123445556666655432 2233457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK--GKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~--G~ive~Gt~~eLl~ 628 (644)
.++|++||||||||+||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999999874 4899999999999986 5999999986 88888999998874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=357.37 Aligned_cols=198 Identities=24% Similarity=0.388 Sum_probs=154.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++|+|++. ++++|+|+||++++|+++||+||||||||||+|+|+|+++|++|+|.++|. ..++
T Consensus 672 L~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 672 VKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred EEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 8999999999742 357999999999999999999999999999999999999999999999872 1578
Q ss_pred EEecCCCC-----CcccHHHHHhc--------------------------------------------------------
Q psy5743 480 SVSQEPTL-----FSGTIYENILY-------------------------------------------------------- 498 (644)
Q Consensus 480 ~V~Q~~~L-----f~gTIreNI~~-------------------------------------------------------- 498 (644)
||+|++.. ++.|+++|+.+
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 88887531 23455555532
Q ss_pred ----------CCCC--------------------------------------CCCCCHHHHHHHHHHHhhccchhhhhcC
Q psy5743 499 ----------GVND--------------------------------------SSSVTKSDIIHAAKEANAYGFVIDFKNG 530 (644)
Q Consensus 499 ----------g~~~--------------------------------------~~~~~~~~i~~a~~~a~l~~~i~~lp~G 530 (644)
+.+. ..+..++++.+.++.. |
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l-----------G 888 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML-----------G 888 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT-----------T
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc-----------C
Confidence 1100 0001122233333333 4
Q ss_pred ccccc--cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcC
Q psy5743 531 FDTIV--GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSN 607 (644)
Q Consensus 531 l~T~i--ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD 607 (644)
++... .....+||||||||++||||++.+|+||||||||++||.++...+.+.|++. +.|+|+|||+++.+. .||
T Consensus 889 L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCC
T ss_pred CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCC
Confidence 43322 3445689999999999999999999999999999999999999999999876 679999999999985 699
Q ss_pred EEEEEeCCeEEEecC
Q psy5743 608 QICVLDKGKIVEIGS 622 (644)
Q Consensus 608 ~Iivl~~G~ive~Gt 622 (644)
+|++|++|++++.|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999998774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=336.11 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=166.7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCC-----CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSG-----SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G-----~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678899974 346799999999999 7899999999999999999999999999972 21 236
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|+.. .|.+|+++|+...... ...+.+...++++..++.+. .......||||||||++|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~-~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRG-QFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSS-TTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHhhc-ccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999965 5788999998753221 11345556666777766443 2334467999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK--GKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~--G~ive~Gt~~eLl~~ 629 (644)
..+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++..|++++++..
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999999999999998864 48999999999999864 999999996 999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.13 Aligned_cols=197 Identities=25% Similarity=0.321 Sum_probs=159.8
Q ss_pred cEEE--------EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE---------EE
Q psy5743 399 EIDF--------NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---------LI 461 (644)
Q Consensus 399 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I---------~i 461 (644)
.|++ +|++++|++ ...+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 899999964 235899999 999999999999999999999999999999999996 45
Q ss_pred CCccCCCCChHH--HhcceEEEecCC----CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 462 DGVDIKELDPMY--LRSQIGSVSQEP----TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 462 dg~~i~~~~~~~--lr~~i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
+|.++..+.... .+..+++++|.. .++.+|++||+.... ..+++.++++..++.+.. +..
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~~~~~~~~L~~lgL~~~~-------~~~- 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------EVGKFEEVVKELELENVL-------DRE- 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------CSSCHHHHHHHTTCTTGG-------GSB-
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------HHHHHHHHHHHcCCCchh-------CCC-
Confidence 676654331111 234588888864 345579999997531 235567778887765432 222
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEe
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLD 613 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~ 613 (644)
-..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+
T Consensus 226 ---~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 226 ---LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 34699999999999999999999999999999999999999999998874 3899999999999885 489999998
Q ss_pred CC
Q psy5743 614 KG 615 (644)
Q Consensus 614 ~G 615 (644)
++
T Consensus 303 ~~ 304 (607)
T 3bk7_A 303 GE 304 (607)
T ss_dssp SC
T ss_pred CC
Confidence 65
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.65 Aligned_cols=215 Identities=22% Similarity=0.359 Sum_probs=141.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhccCCCC-------CcEEEECCcc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA---------------------MLLLRLYDPQ-------NGKILIDGVD 465 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl---------------------~lL~g~~~p~-------~G~I~idg~~ 465 (644)
...+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 8999999998 5666777766
Q ss_pred CCCCChHHHhcceEEEecCCCCC--------------------cccHHHHHhcCCCCCCCCCHHH-----HHHHHHHHhh
Q psy5743 466 IKELDPMYLRSQIGSVSQEPTLF--------------------SGTIYENILYGVNDSSSVTKSD-----IIHAAKEANA 520 (644)
Q Consensus 466 i~~~~~~~lr~~i~~V~Q~~~Lf--------------------~gTIreNI~~g~~~~~~~~~~~-----i~~a~~~a~l 520 (644)
.... .++.+++|+|.+.++ .-|++||+.++........+.+ +.++.+..++
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 5432 345677777765443 4589999988532100000111 1111111111
Q ss_pred ccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy5743 521 YGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTI 596 (644)
Q Consensus 521 ~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~I 596 (644)
++.+ |++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. .++|+|+|
T Consensus 186 ---l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 186 ---LQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp ---HHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1211 33221 234456799999999999999999988 999999999999999999999998864 47899999
Q ss_pred ccCchHHhhcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 597 AHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 597 aHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
||+++.+..||+|++| ++|++++.|+++++.+.+...+...
T Consensus 261 tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 261 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 9999999999999999 8999999999999987644444433
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=341.69 Aligned_cols=206 Identities=27% Similarity=0.352 Sum_probs=153.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh---------------------ccCCCCCcEEEECCccCCCCChHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL---------------------RLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~---------------------g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
.++|+||||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|.++.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 112344579999999987654322
Q ss_pred Hhc-----------------------------------------ceEEEecCCCCC------------------------
Q psy5743 474 LRS-----------------------------------------QIGSVSQEPTLF------------------------ 488 (644)
Q Consensus 474 lr~-----------------------------------------~i~~V~Q~~~Lf------------------------ 488 (644)
.+. ..|++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123333332222
Q ss_pred ---------cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 489 ---------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 489 ---------~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
.-|++||+.+.... ...++..++++..++. +...+....+||||||||++|||||+++
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI---PKIKRKLETLYDVGLG----------YMKLGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC---HHHHHHHHHHHHTTCT----------TSBTTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh---hhHHHHHHHHHHcCCc----------hhhccCCchhCCHHHHHHHHHHHHHhhC
Confidence 35889999887431 1223333333333321 1234566778999999999999999988
Q ss_pred C---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 560 S---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 560 p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
| ++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++| ++|+|++.|+++|+.+.
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 7 5999999999999999999999998875 479999999999999999999999 89999999999999875
Q ss_pred CCcH
Q psy5743 630 PNSM 633 (644)
Q Consensus 630 ~~~~ 633 (644)
++..
T Consensus 642 ~~~~ 645 (670)
T 3ux8_A 642 KESH 645 (670)
T ss_dssp TTCH
T ss_pred CccH
Confidence 4333
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=333.85 Aligned_cols=196 Identities=24% Similarity=0.320 Sum_probs=155.4
Q ss_pred EEE-EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE---------EECCccCCCC
Q psy5743 400 IDF-NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---------LIDGVDIKEL 469 (644)
Q Consensus 400 I~~-~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I---------~idg~~i~~~ 469 (644)
.++ +|++++|++ ..++|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 699999964 235899999 999999999999999999999999999999999996 4566655432
Q ss_pred ChHHH--hcceEEEecCCCC----CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 470 DPMYL--RSQIGSVSQEPTL----FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 470 ~~~~l--r~~i~~V~Q~~~L----f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..... +..+++++|+... +.+|++||+.... ..+++.++++..++.+. .+.+ -.+||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------~~~~~~~~l~~lgl~~~-------~~~~----~~~LS 160 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------ETGKLEEVVKALELENV-------LERE----IQHLS 160 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------SSSCHHHHHHHTTCTTT-------TTSB----GGGCC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------HHHHHHHHHHHcCCChh-------hhCC----hhhCC
Confidence 11111 2458899987543 3469999996431 23456777777776433 2233 34699
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKG 615 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G 615 (644)
||||||++|||||+.+|++||||||||+||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999998864 47899999999998865 9999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=328.92 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=162.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+...|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..+
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5888899999963 479999999999999999999999999999999996 554 5544321 1247
Q ss_pred EEEecCC-CC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEP-TL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~-~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++ .+ ..-|++||+.+... .. ++++.++++..++.+.. .+.++ ..||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~---~~-~~~v~~~L~~lgL~~~~------~~~~~----~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGV---GT-KEAIKDKLIEFGFTDEM------IAMPI----SALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCS---SC-HHHHHHHHHHTTCCHHH------HHSBG----GGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhhc---CH-HHHHHHHHHHcCCChhh------hcCCc----ccCCHHHHHHHHHHHHH
Confidence 8999985 33 45699999986211 12 67788888888874211 12222 46999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEE-EecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
+.+|+|||||||||+||..+...+.+.|++ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++++
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988 5899999999999985 59999999999997 5899999874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.19 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=165.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHH---------HHHhccCCCC------Cc------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA---------MLLLRLYDPQ------NG------ 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl---------~lL~g~~~p~------~G------ 457 (644)
.+++++++ ...|+||||+|++|++++|+|+||||||||+ +++.+...+. +|
T Consensus 589 ~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 589 SLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred eEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46666553 3469999999999999999999999999997 4444443332 33
Q ss_pred EEEECCccCCCCCh----------HHHh-------------------------------cceEEEecCCCCCc-------
Q psy5743 458 KILIDGVDIKELDP----------MYLR-------------------------------SQIGSVSQEPTLFS------- 489 (644)
Q Consensus 458 ~I~idg~~i~~~~~----------~~lr-------------------------------~~i~~V~Q~~~Lf~------- 489 (644)
.|.+|+.++..... +.+| +..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 36666666643221 1111 23577777766543
Q ss_pred --------------------------ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 490 --------------------------GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 490 --------------------------gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.|++||+.|.... ...++..++++.+++ |+ ..+|+.+.+||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~---~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LS 807 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNI---PSIKRTLQVLHDVGL---------GY-VKLGQPATTLS 807 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTC---HHHHHHHHHHHHTTG---------GG-SBTTCCSTTCC
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcc---hhHHHHHHHHHHcCC---------ch-hhccCCccCCC
Confidence 4778888777432 223444555555554 22 34688999999
Q ss_pred hhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------e
Q psy5743 544 GGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------D 613 (644)
Q Consensus 544 GGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~ 613 (644)
|||||||+|||||.++| +|||||||||+||+.+++.+++.|.++. +++|+|+|+|+++.++.||+|++| +
T Consensus 808 GGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~ 887 (916)
T 3pih_A 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKE 887 (916)
T ss_dssp HHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGG
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCC
Confidence 99999999999999876 7999999999999999999999998874 489999999999999999999999 8
Q ss_pred CCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|+|++.|+|+|+++.++++...++
T Consensus 888 ~G~Iv~~Gtpeel~~~~~syt~~~l 912 (916)
T 3pih_A 888 GGYIVATGTPEEIAKNPHSYTGRFL 912 (916)
T ss_dssp CCEEEEEESHHHHHSCTTCHHHHHH
T ss_pred CCEEEEEcCHHHHHhCCchHHHHHH
Confidence 9999999999999987544444444
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=315.47 Aligned_cols=197 Identities=22% Similarity=0.328 Sum_probs=153.1
Q ss_pred EEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccCCCCChH
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-----------LIDGVDIKELDPM 472 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~~~ 472 (644)
|++++|..+ ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468999642 35678877 689999999999999999999999999999999998 4455555444344
Q ss_pred HHhcceEE--EecCCCC----Cc---ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 473 YLRSQIGS--VSQEPTL----FS---GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 473 ~lr~~i~~--V~Q~~~L----f~---gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.+++.+.. .+|.... +. .++.+++..... ..++++.++++..++.+... ..-..||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS 223 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK-----------RDIEKLS 223 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC----SCHHHHHHHHHHHTCTGGGG-----------SCTTTCC
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh----hHHHHHHHHHHHcCCcchhC-----------CChHHCC
Confidence 44444433 3332221 11 267777765422 35678888888888754432 3335799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||||++|||||+++|++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..+
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999998754 7899999999999864 9999999987543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=316.44 Aligned_cols=193 Identities=20% Similarity=0.301 Sum_probs=153.4
Q ss_pred EEEEEEcCCCCCCccccceeEEEe-CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccCCCCC
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQ-SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-----------LIDGVDIKELD 470 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~ 470 (644)
++++.+|..+ -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3567889753 2455556555 899999999999999999999999999999999 67887765432
Q ss_pred hHHH------hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 471 PMYL------RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 471 ~~~l------r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.... +..+.++.|.+.++.+|+++++.... ..+++.++++..++.+. .+..+ ..|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~~~~~~l~~l~l~~~-------~~~~~----~~LSg 141 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID------ERGKKDEVKELLNMTNL-------WNKDA----NILSG 141 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC------CSSCHHHHHHHTTCGGG-------TTSBG----GGCCH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcch------hHHHHHHHHHHcCCchh-------hcCCh----hhCCH
Confidence 2222 22355666777788899999886432 23456667777776443 23333 46999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
|||||++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999999878999999999999875 599999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-32 Score=313.52 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=157.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHH-HhccC-------CC---------------
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML-LLRLY-------DP--------------- 454 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l-L~g~~-------~p--------------- 454 (644)
..|+++|+++. .|+||||+|++|+++||+|+||||||||++. |.|++ .|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35999999861 5999999999999999999999999999996 66553 22
Q ss_pred ---CCc-------EEEECCccCCCCCh----------HHHhcceEEEe---------cC---------------------
Q psy5743 455 ---QNG-------KILIDGVDIKELDP----------MYLRSQIGSVS---------QE--------------------- 484 (644)
Q Consensus 455 ---~~G-------~I~idg~~i~~~~~----------~~lr~~i~~V~---------Q~--------------------- 484 (644)
.+| .|.+||.++..... +.+|+.++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998865432 34444333222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC
Q psy5743 485 -PTLF-------------------------SGTIYENIL--------YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530 (644)
Q Consensus 485 -~~Lf-------------------------~gTIreNI~--------~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G 530 (644)
-..+ .-||.||+. +.... ...+++.+++ +.+ |
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~~~~~L---------~~~--g 718 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFRALDTL---------REV--G 718 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHHHHHHH---------HHT--T
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHHHHHHH---------HHc--C
Confidence 1111 125555553 33110 0111222233 333 3
Q ss_pred ccc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 531 FDT-IVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 531 l~T-~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
+.. ..+.....||||||||++|||||.++ |+||||||||++||..+.+.+.+.|+++. .++|+|+|||+++.++.
T Consensus 719 L~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~ 798 (842)
T 2vf7_A 719 LGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAA 798 (842)
T ss_dssp CTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred CCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHh
Confidence 433 35777889999999999999999996 79999999999999999999999998874 58999999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~ 630 (644)
||+|++| ++|+|++.|+++++++.+
T Consensus 799 aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 799 SDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999999 699999999999998754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=295.94 Aligned_cols=201 Identities=16% Similarity=0.200 Sum_probs=157.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--------------------------------------CCCcE
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--------------------------------------PQNGK 458 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--------------------------------------p~~G~ 458 (644)
.++++||++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999977664 45789
Q ss_pred EEECCccCCCCChHHHhcc-eEEEecCCCCCcccHHHHHhcCCCCCCCCCH-----------------------------
Q psy5743 459 ILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTK----------------------------- 508 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~-i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----------------------------- 508 (644)
+++||.+++..+..++++. +++++|++.++-.+-.++..+-+.. ...
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~---~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRR---VTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999988778888887 8999999999888777666554321 110
Q ss_pred -------------------------------------HHHHHHHHHHhhcc--chhh-------hhcCccc---cccCCC
Q psy5743 509 -------------------------------------SDIIHAAKEANAYG--FVID-------FKNGFDT---IVGERG 539 (644)
Q Consensus 509 -------------------------------------~~i~~a~~~a~l~~--~i~~-------lp~Gl~T---~ige~G 539 (644)
+++.+.++..++.+ +... -+.|.+. .++.++
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00111111111110 0000 0123333 455555
Q ss_pred CC--------CChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEE
Q psy5743 540 IM--------LSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 540 ~~--------LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I 609 (644)
.. ||||||||++|||+|+.+| ++||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i 365 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHH 365 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeE
Confidence 44 8999999999999999999 9999999999999999999999999987789999999999999999999
Q ss_pred EEE----eCCeEEEec
Q psy5743 610 CVL----DKGKIVEIG 621 (644)
Q Consensus 610 ivl----~~G~ive~G 621 (644)
++| ++|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-36 Score=325.06 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=154.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-E-EEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-K-ILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~-I~idg~~i~~~~~~~lr~ 476 (644)
-++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 366677777662 79999999999999999999999999999999999999 9 99998 1 377
Q ss_pred ceEEEecCCCCCc----ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS----GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~----gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.+++|||++.+|. .|++||+ ++... .....++++.++++.. |++.... ..+||||||||++
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHH
Confidence 8999999996554 5899999 76431 0001111111111111 4554443 6789999999999
Q ss_pred HHHH--HccCCCE----EEeec-ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch------HH-hhcCE-----EEEE
Q psy5743 552 IARA--LIKKSKI----LLLDE-ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS------TI-RKSNQ-----ICVL 612 (644)
Q Consensus 552 LARA--ll~~p~I----liLDE-aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~------~i-~~aD~-----Iivl 612 (644)
|||| |..+|++ ||||| |||+||.. ...+.+.+++. ++|+|+|+|+.+ .+ ..||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 77777777665 789999999987 33 56999 9999
Q ss_pred e-CCeEEEecChhHHhc
Q psy5743 613 D-KGKIVEIGSYAHLIK 628 (644)
Q Consensus 613 ~-~G~ive~Gt~~eLl~ 628 (644)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998853
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=308.99 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=158.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-cc----CC---CCCc-------------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RL----YD---PQNG------------- 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~----~~---p~~G------------- 457 (644)
.++++|++. ..|+||||+|++|+++||+|+||||||||++.++ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2599999999999999999999999999999864 22 11 2333
Q ss_pred EEEECCccCCCCC---hH-------HHh---------cceEEEecCCCC---------------------C---------
Q psy5743 458 KILIDGVDIKELD---PM-------YLR---------SQIGSVSQEPTL---------------------F--------- 488 (644)
Q Consensus 458 ~I~idg~~i~~~~---~~-------~lr---------~~i~~V~Q~~~L---------------------f--------- 488 (644)
.|.+||.++..-. +. ..| +..||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 21 112 346888885321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCC
Q psy5743 489 -------------------------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIML 542 (644)
Q Consensus 489 -------------------------~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~L 542 (644)
+-|+.||+.|+... ...++..++ ++.+ |+.. ..+.....|
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~~~~~---------L~~~--gL~~~~l~~~~~~L 846 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKRKLET---------LYDV--GLGYMKLGQPATTL 846 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHHHHHH---------HHHT--TCSSSBTTCCGGGC
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHHHHHH---------HHHc--CCCcccccCchhhC
Confidence 12566666665321 001112222 2332 4544 467778899
Q ss_pred ChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------
Q psy5743 543 SGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------ 612 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------ 612 (644)
|||||||++|||||.++| ++|||||||++||..+.+.+.+.|.++. .++|+|+|||+++.+..||+|++|
T Consensus 847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~ 926 (972)
T 2r6f_A 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 926 (972)
T ss_dssp CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCC
Confidence 999999999999999875 9999999999999999999999998874 589999999999999999999999
Q ss_pred eCCeEEEecChhHHhcCC
Q psy5743 613 DKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 613 ~~G~ive~Gt~~eLl~~~ 630 (644)
++|+|++.|+++++.+.+
T Consensus 927 ~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 927 RGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp SCCSEEEEESHHHHHTCT
T ss_pred CCCEEEEecCHHHHHhCc
Confidence 789999999999998753
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=265.00 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=147.7
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----------------------------------------------
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY----------------------------------------------- 452 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~----------------------------------------------- 452 (644)
++++++.+| .++|+||||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888899 99999999999999999998443
Q ss_pred ---CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCCC------------CHHHHHHHHH
Q psy5743 453 ---DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSV------------TKSDIIHAAK 516 (644)
Q Consensus 453 ---~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~------------~~~~i~~a~~ 516 (644)
.+.+|.+++||.+++..+...+...+++.+|+..++ .|+|.+|+.....+.... +.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345679999999987666777777899999998766 899999997642110000 1112222211
Q ss_pred HHh------------h-ccchhhhhcCccccccC------CCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCC
Q psy5743 517 EAN------------A-YGFVIDFKNGFDTIVGE------RGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALD 573 (644)
Q Consensus 517 ~a~------------l-~~~i~~lp~Gl~T~ige------~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD 573 (644)
..- + .+....++.|+++.++. ....||||||||++|||||. ++|++||||||||+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 110 0 00112356677776543 34689999999999999995 7899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEE--EEEeCCeE-EEecChhHH
Q psy5743 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI--CVLDKGKI-VEIGSYAHL 626 (644)
Q Consensus 574 ~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I--ivl~~G~i-ve~Gt~~eL 626 (644)
+.+...+.+.|.++.+++|+|+|||+++.+..||++ ++|++|+. +...+-+|.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 999999999999987788999999999988999987 88888854 344444443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-30 Score=254.76 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=102.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
..+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.++||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689995 89999999999999999999999999 99999994 333321 2234678899999998 67
Q ss_pred HH-hcCCCC----CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 495 NI-LYGVND----SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 495 NI-~~g~~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
|+ .++.+. ....+.+++.++++. |+ |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l~~------------gl-------------Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLMEA------------GI-------------VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHHHT------------TS-------------EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHh------------CC-------------chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 77 443110 000011111111111 11 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
|+ +...+.+.|.++.+++|+| |||+++.+. ++...++|..
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 99 8888999898874578888 999988654 4555667754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-32 Score=281.68 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=150.3
Q ss_pred CcCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc-cCCCCCccEE---------E
Q psy5743 334 TITVGNLSSFLLYAAYIGISIGGLSN-FYSELNKGLGACHRLWEIMEREPLISTSGGKF-FSHSLKGEID---------F 402 (644)
Q Consensus 334 ~~t~g~l~a~~~~~~~~~~~l~~l~~-~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~-~~~~~~~~I~---------~ 402 (644)
.+|.|.+.+++.+...+..| .+.. ....+..+..+.+|+.++++.|... ...... ......+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999998887766554 2322 2223333334556877777543321 110010 0011123455 7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
+|++| | +++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 77777 7 258999999999999999999999999999999999999999999999975 333333444455442
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I 562 (644)
| |||+||++|||||.++|++
T Consensus 224 -----------------------------------------------------g-------gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 224 -----------------------------------------------------G-------GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp -----------------------------------------------------B-------TTBCHHHHHHHHTTSCCSE
T ss_pred -----------------------------------------------------C-------CChhHHHHHHHHhhhCCCE
Confidence 0 8999999999999999999
Q ss_pred EEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 563 LLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 563 liLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++|||||+. .+.+.|+.+..++ |+|+++|+++....||||++|++|+.
T Consensus 244 lildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 244 IILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 999999992 2455666665565 79999999999999999999998863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-31 Score=259.44 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=124.4
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEEEecCCCCC-------
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGSVSQEPTLF------- 488 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~V~Q~~~Lf------- 488 (644)
.|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ...++.++|++|++.+|
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 99999 888765433 33567899999987555
Q ss_pred ----cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH-----HHHHccC
Q psy5743 489 ----SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI-----ARALIKK 559 (644)
Q Consensus 489 ----~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL-----ARAll~~ 559 (644)
.+++++| .+|. .++++.++++.... ..+. ..|||||+||++| ||+++++
T Consensus 88 ~~l~~~~~~~~-~~g~------~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~ 145 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT------LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKP 145 (218)
T ss_dssp CEEEEEEETTE-EEEE------EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEEC
T ss_pred chhhhhhcccc-cCCC------cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3455555 4442 24556666554321 1221 6799999999999 9999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
|++++|||||+++|.++|..|.+.+.+..+++| ++| +..||.|+|+++
T Consensus 146 ~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp SCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred cCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999999988777777 788 578999988865
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=226.24 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=109.4
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC--CCcccHHHHHh
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENIL 497 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf~gTIreNI~ 497 (644)
|+||++++||+++|+||||||||||++++.+-. ..+ +.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965322 222 233344 67778753 22333333221
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHH
Q psy5743 498 YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577 (644)
Q Consensus 498 ~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e 577 (644)
... ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ---------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 64 ---------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp ---------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred ---------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 111 122345666655544 34599999999999999999999999999999999955
Q ss_pred ----------------HHHHHHHHHHc-CCceEEEEccCchHHhhcCEEE
Q psy5743 578 ----------------YLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 578 ----------------~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+.+.+.|+++. ++.|+|+|||+++.+..++++.
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 77777765543 4899999999999998887753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=238.61 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=76.1
Q ss_pred CCCCCCChhHHHHHHHHHHHc------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEE
Q psy5743 537 ERGIMLSGGQKQRIAIARALI------KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~I 609 (644)
....+||||||||++|||||. .+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345679999999999999998 7999999999999999999999999998874 479999999999999999999
Q ss_pred EEEeCCeEEE
Q psy5743 610 CVLDKGKIVE 619 (644)
Q Consensus 610 ivl~~G~ive 619 (644)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-28 Score=229.83 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=109.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 567787665443225678999999987 223333 1100
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH-----HccCCCEEEeec--ccCCCCHHHHHHHHH
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA-----LIKKSKILLLDE--ATSALDAENEYLVQS 582 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA-----ll~~p~IliLDE--aTSaLD~~~e~~i~~ 582 (644)
+ + + .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+
T Consensus 63 ---------~---~----~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 63 ---------F---F----T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ---------T---C----C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ---------c---C----C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0 0 0 1145677788999999999999996 999999999999 999999999999999
Q ss_pred HHHHHcCCceEEEEcc---CchHHhh-cCEEEEEeCCeEEE
Q psy5743 583 AIEKLIEGKTVLTIAH---RLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 583 ~l~~~~~~~TvI~IaH---rl~~i~~-aD~Iivl~~G~ive 619 (644)
.+.+ .+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 125 ~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8876 3677999996 5556543 565 5677776
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-28 Score=261.68 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=159.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCC----
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELD---- 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~---- 470 (644)
+.++++|+++.|+. ...+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 35799999 999999999999999999999999999999999999999998 565432
Q ss_pred -hHHHhcceEEEecC-C-CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 471 -PMYLRSQIGSVSQE-P-TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 471 -~~~lr~~i~~V~Q~-~-~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
...+++.++||+|+ . ....-|+.+|+++.. +.... +......++ +...+|||||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a---------e~~~~-~~~~v~~~l------------d~l~~lS~g~- 263 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA---------EDFRD-RGQHVLLIM------------DSLTRYAMAQ- 263 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH---------HHHHT-TTCEEEEEE------------ECHHHHHHHH-
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH---------HHHHh-CCCCHHHHH------------HhHHHHHHHH-
Confidence 45688899999995 3 344678999997641 11110 001111111 2356799999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-----Cc-----eEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-----GK-----TVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-----~~-----TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
||++|| +++|++ |++||+.+...+.+.+++..+ ++ |++++||+++ ...||++++|.+|+|
T Consensus 264 qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 264 REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHI 333 (438)
T ss_dssp HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEE
T ss_pred HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEE
Confidence 999999 899998 999999999999999988755 43 9999999999 888999999999999
Q ss_pred EEecChhHHhc
Q psy5743 618 VEIGSYAHLIK 628 (644)
Q Consensus 618 ve~Gt~~eLl~ 628 (644)
+..|+++++..
T Consensus 334 vl~~~~~~~~~ 344 (438)
T 2dpy_A 334 VLSRRLAEAGH 344 (438)
T ss_dssp EECHHHHHTTC
T ss_pred EEeCCHHHccC
Confidence 99999988753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=246.17 Aligned_cols=107 Identities=25% Similarity=0.410 Sum_probs=93.1
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~ 605 (644)
|++.. .+..-..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++.. +.|+|+|+||++.++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 55533 56667799999999999999999999 59999999999999999999999888753 7899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCCCcHHHH
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
||+|++| ++|+++..|+++++.+.+.....+
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~ 483 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQ 483 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHH
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHH
Confidence 9999999 799999999999998753444433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-26 Score=248.22 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=134.7
Q ss_pred CccccceeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 415 AVILNDLSLKIQSGS--------------------MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 415 ~~vL~~isl~i~~G~--------------------~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+.+|++|||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998753
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh--HHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG--QKQRIAI 552 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG--QkQRiaL 552 (644)
| .++++|++...+-|+.||+.++.+ ++++.+.++..++.+. +..+ . |||| ||||++|
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~------~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST------NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDI 167 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS------SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch------HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHH
Confidence 1 278999986567899999988743 2345667777765432 2222 2 8999 9999999
Q ss_pred HHHHcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHc----------CCceEEEEccCchH--Hh-hcCEE
Q psy5743 553 ARALIK----------KSKILLLDEATSALDAENEYLVQSAIEKLI----------EGKTVLTIAHRLST--IR-KSNQI 609 (644)
Q Consensus 553 ARAll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~----------~~~TvI~IaHrl~~--i~-~aD~I 609 (644)
|||+.+ +|++++||||||+||+.++..+.+.|+++. .+.++++-||.++- +. -+|+|
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999988887763 12567778998875 43 36666
Q ss_pred E
Q psy5743 610 C 610 (644)
Q Consensus 610 i 610 (644)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-27 Score=242.66 Aligned_cols=201 Identities=15% Similarity=0.133 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEE-----------------------E
Q psy5743 369 GACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK-----------------------I 425 (644)
Q Consensus 369 ~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------i 425 (644)
.++.|+.+.+..+..+.+. . ......+.|+++||++.|. |+++++++. +
T Consensus 16 ~~~~~l~~~~~~~~~~~~~-~--~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 16 RQWRALRMSTPLALTEEEL-V--GLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHGGGTTCCCCCCHHHH-H--TTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHhcCCCCCCHHHH-H--hccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 3566666555443221111 0 1122345699999999993 567777765 8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC----C
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV----N 501 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~----~ 501 (644)
++|+++||+||||||||||+++|.|+++|++|. +++++|+||++++..|++||+.+.. |
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998664 4799999999999999999998642 2
Q ss_pred CCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHH
Q psy5743 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580 (644)
Q Consensus 502 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i 580 (644)
+ ..+.+.+.+.++..+ .|.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|...
T Consensus 151 ~--~~d~~~~~~~L~~l~---------~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---- 211 (312)
T 3aez_A 151 E--SYNRRALMRFVTSVK---------SGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---- 211 (312)
T ss_dssp G--GBCHHHHHHHHHHHH---------TTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS----
T ss_pred h--HHHHHHHHHHHHHhC---------CCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch----
Confidence 1 133444554444443 3433 443 4799999999999999999999999999999998632
Q ss_pred HHHHHHHcCCceEEEEccCchHH--hhcCEEEEEeCCe
Q psy5743 581 QSAIEKLIEGKTVLTIAHRLSTI--RKSNQICVLDKGK 616 (644)
Q Consensus 581 ~~~l~~~~~~~TvI~IaHrl~~i--~~aD~Iivl~~G~ 616 (644)
..+.+.+ ..+|+|+|..+.. +..+|.+.+.+|+
T Consensus 212 -~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 -LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 1233332 3568888887664 3456666565544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-27 Score=238.10 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=152.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i 478 (644)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 345566542 4899999 9999999999999999999999999999998 999999999987553 3456
Q ss_pred EEEec-----CCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccch-------------------------
Q psy5743 479 GSVSQ-----EPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFV------------------------- 524 (644)
Q Consensus 479 ~~V~Q-----~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i------------------------- 524 (644)
++++| ++..|..+|+.++.. +|+. ++.|.+.++++++.+.-...+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 78888 777889999999987 3541 112777777776655421111
Q ss_pred ----hhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE--EEeecccCCCCHHH---------HHHHHHHHHHHcC
Q psy5743 525 ----IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI--LLLDEATSALDAEN---------EYLVQSAIEKLIE 589 (644)
Q Consensus 525 ----~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I--liLDEaTSaLD~~~---------e~~i~~~l~~~~~ 589 (644)
..+++++++.|++++..+||| ||+++||+++.+|+| +|+||+||++|... +..+++++....+
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQ 229 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHT
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHc
Confidence 136789999999999999999 999999999999999 99999999999873 5578888988889
Q ss_pred CceEEEEccCch
Q psy5743 590 GKTVLTIAHRLS 601 (644)
Q Consensus 590 ~~TvI~IaHrl~ 601 (644)
++|.+.++||++
T Consensus 230 g~t~~~~a~r~~ 241 (261)
T 2eyu_A 230 GLITLEDAMEAS 241 (261)
T ss_dssp TSSCHHHHHHHC
T ss_pred CCCCHHHHHHHh
Confidence 999999999987
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-26 Score=245.21 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=149.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEec-----CCCCCc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQ-----EPTLFS 489 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q-----~~~Lf~ 489 (644)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4577765 7899999999999999999999999999998 899988887764 2 36778999999 899999
Q ss_pred ccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccch-----------------------------hhhhcCcccccc
Q psy5743 490 GTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFV-----------------------------IDFKNGFDTIVG 536 (644)
Q Consensus 490 gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i-----------------------------~~lp~Gl~T~ig 536 (644)
++|++|++. +|+. +.-|.+.++.+++.++....+ ..+|.++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4651 111778888888877642211 125789999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEeecccCCCCHH----H-----HHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKI--LLLDEATSALDAE----N-----EYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~I--liLDEaTSaLD~~----~-----e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++..+||| ||+++||+++.+|+| +|+||+||++|.. + +..+++++....+++|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 999999999999999 9999999999965 3 45688888888899999999999984
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-26 Score=216.07 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=89.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCC---hHHHh-cceE----EEecCCCCCcccHHHHHh
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELD---PMYLR-SQIG----SVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~---~~~lr-~~i~----~V~Q~~~Lf~gTIreNI~ 497 (644)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .++|| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 78898 4788 899999988 211
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhccchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 498 YGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 498 ~g~~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
+ + ++. .+++++++.+ +| ||||.|+|+ |||||||||+||||++++|++.
T Consensus 77 -~-------~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-------S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-------C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-------C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 221 7799999999 99 999999995 9999999999999999999874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-25 Score=225.62 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=98.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~ 508 (644)
++||+||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456789999999998865 999999999643111223
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+.+. .++...++ ..||||||||+++|||+.. +++|||||++||+.. ..+++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---
Confidence 34443333 22322332 2599999999999999875 999999999999987 33444443
Q ss_pred CCceEEEEccCchHHh
Q psy5743 589 EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 589 ~~~TvI~IaHrl~~i~ 604 (644)
+..++|+|.|+.+++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987663
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-24 Score=219.32 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=128.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHH--hcceEEEecCCC-CCc-c
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYL--RSQIGSVSQEPT-LFS-G 490 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf~-g 490 (644)
+++||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999987653 2344 457999999987 654 5
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEA 568 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEa 568 (644)
|++||+.++... ..+ . ..++.+++.+. .+..++ .|| |||++||||+..+|+ +|+|| |
T Consensus 171 ~v~e~l~~~~~~--~~d-~---~lldt~gl~~~-------~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 171 VLSKAVKRGKEE--GYD-V---VLCDTSGRLHT-------NYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHT--TCS-E---EEECCCCCSSC-------CHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHc--CCc-c---hHHhcCCCCcc-------hhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 899999875211 011 0 01112222111 122222 377 999999999999999 99999 9
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHH-hhcCEEEEEeCCeEE
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAH---------RLSTI-RKSNQICVLDKGKIV 618 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaH---------rl~~i-~~aD~Iivl~~G~iv 618 (644)
|+++|+.+.. +.+.+ ..+.|+|++|| .++.+ ...+.|.++..|+.+
T Consensus 230 tsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 230 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999998653 22322 13789999999 44555 346899999999753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=214.53 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE
Q psy5743 541 MLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
.|||||+||++|||+|. .+|+|||||||||+||+.....+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998863 89999999 454 8999999
Q ss_pred EeCCeEEEecChhHHh
Q psy5743 612 LDKGKIVEIGSYAHLI 627 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl 627 (644)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-25 Score=218.35 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=134.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCccc
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT 491 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT 491 (644)
+++|+.++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88998 699999999999999876 7999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH-HHccCCCEEEeecccC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR-ALIKKSKILLLDEATS 570 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR-All~~p~IliLDEaTS 570 (644)
+++|+ +| .++++++++++.....-+ .-.|+|+++.... ++ .|| +++++|++++|||+||
T Consensus 76 ~~~n~-~g------~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL-YG------TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE-EE------EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc-CC------CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHH
Confidence 99998 77 357889988876433222 2347788887532 22 677 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 571 aLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|.++|+.|.+.|.+..++ +.++| ++ ..+|+|+++++ ...++++|.
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~ 182 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLK 182 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHH
Confidence 99999999999999877554 46788 55 89999999985 234566664
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-23 Score=216.12 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=129.0
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHH--hcceEEEecCCC-CC-cc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYL--RSQIGSVSQEPT-LF-SG 490 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf-~g 490 (644)
..+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986643 2334 467999999987 55 46
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEA 568 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEa 568 (644)
|++||+.++... ..+. ..++.+++.+. .+..++ .|| |||++||||+..+|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d~----~lldt~Gl~~~-------~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYDV----VLCDTSGRLHT-------NYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCSE----EEEECCCCSSC-------CHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCHH----HHHHhcCCChh-------hhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 899999875311 0110 01112222111 112222 377 999999999999999 99999 9
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHH-hhcCEEEEEeCCeE
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAH---------RLSTI-RKSNQICVLDKGKI 617 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaH---------rl~~i-~~aD~Iivl~~G~i 617 (644)
|+++|+.+.. +.+.+ ..+.|+|++|| .++.+ ...+.|..+..|+.
T Consensus 287 ttglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998663 22322 13799999999 34555 34679999999974
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-23 Score=217.77 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=149.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC-------CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-------LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-------~~~ 471 (644)
-++.+++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4889999999963 35799999 9999999999999999999999999999999999999999975221 233
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccc-ccCCCCCCChhHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI-VGERGIMLSGGQKQRI 550 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRi 550 (644)
..+++.+.+++|.+. ...+++..+.....+.++..+ .|.+.. +-+.-.+||+|| ||+
T Consensus 122 ~~~~~~v~~~~~~~~-------------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-------------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp HHHTTEEEEEECTTS-------------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHH
T ss_pred hhhhceEEEEECCCC-------------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHH
Confidence 345566777776431 113444444444444443322 233321 124456899999 999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---Cc-----eEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GK-----TVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~-----TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++| +.+|++ |+++|+.....+.+.+++..+ +. |++++||+++ -.-||++++|.+|+|+..|+
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHH
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCC
Confidence 999 688888 999999999999999988752 66 8999999999 67799999999999999998
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
.+++
T Consensus 250 l~~~ 253 (347)
T 2obl_A 250 LAEE 253 (347)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 8776
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-24 Score=204.53 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=123.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.+++ .+++++++++|+. +|+ ++|+...... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~---~- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLE---P- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCC---C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccccc---C-
Confidence 78999999999999999999999999 999 999999887654 5789999999986 443 2333211000 0
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH-HHHH---HHccCCCEEEeec--ccCCCCHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI-AIAR---ALIKKSKILLLDE--ATSALDAENEYLVQ 581 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi-aLAR---All~~p~IliLDE--aTSaLD~~~e~~i~ 581 (644)
. +...+..+|+.|..+|||||+++ +++| |+.++|+++|||| ||..+|....+.+.
T Consensus 69 -------------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~ 129 (189)
T 2i3b_A 69 -------------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR 129 (189)
T ss_dssp -------------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH
T ss_pred -------------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH
Confidence 0 11234488999999999999999 5666 7899999999999 89889988777776
Q ss_pred HHHHHHcCCceEEE--Ec--cCchHHhhcCEEEEEeCCeEEEec
Q psy5743 582 SAIEKLIEGKTVLT--IA--HRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 582 ~~l~~~~~~~TvI~--Ia--Hrl~~i~~aD~Iivl~~G~ive~G 621 (644)
+.+.+ .+|+|+ |+ ||.+ ....|+|..+++|+|++-.
T Consensus 130 ~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 130 QTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 66653 345554 44 9886 6678999999999998754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-26 Score=239.53 Aligned_cols=224 Identities=16% Similarity=0.040 Sum_probs=159.9
Q ss_pred HHHHHHHHHHc-CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCcc-CCCCCcc
Q psy5743 322 VLYYGGVMVSY-ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFF-SHSLKGE 399 (644)
Q Consensus 322 vl~~g~~~v~~-g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~-~~~~~~~ 399 (644)
+.+.|++.+.. |.+|.|.+.++..+...+..| .+......++.+..+.+|+.+++ +|..+....... .....+.
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34556666665 889999999999888777655 33333333344444567888877 332211110000 0111234
Q ss_pred E---------EEEEEEEE---cCCCCCCccc---------cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 400 I---------DFNNIRFS---YPSRPDAVIL---------NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 400 I---------~~~~vsf~---Y~~~~~~~vL---------~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+ +|+||+|+ |++. ++++| +++||++++|+.++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 89999999 9642 34566 9999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCChHHHhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccc
Q psy5743 459 ILIDGVDIKELDPMYLRSQIGSVS-QEPTL---FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~i~~V~-Q~~~L---f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ 534 (644)
|.++|. .++....+|+.+++++ |++.+ +..|+++||..+... ..+..+...++.+.+++++..+|.|++|.
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~---~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM---KPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS---CCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc---CCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 999985 4666666788999999 99886 889999999988543 22333333444466677899999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHH
Q psy5743 535 VGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 535 ige~G~~LSGGQkQRiaLARA 555 (644)
+++.+.+-+.+..+|+.....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 999988889999999987764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-23 Score=203.33 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=109.0
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEEEecCCCCCcc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGSVSQEPTLFSG-T 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~V~Q~~~Lf~g-T 491 (644)
..++++| .+|++||+++|+||||||||||+++|+|++++ |.+++ ++...++ ...++.++|++|++.+|.. |
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcc-cccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3578888 79999999999999999999999999999963 44443 2211111 2236789999999988763 5
Q ss_pred HHHHHhcCCC-----CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH---HHccCCCEE
Q psy5743 492 IYENILYGVN-----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR---ALIKKSKIL 563 (644)
Q Consensus 492 IreNI~~g~~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR---All~~p~Il 563 (644)
+.+|+..... .....+.+++.+.++... +.+. ...++|.+.++-..++ ||+.+|+++
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~ 145 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGV--PVLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQ 145 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHH
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCC--eEEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHH
Confidence 5566532100 000023344443333220 0000 0112233333333333 899999999
Q ss_pred EeecccCCC----CHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe
Q psy5743 564 LLDEATSAL----DAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLD 613 (644)
Q Consensus 564 iLDEaTSaL----D~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~ 613 (644)
+|||||+++ |+...+.+.+.+.++. .+.|+|+|||+++.+. .||+|++|.
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998 6678888988888874 3789999999999875 599999985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-21 Score=224.62 Aligned_cols=166 Identities=25% Similarity=0.417 Sum_probs=120.7
Q ss_pred HHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHh
Q psy5743 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEAN 519 (644)
Q Consensus 444 Ll~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~ 519 (644)
+..+.-+.+.|..|+|.++|++|.++... |+.+|+.+...-. ...--.++.+..+.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~------------------~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-- 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTEL------------------SISEELEFLKNLNLTEREREIVGELLKEIEK-- 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHS------------------BHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH--
T ss_pred chhcccccCChHhcCcEECCccHHHhhhC------------------CHHHHHHHHHhccCcHHHHHHHHhhHHHHHH--
Confidence 34455667889999999999988654333 4455544322100 00001111111111
Q ss_pred hccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEE
Q psy5743 520 AYGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLT 595 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~ 595 (644)
..+++..+ |++.. .......||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++. .++|+|+
T Consensus 444 ~~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 444 RLEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11223332 44432 355567899999999999999999887 999999999999999999999999875 3789999
Q ss_pred EccCchHHhhcCEEEEE------eCCeEEEecChhHHhcCCC
Q psy5743 596 IAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 596 IaHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~~~ 631 (644)
|+|+++.+..||+|++| ++|+|++.|+++|+++.+.
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 99999999999999999 8999999999999987643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-23 Score=202.73 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=116.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc---cHHHHHhc--C
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG---TIYENILY--G 499 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---TIreNI~~--g 499 (644)
.++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 68999999999854 56666554 3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC-------C
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA-------L 572 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa-------L 572 (644)
.+. ..+.+++.++++..++.+++.. | ++++..|+++. |+||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~--~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD--AFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG--GBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh--hhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 332 3567888999998888776654 4 55555554432 57899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHc--CCceEEEEccCc
Q psy5743 573 DAENEYLVQSAIEKLI--EGKTVLTIAHRL 600 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~--~~~TvI~IaHrl 600 (644)
|+.++..+.+.+.+.. +++|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999887653 588999999984
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-23 Score=217.99 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=110.0
Q ss_pred cccceeEEEeC--CCEEEEECCCCCcHHHHHHHHhccCCCCC----cEEEE----CCccCCCCChHHHhcceEEEecCCC
Q psy5743 417 ILNDLSLKIQS--GSMTSVIGSSGSGKSTLAMLLLRLYDPQN----GKILI----DGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 417 vL~~isl~i~~--G~~vaIvG~SGsGKSTLl~lL~g~~~p~~----G~I~i----dg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC--ccc--------cccCCCCCCChhHHHHHHHHHHH
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG--FDT--------IVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G--l~T--------~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++|||.+++++ ..+.+.+..........++..++.+ ++. +..++|.++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTD---FITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp HHHHHHCSSEEEESSC---HHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred HHHHhccCCEEEEeCC---chHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 9999999999998653 4455555555444455566666644 443 22367788888999999999988
Q ss_pred ---cc--CCCEEEeeccc
Q psy5743 557 ---IK--KSKILLLDEAT 569 (644)
Q Consensus 557 ---l~--~p~IliLDEaT 569 (644)
++ +++|+++||||
T Consensus 312 ~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHHHGGGCCCEEEECSS
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 76 78899999886
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-21 Score=196.99 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=124.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
++|+++++.+++|+.++|+||+|||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999988 77655433 3566777776666655432 2334
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH-HHHHHHHHHHccCCCEEEeecccC---
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ-KQRIAIARALIKKSKILLLDEATS--- 570 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ-kQRiaLARAll~~p~IliLDEaTS--- 570 (644)
|+..+. .++++..++++.. +...+-+ +.+....+|.+| +||+. |+|+..+|+++|+||||+
T Consensus 97 ~l~~~~-----~~~~~~~~~~~~~-----l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-----IENGKFDQWFDEL-----FGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-----HHHTHHHHHHHHH-----HSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-----CCHHHHHHHHHHH-----hccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 554431 2233333332221 1111111 233334689999 77777 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHcC--CceEEEEccCc--h--------------------HH-hhcCEEEEEeCCeE
Q psy5743 571 A---LDA-ENEYLVQSAIEKLIE--GKTVLTIAHRL--S--------------------TI-RKSNQICVLDKGKI 617 (644)
Q Consensus 571 a---LD~-~~e~~i~~~l~~~~~--~~TvI~IaHrl--~--------------------~i-~~aD~Iivl~~G~i 617 (644)
+ +|. .....+.+.|+++.+ ++|+|+++|.. + .+ ..||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 4 344 455677777877643 78999999995 3 34 57999999999875
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=207.45 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 540 IML-SGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~L-SGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
..| |||||||++||||++.+| ++|||||||++||..+...|.+.|.++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 446 999999999999999999 9999999999999999999999999887789999999999999999999999654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-22 Score=220.24 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=119.1
Q ss_pred CCccccceeE-EEeCCCEEEEECCCCCcHHHHHHH--HhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc
Q psy5743 414 DAVILNDLSL-KIQSGSMTSVIGSSGSGKSTLAML--LLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 414 ~~~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~l--L~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g 490 (644)
..++|++||+ .+++|++++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6899999999999999883 223445567899999986521
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-cCCCEEEeeccc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-KKSKILLLDEAT 569 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-~~p~IliLDEaT 569 (644)
+|+.+.... .+++.+++++..++.+ +.-.++++|- .+|++++|||||
T Consensus 101 ---~~l~~~~~~----~~~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~t 148 (525)
T 1tf7_A 101 ---GKLFILDAS----PDPEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSVT 148 (525)
T ss_dssp ---TSEEEEECC----CCSSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECST
T ss_pred ---CcEEEEecC----cccchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCHH
Confidence 223222110 0000001111112211 2222333332 358899999999
Q ss_pred CC-----CCHHHHHHHHHHHHHHc-CCceEEEEccCchHH---------hh-cCEEEEEeCC
Q psy5743 570 SA-----LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI---------RK-SNQICVLDKG 615 (644)
Q Consensus 570 Sa-----LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i---------~~-aD~Iivl~~G 615 (644)
+. +|+...+.+.+.++++. .++|+|+|+|+++.+ .. ||+|++|++|
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 85 58888888888887764 489999999999874 44 9999999983
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-20 Score=217.20 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=121.9
Q ss_pred ccEEEEE-----EEEEcCCCCCCccccceeEEEeC-------CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 398 GEIDFNN-----IRFSYPSRPDAVILNDLSLKIQS-------GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 398 ~~I~~~~-----vsf~Y~~~~~~~vL~~isl~i~~-------G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
+.|+++| |++.|++ +.++++|++|++++ |++++|+||||||||||++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 35799999999987 999999999999999999999 99864
Q ss_pred CCCCChHHHhcceE-EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 466 IKELDPMYLRSQIG-SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 466 i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
..++| ||||++. .-|+.|||..- . ++.+.+. .| -..+|+
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r------i------------g~~d~~~---~~--------~stf~~ 854 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR------L------------GASDRIM---SG--------ESTFFV 854 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE------C------------C--------------------CHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH------c------------CCHHHHh---hc--------hhhhHH
Confidence 34677 9999973 55777776421 1 1111111 12 235677
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHH-HHHHHHHHHHHc-C-CceEEEEccCchHHhh-cCEEEEEeCCeEE--
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLI-E-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV-- 618 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~-e~~i~~~l~~~~-~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-- 618 (644)
|+++ +++||++..+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. +|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEE
Confidence 6664 999999999999999999999999986 455666676664 3 7899999999998865 8998887 58887
Q ss_pred EecCh
Q psy5743 619 EIGSY 623 (644)
Q Consensus 619 e~Gt~ 623 (644)
+.|+.
T Consensus 933 ~~~~~ 937 (1022)
T 2o8b_B 933 VENEC 937 (1022)
T ss_dssp -----
T ss_pred EecCc
Confidence 55544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=211.80 Aligned_cols=153 Identities=19% Similarity=0.355 Sum_probs=117.3
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHH-------HHHHHHHHhhccch
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD-------IIHAAKEANAYGFV 524 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~-------i~~a~~~a~l~~~i 524 (644)
+.|....|.++|++|.++ ...||.|++.|..+- ..+.++ +.+..+.. +++
T Consensus 432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l--~l~~~~~~i~~~~~~ei~~Rl---~~L 488 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGL--ELTEKEAQIARLILREIRDRL---GFL 488 (972)
T ss_dssp BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHC--CCCHHHHHHSHHHHHHHHHHH---HHH
T ss_pred cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH---HHh
Confidence 467888999999876543 456888888886432 133311 11111111 122
Q ss_pred hhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCc
Q psy5743 525 IDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL 600 (644)
Q Consensus 525 ~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl 600 (644)
..+ |++.. ....-..|||||||||+||+||..+| ++|||||||++||+.....+.+.|+++. .+.|+|+|+||+
T Consensus 489 ~~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 489 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred hhC--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 322 44432 35556789999999999999999985 9999999999999999999999998875 478999999999
Q ss_pred hHHhhcCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 601 STIRKSNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 601 ~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
+.++.||+|++| ++|+++..|+++++++.
T Consensus 567 ~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 567 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999 79999999999999864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=185.47 Aligned_cols=74 Identities=24% Similarity=0.406 Sum_probs=67.9
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQ------RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..||||||| |+++|||+..+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+.+....||+|++|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 579999999 6788899999999999999999999999999999998864 467999999999988999999998
Q ss_pred e
Q psy5743 613 D 613 (644)
Q Consensus 613 ~ 613 (644)
+
T Consensus 327 ~ 327 (339)
T 3qkt_A 327 S 327 (339)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-21 Score=190.21 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=108.5
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
+.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.+++++|+++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 555544 367789999999754456899
Q ss_pred HHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 494 ENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 494 eNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
+|+.+..... ...+.+++.+.++. +..+.+..+ ..||+||+||+++ |++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9987532210 01223333333332 333445444 4699999999988 688999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEccCc-hHHhhc-CEEEEEeCCeEEEecChhHHh
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKS-NQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl-~~i~~a-D~Iivl~~G~ive~Gt~~eLl 627 (644)
....|.. +.+. .+.|++++||.. ...+.. +.+ ++|+ +.+++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777753 2232 378999999973 333333 334 6664 566665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-20 Score=198.42 Aligned_cols=166 Identities=22% Similarity=0.230 Sum_probs=122.5
Q ss_pred cccce-eEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCC----cE-EEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 417 ILNDL-SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQN----GK-ILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 417 vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~----G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
.|+++ ++.+++|++++|+||+|||||||++.+++.+ +|++ |. |++|+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999999 6666 68 999997752 256789999999999
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-------cCCC
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-------KKSK 561 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-------~~p~ 561 (644)
..++.+||.+... .+ |++|+|++.+||+++ .+|+
T Consensus 193 ~~~v~~ni~~~~~----~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ 233 (349)
T 1pzn_A 193 PDEVLKHIYVARA----FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVK 233 (349)
T ss_dssp HHHHGGGEEEEEC----CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEE
T ss_pred HHHHhhCEEEEec----CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCC
Confidence 9999999988742 11 456788888888887 6899
Q ss_pred EEEeecccCCCCHHH------------HHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 562 ILLLDEATSALDAEN------------EYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 562 IliLDEaTSaLD~~~------------e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|+||||+.+|++. -+.+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|
T Consensus 234 llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 234 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 999999999999863 234444555543 37899999998775532 345677788988888877766
Q ss_pred h
Q psy5743 627 I 627 (644)
Q Consensus 627 l 627 (644)
.
T Consensus 314 ~ 314 (349)
T 1pzn_A 314 Y 314 (349)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=201.04 Aligned_cols=169 Identities=16% Similarity=0.065 Sum_probs=123.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++.+++++.|++ - ..+| +..+++|++++|+|++|||||||++.++|...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~-l-d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR-L-DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH-H-HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH-H-HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 455666665532 0 1233 3489999999999999999999999999999875 53 1245
Q ss_pred EEecCCCCCcccHHHHHh-cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSGTIYENIL-YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~-~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+++|++. .++++|.. +| .+.+++ ...++ ..........|||||+||+++||++..
T Consensus 315 ~~~ee~~---~~l~~~~~~~g------~~~~~~----~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~ 370 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG------MDFEEM----ERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDF 370 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS------CCHHHH----HHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCH---HHHHHHHHHcC------CCHHHH----HhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhh
Confidence 6667762 35666653 22 232221 12222 222233345799999999999999999
Q ss_pred CCCEEEeecccCCCCHH-----HHHHHHHHHHHHc-CCceEEEEccCc----------hHH-hhcCEEEEEeCCe
Q psy5743 559 KSKILLLDEATSALDAE-----NEYLVQSAIEKLI-EGKTVLTIAHRL----------STI-RKSNQICVLDKGK 616 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~-----~e~~i~~~l~~~~-~~~TvI~IaHrl----------~~i-~~aD~Iivl~~G~ 616 (644)
+|+++|+| ||++||.. ..+.+.+.++.+. .+.|+|+|+|.. ..+ ..||+|++|++|+
T Consensus 371 ~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 371 KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999 99999998 7888877776653 478999999998 555 4589999999887
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-19 Score=191.22 Aligned_cols=73 Identities=26% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEe
Q psy5743 541 MLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.||||||||++|||+|. ++|+++|||||||+||+.+...+.+.|.+... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999999999999999986
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-19 Score=161.99 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=76.5
Q ss_pred Cccccc-----cCCCCCCChhHHHHHHHH------HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEc
Q psy5743 530 GFDTIV-----GERGIMLSGGQKQRIAIA------RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA 597 (644)
Q Consensus 530 Gl~T~i-----ge~G~~LSGGQkQRiaLA------RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~Ia 597 (644)
+|++.+ .....+||||||||++|| ||+.++|+++||||||++||+++...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 234578999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchHHhhcCEEEEE--eCCeE
Q psy5743 598 HRLSTIRKSNQICVL--DKGKI 617 (644)
Q Consensus 598 Hrl~~i~~aD~Iivl--~~G~i 617 (644)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999877889999999 56643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=206.97 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=115.0
Q ss_pred CccEEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEECCccCCCCChHH
Q psy5743 397 KGEIDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~~~ 473 (644)
.+.|++++. ++|-- .++++++|+||+ |++++|+||||||||||+++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456999988 44421 236799999999 99999999999999999999999974 7778753 1 1
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.+..+++++| +|.. |+.||+.. ++|+|++|++.+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~------------------------------------------g~S~~~~e~~~l 646 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG------------------------------------------GKSTFMVEMEEV 646 (765)
T ss_dssp SEEEECCCSE---EEEECCC------------------------------------------------CCSHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh------------------------------------------cccHHHHHHHHH
Confidence 2456888887 5543 55665532 258899999999
Q ss_pred HHHH--ccCCCEEEeecc---cCCCCHHHH-HHHHHHHHHHcCCceEEEEccCchHHhhc
Q psy5743 553 ARAL--IKKSKILLLDEA---TSALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 553 ARAl--l~~p~IliLDEa---TSaLD~~~e-~~i~~~l~~~~~~~TvI~IaHrl~~i~~a 606 (644)
|+++ ..+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9999 999999999999 999999875 578888877 489999999999887655
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=202.56 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=121.5
Q ss_pred ccEEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHH--------hccCCCCCcEEEECCccCC
Q psy5743 398 GEIDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL--------LRLYDPQNGKILIDGVDIK 467 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL--------~g~~~p~~G~I~idg~~i~ 467 (644)
+.|++++...-+-+. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876555321 235799999999999999999999999999999999 66665554322
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
++.+ ..+|. .+| +.+ .-..++|+|++
T Consensus 702 ----------~~~~---d~i~~-------~ig--------------------~~d--------------~l~~~lStf~~ 727 (934)
T 3thx_A 702 ----------VSIV---DCILA-------RVG--------------------AGD--------------SQLKGVSTFMA 727 (934)
T ss_dssp ----------EECC---SEEEE-------ECC-------------------------------------------CHHHH
T ss_pred ----------chHH---HHHHH-------hcC--------------------chh--------------hHHHhHhhhHH
Confidence 1100 00111 011 000 01135788898
Q ss_pred HHHHHHHHH--ccCCCEEEeecccCCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 548 QRIAIARAL--IKKSKILLLDEATSALDAENEYLV-QSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 548 QRiaLARAl--l~~p~IliLDEaTSaLD~~~e~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++..+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...|+
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEec
Confidence 888899888 999999999999999999877666 44444443 3799999999999999999999999999998887
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
.+++
T Consensus 808 ~~~l 811 (934)
T 3thx_A 808 EETL 811 (934)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7765
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-21 Score=197.68 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=97.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
+++.+|+|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|++++++|+.++.++...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 367899999999999999999999999864 2 0 1 4566777999999999999999876421000
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCcccc------ccCCCCCCChhHHHHHHHH--HHHccCCCEEEeecccCCCCHHH
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTI------VGERGIMLSGGQKQRIAIA--RALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~------ige~G~~LSGGQkQRiaLA--RAll~~p~IliLDEaTSaLD~~~ 576 (644)
.+....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000011223445667888999998764 5567889999999999998 666 999999999999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-19 Score=184.74 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHH--hcceEEEecCCCCCc-ccHHHHHhcC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYL--RSQIGSVSQEPTLFS-GTIYENILYG 499 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~l--r~~i~~V~Q~~~Lf~-gTIreNI~~g 499 (644)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..| |..+++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999876542 334 457999999998776 4788898653
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENE 577 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e 577 (644)
. ..+.+..+.+.+...+.. ...++..++||.+||||+..+|+ ++.|| |+++.|.
T Consensus 181 ~----------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--- 236 (304)
T 1rj9_A 181 K----------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--- 236 (304)
T ss_dssp H----------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH---
T ss_pred H----------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH---
Confidence 1 112222222222222211 12246677999999999999999 55566 5555433
Q ss_pred HHHHHHHHHHc--CCceEEEEccCchHHhhc----------CEEEEEeCCe
Q psy5743 578 YLVQSAIEKLI--EGKTVLTIAHRLSTIRKS----------NQICVLDKGK 616 (644)
Q Consensus 578 ~~i~~~l~~~~--~~~TvI~IaHrl~~i~~a----------D~Iivl~~G~ 616 (644)
.+.+.++. .+.|+|+|||...+.+.. -.|..+..|+
T Consensus 237 ---~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 ---LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp ---HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred ---HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33332221 278999999986543222 3566666665
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-19 Score=175.31 Aligned_cols=147 Identities=22% Similarity=0.265 Sum_probs=105.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCC-------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-+++|++++|+||||||||||++.|+|.+.| ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888988652 11 2357788898888888999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-------cCCCEEEeeccc
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-------KKSKILLLDEAT 569 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-------~~p~IliLDEaT 569 (644)
.+..+. +..+ |++++..+++++ .+|+++++||||
T Consensus 95 ~~~~~~----~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 YVARAF----NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEEECC----SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEEecC----ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 887432 2111 222233333333 489999999999
Q ss_pred CCCCHH-------HH-----HHHHHHHHHHc--CCceEEEEcc----CchHHh-hcCEEEEEeCC
Q psy5743 570 SALDAE-------NE-----YLVQSAIEKLI--EGKTVLTIAH----RLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 570 SaLD~~-------~e-----~~i~~~l~~~~--~~~TvI~IaH----rl~~i~-~aD~Iivl~~G 615 (644)
+.+|++ .+ ..+.+.|.++. .++|+|+||| ....+. .||++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 22 25666665543 3799999999 444464 58999999975
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-20 Score=183.07 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=105.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----CCCCcEEEEC-------CccCC
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-----DPQNGKILID-------GVDIK 467 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-----~p~~G~I~id-------g~~i~ 467 (644)
|+++|++|+|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+... +..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 8898987652 22221
Q ss_pred ---CC--------ChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-c
Q psy5743 468 ---EL--------DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-I 534 (644)
Q Consensus 468 ---~~--------~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ 534 (644)
.+ ..+.|++.++++.|+...+++ ++..|+..+.. ..++++.+.++.. +... .
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~----~~~~~~~~~~~~~-----------~~~~~~ 142 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK----DLDQQMIEWAVDS-----------NIAVLV 142 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC----HHHHHHHHHHHHT-----------TCCEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc----hhHHHHHHHHHHc-----------CCCeEE
Confidence 11 113455556666665443333 33333332210 1123343333322 2222 2
Q ss_pred ccCCCCCCChhHHHH-HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 535 VGERGIMLSGGQKQR-IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 535 ige~G~~LSGGQkQR-iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
++..-..+|+||+|| +..||+++++|+++++||||||+|.++...+.+.|.+..+
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 355555789999999 8999999999999999999999999999999999877643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-21 Score=215.69 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=124.2
Q ss_pred cEEEEEEEEEcCCCCCCccccce----------eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCC
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDL----------SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIK 467 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~ 467 (644)
.++++|+++.|++. .+++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999642 23455544 366765 999999999999999999999988 7999999999963
Q ss_pred CC---ChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 468 EL---DPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 468 ~~---~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.. ....+|+.++|++|++.+++ .|++|||.++. ...+. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~---------------~~~~~-----------------~~~~~s 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ---------------NAIAG-----------------EGMGIS 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH---------------HHHHC-----------------SSSCCC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH---------------HHhcC-----------------Cccccc
Confidence 22 24578999999999998876 58999986531 11110 011112
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecc------cCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchH--------Hhh-
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEA------TSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLST--------IRK- 605 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEa------TSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~--------i~~- 605 (644)
++++.++.+...+|+++++||| |++||+..++.+.+.+.++.+ +.++++++|.++. ++.
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 2444555555668999999999 999999999999999988542 4678899999763 222
Q ss_pred ----cCEEEEEeCCeEEEecChhHHh
Q psy5743 606 ----SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 606 ----aD~Iivl~~G~ive~Gt~~eLl 627 (644)
...|.|+.++..++.|+.++++
T Consensus 211 ~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 211 DPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred hhcCCceEEEecchhhcCcccHHHHH
Confidence 3568999999999989876554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-19 Score=185.56 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=109.8
Q ss_pred EEEEEEcCCCCCCccccceeE-------EEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHH
Q psy5743 403 NNIRFSYPSRPDAVILNDLSL-------KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl-------~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~l 474 (644)
.+++++|.. ...+.|+++.+ .+++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++.- . +
T Consensus 92 ~~~~iR~~~-~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIP-SKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-V---H 166 (356)
T ss_dssp EEEEEEEEC-CSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-C---C
T ss_pred cEEEEEECC-CCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-h---h
Confidence 578888865 35677888887 78899999999999999999999999999997 6777665544432 1 2
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+...++++|.+.-.. . .+-.+ +|||
T Consensus 167 ~~~~~~v~q~~~~~~------------~---~~~~~----------------------------------------~La~ 191 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------T---LGFSE----------------------------------------ALRS 191 (356)
T ss_dssp CCSSSEEEEEEBTTT------------B---SCHHH----------------------------------------HHHH
T ss_pred hccccceeeeeeccc------------c---CCHHH----------------------------------------HHHH
Confidence 233455555432110 0 11111 9999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
||..+|+++++|||| |.++...+.++ ...++|+++++|..+.+..+||+++|..|
T Consensus 192 aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 192 ALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999999 77776655554 23489999999999999999999988543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=157.83 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=72.0
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE--E
Q psy5743 539 GIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV--L 612 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iiv--l 612 (644)
...||||||||++||||+. ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+..++..||+|+. +
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 678999999999999999999999999998888999999999999999999985 4
Q ss_pred eCCeE
Q psy5743 613 DKGKI 617 (644)
Q Consensus 613 ~~G~i 617 (644)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-19 Score=191.45 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++++|++ ..+++|+||+| +|+|+||||||||++.|+|...|..| .+|.++.... ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 35899999999963 46999999998 99999999999999999999987666 2444433211 112457
Q ss_pred eEEEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+++++|++.++ .-||.||+.++.. .+.++.++.+ .+++.+ .++++.+||++||||+
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~----~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal 133 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA----VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQ 133 (418)
T ss_dssp EECC------CEEEEEEECC---------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh----ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 99999998877 6799999998853 2222222221 112221 2334567899999999
Q ss_pred ccCCC---EEEeeccc-CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 557 IKKSK---ILLLDEAT-SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 557 l~~p~---IliLDEaT-SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
+++|+ ++++|||| ++||+... .+++ ++..+.++|+|.|..+++
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999 99999999 58998764 3333 344578899999987764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-20 Score=182.71 Aligned_cols=118 Identities=17% Similarity=0.116 Sum_probs=92.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~ 503 (644)
.++|++++|+||||||||||+++|.|+++|+ | ..+++|+||++.++.+.++|+.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~- 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKG- 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTT-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCC-
Confidence 4789999999999999999999999999886 5 2688999999999988888874211 00
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcC--ccccccCCCCCCChhHHHHHHHH-HHHccCCCEEEeeccc
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNG--FDTIVGERGIMLSGGQKQRIAIA-RALIKKSKILLLDEAT 569 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~G--l~T~ige~G~~LSGGQkQRiaLA-RAll~~p~IliLDEaT 569 (644)
. ..+.....+.+++..++.| ++++++++|..+||||+||+++| |+++.++.++++|||.
T Consensus 79 --~-----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 --A-----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp --S-----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred --C-----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 0111222333445556655 78899999999999999999999 9999999999999984
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-19 Score=182.72 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=80.9
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
+|++.+|.+ +.++++++|+| +|+|+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888853 46899999998 99999999999999999998 889999 9999987754 11 1 4578999
Q ss_pred ecCCCCC-cccHHHHHhcCCCCCCCCCH-HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 482 SQEPTLF-SGTIYENILYGVNDSSSVTK-SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 482 ~Q~~~Lf-~gTIreNI~~g~~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
+|++.++ .-|+.||..++.. .+. ++.....+. +.. -.+..+ .++|||||||+.+|||+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~----~~~~e~~~~l~~~------l~~---~~~~~~----~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA----INCRDCFKTIISY------IDE---QFERYL----HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EC---CCEEEEEEEEC---------------CTTHHHH------HHH---HHHHHH----HHHTSSCCTTCCCCCCCE--
T ss_pred ecCCCcccCcchhhhhhhhhh----cCcHHHHHHHHHH------HHH---HHHHHH----HHhCHHhhhhhhhhhhhh--
Confidence 9987654 5689999888743 111 111111111 111 111222 358999999999999985
Q ss_pred CCEEEeecccCC-CCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 560 SKILLLDEATSA-LDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 560 p~IliLDEaTSa-LD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
++++||||++ ||+... .+.+.+.+ ..+.++|+..|++.+
T Consensus 130 --ll~ldePt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp --EEEEECSSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred --eeeeecCcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 9999999986 999874 22222321 125688888898753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-17 Score=159.13 Aligned_cols=164 Identities=9% Similarity=0.058 Sum_probs=112.6
Q ss_pred CccccceeE-EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc---ceEEEecCCCCCcc
Q psy5743 415 AVILNDLSL-KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG 490 (644)
Q Consensus 415 ~~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~g 490 (644)
-+.|+++.. .+++|+.++|+||+|||||||++.+++...+.+|.|.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 456888887 8999999999999999999999999999988888888766543 2333322 2233222211
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeec
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDE 567 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDE 567 (644)
.+++.+-+ .....+. -.+- ...|.+|.++...+.+...+|+ ++++||
T Consensus 82 --~~~~~~~~-------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 82 --EKKLIIID-------------------------ALMKEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp --TTTEEEEE-------------------------CCC----CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred --hCCEEEEe-------------------------ccccccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 00111110 0000000 0011 1348999998888887778999 999999
Q ss_pred ccCCC--CHHHHHHHHHHHHHHc--CCceEEEEccCc--------hHH-hhcCEEEEEeCC
Q psy5743 568 ATSAL--DAENEYLVQSAIEKLI--EGKTVLTIAHRL--------STI-RKSNQICVLDKG 615 (644)
Q Consensus 568 aTSaL--D~~~e~~i~~~l~~~~--~~~TvI~IaHrl--------~~i-~~aD~Iivl~~G 615 (644)
||+.+ |+.....+.+.|.++. .+.|+|+++|.. ..+ ..||+|++|++.
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99888 9888888888887764 378999999998 334 569999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-18 Score=166.29 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=104.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH-----HHH
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI-----YEN 495 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI-----reN 495 (644)
-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|...+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999999977653 24568999999988876533 244
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
+.+... -|.| .+++ ++.++..++++||| ||+.
T Consensus 87 ~~~~~~----------------------------~yg~------------~~~~---v~~~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 87 AEVFGN----------------------------YYGT------------SREA---IEQVLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEETTE----------------------------EEEE------------EHHH---HHHHHTTTCEEEEE-----CCHH
T ss_pred HHHHhc----------------------------cCCC------------CHHH---HHHHHhcCCeEEEE-----ECHH
Confidence 433210 0111 0121 34555667999999 9999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+...+.+.+. +++|+++++|+++.+.. |+ ++.| .|+.+++.+
T Consensus 119 ~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 119 GAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9999998765 57899999999998876 43 6667 567777753
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-18 Score=166.35 Aligned_cols=161 Identities=16% Similarity=0.023 Sum_probs=102.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
.+++|+.++|+||||||||||+++|+|. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 788999999987643221 1345788888765 5678899986531
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhh--cCcccc--ccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFK--NGFDTI--VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp--~Gl~T~--ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
+. ....+....++... .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.
T Consensus 77 ------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 77 ------GR---YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp ------HH---HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred ------HH---HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 00 01111111111110 011111 12334579999999999999999999876 57776666
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEE
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I 609 (644)
+.+.+.++....++++.|+..+.-..+|+|
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 666665443222344555543333334444
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-18 Score=181.45 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=112.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC--------CCCCcEEEECCccCCCCC---------------hHHHhcceEEE---
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY--------DPQNGKILIDGVDIKELD---------------PMYLRSQIGSV--- 481 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~--------~p~~G~I~idg~~i~~~~---------------~~~lr~~i~~V--- 481 (644)
=+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 889999999999998764 45678889988
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHH-------HHHhhccchh--hhhcCccccccCCCCCCChhHHHHHH
Q psy5743 482 SQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAA-------KEANAYGFVI--DFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 482 ~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~-------~~a~l~~~i~--~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+|++. .|+.++.||..++.|. .+.+.. +...+.+.+. ++.+..+... ++||||+||..
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-----~ls~g~~Q~~~ 151 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-----QFTIAQSQVGY 151 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-----HCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-----hchHHHHHHHh
Confidence 68876 4789999999988542 222111 1112221111 1111112221 58999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
.+|+++.+|+++ ||| +.+.+.|+++.++.|+++++|+..
T Consensus 152 ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 152 ADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999999887 888 677778877778899999999743
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-17 Score=176.34 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=116.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+++++ +++|++ .+ |+++||++++|+. +||+||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466677 788863 34 9999999999999 9999999999999999999994 4566666555555677
Q ss_pred ceEEEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccchhh-------hhcCcccc-------ccC
Q psy5743 477 QIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHA----AKEANAYGFVID-------FKNGFDTI-------VGE 537 (644)
Q Consensus 477 ~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~i~~-------lp~Gl~T~-------ige 537 (644)
.++|++|++.++ .-|+.||+.+|.. .+.+.-++. ++. .+.+++.. ++..-|+. |-+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~----~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d 157 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ----INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAP 157 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-----CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECC
T ss_pred eEEEEeecCccccccchhhhhhhhhc----cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeC
Confidence 899999999887 5699999999854 343322211 111 11111111 12222322 245
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH-Hc-CCceEEEEccC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK-LI-EGKTVLTIAHR 599 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~-~~-~~~TvI~IaHr 599 (644)
.+..|+-.+ +.++|+|..+++|+++|++|..|.++.-..+.+.|.+ +. .+..++.|+..
T Consensus 158 ~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 158 TGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 566788776 8999999999999999999999988766677777775 43 46778888753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=184.94 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=104.1
Q ss_pred ccEEEEEEEEEcC----CCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 398 GEIDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 398 ~~I~~~~vsf~Y~----~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
+.|++++..--.- +..++.|++|+||++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777643220 112468999999999999999999999999999999987532110
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
..-.+||++..-+ ++.++| ..++ |..-.+..+-..+|+|++|+..++
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i---------------------------~~~i--g~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGI---------------------------FTRM--GAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEE---------------------------EEEC------------CCHHHHHHHHHHHH
T ss_pred --hcCccccchhhhh--hHHHHH---------------------------HHhC--ChHHHHHHhHHHhhHHHHHHHHHH
Confidence 0011222221100 000000 0000 111112223357899999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHH-HHHHHHc--CCceEEEEccCchHHhhcCEE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQ-SAIEKLI--EGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~-~~l~~~~--~~~TvI~IaHrl~~i~~aD~I 609 (644)
|+ ..+|+++||||||+++|+.....+. ..++.+. .++|+|++||.++....||+.
T Consensus 748 ~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 748 RK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred Hh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99 8899999999999999999777776 4445442 489999999999888766653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=158.44 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=102.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh-cCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL-YGVND 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~-~g~~~ 502 (644)
.+++|+.++|+||+|||||||++.+++... .|++. .|.+... +..+.|++.+... ..+.+++. ++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAH- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTT-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhh-
Confidence 378999999999999999999999999764 47663 3544321 2367888776543 33433332 2321
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC--CCCHHHH---
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS--ALDAENE--- 577 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS--aLD~~~e--- 577 (644)
.+.++..++++...+. ...+.....||+||+|++ |+++++|+++|+||||+ ++|..+.
T Consensus 94 ---~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~ 156 (279)
T 1nlf_A 94 ---LSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPM 156 (279)
T ss_dssp ---SCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHH
T ss_pred ---cChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHH
Confidence 3444444444443332 223445678999998875 78899999999999999 9997544
Q ss_pred HHHHHHHHHHc--CCceEEEEccCchHH
Q psy5743 578 YLVQSAIEKLI--EGKTVLTIAHRLSTI 603 (644)
Q Consensus 578 ~~i~~~l~~~~--~~~TvI~IaHrl~~i 603 (644)
..+.+.|.++. .++|+|+|+|.....
T Consensus 157 ~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 157 AQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 67777777764 389999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=152.73 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=98.3
Q ss_pred ccccceeE-EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 416 VILNDLSL-KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
+.|+++.. .+++|+.++|+||+|||||||++.+++ .+..+.++++..+ ..+...+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 45677665 699999999999999999999999999 4444455554422 1122222 22
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh--HHHHHHHHHHHccC-CCEEEeecccCC
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG--QKQRIAIARALIKK-SKILLLDEATSA 571 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG--QkQRiaLARAll~~-p~IliLDEaTSa 571 (644)
...... .+.+++. ..+ .+. .+|++ |+|+++.+|++.++ |+++|+||||+.
T Consensus 65 ~~~~~~-----~~~~~~~------------~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAETRG-----LNPEEAL------------SRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHTTT-----CCHHHHH------------HHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHhcC-----CChHHHh------------hcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 111000 1222210 111 011 12333 47899999999986 999999999999
Q ss_pred CCHHHH--------HHHHHHHHHHcC--CceEEEEccCch-------------H-HhhcCEEEEEeCC
Q psy5743 572 LDAENE--------YLVQSAIEKLIE--GKTVLTIAHRLS-------------T-IRKSNQICVLDKG 615 (644)
Q Consensus 572 LD~~~e--------~~i~~~l~~~~~--~~TvI~IaHrl~-------------~-i~~aD~Iivl~~G 615 (644)
+|...+ ..+.+.|+++.+ +.|+|+++|... . -..||.|++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 997532 334455665543 789999999865 2 3569999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-16 Score=181.47 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=108.2
Q ss_pred ccEEEEEEEEEcCCC----CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCChH
Q psy5743 398 GEIDFNNIRFSYPSR----PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~ 472 (644)
+.|++++.. +|-- .++.+++|+||+ ++|++++|+||||||||||+|++.|+..+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 357777763 2310 245789999999 99999999999999999999999997532 222 11111
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
-+..++++.| +|.. ++.||+..+ -..+|+|+++ ++
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~---------------------------------------~stf~~e~~~-~~ 678 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG---------------------------------------RSTFMVEMTE-TA 678 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------------------------------------------------CHHHHHH-HH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh---------------------------------------hhhhhHHHHH-HH
Confidence 1235666655 3432 344443221 1235666654 44
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLV-QSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
.+.....+|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++..
T Consensus 679 ~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 679 NILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 44456899999999999888888644443 44555543 3789999999999988899887777776653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-15 Score=149.18 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=93.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--cCCC-----CCcEEEECCccCC-CCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDP-----QNGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p-----~~G~I~idg~~i~-~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
-+++|+.++|+||+|||||||++.+++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 6789999987631 11123345556666553 5666
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALD 573 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD 573 (644)
+.+..+ .+.++..+.++ -+++++ .+|+++++||+|+.+|
T Consensus 93 ~~~~~~----~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 93 VAYARA----FNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp EEEEEC----CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC
T ss_pred eEEEec----CCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHH
Confidence 665432 23333322211 111222 6899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCceEEEEccCchHHh--------------------hcCEEEEEeCC
Q psy5743 574 AE-------NE-----YLVQSAIEKLI--EGKTVLTIAHRLSTIR--------------------KSNQICVLDKG 615 (644)
Q Consensus 574 ~~-------~e-----~~i~~~l~~~~--~~~TvI~IaHrl~~i~--------------------~aD~Iivl~~G 615 (644)
.+ ++ ..+...|.++. .++|+|+++|-..... .||.|++|+.|
T Consensus 134 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 134 TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 86 43 23444444433 2799999999655432 68999999875
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-17 Score=172.45 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=119.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 475 (644)
|+++|+++.|. ...+|+++|+++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556667774 2468999999999999999999999999999999999999999999999998865432 2457
Q ss_pred cceEEEecCCCCCc----------cc---HHHHHhc---CCCC-------CCCCCHHHHHHHHH-------------HHh
Q psy5743 476 SQIGSVSQEPTLFS----------GT---IYENILY---GVND-------SSSVTKSDIIHAAK-------------EAN 519 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~----------gT---IreNI~~---g~~~-------~~~~~~~~i~~a~~-------------~a~ 519 (644)
+++++++|++.+|. || ++|.+.. +..+ .-..++..+.+.++ ...
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 78999999999985 22 3333210 0000 00001111110000 000
Q ss_pred hccchhhhhcCcc-ccccC--CCCCCChhHHHHHHHHHHHcc------CCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 520 AYGFVIDFKNGFD-TIVGE--RGIMLSGGQKQRIAIARALIK------KSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 520 l~~~i~~lp~Gl~-T~ige--~G~~LSGGQkQRiaLARAll~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+...|.-+- +.+ + ....+|+|++|++..|++++. +|+++. |||+|.++-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~-Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKA-DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECC-STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEch-hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1111112221100 001 1 113479999999999999997 688887 99999999989988887754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-15 Score=161.86 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=105.5
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHH--HhcceEEEecCCCCC-ccc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMY--LRSQIGSVSQEPTLF-SGT 491 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~--lr~~i~~V~Q~~~Lf-~gT 491 (644)
+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... ... .|+.++||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999988775432 123 377899999998765 568
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC-C-CEEEeeccc
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK-S-KILLLDEAT 569 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~-p-~IliLDEaT 569 (644)
+++||.++... +.+-.+.+.+...++ -.++-.--+||+.++|++..+ | .+++..+||
T Consensus 364 V~e~l~~a~~~----------------~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 364 IFDAIQAAKAR----------------NIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHT----------------TCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHhc----------------CCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 99999876311 111111111111111 011212235889999988654 5 466666688
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++.|.... .+.+.+. -+.|.|++||
T Consensus 423 tGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 88655432 2223222 2789999999
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=149.26 Aligned_cols=74 Identities=27% Similarity=0.322 Sum_probs=68.4
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQRI------AIARALIKK-SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQRi------aLARAll~~-p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..|||||+||+ ++|||+..+ |++|||||||++||+++...+.+.|.++.+++++|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998876667999999999977889999999
Q ss_pred e
Q psy5743 613 D 613 (644)
Q Consensus 613 ~ 613 (644)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-17 Score=157.60 Aligned_cols=169 Identities=15% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSV 506 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~ 506 (644)
|+.++|+||||||||||++.|++ |.+|.++++|.++... ...++++|....+ ..|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999998 6789999999765432 2457777765332 357777775320
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC--ChhHHHHHHHHH------HHccCCCEEEeecccCCCCHHHHH
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML--SGGQKQRIAIAR------ALIKKSKILLLDEATSALDAENEY 578 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L--SGGQkQRiaLAR------All~~p~IliLDEaTSaLD~~~e~ 578 (644)
.... ..+. +.+.+...+-. .. +.-..+ |+|++|++.++. +++++|+...+|+ ++|++..+
T Consensus 67 -----~~~~-~~~~-~~ild~~~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 67 -----VNFL-LAQN-DVVLDYIAFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp -----HHHH-HTTC-EEEEESCCCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred -----HHHH-hcCC-cEEEeeccCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 0010 1110 11111000000 00 000124 889888988888 8888888888884 78988766
Q ss_pred HHHHHHHHHcC-CceEEEEccC-chHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 579 LVQSAIEKLIE-GKTVLTIAHR-LSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 579 ~i~~~l~~~~~-~~TvI~IaHr-l~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
. .+.+.+... +.|+|..+|. ++.+. .||+|+ ++|+++..|+.+-|
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 6 677766643 5789999999 88875 599999 99999999987655
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-17 Score=172.47 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHHHhcceEEEe---------c
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMYLRSQIGSVS---------Q 483 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr~~i~~V~---------Q 483 (644)
+|+++ + .++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999999888421 1223445566644 8
Q ss_pred CCCCC--c-----ccHHHHHhcCCCCC------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 484 EPTLF--S-----GTIYENILYGVNDS------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 484 ~~~Lf--~-----gTIreNI~~g~~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|.++ . .|+++|+.++.... ...+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88763 2 38888887642100 001223344445554443221 235799999999
Q ss_pred HHHHHHccCCCEEE
Q psy5743 551 AIARALIKKSKILL 564 (644)
Q Consensus 551 aLARAll~~p~Ili 564 (644)
||||++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999976
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-16 Score=174.48 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=121.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc--ccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS--GTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gTI 492 (644)
+.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.+.. +++++++.|... .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 457899999999999999999999999999999999999999999999976322221 456788888766 33 377
Q ss_pred HHHHhcC---CCCC---CCCCHHHHHHHHHHHhh-c------------cchhh---hhcCcccccc-------CCCCCCC
Q psy5743 493 YENILYG---VNDS---SSVTKSDIIHAAKEANA-Y------------GFVID---FKNGFDTIVG-------ERGIMLS 543 (644)
Q Consensus 493 reNI~~g---~~~~---~~~~~~~i~~a~~~a~l-~------------~~i~~---lp~Gl~T~ig-------e~G~~LS 543 (644)
++++... +||. .+..++|...+++.++- | +.+.+ .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776432 2210 12556667666666541 1 11222 2334433222 1234579
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEE--EccCchHHhh-cC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLT--IAHRLSTIRK-SN 607 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~--IaHrl~~i~~-aD 607 (644)
||||||.++|.+ | |++||+++.+.+.+.|.++.+ ++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999999877521 7 999999877766666655543 678875 8999998753 43
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-14 Score=146.62 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=81.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 508 (644)
.+.|+||+|+||||+++.++| ++.|..|+|.++|.++..... -+..+++++|.+++.-.. .+....+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP---------SDMGNNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC---------C----CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH---------hhcCCcch
Confidence 399999999999999999999 899999999999988764332 367899999988753210 00000122
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+.++...-. .+++..+ .||| +..+|+++|+|||++ ||.++...+.+.+++..
T Consensus 107 ~~~~~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 107 IVIQELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 2343433332210 1122111 5676 788999999999999 99999999999998877
Q ss_pred CCceEEEEccCchH
Q psy5743 589 EGKTVLTIAHRLST 602 (644)
Q Consensus 589 ~~~TvI~IaHrl~~ 602 (644)
++.++|++||+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 78899999999764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-14 Score=148.75 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=109.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH----HHhcc--eEEEecCCCCCc-ccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM----YLRSQ--IGSVSQEPTLFS-GTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~----~lr~~--i~~V~Q~~~Lf~-gTIreNI 496 (644)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .|+++ +.+++|+..++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999877643 34454 449999988875 5899999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~ 576 (644)
.++.. .+. +.+. +||. |-... -..=-.+.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~----------------~~~-d~vl-----iDta-G~~~~-~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~ 259 (328)
T 3e70_C 205 QHAKA----------------RGI-DVVL-----IDTA-GRSET-NRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE 259 (328)
T ss_dssp HHHHH----------------HTC-SEEE-----EEEC-CSCCT-TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH
T ss_pred HHHHh----------------ccc-hhhH-----Hhhc-cchhH-HHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH
Confidence 76521 111 1110 2221 11000 00011233348999999999999996665 33322
Q ss_pred HHHHHHHHHHHcCCceEEEEccCchH---------H-hhcCEEEEEeCCeEE
Q psy5743 577 EYLVQSAIEKLIEGKTVLTIAHRLST---------I-RKSNQICVLDKGKIV 618 (644)
Q Consensus 577 e~~i~~~l~~~~~~~TvI~IaHrl~~---------i-~~aD~Iivl~~G~iv 618 (644)
. .+.+.+. .+.|.|++||--.+ + ...-.|..+..|+-+
T Consensus 260 ~---~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 Q---ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H---HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H---HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 1222221 37899999994432 1 223578888888765
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-15 Score=138.95 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
+|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45667774 346899999999999999999999999999999999999 9999999999988531 1112 2799
Q ss_pred cCCCCCcccHHHHHhc
Q psy5743 483 QEPTLFSGTIYENILY 498 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~ 498 (644)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999953
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=147.35 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=97.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHhccCCCCCc-----EEEECCccC-CCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAM--LLLRLYDPQNG-----KILIDGVDI-KELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~--lL~g~~~p~~G-----~I~idg~~i-~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
-|++|++++|+||||||||||++ ++.+..+|+.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 44577776544 899999763 22223334556666555 67788
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALD 573 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD 573 (644)
+.+..+ .+.++.. +.+.-+++++ .+|+++++||+|+.+|
T Consensus 247 i~~~~~----~~~~~~~-----------------------------------~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 247 VAYARA----YNADHQL-----------------------------------RLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp EEEEEC----CSHHHHH-----------------------------------HHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred EEEecc----CChHHHH-----------------------------------HHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 877643 2222222 2222222222 4799999999999999
Q ss_pred HHHH------------HHHHHHHHHHc--CCceEEEEccCch-------------------H-HhhcCEEEEEeCCe
Q psy5743 574 AENE------------YLVQSAIEKLI--EGKTVLTIAHRLS-------------------T-IRKSNQICVLDKGK 616 (644)
Q Consensus 574 ~~~e------------~~i~~~l~~~~--~~~TvI~IaHrl~-------------------~-i~~aD~Iivl~~G~ 616 (644)
.+.. ..+.+.|.++. .+.|+|+|+|-.+ . -..+|.+++|+.|+
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 7633 45666666654 2789999999832 1 23479999998764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-15 Score=151.30 Aligned_cols=171 Identities=14% Similarity=0.150 Sum_probs=107.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCC--
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGV-- 500 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~-- 500 (644)
++++++|+||+|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556777788877655 58899986410
Q ss_pred ---C----CCCCCCHHHHHHHHHHHhhccchhh--hh-cC-ccccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEee--
Q psy5743 501 ---N----DSSSVTKSDIIHAAKEANAYGFVID--FK-NG-FDTIVGERGIMLSGGQKQRIAIARAL-IKKSKILLLD-- 566 (644)
Q Consensus 501 ---~----~~~~~~~~~i~~a~~~a~l~~~i~~--lp-~G-l~T~ige~G~~LSGGQkQRiaLARAl-l~~p~IliLD-- 566 (644)
. +..+.+.++.....+.... +.+.- .| .- ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~-~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEV-DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCC-CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCC-CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 0001122222111110010 00000 00 00 11111233456888 66 899 9999999999
Q ss_pred --cccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 567 --EATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 567 --EaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
|||+++|..++..+.+.+.+..+... .-.......+++++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~~-----~v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVAK-----PVIELYKSRGVLHQFSG 218 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhHH-----HHHHHHhhcCcEEEECC
Confidence 99999999999999988877643210 00122334566777764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=144.89 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=82.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEEC-CccCCCCChHHHhcceEEEecCCCCCcc-cH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILID-GVDIKELDPMYLRSQIGSVSQEPTLFSG-TI 492 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~id-g~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TI 492 (644)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+.. ...++.+++++|++++++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 347788775 4899999999999999999999999999 999999987 76542 2345689999999998865 89
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+++-..+ .+.+++.+ .+.++++.+ |+.-.-...-.+|| ||+||++||++++
T Consensus 279 ~e~~l~~------l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLWH------LEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCCC------CCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhcC------CCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 9863321 44555432 222333322 44444445567899 9999999999863
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=123.40 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=69.7
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 57 666666432210
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+++.+|++|+||||++ +|.
T Consensus 79 ------------------------------------------------------------~~~~~~~lLilDE~~~-~~~ 97 (149)
T 2kjq_A 79 ------------------------------------------------------------DAAFEAEYLAVDQVEK-LGN 97 (149)
T ss_dssp ------------------------------------------------------------GGGGGCSEEEEESTTC-CCS
T ss_pred ------------------------------------------------------------HHHhCCCEEEEeCccc-cCh
Confidence 3467899999999998 665
Q ss_pred HHHHHHHHHHHHHcC-Cce-EEEEccC
Q psy5743 575 ENEYLVQSAIEKLIE-GKT-VLTIAHR 599 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~-~~T-vI~IaHr 599 (644)
..++.+.+.+.++.. ++| +|++||+
T Consensus 98 ~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 98 EEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 557788888876543 577 6777775
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=123.78 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=75.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN 501 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~ 501 (644)
|+++++|+.++|+||+|+|||||++.+++.+.|.+|... .++ +..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~~------- 77 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTKD------- 77 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHHH-------
Confidence 567789999999999999999999999999987766311 010 1111
Q ss_pred CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHHH
Q psy5743 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYLV 580 (644)
Q Consensus 502 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~i 580 (644)
+.+.+... +..+. . + -+...+.+|++|+||||++ ++|+.....+
T Consensus 78 ---------~~~~~~~~--------~~~~~--------~-------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l 122 (180)
T 3ec2_A 78 ---------LIFRLKHL--------MDEGK--------D-------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELI 122 (180)
T ss_dssp ---------HHHHHHHH--------HHHTC--------C-------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHH
T ss_pred ---------HHHHHHHH--------hcCch--------H-------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHH
Confidence 11111100 00000 0 0 1122345999999999996 8999998888
Q ss_pred HHHHHHHc-CCceEEEEccCch
Q psy5743 581 QSAIEKLI-EGKTVLTIAHRLS 601 (644)
Q Consensus 581 ~~~l~~~~-~~~TvI~IaHrl~ 601 (644)
.+.+.+.. +++++|++||...
T Consensus 123 ~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 123 SYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHHcCCCEEEEcCCCh
Confidence 88887765 6899999999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-15 Score=149.38 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=82.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-ccC------------CCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLY------------DPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~------------~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4578999999999999999999999999999999 999 6666665 5655555555544432 22
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh-hcCccccccCCCCCCChhHHHHH-HHHH-HHccC
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF-KNGFDTIVGERGIMLSGGQKQRI-AIAR-ALIKK 559 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l-p~Gl~T~ige~G~~LSGGQkQRi-aLAR-All~~ 559 (644)
++..++.+++.+|+ ++.+ .+++.++++... ..+..+ +.|.. .-+++. .-++ .++..
T Consensus 90 ~~~~~~~~~~~~~~-~~~~------~~~i~~~~~~~~--~vild~~~~g~~------------~~~~~~~~~~~~v~v~~ 148 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVP------RKNLEDNVDKGV--STLLVIDWQGAF------------KFMEMMREHVVSIFIMP 148 (231)
T ss_dssp TTCEEEEEEETTEE-EEEE------CTTHHHHHHHTC--EEEEECCHHHHH------------HHHHHSGGGEEEEEEEC
T ss_pred cCceehhhhhcccc-CCCC------HHHHHHHHHcCC--eEEEEcCHHHHH------------HHHHhcCCCeEEEEEEC
Confidence 44444444555554 4432 223333333221 111111 11111 113443 2223 33567
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcC------CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~------~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|+..++||.+++.|..++..+.+.|.+..+ ..+.|++.|.++. .+..++++...+++....++.++
T Consensus 149 ~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 149 PSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp SCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred CcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhh
Confidence 788889999999999888888777654332 2355555665543 24444444444444433333333
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-14 Score=148.27 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=75.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhccCC--CCC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKI-------------------QSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN 456 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i-------------------~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~ 456 (644)
+.|+++||++.|. ++++++|+++ ++|+++||+|+||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4699999999993 5899999988 8999999999999999999999999998 999
Q ss_pred cEEEE---CCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhc
Q psy5743 457 GKILI---DGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILY 498 (644)
Q Consensus 457 G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~ 498 (644)
|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999 998742 2456778999 765543 3467777654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-14 Score=139.84 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=107.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC---CCCCcEEEE--------CCccCCC-CChHHHhcceEEEecCC------CCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY---DPQNGKILI--------DGVDIKE-LDPMYLRSQIGSVSQEP------TLF 488 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i--------dg~~i~~-~~~~~lr~~i~~V~Q~~------~Lf 488 (644)
.+.+++|+|++||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 7887763 55678899999999986 556
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i-ge~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
..++.+++ .++++.+++..++.++++...+.+.++.+ .++|.-++|+ .++++++++++++|+.+
T Consensus 84 ~~~v~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~ 148 (227)
T 1cke_A 84 GEDVSGEI----------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLD 148 (227)
T ss_dssp TEECHHHH----------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEE
T ss_pred CeeCchhh----------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEe
Confidence 77788876 25788999999999999998887877766 3577888887 57778899999999988
Q ss_pred ccC
Q psy5743 568 ATS 570 (644)
Q Consensus 568 aTS 570 (644)
++.
T Consensus 149 ~~~ 151 (227)
T 1cke_A 149 ASS 151 (227)
T ss_dssp CCH
T ss_pred CCH
Confidence 754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-15 Score=149.19 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=104.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC-CCCc-ccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP-TLFS-GTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-~Lf~-gTI 492 (644)
+.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45789999999999 999999999999999999999987 89999999998777777788899999985 3332 356
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC--
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS-- 570 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS-- 570 (644)
.|||....+. ....+. ....+....+ -..|||||+||..+|+|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~---r~~~~~------~~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~ 166 (274)
T 2x8a_A 109 FDEVDALCPR---RSDRET------GASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRP 166 (274)
T ss_dssp EETCTTTCC------------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred eehhhhhhcc---cCCCcc------hHHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence 6777654321 011100 0011111121 2358999999999999999999985 99975
Q ss_pred ----------CCCHHHHHHHHHHH
Q psy5743 571 ----------ALDAENEYLVQSAI 584 (644)
Q Consensus 571 ----------aLD~~~e~~i~~~l 584 (644)
--|.+....|.+.+
T Consensus 167 gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 167 GRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666777776654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-13 Score=140.76 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=81.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCCC------cccHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTLF------SGTIYE 494 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf------~gTIre 494 (644)
++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++........++.+|+|+|+|.+. .-|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 999887654221123699999999653 4578 8
Q ss_pred HH--hcCC--------CC--CCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 495 NI--LYGV--------ND--SSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 495 NI--~~g~--------~~--~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+ .|+. .+ ......+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 98 5531 00 01123467888888888764 333333 358998888899987
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=139.07 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=95.9
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
-++++|++++|+.|+|||++|||||||++.|+|..+ .+.+.+...+. ..+++|.|++. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 45565555443 36777877651 1223333332
Q ss_pred cCCC--CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 498 YGVN--DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 498 ~g~~--~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
+... ........ ..+..+ ..+..+.-+.-. + +.-.+||+||+||.++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~e--ra~~lL~vvDls-~----~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIA--RTRVLLYVLDAA-D----EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHT--SSSEEEEEEETT-S----CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHH--HHHhhhEEeCCc-c----CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 00001111 111111 111112111111 1 22246999999999999999999999999 889987
Q ss_pred HHHHHHHHHHHHc--CCceEEEEcc
Q psy5743 576 NEYLVQSAIEKLI--EGKTVLTIAH 598 (644)
Q Consensus 576 ~e~~i~~~l~~~~--~~~TvI~IaH 598 (644)
++ ...+.+.+.. .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 3334443332 2567777763
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-12 Score=132.89 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCC------------
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTL------------ 487 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~L------------ 487 (644)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 99998765532222469999999853
Q ss_pred ----Cc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc-cchhhhhc
Q psy5743 488 ----FS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY-GFVIDFKN 529 (644)
Q Consensus 488 ----f~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~-~~i~~lp~ 529 (644)
|. -|+ +|+.|+.-......++++.++++..++. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 43 377 9998853111123456789999999995 55555553
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=126.54 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=100.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.++++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.+.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 1 678888 99999999999999999999999999999999999987765311100
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
++....+..++. -+|.| ..-...+-||.+|+++...+
T Consensus 144 ------------------------------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~ 180 (295)
T 1ls1_A 144 ------------------------------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEA 180 (295)
T ss_dssp ------------------------------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHT
T ss_pred ------------------------------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCC
Confidence 000111222221 11111 11234456899999998899
Q ss_pred CCEEEeecc-cCCCCHHHHHHHHHHHHHHcCCceEEEEc
Q psy5743 560 SKILLLDEA-TSALDAENEYLVQSAIEKLIEGKTVLTIA 597 (644)
Q Consensus 560 p~IliLDEa-TSaLD~~~e~~i~~~l~~~~~~~TvI~Ia 597 (644)
++++|+||| ++++|...-..+.+..+...++.+++++.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999999 99999987777777766666666665553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=119.92 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=56.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHH
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI 496 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI 496 (644)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57789999999999999999999999999974 688899888777666667889999999987765 344444
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-12 Score=130.32 Aligned_cols=104 Identities=22% Similarity=0.165 Sum_probs=86.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEE--------ECCccC-CCCChHHHhcceEEEecC------CCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKIL--------IDGVDI-KELDPMYLRSQIGSVSQE------PTL 487 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~--------idg~~i-~~~~~~~lr~~i~~V~Q~------~~L 487 (644)
++|++++|+|||||||||++++|. |++.|++|.|+ .+|.++ .......+++.+++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 999999 456788999999999954 567
Q ss_pred CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 488 FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 488 f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
++.++.+||. .+++..++..+..++.+.+....+...++++|
T Consensus 105 ~~~~v~~~i~----------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 105 EGEDVSNEIR----------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp TTEECTTGGG----------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred CCeehhHHHH----------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 7788888874 35677777788888888777666666666544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=121.38 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=73.1
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
++++.++|++++|+|++||||||+++.|++.+.+..|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3555678999999999999999999999999999989999887664210 011
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH---HHHHHHccCCCEEEeecccC
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI---AIARALIKKSKILLLDEATS 570 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi---aLARAll~~p~IliLDEaTS 570 (644)
+++...++..++ +. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 --------eqL~~~~~~~gl-----------~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 --------EQLKIWGERVGA-----------TV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHHHTC-----------EE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHHcCC-----------cE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 222223333332 11 1 13579999999 99999999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-11 Score=121.49 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=92.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
++|++++++|++||||||++..|++.+.|.+| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998778 25777777773 333333332
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHH
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~ 585 (644)
..++..++ | .... ..++..+.+++++ ++|+++|+| |+++|...+..+.+...
T Consensus 155 -------~~~~~~gl-------~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 155 -------TYAELLQA-------P----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -------HHHTTTTC-------C----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -------HHHHhcCC-------C----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 12221121 1 1111 1234567788875 999999999 99999877665554332
Q ss_pred HHc---CCceEEEE--ccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 586 KLI---EGKTVLTI--AHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 586 ~~~---~~~TvI~I--aHrl~~i~~-aD~Iivl~~G~ive 619 (644)
-.. .+.+++++ +|....+.. +|++..++.|.++-
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 221 23456666 899776654 77776677777775
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-11 Score=131.98 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
.+.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2369999999999 9999999999999999999999999999999999999976554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-11 Score=116.95 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=69.2
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
|+..-+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999987 78888 799999999999999876 7999999
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAK 516 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~ 516 (644)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~------~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK------FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE------HHHHHHHHH
T ss_pred hhhhhce-ecccc------hhhHHHHHh
Confidence 9999999 48854 455555544
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-13 Score=138.52 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=71.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCC-------CEEEEECCCCCcHHHHHHHHhccC----CCCCcEEEECCccCCC
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSG-------SMTSVIGSSGSGKSTLAMLLLRLY----DPQNGKILIDGVDIKE 468 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-------~~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~ 468 (644)
++.++++..|. .+.+++++++.+++| +.++|+||+|+|||||+++++|.+ .|++|.+..++.++..
T Consensus 19 lr~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 34445555564 246899999999887 899999999999999999999998 7788888877776643
Q ss_pred CChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 469 LDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
+-....+..|.++.|.+.++. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 211112457999999888776 8888875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-12 Score=133.60 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=98.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++++...|. .+.+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++........++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4556666663 246899999999999 99999999999999999999986 7999999988766555566677888
Q ss_pred EecCCC-CC-cccHHHHH-hcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 481 VSQEPT-LF-SGTIYENI-LYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 481 V~Q~~~-Lf-~gTIreNI-~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
++|++. .+ .-++.||| .++...... ...++..+.+ ..+. ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888754 33 34566777 343211000 0111221111 1111 1378999999999999
Q ss_pred HccCCCEEEeecccC
Q psy5743 556 LIKKSKILLLDEATS 570 (644)
Q Consensus 556 ll~~p~IliLDEaTS 570 (644)
+..+|++ ||++.-
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-11 Score=131.13 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=96.3
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEECCccCCCCChHHHhc--ce-EEEecCCCCCcccHHH
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILIDGVDIKELDPMYLRS--QI-GSVSQEPTLFSGTIYE 494 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~idg~~i~~~~~~~lr~--~i-~~V~Q~~~Lf~gTIre 494 (644)
.+++++.+|..++|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. ++ +.|-+|+. -..+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788899999999999999999999999887 67777799988888877655444432 11 11111110 0111
Q ss_pred HHhcCCCCCCCCCHHHHH---HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH----------HHHHHHccCCC
Q psy5743 495 NILYGVNDSSSVTKSDII---HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI----------AIARALIKKSK 561 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~---~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi----------aLARAll~~p~ 561 (644)
++..- .+|+. +.++..++.++ . +|+..+. ..+||||+||. ++||++-..|.
T Consensus 235 ~L~~~--------~~EmerR~~ll~~~Gv~~i-~----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 235 ALRWC--------VNEMERRYKLMSALGVRNL-A----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHH--------HHHHHHHHHHHHHTTCSSH-H----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHH--------HHHHHHHHHHHHHcCCccH-H----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 22110 11121 12222222111 1 1221111 23688888753 46777888898
Q ss_pred -EEEeecccCCCCHHHHHHHHHHHHH---HcC--CceEEEEccCch
Q psy5743 562 -ILLLDEATSALDAENEYLVQSAIEK---LIE--GKTVLTIAHRLS 601 (644)
Q Consensus 562 -IliLDEaTSaLD~~~e~~i~~~l~~---~~~--~~TvI~IaHrl~ 601 (644)
++++||+++.+|... ..+.+.|.+ ..+ +.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 234444432 222 779999999998
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-11 Score=120.53 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCCCc-----ccHHH
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTLFS-----GTIYE 494 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-----gTIre 494 (644)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|+++.... ..++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888876543 222223899999998765 477 9
Q ss_pred HHh--cC-----------CC-CCCCCCHHHHHHHHHHHhhcc
Q psy5743 495 NIL--YG-----------VN-DSSSVTKSDIIHAAKEANAYG 522 (644)
Q Consensus 495 NI~--~g-----------~~-~~~~~~~~~i~~a~~~a~l~~ 522 (644)
|+. |. .. .........+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 994 22 00 001123456788888887754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-12 Score=137.74 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=109.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------cCCCCCcEEEECCccCCCCCh-HHHhcce---EEEecCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLR------------LYDPQNGKILIDGVDIKELDP-MYLRSQI---GSVSQEPTL 487 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~idg~~i~~~~~-~~lr~~i---~~V~Q~~~L 487 (644)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. -.-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 678999999999854321110 0001122 366677766
Q ss_pred Ccc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC--CEEE
Q psy5743 488 FSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS--KILL 564 (644)
Q Consensus 488 f~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p--~Ili 564 (644)
..+ |-.|++ ..+....++.+..--++.+. .+ ...-..+||+. || ++++
T Consensus 96 ~~~~s~~e~L-----------~~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL-----------GNAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS-----------CHHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH-----------HHHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhh
Confidence 543 111111 11222222222111111111 11 12223356652 89 9999
Q ss_pred eecccCCCCHHHHHHHHHHHHHH-cC-CceEEEEccCchHH-hhcCEEE-EEeCC-eEEEecChh
Q psy5743 565 LDEATSALDAENEYLVQSAIEKL-IE-GKTVLTIAHRLSTI-RKSNQIC-VLDKG-KIVEIGSYA 624 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~-~~-~~TvI~IaHrl~~i-~~aD~Ii-vl~~G-~ive~Gt~~ 624 (644)
+|||++.+|.+.-+...+.+... .+ ++|+ ++|.+..+ .-||+|. +|++| +++..|+.+
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999888888888776 44 4553 49998876 5589999 99999 887666543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.9e-09 Score=102.21 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=89.8
Q ss_pred cccce-eEEEeCCCEEEEECCCCCcHHHHHH-HHhccCCCCCcEEEECCccCCCCChHHHhc---ceEEEecCCCCCccc
Q psy5743 417 ILNDL-SLKIQSGSMTSVIGSSGSGKSTLAM-LLLRLYDPQNGKILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSGT 491 (644)
Q Consensus 417 vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~-lL~g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~gT 491 (644)
.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+++++.. +...+++ .+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46665 5679999999999999999999955 5555555444555565532 2233222 23333322100
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeeccc
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEAT 569 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaT 569 (644)
.+|+.+.+.. . +.+..++. .+..+-+. +....+....++.++ .+|+++++|++|
T Consensus 83 -~~~l~~~~~~-----~-------------~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~ 138 (247)
T 2dr3_A 83 -KGMFAMVDAF-----T-------------AGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVT 138 (247)
T ss_dssp -HTSEEEEECS-----T-------------TTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSG
T ss_pred -CCcEEEEecc-----h-------------hhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCch
Confidence 0122111100 0 00000000 00001111 123344445555554 479999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHc--CCceEEEEccCchH---------HhhcCEEEEEeC
Q psy5743 570 SAL--DAENEYLVQSAIEKLI--EGKTVLTIAHRLST---------IRKSNQICVLDK 614 (644)
Q Consensus 570 SaL--D~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~---------i~~aD~Iivl~~ 614 (644)
+-+ |....+.+...+.+.. .+.|+|+++|.... ...||.|+.|+.
T Consensus 139 ~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 139 TLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 987 5533344444454432 37899999998764 366899999964
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-10 Score=110.50 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKIL----------IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
+|+.++|+||||||||||+++|++++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 7999999999999999999999999873 445443 47888888888888874 678999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAK 516 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~ 516 (644)
.+|.+ .+.+.++++
T Consensus 81 -~yg~~------~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGTK------LETIRKIHE 94 (180)
T ss_dssp -EEEEE------HHHHHHHHH
T ss_pred -ccccc------HHHHHHHHH
Confidence 57743 455655554
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.1e-11 Score=112.81 Aligned_cols=143 Identities=25% Similarity=0.191 Sum_probs=76.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCC-----------CCcEEEECCccCCC--CChHHHhcceEEEecCCCCCcc--cHHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDP-----------QNGKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSG--TIYE 494 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~~Lf~g--TIre 494 (644)
+++|+|++|||||||++.+.|...| .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 58999999976531 2222222223333321110000 0111
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+... .+.+++....+...-... ...| --.++.. ..|..-..+...+||++.++|+++++| ||++|.
T Consensus 111 ~~~~-------~s~~~~~~~~~~~~~~~~-~~~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH-------LTYENVERWLKELRDHAD-SNIV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH-------HHHHTHHHHHHHHHHHSC-TTCE---EEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH-------HHHHHHHHHHHHHHHhcC-CCCc---EEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1000 001111111111000000 0000 0001110 011111123478899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q psy5743 575 ENEYLVQSAIEK 586 (644)
Q Consensus 575 ~~e~~i~~~l~~ 586 (644)
++...+.+.|.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999888888765
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-11 Score=118.56 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP------- 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~------- 471 (644)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488899866552 1 455666 8999999999999999999999999999999999999844332
Q ss_pred -HHHhcceEEEecC
Q psy5743 472 -MYLRSQIGSVSQE 484 (644)
Q Consensus 472 -~~lr~~i~~V~Q~ 484 (644)
...+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999984
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-12 Score=128.05 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
.+++++...|. .+.+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45677777774 246899999999999 99999999999999999999986 799999998876655555667788
Q ss_pred EEecCCC-CC-cccHHHHH-hcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPT-LF-SGTIYENI-LYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~-Lf-~gTIreNI-~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
.++|+.. .+ .-++.||| .++..... ....++..+.+ ..+. ..|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEE
Confidence 8888754 23 34566777 44321100 00111211111 1111 136799999999999
Q ss_pred HHccCCCEEEeecccC
Q psy5743 555 ALIKKSKILLLDEATS 570 (644)
Q Consensus 555 All~~p~IliLDEaTS 570 (644)
|+..+|++ +|++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788875
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-09 Score=123.53 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCCCChHHHhcceEEEecCC--------
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKELDPMYLRSQIGSVSQEP-------- 485 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-------- 485 (644)
..+++++++.+++|+.+.|+||+|+|||||++.|.+++++.. |.+.+++.+.....+ .++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p-----~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP-----RIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC-----EEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC-----cEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 899999987766543 688888754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 486 --------------TLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 486 --------------~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.| ..++.+|+..++....... +... -......+-..++.. ......+|+|+.|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~---~v~~-----~~~~~~~L~G~~~~~-~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAP---FIDA-----TGAHAGALLGDVRHD-PFQSGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCC---EEEC-----TTCCHHHHHCEECCC-CC----CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCC---EEEc-----CCCCHHhcCceEEec-hhhcCCccccccccc
Confidence 111 1122333332211000000 0000 000000111011111 012235999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~ 586 (644)
..++....++.+|+|||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 798888888888864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-09 Score=108.64 Aligned_cols=143 Identities=21% Similarity=0.339 Sum_probs=84.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE-EEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK-ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~ 502 (644)
-+++|+.+.|.||+|||||||+..++.......|. ++++... ..++ .+.+++++.+|+ +.+..|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 58899999999999999999988887665544443 3344321 1111 111112211111 101000
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCCC--------
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSAL-------- 572 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSaL-------- 572 (644)
.++ .|-+.++|++.++ |+++++||+++-+
T Consensus 122 ---------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~ 160 (349)
T 2zr9_A 122 ---------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGE 160 (349)
T ss_dssp ---------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC
T ss_pred ---------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccc
Confidence 012 2445688888765 9999999999998
Q ss_pred --CH---HHHHHHHHHHHHH-----cCCceEEEEccCch----------------HH-hhcCEEEEEeCCeEEEecC
Q psy5743 573 --DA---ENEYLVQSAIEKL-----IEGKTVLTIAHRLS----------------TI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 573 --D~---~~e~~i~~~l~~~-----~~~~TvI~IaHrl~----------------~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|. ..++.+.+.++++ ..+.|+|+++|-.+ .+ ..||.++.++.+++...|+
T Consensus 161 ~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 161 MGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1222333444333 13889999999543 13 4689999998877654444
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=111.20 Aligned_cols=177 Identities=11% Similarity=0.140 Sum_probs=110.8
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcce-EEEecCCCCCcccHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQI-GSVSQEPTLFSGTIY 493 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i-~~V~Q~~~Lf~gTIr 493 (644)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+.+ .+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 458888878999999999999999999999999998876555 56655533 3445554432 1111100 1
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSA 571 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSa 571 (644)
+++.-|. .++++..++.+..+. +...| -.+-+ ...+|++|.+ +.||++. .+|+++++|+++.-
T Consensus 261 ~~l~~g~-----l~~~~~~~~~~a~~~---l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNLRTGK-----LTPEDWGKLTMAMGS---LSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHHHTSC-----CCHHHHHHHHHHHHH---HHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHHhcCC-----CCHHHHHHHHHHHHH---HhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 2232231 445554333332221 11111 12222 2478999876 6777776 57999999999997
Q ss_pred CCHH--------HHHHHHHHHHHHc--CCceEEEEcc-----------Cch---------HHhhcCEEEEEeCCeE
Q psy5743 572 LDAE--------NEYLVQSAIEKLI--EGKTVLTIAH-----------RLS---------TIRKSNQICVLDKGKI 617 (644)
Q Consensus 572 LD~~--------~e~~i~~~l~~~~--~~~TvI~IaH-----------rl~---------~i~~aD~Iivl~~G~i 617 (644)
.+.. .-..+.+.|+.+. .+.++|+++| |+. .-..||.|+.|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7431 1245555565543 2789999999 132 3356999999987654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-10 Score=107.71 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=46.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
+-=++++|++++|+|+|||||||+++.|.+.++ .+.+++||++++++ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334578999999999999999999999999885 48899999999987 6776654
Q ss_pred C
Q psy5743 501 N 501 (644)
Q Consensus 501 ~ 501 (644)
+
T Consensus 68 ~ 68 (207)
T 2qt1_A 68 N 68 (207)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-09 Score=123.37 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=66.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++.+.+.++.+++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 456789999999999999999999999988765 78999 7999999999999999999999999999888888875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-11 Score=127.66 Aligned_cols=141 Identities=19% Similarity=0.165 Sum_probs=89.1
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
..+++++|+++++|+.++|+||+|||||||+++|.|.+ +|++..-+ .. .+.++..+++++|...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HH
Confidence 35899999999999999999999999999999999964 68876521 11 122344588899987653 34
Q ss_pred HHhcCCCCCCCC---CH----HHHHHHHHH---Hhhc----cchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 495 NILYGVNDSSSV---TK----SDIIHAAKE---ANAY----GFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 495 NI~~g~~~~~~~---~~----~~i~~a~~~---a~l~----~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
++....+..... +. ..+.+.+.- +.+. +.+.. +|.| .+.++-..+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCC
Confidence 554443200000 10 111121110 0000 00000 1111 23345566899999999999999999
Q ss_pred CCEEE-eecccC
Q psy5743 560 SKILL-LDEATS 570 (644)
Q Consensus 560 p~Ili-LDEaTS 570 (644)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99998 999987
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-09 Score=103.77 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=56.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKIL----------IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 333333 457777777888877765 6888888888888
Q ss_pred HHhcCC
Q psy5743 495 NILYGV 500 (644)
Q Consensus 495 NI~~g~ 500 (644)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 8 5774
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-09 Score=100.69 Aligned_cols=139 Identities=24% Similarity=0.185 Sum_probs=73.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC-----CC------CcEEEECCccCC-----CCChHHHhcceEEEecCCC--C--Cc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD-----PQ------NGKILIDGVDIK-----ELDPMYLRSQIGSVSQEPT--L--FS 489 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~-----p~------~G~I~idg~~i~-----~~~~~~lr~~i~~V~Q~~~--L--f~ 489 (644)
+++|+|++|||||||++.+.|... |+ .|+|.++|.++. .-..+.+++......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 43 678999997652 1222333333333333321 1 11
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
.+-.. +.+++....+...-.. -...| --.++.. ..|..-.......||++.++|++.++| |
T Consensus 87 ~~~~~------------s~~~~~~~~~~~~~~~-~~~~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHL------------TYENVERWLKELRDHA-DSNIV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHH------------HHHTHHHHHHHHHHHS-CTTCE---EEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHH------------HHHHHHHHHHHHHHhc-CCCCe---EEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 11110 0111111111110000 00000 0011111 011110011245699999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy5743 570 SALDAENEYLVQSAIEKL 587 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~ 587 (644)
||+|.++-..+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999888887777553
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-08 Score=107.63 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=81.8
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
..++++++++++| +.|+||+|+|||||++.+.+..... +-++ +..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~-- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGS-- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGG--
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHH--
Confidence 4677888888888 9999999999999999999854210 1011 000
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC-----
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS----- 570 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS----- 570 (644)
+++.. .+| .|++++|-.+++|....|.|+++||+.+
T Consensus 84 --------------------------~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 84 --------------------------DFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp --------------------------GTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred --------------------------HHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 00000 112 2788999999999999999999999943
Q ss_pred -----CCCHHHHHHHHHHHHHH-----cCCceEEEEccCchHHh-------hcCEEEEE
Q psy5743 571 -----ALDAENEYLVQSAIEKL-----IEGKTVLTIAHRLSTIR-------KSNQICVL 612 (644)
Q Consensus 571 -----aLD~~~e~~i~~~l~~~-----~~~~TvI~IaHrl~~i~-------~aD~Iivl 612 (644)
+.|.+.++.+.+.+..+ ..+..+|..||+++.+. ..|+.+.+
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 56666666666555443 13568899999986543 45655544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-09 Score=109.20 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=34.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEEC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILID 462 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~id 462 (644)
.+|+++++++| .|+|||++|||||||++.|.| ++++.+|.+.-.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 47899999999 999999999999999999999 778877766533
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-09 Score=102.31 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
+++++|+.++|+|||||||||++++|.+++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-09 Score=99.31 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=63.5
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc--cCCCCChH----HHhcceEEEecCCC------
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV--DIKELDPM----YLRSQIGSVSQEPT------ 486 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~--~i~~~~~~----~lr~~i~~V~Q~~~------ 486 (644)
+++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++-..... ..+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999999887775443331 11111110 23457999999863
Q ss_pred ----CCcccHHHH----HhcCCCCCCCCCHHHHHHHHHHHhhc
Q psy5743 487 ----LFSGTIYEN----ILYGVNDSSSVTKSDIIHAAKEANAY 521 (644)
Q Consensus 487 ----Lf~gTIreN----I~~g~~~~~~~~~~~i~~a~~~a~l~ 521 (644)
.+..++..+ +... ....+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~---g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN---GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET---TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC---CeEcCHHHHHHHHHHcCCC
Confidence 222222111 1111 1125677888888777765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-09 Score=105.57 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=36.3
Q ss_pred cEEEEEE-EEEcCCCCCCccccceeEEEeC---CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 399 EIDFNNI-RFSYPSRPDAVILNDLSLKIQS---GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 399 ~I~~~~v-sf~Y~~~~~~~vL~~isl~i~~---G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++++|+ +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 45799999999999 9999999999999999999999866
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-09 Score=117.02 Aligned_cols=92 Identities=25% Similarity=0.221 Sum_probs=65.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EE-EECCccCCC-------CCh---HHHhcceEEEecCCCCCcc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KI-LIDGVDIKE-------LDP---MYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I-~idg~~i~~-------~~~---~~lr~~i~~V~Q~~~Lf~g 490 (644)
..+++|+.++|+|+||||||||+++|.|.+.|++| +| ++||.++.+ ++. ..+++.+++|.|+ -
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----I 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----H
Confidence 35789999999999999999999999999999987 78 599987643 232 2355678999987 2
Q ss_pred cHHHHHhcCCCCC-CCCCHHHHHHHHHHHh
Q psy5743 491 TIYENILYGVNDS-SSVTKSDIIHAAKEAN 519 (644)
Q Consensus 491 TIreNI~~g~~~~-~~~~~~~i~~a~~~a~ 519 (644)
+..+|+.+..... ....+++..++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4566766543210 0123455666666555
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-08 Score=96.29 Aligned_cols=52 Identities=38% Similarity=0.520 Sum_probs=46.0
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE--EECCccCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI--LIDGVDIK 467 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~ 467 (644)
....+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346778888899999999999999999999999999997 78988 99986654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-08 Score=105.88 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=84.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC-----------CCCcEEEECCccCCCCChHHHhcceEEEecCCCC----CcccHH-
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD-----------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL----FSGTIY- 493 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~-----------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L----f~gTIr- 493 (644)
.|+|+|++|+|||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 67899999997653 33456776664432 222322
Q ss_pred ----HHHhcCCCCCCCCC---HHHH---HHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH----HHH-cc
Q psy5743 494 ----ENILYGVNDSSSVT---KSDI---IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA----RAL-IK 558 (644)
Q Consensus 494 ----eNI~~g~~~~~~~~---~~~i---~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA----RAl-l~ 558 (644)
|++.+--+. .... ++.+ .+.++..++. ..| --.|+..-..+|+|++||+.++ +++ ..
T Consensus 255 ~~~aD~il~VvD~-s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 255 AKYSDALILVIDS-TFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGSSEEEEEEET-TSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHhCCEEEEEEEC-CCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 122221110 1111 1111 2222222211 111 1223444445788899988877 776 44
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+|++ +||||+|.++-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 5555 8999999998888888886643
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-08 Score=97.97 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=43.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cceEEEecCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQIGSVSQEPT 486 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~i~~V~Q~~~ 486 (644)
.++.++|+.++|+|+||||||||+++|.+.+ |.+.++|.++.. ....+ ...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcc
Confidence 3567899999999999999999999999988 999999988753 22222 24677777644
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-08 Score=95.43 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=25.3
Q ss_pred EcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 408 ~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+.++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466556778999999999999999999999999999999999877
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-08 Score=102.15 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=56.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHH-----hcceEEE-ecCC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYL-----RSQIGSV-SQEP 485 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~l-----r~~i~~V-~Q~~ 485 (644)
++++||++++|++++|+|++||||||++..|++.+.+..|+|.+.+.|+..... ..| +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888889999999999999999999999999999999999999988865432 345 5678888 6654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-09 Score=114.48 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=95.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++++...|. .+.+++++++++++| +.|+||+|+|||||++++.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4455554453 245789999999999 99999999999999999999985 6899999999877666666677888
Q ss_pred EecCCC-CCc-ccHHHHH-hcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 481 VSQEPT-LFS-GTIYENI-LYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 481 V~Q~~~-Lf~-gTIreNI-~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
++|+.. ... -.+-|+| .++..... ....++..+.+.. .+. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888764 232 3456677 34321100 0112222222111 111 256778888888888
Q ss_pred HccCCCEEEeecccCC
Q psy5743 556 LIKKSKILLLDEATSA 571 (644)
Q Consensus 556 ll~~p~IliLDEaTSa 571 (644)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 8888877 7887653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=91.10 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=73.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
.++|+|++||||||+.+.|.++ |...+|+-+ +.+. +. .+. .+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~------------------~~--~~~-----~~ 45 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VARE------------------VV--AKD-----SP 45 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHH------------------TT--CSS-----CH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHH------------------Hc--cCC-----hH
Confidence 6899999999999999999983 666666522 1111 10 010 11
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
.+.+..+..| +. .-.++|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+... .
T Consensus 46 ~~~~i~~~~g-----------------~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~ 104 (206)
T 1jjv_A 46 LLSKIVEHFG-----------------AQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-T 104 (206)
T ss_dssp HHHHHHHHHC-----------------TT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-C
T ss_pred HHHHHHHHhC-----------------HH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-C
Confidence 1111112211 11 123688999999999999888654333 3345565555555555433 3
Q ss_pred CceEEEEccCchH---HhhcCEEEEEeC
Q psy5743 590 GKTVLTIAHRLST---IRKSNQICVLDK 614 (644)
Q Consensus 590 ~~TvI~IaHrl~~---i~~aD~Iivl~~ 614 (644)
+.++|+-+|.+.. .+.||.+++++-
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 5688888887654 367999999963
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-08 Score=105.14 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=76.6
Q ss_pred CccccceeEEEeCCC------EEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGS------MTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~------~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
...|++++..+.+++ ++||+||||||||||+++|.+++.+ .+| .++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeeccc
Confidence 356788888887776 9999999999999999999999974 444 4556667766
Q ss_pred CCcccHHHHH----hcCCCCCCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 487 LFSGTIYENI----LYGVNDSSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 487 Lf~gTIreNI----~~g~~~~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
.......+.. .+|.|+ ..+.+.+.+.++...-.+ .+ ..|. ||-..+ +|+.-+......|+
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~--~~D~~~l~~~L~~L~~g~~~v-~~P~-yd~~~~-----------~r~~~~~~~v~~~d 198 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPE--SYDMPSLLRVLNAIKSGQRNV-RIPV-YSHHYY-----------DIVRGQYEIVDQPD 198 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGG--GBCHHHHHHHHHHHHTTCSSE-EEEE-EETTTT-----------EEEEEEEEEECSCS
T ss_pred ccchhhhhhHHHHhhccCcc--cccHHHHHHHHHhhhcccccc-ccch-hhhhcc-----------ccccCceeeccCCC
Confidence 6655444432 134443 355666655554433221 11 1111 221111 22222234457899
Q ss_pred EEEeecccCCCCH
Q psy5743 562 ILLLDEATSALDA 574 (644)
Q Consensus 562 IliLDEaTSaLD~ 574 (644)
|+|++.+..-.|.
T Consensus 199 IVIvEGi~lL~~~ 211 (321)
T 3tqc_A 199 IVILEGLNILQTG 211 (321)
T ss_dssp EEEEECTTTTCCC
T ss_pred EEEEEcccccccc
Confidence 9999988765554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-07 Score=106.11 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHHHHHHHHHHcCC-ceEEE-EccCchHHh
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYLVQSAIEKLIEG-KTVLT-IAHRLSTIR 604 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~i~~~l~~~~~~-~TvI~-IaHrl~~i~ 604 (644)
.-+|+|+.+|..++++++.+++++|+|||.. .+|.+.-..+.+.+.+..++ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 89988766667777666544 45555 489877653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=92.31 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=81.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
.-+++++|++|+|||||++.|.|.. + .+++.+....+. .++.++++.. .+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~~-----~~~~~~~~~~--------~~----------- 216 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRGI-----NVGQFEDGYF--------RY----------- 216 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSCE-----EEEEEEETTE--------EE-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeece-----eEEEEEecCc--------eE-----------
Confidence 3479999999999999999999865 2 223322222111 2333333211 00
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee-cccCCCCHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD-EATSALDAENEYLVQSAIEK 586 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD-EaTSaLD~~~e~~i~~~l~~ 586 (644)
.+-+.|.-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+
T Consensus 217 ---------------~l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 217 ---------------QIIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp ---------------EEEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred ---------------EEEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 0112232222 123457999999887 66666777888999 99999999988888888877
Q ss_pred HcCCceEEEEc--cCch
Q psy5743 587 LIEGKTVLTIA--HRLS 601 (644)
Q Consensus 587 ~~~~~TvI~Ia--Hrl~ 601 (644)
...++.+|+|. |++.
T Consensus 277 ~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 277 EFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HTTTSCEEEEECCTTTC
T ss_pred hcCCCCEEEEEECcccC
Confidence 66578899998 7764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=93.79 Aligned_cols=165 Identities=19% Similarity=0.139 Sum_probs=98.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
+..++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 77 ~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3445666777532 1 578887 89999999999999999999999999999999999988876543322 2110
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHH-HHHHHHHhhccchhhhhcCccccccCCCCCCC---hhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI-IHAAKEANAYGFVIDFKNGFDTIVGERGIMLS---GGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i-~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS---GGQkQRiaLAR 554 (644)
.=+.|+-+.... ...+..++ .++++.+. ..+||..|=|.+..++ .-..+...++|
T Consensus 149 ------------~~~~gv~v~~~~-~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~ 207 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVM-DGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKE 207 (425)
T ss_dssp ------------HHHHTCCEEECC-TTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecC-CCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhh
Confidence 001222211100 11334444 22333221 2467766655444443 23566677888
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++..++-++++| ++++.|..... +.+.+. -+.+-|++|+
T Consensus 208 ~~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 208 VLGPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred ccCCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 886666677787 55665554321 233322 2567788876
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9.2e-08 Score=99.62 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=50.0
Q ss_pred CccEEEEEEEEEcCCCCCCcccc--------------ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILN--------------DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~--------------~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+.|+|+||+|.||. ++.+|+ |+++.+.+||+++|+|++|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 467999999999995 467899 9999999999999999999999999999999863
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.7e-07 Score=92.68 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=45.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECCccCCCCChHHHhcceEEEecCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDGVDIKELDPMYLRSQIGSVSQEP 485 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg~~i~~~~~~~lr~~i~~V~Q~~ 485 (644)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 489999999999999999999999999998887865 67764332 2 22555677666543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-07 Score=93.31 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++|+.+.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999999888754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-08 Score=99.05 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=48.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC------ChHH----HhcceEEEecCCCCCc
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL------DPMY----LRSQIGSVSQEPTLFS 489 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------~~~~----lr~~i~~V~Q~~~Lf~ 489 (644)
+.+.++|++++|+|++||||||++++|.|. .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445679999999999999999999999998 79999999886432 1111 2456788888765544
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=88.78 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 356655568999999999999999999998887665432222 333221
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
+.+.+++..-+..+...=...++-. | .||++++||++.|...+.+++++|.|+|..++|
T Consensus 83 --------Ems~~ql~~Rlls~~~~v~~~~l~~---------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 --------EMSAEQLALRALSDLTSINMHDLES---------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp --------SSCHHHHHHHHHHHHHCCCHHHHHH---------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred --------CCCHHHHHHHHHHHhhCCCHHHHhc---------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1445555443322211111222211 2 689999999999999999999999999876544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.8e-07 Score=86.10 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=42.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~ 472 (644)
..++|++++|+|+|||||||+++.|.+.++|..|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3568999999999999999999999999999999999888776655543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-07 Score=89.28 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
...|+|+|++||||||+.+.|... |-.++|..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 457999999999999999999986 7777776443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-07 Score=83.33 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 469999999999999999999999976 899999977653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.7e-07 Score=88.70 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
|++|||||..+|++++||||| |.++...+.+ ....++|+++++|..+....+|++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9887654443 3345899999999999888889887664
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=83.95 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=32.8
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc----CCceEEEEccCchHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI----EGKTVLTIAHRLSTI 603 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~----~~~TvI~IaHrl~~i 603 (644)
.+|.++++||+... |.+....+.+.+.+.. .+.++|++||+++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999886 8777666666664432 366888899998543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.3e-06 Score=88.90 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=35.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
++..++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 6789999999999999999999999999888998866664
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=79.71 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=46.8
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH----------HHHHHHHHHHHc-----CCceEEEEccCchH-----
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAEN----------EYLVQSAIEKLI-----EGKTVLTIAHRLST----- 602 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~----------e~~i~~~l~~~~-----~~~TvI~IaHrl~~----- 602 (644)
++++++|-.+++|...+|.++++||+.+-.+... ...+...+.... .+..+|..|+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888889999889999999999988765421 223344444332 12356677887543
Q ss_pred HhhcCEEEEEe
Q psy5743 603 IRKSNQICVLD 613 (644)
Q Consensus 603 i~~aD~Iivl~ 613 (644)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 35677776664
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-06 Score=82.13 Aligned_cols=41 Identities=32% Similarity=0.454 Sum_probs=34.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDIK 467 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i~ 467 (644)
++|+.++|+|++||||||+++.|.+.++| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999999876 67 7777876554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.9e-05 Score=80.20 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.8e-06 Score=88.74 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=39.0
Q ss_pred CccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 415 AVILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+.+++.++..++.|+. +.+.||+|+||||+++.+++.+.+..|.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 4588999999999998 9999999999999999999998766543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.82 E-value=7.9e-05 Score=74.22 Aligned_cols=44 Identities=30% Similarity=0.411 Sum_probs=29.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
++++++..++| +.|+||+|+|||||++.+.+.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 45555555555 9999999999999999999987532 35555543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=81.66 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSS 504 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~ 504 (644)
++.+|+|+|++|+|||||++.|+|.- +.+ .+.+-. ...+..++++|+..- +.+.+ |.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~--------i~~iDTpG-- 65 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQ--------AIYVDTPG-- 65 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEE--------EEEESSSS--
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCee--------EEEEECcC--
Confidence 44589999999999999999999963 222 111111 123456778876541 22221 21
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCCHHH-HHH
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDT--IVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALDAEN-EYL 579 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T--~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD~~~-e~~ 579 (644)
... +-...+...-.......+. ..|- .|-+... +|+|++ .+++++- ..|.|+++ +-+|... ...
T Consensus 66 -~~~-~~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 66 -LHM-EEKRAINRLMNKAASSSIG-DVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp -CCH-HHHHHHHHHHTCCTTSCCC-CEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred -CCc-cchhhHHHHHHHHHHHHHh-cCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 110 1111111111000001111 1222 1122223 899886 5667665 67888888 5778765 455
Q ss_pred HHHHHHHHcC--C--ceEEEEccCchHH
Q psy5743 580 VQSAIEKLIE--G--KTVLTIAHRLSTI 603 (644)
Q Consensus 580 i~~~l~~~~~--~--~TvI~IaHrl~~i 603 (644)
+.+.+.++.+ + .++.+.||.-.-+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 5565655433 2 3555566665444
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=71.71 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.7e-05 Score=78.58 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=30.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 347777666999999999999999999998877753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=84.83 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=27.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 456 (644)
+++..+.|.||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999886543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.73 E-value=5.3e-06 Score=92.23 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=49.0
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
++++...|. +..+++++++++ +|+.++|+||+|+|||||++.|.+.+.+..|+|.++|..-..--....++.+|++
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 344444442 235678888888 8999999999999999999999999999999999888543222222334556666
Q ss_pred ecC
Q psy5743 482 SQE 484 (644)
Q Consensus 482 ~Q~ 484 (644)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=74.29 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.|+.++|+|++||||||+++.|.+.+.+ +++|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998854 66765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.1e-06 Score=79.01 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEE----------EECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKI----------LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I----------~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
...+|..++|+||||||||||++.|...++. ..+.+ .++|.+..-++.+.+...+ .|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 3568999999999999999999999988742 11211 2366666667777766532 34444444444
Q ss_pred HHH
Q psy5743 493 YEN 495 (644)
Q Consensus 493 reN 495 (644)
.+|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.7e-05 Score=82.34 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=43.6
Q ss_pred cc-CCCEEEeecccCCCCH-HHHHHHHHHHHHHc-CCceEEEEccCch-HHh-hcCEEEE-EeCCeEEEecCh
Q psy5743 557 IK-KSKILLLDEATSALDA-ENEYLVQSAIEKLI-EGKTVLTIAHRLS-TIR-KSNQICV-LDKGKIVEIGSY 623 (644)
Q Consensus 557 l~-~p~IliLDEaTSaLD~-~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i~-~aD~Iiv-l~~G~ive~Gt~ 623 (644)
++ +|++|++||+..-.+. .+...+...+.++. .++++|+.||+.. .+. ..+++.- ++.|.+++.+.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 45 8999999999887765 56667777776654 4678889999843 222 1222222 455666655544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=5.6e-06 Score=80.20 Aligned_cols=44 Identities=36% Similarity=0.360 Sum_probs=39.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDI 466 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i 466 (644)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988889 899987443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=86.18 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=102.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHH
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYEN 495 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreN 495 (644)
-++||+|++|+|||||++.|+|... |.+|.+.++|.++.-+|..-+++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 7889999999988777776667666776676666642 33455
Q ss_pred HhcCC------CCCCCCCHH--HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEe
Q psy5743 496 ILYGV------NDSSSVTKS--DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLL 565 (644)
Q Consensus 496 I~~g~------~~~~~~~~~--~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliL 565 (644)
+...+ +.....+.+ ++.+.++..+..-.+ .-+..|-. .++. -+--+- .-.+++.+. ...+++
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~il--v~NK~Dl~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-- 332 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV--VFNKWDLV-VHRE--KRYDEF-TKLFREKLYFIDYSPLI-- 332 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE--EEECGGGS-TTGG--GCHHHH-HHHHHHHCGGGTTSCEE--
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEECccCC-Cchh--hHHHHH-HHHHHHHhccCCCCcEE--
Confidence 54431 100112332 233333322211000 00112211 0000 011111 113455443 345554
Q ss_pred ecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hh---------cCEEEEEeC-----CeEEEecChhHHhcCC
Q psy5743 566 DEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RK---------SNQICVLDK-----GKIVEIGSYAHLIKNP 630 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~---------aD~Iivl~~-----G~ive~Gt~~eLl~~~ 630 (644)
+|||++.++-..+.+.+.+.....+.-+-||++..+ .. -=+|..+-+ -.++-.++.-+++.
T Consensus 333 --~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~~-- 408 (439)
T 1mky_A 333 --FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVK-- 408 (439)
T ss_dssp --ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCC--
T ss_pred --EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccCC--
Confidence 499999988777777776655444433455555432 11 115544432 24455666666663
Q ss_pred CcHHHHHHHhhc
Q psy5743 631 NSMFNKLMKYQT 642 (644)
Q Consensus 631 ~~~y~~l~~~q~ 642 (644)
..|.+.+.++.
T Consensus 409 -~~y~r~l~~~~ 419 (439)
T 1mky_A 409 -NPQKIFLRKLI 419 (439)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 34777777664
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.7e-05 Score=75.73 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=72.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~ 503 (644)
+..|+.+.++||+||||||++.+.+.......|. ...+.++.|.|... .-++.+|+.-....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4579999999999999999888765432222111 12566777777644 34677777533211
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC---CChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM---LSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYL 579 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~---LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~ 579 (644)
... ..++. ....+......+.. -+.|.-.+.. +.-+++-+++|+||+-. ++|......
T Consensus 136 -~~~--------~~~g~-------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 136 -EPG--------KSCGY-------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp -CTT--------SSEEE-------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred -ccC--------ceEEE-------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHH
Confidence 000 00000 00011111111111 2446655553 44689999999999976 477665544
Q ss_pred HHHHHHHHcCCc
Q psy5743 580 VQSAIEKLIEGK 591 (644)
Q Consensus 580 i~~~l~~~~~~~ 591 (644)
..+.+....++.
T Consensus 198 ~l~~i~~~~~~~ 209 (235)
T 3llm_A 198 VLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHCTTS
T ss_pred HHHHHHhhCCCC
Confidence 445554444443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.67 E-value=1.4e-05 Score=78.47 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=33.3
Q ss_pred ccceeEEEe---CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 418 LNDLSLKIQ---SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 418 L~~isl~i~---~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 455555555 8999999999999999999999999988 67776544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1e-05 Score=77.40 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=38.6
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc----C----CCCCcEEEECCcc
Q psy5743 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----Y----DPQNGKILIDGVD 465 (644)
Q Consensus 406 sf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----~----~p~~G~I~idg~~ 465 (644)
+|+|++ -..+++++|++.+++ +++++|++|+|||||++.+.+- + .++.+.+.++|.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 567775 346899999998887 5899999999999999999872 2 2344566666543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.62 E-value=7.4e-06 Score=85.62 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=46.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
.+++++++++++|..++|+|++|+|||||++.|++.+.+..|+|.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 57889999999999999999999999999999999998888888877666543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.8e-06 Score=82.60 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEE--------ECCccCCCCC-hHHHhcceEEEe------cCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKIL--------IDGVDIKELD-PMYLRSQIGSVS------QEPTLF 488 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~--------idg~~i~~~~-~~~lr~~i~~V~------Q~~~Lf 488 (644)
.+-.++|+|||||||||+.+.|. |+...+.|.++ -+|.+..+.. ...+.+.+.+.. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 54445566652 3466655543 445666666666 455666
Q ss_pred cccHHHHHh
Q psy5743 489 SGTIYENIL 497 (644)
Q Consensus 489 ~gTIreNI~ 497 (644)
...|.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 666766653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0001 Score=75.54 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.++++..+.|.||+|+|||||++.+.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999999874 34444443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.2e-05 Score=82.19 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
+++.+|+|+|++|||||||++.|.|.+.|.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 46789999999999999999999999999999999988776543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00037 Score=72.91 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=32.8
Q ss_pred cccceeEE---EeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECC
Q psy5743 417 ILNDLSLK---IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG 463 (644)
Q Consensus 417 vL~~isl~---i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg 463 (644)
-|+.+ +. +++|+.+.|.|++|||||||+.-++....... ..++++.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45554 33 88999999999999999999988776543322 2344444
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00034 Score=70.56 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++++..+.|.||+|+|||||++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999999876
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=8.6e-05 Score=76.75 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45789999999999999999999987543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.9e-05 Score=70.96 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999988777 889999999999999999998
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=69.19 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999877544
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7.4e-06 Score=78.40 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=39.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC------CCCCcEEEECCccCCCCChHH-------------HhcceEEEecCCCCCcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY------DPQNGKILIDGVDIKELDPMY-------------LRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~------~p~~G~I~idg~~i~~~~~~~-------------lr~~i~~V~Q~~~Lf~g 490 (644)
.++|+|++||||||+++.|...+ +|..|...++.. .. +... ++.....+.|+..+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQY-YK--DLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHH-TT--CHHHHHHHHHHHHHHHHHHHHC------CEEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHH-Hh--CccccchhHHHHHHHHHHHHHHHhhccCCEEEEe
Confidence 68999999999999999999843 443332222110 00 1111 23334566777788898
Q ss_pred cHHHHHhcC
Q psy5743 491 TIYENILYG 499 (644)
Q Consensus 491 TIreNI~~g 499 (644)
++.+|+.+.
T Consensus 79 ~~~~~~~~~ 87 (205)
T 2jaq_A 79 TLLEDPIFM 87 (205)
T ss_dssp CTTTHHHHH
T ss_pred ccchhHHHH
Confidence 888888764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00055 Score=69.88 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
...+.++||+|+||||+++.+.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45799999999999999999999998776644
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.37 E-value=9e-05 Score=68.98 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999865
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=8e-05 Score=72.77 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999987654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0007 Score=73.20 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46666655899999999999999999999888776543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=78.10 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
+.|++-...++..+++++++|+....+.-.......+.+.+++ .++.+|+|.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 4588888999999999998887655444333344456666654 4788999999887653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.27 E-value=4.8e-05 Score=77.73 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=49.9
Q ss_pred EEEEEEEEcCCCCCCccccc-eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 401 DFNNIRFSYPSRPDAVILND-LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~-isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
..++++..|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 76 ~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 76 VYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 3445555564321 45 777776 999999999999999999999999999999999988887653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=69.09 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999987
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=7.2e-05 Score=77.95 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.1
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++|+++|| ...++.+....+.+.+.+...+..+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888876555567777777653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00011 Score=70.24 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
...++|+|++||||||+++.|.+.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999887 5667766443
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=73.15 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
..++|..+.|+|++||||||+.+.|.+.+. .|.+.+||..++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456788999999999999999999999885 3678888865543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00011 Score=69.26 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=34.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDG 463 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg 463 (644)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345899999999999999999999999998777765 4554
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=58.78 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
+.+.-|.|.||+|+|||++++.+.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 456679999999999999999998876543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=64.48 Aligned_cols=30 Identities=37% Similarity=0.624 Sum_probs=24.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+..+++.+| ..+|+||+||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555554 899999999999999999873
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00017 Score=70.17 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
.+|.++++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 78777777777776654566788888876543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00019 Score=67.20 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i 466 (644)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 4689999999999999999999987543 37777777553
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0002 Score=67.80 Aligned_cols=63 Identities=30% Similarity=0.452 Sum_probs=44.8
Q ss_pred EEEECCCCCcHHHHHHHHhccC-------------CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY-------------DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~-------------~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
+.|+||||||||||++.|+..+ +|-.|++ ||+|.--++.++..+.+ .++-++-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999999998654 3556765 89888888888776643 34444545554444 3
Q ss_pred cC
Q psy5743 498 YG 499 (644)
Q Consensus 498 ~g 499 (644)
||
T Consensus 78 YG 79 (186)
T 1ex7_A 78 YG 79 (186)
T ss_dssp EE
T ss_pred ee
Confidence 55
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=5.4e-05 Score=79.65 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=36.9
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.|.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456899999988853 46789999976 99999999999999999988666666554443
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00097 Score=68.76 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999887753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.12 Score=57.44 Aligned_cols=95 Identities=6% Similarity=0.024 Sum_probs=55.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 72 LAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMK-EKMTSLS---LLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~-~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
.+.++.+.....++++++..++..+.+.+...++..++..-..... .....+. ..+++..++..+...+..+....
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (578)
T 4a82_A 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (578)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667777777777788888888888877642110000 0022221 22223333334455556677777
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q psy5743 148 SAQSITKKLRERLFGSIIS 166 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~ 166 (644)
...++..++..++-.++++
T Consensus 84 ~~~~~~~~~~~~lr~~l~~ 102 (578)
T 4a82_A 84 LAQWTSNKILYDIRKKLYN 102 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777664
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00025 Score=74.86 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=35.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc-----------CCCCCcEEEECCc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL-----------YDPQNGKILIDGV 464 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~idg~ 464 (644)
.+..|.+++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4568899999999999999999999998 7889999988774
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.004 Score=61.62 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..-+.|.||+|+||||+++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999999865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00056 Score=62.86 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 699999999999999999999653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0031 Score=66.04 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++...+.|.||+|+|||||++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999999876
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.001 Score=64.71 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC-----------chHHhhcCEEEEEe
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-----------LSTIRKSNQICVLD 613 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr-----------l~~i~~aD~Iivl~ 613 (644)
+++++++||+-- ++.+.- .....+.+. +.++|++.|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~v-e~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRIC-EVANILAEN--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHH-HHHHHHHHT--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHH-HHHHHHHhC--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665422 223344443 8899999992 45578899999874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=1.7e-05 Score=83.63 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCChhHHHHHHHHHHHc-cCCCEEEeec---cc------CCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCE
Q psy5743 541 MLSGGQKQRIAIARALI-KKSKILLLDE---AT------SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll-~~p~IliLDE---aT------SaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~ 608 (644)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|.++.+ +.|+++++|--..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778889999999885 5999999999 55 68999999999999977655 7899999987555566788
Q ss_pred EEEEeCCeEEEecChhHHhc
Q psy5743 609 ICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 609 Iivl~~G~ive~Gt~~eLl~ 628 (644)
+..+++ +++.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 877765 667778888753
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=66.17 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=32.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
.+|..+.|.||+|+||||+++.+...+.....-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4678999999999999999999999887554556666544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00044 Score=64.72 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++++|++|+|||||++.+.|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999984
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0017 Score=68.19 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999987743
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00053 Score=64.28 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=65.23 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00061 Score=63.38 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0074 Score=64.56 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56799999999999999999999888765445543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0044 Score=66.80 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=27.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|+.+.--+++|+.+.|.|++|+|||||+--++.-.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44444358999999999999999999977666543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.75 E-value=1 Score=50.08 Aligned_cols=88 Identities=8% Similarity=-0.031 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 75 SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITK 154 (644)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (644)
++.+.....++++++..++..+......+++..++.... ....... ...+.+..++..++..+..+.......+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 16 RYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGI--ARGDFSL-VLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp GGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445444555555555554442110 0111111 1222222333333444444555555555555
Q ss_pred HHHHHHHHHHH
Q psy5743 155 KLRERLFGSII 165 (644)
Q Consensus 155 ~lr~~~~~~ll 165 (644)
++..++-.+++
T Consensus 93 ~~~~~lr~~l~ 103 (587)
T 3qf4_A 93 NFGADLRRDLF 103 (587)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0084 Score=61.70 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|+.-+.|.||+|+|||||++.+....
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999876
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00074 Score=71.70 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=43.9
Q ss_pred cCCCEEEeecccCCCC---HHHHHHHHHHHHHHcC-CceEEEEccCchHH-------------hhcCEEEEEeCC
Q psy5743 558 KKSKILLLDEATSALD---AENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-------------RKSNQICVLDKG 615 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD---~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-------------~~aD~Iivl~~G 615 (644)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++-+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 4566677777766544 77899999999755 467777887654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=59.73 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|.||+|+||||+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 566799999999999999998887763
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00025 Score=73.58 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=34.3
Q ss_pred ccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCC
Q psy5743 416 VILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 416 ~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999999 99999999999999999998653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0017 Score=66.00 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++...+.+.||+|+|||+|++.++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568889999999999999999877
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=61.51 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc-c----CCCCCc----EEEECCcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-L----YDPQNG----KILIDGVD 465 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-~----~~p~~G----~I~idg~~ 465 (644)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999975554 3 677777 66677643
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0066 Score=64.91 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=26.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-++|..-+.+.||+|||||+|++.+++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 467778899999999999999999999764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00079 Score=63.12 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0003 Score=67.65 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00079 Score=62.05 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..++|+|++||||||+++.|...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987753
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=67.12 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+|..+.|+|+|||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999988764 36677776
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=67.54 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=30.6
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888877 899999999999999999999987
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=62.79 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=23.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
+.++++.+ ...+|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455545 489999999999999999875
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=61.56 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00087 Score=70.38 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=42.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+++|||++|+|||||++.|.|.. + ++.+++.. |+..|+.... .+++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~~-----v~~~ 48 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVVP-----LEDE 48 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEEE-----CCCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeEe-----cChH
Confidence 58999999999999999999974 3 12222211 6666666552 5678
Q ss_pred HHHHHHHHHhhcc
Q psy5743 510 DIIHAAKEANAYG 522 (644)
Q Consensus 510 ~i~~a~~~a~l~~ 522 (644)
++..+++.++.++
T Consensus 49 ~l~~~~~~~~~~~ 61 (368)
T 2dby_A 49 RLYALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHHHCBTT
T ss_pred HHHHHHHHhcccc
Confidence 8888888888765
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00091 Score=62.07 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=27.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg 463 (644)
..++|+|+||||||||+..|++.+.+.. |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999999875432 4455443
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=61.30 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.01 Score=56.35 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=29.9
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
.++.++++||+- .++.+....+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999974 4666777777777766544556666676654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=61.90 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0041 Score=58.51 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch-----------HHhhcCEEEEEeC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS-----------TIRKSNQICVLDK 614 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~-----------~i~~aD~Iivl~~ 614 (644)
+++++++||+-- +|++-...+.. +.+ .+..+|+..++.. .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~-l~~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKD-LLD--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHH-HHH--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHH-HHH--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999864 65443332222 222 2677877778443 5677999988864
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0063 Score=63.75 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37999999999999999999997766544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=69.90 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=44.9
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
+.+|+++|..+|+++++|||| |.++- ..+++....+.+++.++|..+....+|+++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 76653 33444444589999999998876767776544
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=62.78 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
++..++|+|++||||||+++.|.. + |-..+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 456899999999999999999988 3 5566665
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0056 Score=62.51 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=25.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999998753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.41 E-value=1.6 Score=48.35 Aligned_cols=91 Identities=4% Similarity=-0.038 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 73 AKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSI 152 (644)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (644)
+.++.+.....+++.++..++..+.+.+...++..++..-. ..... ....++++.+++..+...+..+.......++
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (582)
T 3b5x_A 16 LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF--GNAES-NFLRILPFMILGLMFVRGLSGFASSYCLSWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555556655666655543210 00111 1112222223333445555566666666667
Q ss_pred HHHHHHHHHHHHHc
Q psy5743 153 TKKLRERLFGSIIS 166 (644)
Q Consensus 153 ~~~lr~~~~~~ll~ 166 (644)
..++..++-.++++
T Consensus 93 ~~~~~~~lr~~l~~ 106 (582)
T 3b5x_A 93 SGNVVMQMRRRLFN 106 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.015 Score=62.74 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..-+.|.||+|+|||||++.+....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999999999999977
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=61.84 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=63.77 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999998744
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=62.23 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.-+++..+.|+|++||||||+.+.|+..+ |-+.++.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 334567899999999999999999998755 4555554
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=61.68 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++.-+.|.||+|+|||||++.+...+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999876
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=61.29 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc----CCCCCc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL----YDPQNG 457 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~----~~p~~G 457 (644)
.=+++++|++|+|||||++.+.+- +.|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 347999999999999999999986 345555
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0025 Score=66.54 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------cCCCCCcEEEECC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR-----------LYDPQNGKILIDG 463 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g-----------~~~p~~G~I~idg 463 (644)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999999 4468889888876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=59.62 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=18.7
Q ss_pred CEEEEECCCCCcHHHHHHHH
Q psy5743 429 SMTSVIGSSGSGKSTLAMLL 448 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL 448 (644)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0012 Score=61.54 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998665
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=64.80 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=25.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.+++...++| +.|.||+|+|||||++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444445555 8899999999999999999854
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.017 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|+|+|++|+|||||++.|+|.--
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=60.88 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=61.27 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.21 E-value=2.1 Score=47.61 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.....+.. +.++.+.....+++.++..++..+.....-.++..++..-.. ......+ ..++++.++..++..+..+
T Consensus 20 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (598)
T 3qf4_B 20 NPTATLRR-LLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFV--PRRFDLL-PRYMLILGTIYALTSLLFW 95 (598)
T ss_dssp CHHHHHHH-HGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--TTCGGGH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43333333 334444444555555555565556666666666655532110 1111122 2233333444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q psy5743 144 LMNVSAQSITKKLRERLFGSIIS 166 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~ 166 (644)
.......++..++..++-.++++
T Consensus 96 ~~~~~~~~~~~~~~~~lr~~l~~ 118 (598)
T 3qf4_B 96 LQGKIMLTLSQDVVFRLRKELFE 118 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777666654
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.014 Score=62.45 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+-+++..-+.+.||.|||||+|++.+++...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3467778899999999999999999999764
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.015 Score=62.07 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+++..-+.+.||+|+|||+|++.+++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667799999999999999999998764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=71.24 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=31.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDG 463 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg 463 (644)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999988766544433 3444
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=60.37 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=60.99 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998765
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.032 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+.|.||+|+|||||++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988764
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=61.17 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++|..-+.+.||.|+|||+|++.+++....
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 555666999999999999999999997643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0024 Score=59.25 Aligned_cols=23 Identities=48% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998866
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=59.66 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=19.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999986653
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0095 Score=53.36 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.+.-+.|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3466799999999999999999987653
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.024 Score=60.12 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+++..-+.+.||.|+|||+|++.+++...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 356677799999999999999999999764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0026 Score=63.13 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998865
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.03 E-value=2.5 Score=46.83 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 79 KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRE 158 (644)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 158 (644)
.....+++.++..++..+.+.....++..++..-. ..... .....+++.+++..++..+-.+.......++..++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b60_A 22 PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF--GKTDR-SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 98 (582)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSST--TSTTH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555566666666655553221 01112 1222222223344455556666666777777777777
Q ss_pred HHHHHHHc
Q psy5743 159 RLFGSIIS 166 (644)
Q Consensus 159 ~~~~~ll~ 166 (644)
++..++++
T Consensus 99 ~lr~~l~~ 106 (582)
T 3b60_A 99 TMRRRLFG 106 (582)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777664
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0034 Score=58.17 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=24.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 12555554
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0026 Score=60.14 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=25.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999998866
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0023 Score=67.18 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|.||+|+|||||++.+....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0087 Score=60.91 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLL 448 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL 448 (644)
+++| .+-|.||+|||||||+--+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHH
Confidence 7899 9999999999999995443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.015 Score=60.55 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
++.++++||+- .++.+....+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 56899999974 4677777778877766544556777777664
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0064 Score=55.33 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0067 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++.-+|+++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999874
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0077 Score=64.96 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=28.5
Q ss_pred cceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCC
Q psy5743 419 NDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 419 ~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+.-.++.|+. +.|.||+|+|||||++.+.+...+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344444555654 999999999999999999998854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998655
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.02 Score=58.38 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998765
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0038 Score=58.52 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=59.53 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0037 Score=59.15 Aligned_cols=22 Identities=45% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.021 Score=65.93 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.++||+|+|||++++.+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999886
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0042 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0055 Score=58.19 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.024 Score=61.80 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998865
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.029 Score=60.06 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+-+++..-+.+.||.|+|||+|++.+++...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3467788899999999999999999998764
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0028 Score=64.31 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998755
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0072 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0082 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0047 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998765
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.005 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0053 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0047 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+...|+|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999998766
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0054 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0055 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.006 Score=56.03 Aligned_cols=25 Identities=40% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+.++|+|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0084 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.005 Score=59.55 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987663
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0052 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997766
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.019 Score=58.79 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCEEEeecccCCCC-HHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALD-AENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD-~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++++++||+-. +. .+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 33 55666677777665556678888887664
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.006 Score=57.82 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-.++|+|.+||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0093 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0065 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0053 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0064 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.042 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|.||+|+|||||++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 357889999999999999999998875
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0067 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0063 Score=56.96 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.=+++++|++|+|||||++.+.+-..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344899999999999999999998653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0089 Score=55.96 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.026 Score=70.50 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=33.3
Q ss_pred Ccccccee--EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 415 AVILNDLS--LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 415 ~~vL~~is--l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+.|+++. .-+++|+.+.++|++|||||||+..++-.-.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688887 5799999999999999999999999885443
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0094 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0069 Score=55.12 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998654
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0092 Score=57.76 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.5
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSM-TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~-vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+. +.+.|+.|+||||++--+....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5664 8889999999999955554443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0068 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0087 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999986
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0067 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.49 E-value=0.013 Score=60.11 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+..-+.|.||+|+|||||++.+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456779999999999999999998864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0061 Score=60.32 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998755
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0062 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0067 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-.+.|.|++||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.007 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998866
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.012 Score=54.53 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0072 Score=54.99 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0059 Score=61.27 Aligned_cols=23 Identities=43% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|||++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0077 Score=61.97 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998774
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0064 Score=60.87 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0065 Score=60.38 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0072 Score=60.12 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0074 Score=54.77 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0067 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.011 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.007 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998755
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0076 Score=55.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0076 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999988643
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=56.11 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..++..-+.+ .|..+.|+||||||||||+..|..-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466655554 68899999999999999999998654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0077 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0073 Score=56.53 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+--+++++|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.013 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.024 Score=57.57 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
++.++++||+-. ++.+....+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999743 455566667777766544556777777654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0093 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|+|+|++|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0079 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++++|++|+|||||++.+++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0092 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0078 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
...|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0097 Score=53.79 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.015 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.061 Score=54.71 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+..+.|.||+|+|||++++.+....+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 45778999999999999999999987653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0096 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0098 Score=59.64 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999976
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0091 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998853
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.018 Score=53.20 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..++..-+ --.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34454444 35688999999999999999998876
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0095 Score=54.62 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.014 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=57.21 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.016 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999987
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=60.38 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=61.29 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998774
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.014 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.-+|+|+|++|+|||||++.+.+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999987
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=59.88 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+..++|+||||||||||...|+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999988763
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0056 Score=65.78 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=33.6
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
+++.+ ..+-+|++++|+|+||+|||||++.|.+......|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 34444 67789999999999999999999999887654444443
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.076 Score=51.41 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=40.3
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC-----------chHHhhcCEEEEEe
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-----------LSTIRKSNQICVLD 613 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr-----------l~~i~~aD~Iivl~ 613 (644)
.+.+++++||+-=..| ...+.+.+.+ .++.||+-.++ ...+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 4455566655 48888888888 55688999999884
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.016 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999975
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=56.90 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998876
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=57.59 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+|..|.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999988774
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.019 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=26.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999998865
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.083 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+...+.|.||+|+||||+++.+...+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999987
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.041 Score=59.54 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=59.0
Q ss_pred ccccCCCCCCChhHHHHHHHHH--HHcc---------------CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy5743 533 TIVGERGIMLSGGQKQRIAIAR--ALIK---------------KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595 (644)
Q Consensus 533 T~ige~G~~LSGGQkQRiaLAR--All~---------------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~ 595 (644)
+........+||||+|-.-+|. |++. .=.+++|||| |-+|.+..+..++.++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 6666667789999999433322 2211 1257999999 999999999999999988 778888
Q ss_pred EccCchHHhhcCEEEEEe
Q psy5743 596 IAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 596 IaHrl~~i~~aD~Iivl~ 613 (644)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8877 5557889999885
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.021 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+++|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999874
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=60.00 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|--+|||+|++|+|||||++.|+|.-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999853
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+|+|+|++|+|||||++.|+|--
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=61.38 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=24.8
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
++..++..+ ...+|+|++||||||++.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 455666655 589999999999999999875
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.018 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0091 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999874
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=54.78 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.041 Score=61.22 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.+..+.|.|+.|+||||+++.+...+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999877543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.008 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-+|+|+|++|+|||||++.|+|--
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999865
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+|+|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.019 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=55.17 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.=+|+|+|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3479999999999999999999754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.0069 Score=57.63 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.4
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..|+.+.-.+--+|+++|++|+|||||++.+.+-.
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34444443334479999999999999999999743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.018 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998776
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=55.82 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.+|..++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=53.27 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+..+.|+||+|+|||||++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999988764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.016 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
=+++++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 37999999999999999999886543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=59.43 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+.|+||+|||||||.+.|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998774
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.099 Score=65.47 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=30.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG 463 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg 463 (644)
+++|+.+.|.||+|+|||||+.-++....... ..+++++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 89999999999999999999888876654432 2344444
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.017 Score=56.48 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999887753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.017 Score=57.53 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
.+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999977654444
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.58 E-value=0.02 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+-=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.053 Score=62.33 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++|..-+.+.||+|+|||||++.+++...
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667799999999999999999998774
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=55.84 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+|..+++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999988764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999985
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.018 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.=+|+|+|++|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.018 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
...+.|+||||||||||...|+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999998763
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.016 Score=56.71 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998774
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.019 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
=+|+++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.015 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.02 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..|.+.|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999887753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.014 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
=+|+++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998764
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.46 E-value=0.012 Score=58.39 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++|..|+|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998874
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-.++|+|++|+|||||++-|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999888753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.036 Score=64.85 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=27.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg 463 (644)
..+.|+||+|+|||++++.|...+....+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999998855433 344544
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=54.85 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.016 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.=+|+++|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447999999999999999999864
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.014 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=57.72 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=24.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
..+.|+|++||||||+.+.|...+ .|-..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEecc
Confidence 468999999999999999998743 25555543
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.028 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-+++++|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.03 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344799999999999999988874
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+--
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998743
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.019 Score=58.01 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.|+|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.036 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=58.09 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999988764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.15 Score=62.92 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++|+.+.|.||+|||||||+--++....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999877765543
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998743
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.021 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
++.=+|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.2 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.+.+.||.|+||||+++.+...+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 48999999999999999999876543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 644 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-93 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-89 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-80 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-73 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-51 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-46 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-43 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-38 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-37 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-31 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 9e-28 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-25 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-22 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-10 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 286 bits (734), Expect = 2e-93
Identities = 111/247 (44%), Positives = 159/247 (64%), Gaps = 5/247 (2%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+G ID +++ F Y +A IL D++L I+ G + +G SG GKSTL L+ R YD +
Sbjct: 14 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
G+ILIDG +IK+ LR+QIG V Q+ LFS T+ ENIL G T +++ AAK
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDEEVVEAAK 129
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
ANA+ F+++ G+DT VGERG+ LSGGQKQR++IAR + IL+LDEATSALD E+
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
E ++Q A++ L + +T L +AHRLSTI +++I V++ G IVE G++ LI +
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248
Query: 637 LMKYQTM 643
L Q +
Sbjct: 249 LYSIQNL 255
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 276 bits (707), Expect = 2e-89
Identities = 112/254 (44%), Positives = 168/254 (66%), Gaps = 4/254 (1%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
GK G+++F N+ F+YP R + L +++LKI +G +++G SGSGKST+A L+
Sbjct: 3 GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508
R YD G IL+DG D++E LR+Q+ VSQ LF+ T+ NI Y + ++
Sbjct: 62 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE--YSR 119
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
I AA+ A A F+ NG DTI+GE G++LSGGQ+QRIAIARAL++ S IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
TSALD E+E +Q+A+++L + +T L IAHRLSTI ++++I V++ G IVE G+++ L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 629 NPNSMFNKLMKYQT 642
+ ++ +L K Q
Sbjct: 240 Q-HGVYAQLHKMQF 252
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 269 bits (688), Expect = 1e-86
Identities = 92/246 (37%), Positives = 154/246 (62%), Gaps = 5/246 (2%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
L+G + F ++ F+YP+RPD ++L L+ ++ G +T+++G +GSGKST+A LL LY P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
G++L+DG + + + YL Q+ +V QEP +F ++ ENI YG+ T +I AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQ--KPTMEEITAAA 125
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++ A+ F+ G+DT V E G LSGGQ+Q +A+ARALI+K +L+LD+ATSALDA
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 576 NEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
++ V+ + + E ++VL I LS + +++ I L+ G I E G++ L++
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244
Query: 634 FNKLMK 639
+ +++
Sbjct: 245 YWAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 264 bits (675), Expect = 8e-85
Identities = 111/244 (45%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+I F NIRF Y VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+LIDG D+ DP +LR Q+G V Q+ L + +I +NI ++ +I+AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIYAAKLA 116
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E+
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Query: 639 KYQT 642
+ Q+
Sbjct: 237 QLQS 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 252 bits (644), Expect = 3e-80
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 5/242 (2%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ F+Y IL D+S + Q S+ + G SG GKST+ LL R Y P G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
IDG I + RSQIG VSQ+ + +GTI EN+ YG+ T D+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD--YTDEDLWQVLDLAF 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A FV + + +T VGERG+ +SGGQ+QR+AIARA ++ KIL+LDEAT++LD+E+E +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A++ L++G+T L IAHRLSTI +++I ++KG+I G + L+ + ++ K +
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236
Query: 640 YQ 641
Q
Sbjct: 237 EQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 236 bits (603), Expect = 1e-73
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 35/295 (11%)
Query: 351 GISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYP 410
GI + ++ F+ E E++E+ + K D NN+ FS+
Sbjct: 2 GIIMENVTAFWEE---------GFGELLEKVQQSNGDR--------KHSSDENNVSFSHL 44
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
+L +++L I+ G M ++ GS+GSGK++L ML+L + G I G
Sbjct: 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 97
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
++ SQ + GTI ENI++GV+ + K + F
Sbjct: 98 ------RVSFCSQFSWIMPGTIKENIIFGVS----YDEYRYKSVVKACQLQQDITKFAEQ 147
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLIE 589
+T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+
Sbjct: 148 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207
Query: 590 GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
KT + + ++ +RK+++I +L +G G+++ L +KLM Y T D
Sbjct: 208 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 174 bits (442), Expect = 5e-51
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ +Y + + L +++L I+ G S++G SGSGKST+ ++ L P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDI 511
+ ID + +LD L R +IG V Q+ L T EN+ +++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A E + + LSGGQ+QR+AIARAL I+L D+ T A
Sbjct: 122 RKRALECL------KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
LD++ + ++KL E GKTV+ + H ++ R +I L G++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 161 bits (408), Expect = 5e-46
Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
E+ N+ + + +N L+L I+ G ++G SG GK+T ++ L +P G+
Sbjct: 6 EVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
I D+ L P I V Q ++ T+YENI + + K +I +
Sbjct: 63 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 119
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + ++ LSGGQ+QR+A+ARA++ + +LL+DE S LDA+
Sbjct: 120 AAE-------LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 172
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+++ I+KL + T + + H ++I V+++G++++IGS + PNS+F
Sbjct: 173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 157 bits (399), Expect = 2e-44
Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ ++ Y +L +SL+ ++G + S+IGSSGSGKST + L P G
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 459 ILIDGVDIKELDP-------------MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS 504
I+++G +I + LR+++ V Q L+S T+ EN++
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 505 SVTKSDIIHAAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
++K D A + G + + LSGGQ+QR++IARAL + +L
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPDVL 171
Query: 564 LLDEATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
L DE TSALD E +++ + EGKT++ + H + R S+ + L +GKI E G
Sbjct: 172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 622 SYAHLIKNPNSMF 634
+ NP S
Sbjct: 232 DPEQVFGNPQSPR 244
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 156 bits (397), Expect = 2e-44
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I +NI + + LN++SL + +G + VIG+SG+GKSTL + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 459 ILIDGVDIKELDPMY---LRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHA 514
+L+DG ++ L R QIG + Q L S T++ N+ + + K ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE-LDNTPKDEVKRR 120
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
E + G LSGGQKQR+AIARAL K+LL DEATSALD
Sbjct: 121 VTELLS-------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
+ ++ + G T+L I H + +++ + + V+ G+++E + + + +P
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233
Query: 632 SMF 634
+
Sbjct: 234 TPL 236
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 152 bits (385), Expect = 6e-43
Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 24/228 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++ L LS ++++G + ++G +G+GKSTL + + G I G ++
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 69
Query: 474 LRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
L +SQ+ T F+ ++ + +D T++++++ A D
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGA----------LALD 116
Query: 533 TIVGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIE 585
+G LSGG+ QR+ +A +++ ++LLLDE ++LD + + +
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 176
Query: 586 KLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
L +G ++ +H L+ T+R +++ +L GK++ G ++ PN
Sbjct: 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 138 bits (350), Expect = 4e-38
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 15/238 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ ++ + V+ D++L I G +G SG GKSTL ++ L +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
I + + P +G V Q L+ + + K I +
Sbjct: 58 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ + + LSGGQ+QR+AI R L+ + + LLDE S LDA
Sbjct: 116 EVLQLAHLLD-------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 580 VQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
++ I +L G+T++ + H +++I VLD G++ ++G L P F
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 139 bits (351), Expect = 6e-38
Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 12/240 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ NI + L+ +S+ + G +T +IG +GSGKSTL ++ G++
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 460 LIDGVDIKELDPMYL-RSQIGSVSQEPTLFSG-TIYENILYG-----VNDSSSVTKSDII 512
+ DI +P L I Q P T+ EN+L G + +S+ I
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+E F I + + LSGGQ + + I RAL+ K++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 573 DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+ + + + +L +G T L I HRL + + + V+ G+I+ G IKN
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 138 bits (348), Expect = 1e-37
Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 17/242 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ + + + ++SL+++ G ++G SG GK+T ++ L +P G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 460 LIDGVDIKELDPMYLR----SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
I + + + I V Q L+ + + V + +I
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+E ++ + E LSGGQ+QR+A+ RA+++K ++ L+DE S LDA+
Sbjct: 121 REVAE---LLGLTELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 576 NEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
+++ ++KL G T + + H ++I V+++G + ++GS + P +
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
Query: 633 MF 634
F
Sbjct: 234 TF 235
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 133 bits (337), Expect = 3e-36
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y + + + LK+ G + ++IG++G+GK+T + L Q GKI
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 460 LIDGVDIKELDPMYLRSQIGSV--SQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
+ +G DI P ++ +++G + +F T+YEN++ G + K I +
Sbjct: 64 IFNGQDITN-KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--KEGIKRDLE 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ + + G LSGG++Q +AI RAL+ + K+L++DE + L
Sbjct: 121 W------IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
V I+K+ EG T+L + K ++ VL+ G+IV G + L+ N
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (333), Expect = 9e-36
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 20/250 (8%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G + ++R + IL +S +I+ G + +IG +G+GK+T ++ L P +G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
+ + G ++ E +P +R I + +E + E + + + + S+I +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-FYASSSSEIEEMVE 115
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A G + +R S G +++ IARAL+ ++ +LDE TS LD N
Sbjct: 116 RATE-------IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 168
Query: 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS-- 632
V+ +++ EG T+L +H + + ++I ++ G IVE G+ L + +
Sbjct: 169 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
Query: 633 ---MFNKLMK 639
+F +++K
Sbjct: 229 IEEVFEEVVK 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 128 bits (323), Expect = 1e-34
Identities = 38/206 (18%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y D +L +++ I+ G++ + G +G GK+TL + P G+I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVN-DSSSVTKSDIIHAAKE 517
+ +GV ++ +I + +E + ++ + + + V K++I+ A +
Sbjct: 59 IYNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
++ LS G +R+ +A L+ ++I +LD+ A+D +++
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLS 601
+ V +I ++++ G +++ LS
Sbjct: 162 HKVLKSILEILKEKGIVIISSREELS 187
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 127 bits (321), Expect = 4e-34
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ + + L++LSLK++SG ++G +G+GK+ L+ + P +G+I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG D+ +L P + I V Q +LF + +N+ +G+ ++ A++
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ + LSGG++QR+A+ARAL+ KILLLDE SALD +
Sbjct: 116 KIEHL-----------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 579 LVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ + L TVL I H + R +++I V+ GK++++G + + P
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 126 bits (317), Expect = 2e-33
Identities = 67/243 (27%), Positives = 122/243 (50%), Gaps = 16/243 (6%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ + + V L+++++ I++G ++G SG+GK+T ++ L P G+
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 459 ILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+ D + + + +IG V Q L+ T +ENI + + + ++K +I
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKR 120
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+E + N F LSG Q+QR+A+ARAL+K +LLLDE S LDA
Sbjct: 121 VEEVAKILDIHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 575 ENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
++ ++++ G T+L ++H + I ++++ VL KGK+V++G L NP
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233
Query: 632 SMF 634
S+
Sbjct: 234 SIQ 236
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 119 bits (299), Expect = 4e-31
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++ ++ ++G +G+GKS L+ + P G++ ++G DI L P R IG
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIG 73
Query: 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
V Q+ LF ++Y NI YG+ + V + + +E + + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRN---VERVERDRRVREMAEKLGIAHLLD-------RK 123
Query: 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTI 596
LSGG++QR+A+ARAL+ + ++LLLDE SA+D + + ++ + + +L +
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 597 AHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
H L ++++ V+ G+IVE G L N
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 112 bits (279), Expect = 9e-28
Identities = 66/321 (20%), Positives = 136/321 (42%), Gaps = 4/321 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL-- 123
+K+ K K ++ + + ++ I M +P + ID + + EK+ L
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 124 --SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
+ L + +V F R YL ++ I +R++L+ + + ++ ++ G++I
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVY 241
+R+ D + + + + + +S+MF + KL L +L I P V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+RK+TR LA ER+ I VKSF+ E E +F+ K + A K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
F + + V+ G + +ITVG L++F+ Y + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 362 SELNKGLGACHRLWEIMEREP 382
+ L + + R++++++ +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDY 322
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 105 bits (262), Expect = 1e-25
Identities = 62/317 (19%), Positives = 142/317 (44%), Gaps = 3/317 (0%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
++L+ K L A L+++++ + L ++D + + + + + L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 60
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + ++ ++ Y ++ + + +R RLFG ++ A+FDK TG L++RI+
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ + + +R + MMF S +L++I +++ P V+ V K
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
R I++N+Q+ + AE+ + + V F +++E F+ + + K A
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ L + + VLY +++T G ++ + + L+N ++
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 366 KGLGACHRLWEIMEREP 382
+G+ AC L+ I++ E
Sbjct: 301 RGMAACQTLFAILDSEQ 317
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 91.2 bits (225), Expect = 7e-22
Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 32/189 (16%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
+ G G GK+TL ++ + + V E I + ++ S
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
L G V + A
Sbjct: 65 TSKKLVG--------------------------------SYGVNVQYFEELAIPILERAY 92
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
A + K++++DE ++ V+ +I L
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 613 DKGKIVEIG 621
++E+
Sbjct: 153 PGAVLIELT 161
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 1e-10
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 11/173 (6%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
+ G G GK+TL + + + + + ++S S
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGERGIMLSGGQKQRI 550
E D+ + A D G V + + + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTV----LTIAHR 599
R + ++L + +E++ K V +T +R
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGK-----PLALVEEIRNRKDVKVFNVTKENR 173
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 541 MLSGGQKQRIAI----ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT-VLT 595
LSGG+K A+ A + S +LDE +ALD N + + I + +
Sbjct: 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV 391
Query: 596 IAHRLSTIRKSNQI 609
I+ + + KS+ +
Sbjct: 392 ISLKNTMFEKSDAL 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 100.0 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.79 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.44 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.32 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.17 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.94 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 97.84 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.58 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.58 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.55 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.38 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.35 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.33 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 97.27 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.24 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.23 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.22 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.12 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.11 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.09 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.08 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.08 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.07 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.05 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.99 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.96 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.89 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.87 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.86 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.85 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.82 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.81 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.8 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.8 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.72 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.58 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.54 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.52 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.51 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.43 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.37 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.33 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.32 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.28 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.26 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.25 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.21 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.17 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.15 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.15 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.14 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.13 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.13 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.07 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.06 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.05 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.03 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.01 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.01 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.0 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.97 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.97 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.96 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.89 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.88 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.87 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.87 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.85 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.84 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.83 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.83 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.82 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.81 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.73 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.71 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.7 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.68 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.66 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.54 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.5 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.45 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.39 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.36 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.33 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.32 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.3 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.29 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.2 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.15 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.1 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.1 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.02 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.01 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.97 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.89 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.88 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.84 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.81 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.8 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.8 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.79 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.78 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.77 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.75 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.75 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.68 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.63 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.6 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.56 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.56 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.45 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.42 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.42 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.42 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.4 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.4 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.35 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.34 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 94.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.25 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.21 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.05 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.01 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.91 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.91 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.88 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.86 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.82 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.77 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.77 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.77 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.52 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.49 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.31 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.29 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.28 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.21 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.08 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.05 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.05 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.0 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.99 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.91 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.83 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.7 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.66 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.66 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.39 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.3 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.15 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.15 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.06 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.34 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.18 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.82 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.71 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.38 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.35 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.34 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.71 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.4 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.33 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 89.26 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.22 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.66 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.63 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 88.16 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.06 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.68 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.67 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.36 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.09 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.98 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.82 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.46 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.98 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.81 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.01 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 84.97 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.51 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.4 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.74 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.67 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 80.21 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.07 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-77 Score=590.19 Aligned_cols=241 Identities=46% Similarity=0.762 Sum_probs=233.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+|+|+||||+|++ .++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCC-CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 4899999999986 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||||+|++|++||+|||+++.++ .++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||++
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTT---CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEEecccccCCccccccccccCcc---ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc
Confidence 999999999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|+|||||||||+||+.+++.|.+.|+++.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++++.|++||
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~ 236 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHH
T ss_pred ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987778999999
Q ss_pred HhhcC
Q psy5743 639 KYQTM 643 (644)
Q Consensus 639 ~~q~~ 643 (644)
+.|.+
T Consensus 237 ~~Q~d 241 (241)
T d2pmka1 237 QLQSD 241 (241)
T ss_dssp HHHCC
T ss_pred HHhcC
Confidence 98863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.3e-77 Score=596.03 Aligned_cols=244 Identities=45% Similarity=0.725 Sum_probs=235.9
Q ss_pred CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 394 ~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
...+|+|+|+||+|+|++ .++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 345678999999999986 3578999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
||++|+||+|+|++|++||+|||++|.|+ .++++++++++.+++++++.++|+||||.+|++|.+|||||||||+||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~---~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCcC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcH
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~ 633 (644)
|||+++|+|||||||||+||+++|+.|.+.|.++.+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++.
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~ 245 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGA 245 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSH
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 799
Q ss_pred HHHHHHhhc
Q psy5743 634 FNKLMKYQT 642 (644)
Q Consensus 634 y~~l~~~q~ 642 (644)
|++||+.|.
T Consensus 246 y~~l~~~Q~ 254 (255)
T d2hyda1 246 YEHLYSIQN 254 (255)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHcC
Confidence 999999885
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-75 Score=583.99 Aligned_cols=244 Identities=45% Similarity=0.737 Sum_probs=235.0
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
...|+|+|+||+|+|++ .+.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+|+++++.++|
T Consensus 9 ~~~g~I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCC-CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 35578999999999986 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|+||+|+|++|++|+++|+.++.++ ..++++++++++.+++++++..+|+||+|.+|++|.+|||||||||+|||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~--~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTE--EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTS--CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcc--cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999999999754 37899999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ ++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7999
Q ss_pred HHHHHhhc
Q psy5743 635 NKLMKYQT 642 (644)
Q Consensus 635 ~~l~~~q~ 642 (644)
++||+.|.
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 99999984
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-73 Score=571.33 Aligned_cols=241 Identities=38% Similarity=0.687 Sum_probs=230.4
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
.++.|+|+||+|+||+.++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 45789999999999876667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
++|+||+|+|++|++||+|||.+|.++ ..+++++.++++.++++++++.+|+|++|.++++|.+|||||||||+||||
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQ--KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSS--CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHhhhccccccccCcchhhhhhhhhcc--cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence 999999999999999999999999543 378899999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~ 633 (644)
|+++|+|+|||||||+||+.++..|.+.|.++.+ ++|+|+||||+++++.||+|+||++|+|+|+|||+||+++ ++.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSH
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcH
Confidence 9999999999999999999999999999988754 7899999999999999999999999999999999999997 699
Q ss_pred HHHHHH
Q psy5743 634 FNKLMK 639 (644)
Q Consensus 634 y~~l~~ 639 (644)
|++||+
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.1e-74 Score=573.21 Aligned_cols=239 Identities=41% Similarity=0.671 Sum_probs=230.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||||+|++ .+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999975 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
||+|+|++|++||+|||.++.+. ..++++++++++.+++.+++..+|+|++|.+||+|.+|||||||||+|||||+++
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS--CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEccccccCCcchhhheeccccc--ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998542 3789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+|||||||||+||+++++.|.+.|+++.+++|+|+||||+++++.||+|+||++|+|++.|+|+||+++ ++.|+++++
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~ 236 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHH
Confidence 9999999999999999999999999999899999999999999999999999999999999999999987 799999999
Q ss_pred hhcC
Q psy5743 640 YQTM 643 (644)
Q Consensus 640 ~q~~ 643 (644)
.|..
T Consensus 237 ~Q~~ 240 (242)
T d1mv5a_ 237 EQLT 240 (242)
T ss_dssp CCCC
T ss_pred HHhh
Confidence 9863
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-61 Score=487.46 Aligned_cols=218 Identities=30% Similarity=0.499 Sum_probs=199.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+|+|++|. .+|||+||||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 34666666542 35799999999999999999999999999999999999999999999999 7
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++||||++++|++||+|||.+|.+ .++.+++++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS----YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC----CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeccccccCceeecccccccc----ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999954 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHH-HHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSA-IEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
++|+|||||||||+||+.++..+.+. +....+++|+|+||||++.++.||+|++|++|+|++.|||+||++. ++.|.+
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~ 253 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSS 253 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred hCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHH
Confidence 99999999999999999999998876 4555678999999999999999999999999999999999999976 567766
Q ss_pred HH
Q psy5743 637 LM 638 (644)
Q Consensus 637 l~ 638 (644)
.+
T Consensus 254 ~~ 255 (281)
T d1r0wa_ 254 KL 255 (281)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.5e-56 Score=436.68 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=194.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|||++|++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.++++. |+.||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999953 489999999999999999999999999999999999999999999999999988865 78999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.||.. |++|||.|+.......+++++.++++..++.++..+.| ..||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh-----------hhCCHHHhcchhhhhhhhc
Confidence 99999999964 99999998764223346788999999888876654443 5699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
+|+|||||||||+||+.+...+.+.|.++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998864 37899999999998765 99999999999999999999998765444
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-56 Score=434.91 Aligned_cols=220 Identities=27% Similarity=0.465 Sum_probs=165.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+++.+.++. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 78999999996 35799999999999999999999999999999999999999999999999999988764 67899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||+|++.+|.. |++||+.++..-.. +..++++.++++..++.++..+.| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999998854211 112345677777777766544443 5799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCCc
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~~ 632 (644)
|+.+|++|+||||||+||+.+.+.|.+.|.++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999998864 48999999999998866 999999999999999999999987766
Q ss_pred HHH
Q psy5743 633 MFN 635 (644)
Q Consensus 633 ~y~ 635 (644)
.|-
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-55 Score=431.57 Aligned_cols=220 Identities=30% Similarity=0.493 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++||+|+..+++. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999996 35799999999999999999999999999999999999999999999999999998865 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHH----HHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i----~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|. -|++||+.++... ...+.+++ .++++..++.++ .......||||||||++||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHH
Confidence 99999999996 6999999998643 23565554 445555555443 3445578999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||..+|+|||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||||++|++|+|++.|+++|+.++|
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988743 899999999999885 49999999999999999999999887
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|-
T Consensus 229 ~~~~~ 233 (239)
T d1v43a3 229 NSVFV 233 (239)
T ss_dssp SBHHH
T ss_pred CCHHH
Confidence 66664
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.8e-56 Score=434.65 Aligned_cols=223 Identities=30% Similarity=0.446 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr 475 (644)
.|+++||+++|++ .+..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|++||+|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 4899999999974 3467899999999999999999999999999999999999999999999999998766 34457
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++||||+|++.||.. |++|||.++-.. ...+.+ ++.++++.+++.++..+.| ..||||||||+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRv 149 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHh-hcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHH
Confidence 889999999999975 999999998543 234443 4667777777766544444 46999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||..+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||||++|++|+|++.|+++|+.
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988743 88999999999987 559999999999999999999999
Q ss_pred cCCCcHH
Q psy5743 628 KNPNSMF 634 (644)
Q Consensus 628 ~~~~~~y 634 (644)
.+|...|
T Consensus 230 ~~P~~~~ 236 (242)
T d1oxxk2 230 DNPVSIQ 236 (242)
T ss_dssp HSCSSHH
T ss_pred hCCCCHH
Confidence 8766555
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-55 Score=432.99 Aligned_cols=224 Identities=31% Similarity=0.474 Sum_probs=194.2
Q ss_pred EEEEEEEEEcCCCCCC-ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++||+++|+.+..+ .+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|+|+..++.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 7899999999754322 5799999999999999999999999999999999999999999999999999998765 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||||+|++.+|.. |++|||.++-... ...-++++.++++.+++.++..+. ...||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-----------~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-----------BSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 789999999999975 9999998753110 111246678888888886654333 3479999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||..+|++||||||||+||+.+...|++.|.++.+ +.|+|+|||+++.+.. ||||++|++|+|+|.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988743 7899999999999865 99999999999999999999998
Q ss_pred CCCcHH
Q psy5743 629 NPNSMF 634 (644)
Q Consensus 629 ~~~~~y 634 (644)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 765554
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.6e-55 Score=433.02 Aligned_cols=222 Identities=24% Similarity=0.440 Sum_probs=194.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l---- 474 (644)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999996 3579999999999999999999999999999999999999999999999999988776553
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
|++||||+|+|.||.. |++||+.++..- ...+.+ ++.++++..++.++..+.| ..||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~-~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQR 147 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHH
Confidence 6789999999999975 999999987432 123333 4677788888765544333 5799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||..+|+|||||||||+||+.+...|.+.|.++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 8999999999998855 999999999999999999999
Q ss_pred hcCCCcHHH
Q psy5743 627 IKNPNSMFN 635 (644)
Q Consensus 627 l~~~~~~y~ 635 (644)
++++...|-
T Consensus 228 ~~~P~~~~~ 236 (240)
T d1g2912 228 YDKPANTFV 236 (240)
T ss_dssp HHSCSBHHH
T ss_pred HhCCCCHHH
Confidence 987666663
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-55 Score=428.21 Aligned_cols=214 Identities=31% Similarity=0.453 Sum_probs=178.9
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----
Q psy5743 400 IDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l---- 474 (644)
|+++||+++|+.... ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+|+..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975321 247999999999999999999999999999999999999999999999999999998876
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCC--CCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVND--SSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~--~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
|++||||+|++.||.. |++||+.++... ....+.++ +.+.++..++.+-. .+ ....+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~----~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------AN----HKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG------TT----CCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhh------hc----CChhhCCHHHH
Confidence 3579999999999864 999999985321 01134333 33334444432211 11 22357999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
||++|||||..+|+|||||||||+||+.+...|++.|.++.+ ++|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999998743 7899999999999999999999999999999874
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4e-53 Score=422.72 Aligned_cols=227 Identities=32% Similarity=0.450 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP------- 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~------- 471 (644)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++...++
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 5899999999953 579999999999999999999999999999999999999999999999999976543
Q ss_pred ------HHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 472 ------MYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 472 ------~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
..+|++||||+|+|.+|. -|++||+.++.-.....+. +++.++++.+++.+...+ . ...
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~----~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG------K----YPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT------S----CGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhc------c----Ccc
Confidence 457889999999999997 5999999876211111333 345556666666543321 1 124
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
+||||||||++|||||..+|++||||||||+||+.+...|.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 699999999999999999999999999999999999999999998865 47899999999999865 9999999999999
Q ss_pred EecChhHHhcCCCcHHH-HHH
Q psy5743 619 EIGSYAHLIKNPNSMFN-KLM 638 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~-~l~ 638 (644)
+.|+++|+++++...|- +++
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHH
T ss_pred EEcCHHHHHhCCCCHHHHHHH
Confidence 99999999987666554 444
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.6e-51 Score=405.05 Aligned_cols=220 Identities=27% Similarity=0.433 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-c
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-Q 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~ 477 (644)
-|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 4899999999963 57999999999999999999999999999999999999999999999999999998887755 4
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|+||++.+|.. |++||+.++.... .+.++..+.++.+- +....+.+ .......+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~--~~~~~~~~~~~~~~--~~~~~l~~----~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIF--SLFPRLKE----RLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHH--HHCHHHHT----TTTSBSSSSCHHHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhc--CCHHHHHHHHHHHH--HHhhChHH----HHhCchhhCCHHHHHHHHHHHHH
Confidence 9999999999985 9999999875431 23333333333221 01112222 23344567999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
..+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||||++|++|+|++.|+++|+.++
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999998874 478999999999887 55999999999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.8e-51 Score=399.46 Aligned_cols=217 Identities=27% Similarity=0.483 Sum_probs=183.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+++ ++.-+|.+ ..+ ||||+++ ||+++|+||||||||||+++|+|+++|++|+|.+||+|+.++++. |++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 445 45666743 123 8999995 689999999999999999999999999999999999999998865 78999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||||++.||. -||+|||.|+-.. .+.+ ++.++++..++.++..+ ....||||||||++|||
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~---~~~~~~~~~v~~~l~~~gl~~~~~~-----------~~~~LSGG~kQRvaiAr 139 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRN---VERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRVALAR 139 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTT---SCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHHHHHH
T ss_pred eeccchhhcccchhhHhhhhhhcc---cCHHHHHHHHHHHHHhcCcHhhhhC-----------ChhhCCHHHHHHHHHHH
Confidence 9999999997 5999999998532 3443 45555666665554443 34679999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
||+.+|+||+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++|++++++
T Consensus 140 al~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~ 219 (240)
T d2onka1 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred HHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence 99999999999999999999999999999988743 7899999999998755 99999999999999999999998766
Q ss_pred cHHHHHHH
Q psy5743 632 SMFNKLMK 639 (644)
Q Consensus 632 ~~y~~l~~ 639 (644)
...++++.
T Consensus 220 ~~v~~fl~ 227 (240)
T d2onka1 220 GEVAEFLS 227 (240)
T ss_dssp SSHHHHGG
T ss_pred HHHHHHhC
Confidence 66666553
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-50 Score=403.84 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=182.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc-e
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ-I 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~-i 478 (644)
|+++||+.+|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+...++.+.++. |
T Consensus 5 L~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 5 LRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 899999999963 579999999999999999999999999999999999999999999999999999999887665 9
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC------------CCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDS------------SSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~------------~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
++|||+|.+|. -|++|||.++.... ...++++ +.++++..+ ++........+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGG
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcC-----------cchhccCchhh
Confidence 99999999886 59999999874210 0012222 222233333 22222334557
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
||||||||++|||||..+|++|||||||++||+.+.+.|.+.|+++. +++|+|+|||+++.+ +-||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998874 579999999999987 5599999999999999
Q ss_pred ecChhHHhc
Q psy5743 620 IGSYAHLIK 628 (644)
Q Consensus 620 ~Gt~~eLl~ 628 (644)
+|+++|+.+
T Consensus 231 ~g~~~e~~~ 239 (254)
T d1g6ha_ 231 EGRGEEEIK 239 (254)
T ss_dssp EEESHHHHH
T ss_pred EecHHHHhh
Confidence 999999764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-50 Score=398.28 Aligned_cols=216 Identities=25% Similarity=0.411 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|+|+++|++.+|. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+ .+..+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 5799999999996 3579999999999999999999999999999999999999999999999999987 46788999
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA----AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++||||++.+|.. |++||+.+...- ...+.+++.+. ++..++ +....+....||||||||++|
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lSgG~~qrv~i 144 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGF-YASSSSEIEEMVERATEIAGL-----------GEKIKDRVSTYSKGMVRKLLI 144 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCC-----------GGGGGSBGGGCCHHHHHHHHH
T ss_pred EeEeeeccccCCCccHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCCC-----------HHHHhhhhhhCCHHHHHHHHH
Confidence 9999999998875 999999765321 11345554444 333443 333344556799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|+||||||||++||+.+.+.|.+.|+++. +++|+|++||+++.+.. ||||++|++|+|++.|+++|+.++
T Consensus 145 A~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 145 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999999998864 57999999999999875 999999999999999999999753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-46 Score=370.21 Aligned_cols=209 Identities=22% Similarity=0.365 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++| +|+||||+|++||++||+||||||||||+++|.|++ |++|+|.++|+|+...+...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899997554 599999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|+.. .|..++.+|+.++..+ ....+.+.++++..++.++ ++....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~ 142 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHD--KTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQ 142 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSC--TTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred eeeccccCCccccHHHHhhhccch--hhHHHHHHHHHHhcCCHhH-----------hCcChhhcCHHHHHHHHHHHHHHh
Confidence 9999876 5788999999998764 2446667777777766544 344556799999999999999997
Q ss_pred -------CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 -------KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 -------~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+|+|||||||+||+.+.+.+.+.|+++ ..++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++.+
T Consensus 143 ~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred hCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 77999999999999999999999999886 4688999999999875 67999999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-44 Score=347.40 Aligned_cols=194 Identities=21% Similarity=0.366 Sum_probs=163.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|+||+|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 369999999999999999999999999999999999999999999999999864 67899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|+||++.++.. |++||+.+...- ....+++++.++++..++.+ ++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccccc----CcCCCcHHHHHHHHHHH
Confidence 999999998864 899998743210 01367889988888777543 22333 36999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+++|+++||||||++||+++++.+.+.|.+..+++++++|+|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999999887666555566552 3567999998853
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-33 Score=288.23 Aligned_cols=317 Identities=20% Similarity=0.314 Sum_probs=294.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++++++++|+.++.++++.++.+++..+.|++++.++|.+....+. ..+..+.++++++.++..++.+++.+
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR---SVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH---HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 457899999999999999999999999999999999999999987655432 33444455666677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.+.++..++|.++++|++++|+++|+++++|++++|+++|++.+++.+...+...+..++.+++.++++++++|.+
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++.+|+..++.....++.++..++..+..++.++.+.|.++|+++||.+++|+.+.+++.+..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
.........++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+++.+..++++.++.+|+.|+++.|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998775
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.4e-33 Score=287.69 Aligned_cols=318 Identities=20% Similarity=0.331 Sum_probs=288.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKE----MKEKMTSLSLLLMLVFVVGACCNFGR 141 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (644)
+|+++++++++|+.++.+++++++.+++.++.|++++.++|.+....... ....+..+++.+++..++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999987643211 11122223334445566677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
.+...+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+...+.+++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
.++++.++..+++.++...+.++.++..++..+..++..+.+.|.++|+++||.||+|+.+.++|.+..++..+...+..
T Consensus 162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 241 (323)
T d2hyda2 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (323)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+..........++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+.+.+++++.++.+|+.|+++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q psy5743 382 PL 383 (644)
Q Consensus 382 ~~ 383 (644)
||
T Consensus 322 ~e 323 (323)
T d2hyda2 322 YD 323 (323)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.79 E-value=2.8e-21 Score=181.52 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=114.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+++|+||+|||||||++.++|+++|..|.+.+++.+....+...........++...++..+..++...++.. .+.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG---VNVQ 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE---ECHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh---cCcc
Confidence 6899999999999999999999999999999999877665544433344455555555555554444433211 1111
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI- 588 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~- 588 (644)
. ..+|+|++||.++|+++.++|+++++|||+...+. ...+.+.+.+..
T Consensus 79 ~-----------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 79 Y-----------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMH 127 (178)
T ss_dssp H-----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHT
T ss_pred h-----------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhc
Confidence 1 24789999999999999999999999998655432 233444444433
Q ss_pred -CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 589 -EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 589 -~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
.+.|+|+++|+.+....+|++..+++|++++.+.
T Consensus 128 ~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 128 DPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred cCCCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 2689999999999889999999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=2.3e-13 Score=144.25 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCC-ceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEKLIEG-KTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~-~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..||||||.+++||=.+ +.++|+++||||+++||+.+...+.+.|.+.... .-+|+|||++.++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998776433 5678999999999999999999999999887543 4599999999999999998865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=5.5e-12 Score=127.79 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE--Ee
Q psy5743 540 IMLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV--LD 613 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iiv--l~ 613 (644)
..+|+|||+.+.++-.+ ..+|+++++|||-++||+...+.+.+.|++..++.=+|++||++.++..+|+++. |+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 35899999998776653 3567999999999999999999999999998888899999999999999999965 67
Q ss_pred CC
Q psy5743 614 KG 615 (644)
Q Consensus 614 ~G 615 (644)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 77
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=1.3e-07 Score=86.48 Aligned_cols=165 Identities=11% Similarity=-0.039 Sum_probs=89.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC---CCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND---SSS 505 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~---~~~ 505 (644)
+.|.|+||+|||||||++.+.+.+....+.+.+.+.+........+....+.+.|+...+.....++.....+. ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 35899999999999999999999988877776665554333322222223334444333322222222222110 001
Q ss_pred CCHHHHHHHHHHHhhccchh-hhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHH
Q psy5743 506 VTKSDIIHAAKEANAYGFVI-DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~-~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l 584 (644)
.+.+++...... . .+.+. ....+.+..+.+.....+......+.+.|.++..++++++...+..-+.. ..+.+.+
T Consensus 82 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (189)
T d2i3ba1 82 VDLTSFEQLALP-V-LRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEI 157 (189)
T ss_dssp ECHHHHHTTTTT-T-TCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHH
T ss_pred ccHHHHHHHHHH-H-HHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch--HHHHHHH
Confidence 223333222111 1 11111 12446777777777777888888888888888888776654443332222 2233344
Q ss_pred HHHcCCceEEEEcc
Q psy5743 585 EKLIEGKTVLTIAH 598 (644)
Q Consensus 585 ~~~~~~~TvI~IaH 598 (644)
.+ .++.+++.+|.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred hC-CCCCeEEEECh
Confidence 33 34556666553
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.84 E-value=0.015 Score=55.89 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=121.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVS 148 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (644)
+++.+.++-++.-..++++++..++..+.+.+...++..+++.... ......+ ..+++..++..++..+-.+.....
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~l-~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFG--KTDRSVL-LWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTT--STTHHHH-HHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHH-HHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3444445555556667777777777777888888888877654321 2334433 334444445556666777788888
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELIN-----RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 149 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~s-----r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
..+...++..++-.++.+. ..+.+.+..-+ .++...+.++. +...+...+...+..++.++..+.+...+
T Consensus 80 ~~~~~~~~~~~l~~~~~~~----ll~~~~~~~~~~~~g~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGH----MMGMPVAFFDKQSTGTLLSRITYDSEQ-VASSSSGALITVVREGASIIGLFIMMFYY 154 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHTCCSTHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhHHHHh----hcccchhhccccccccccccccccccc-cccccccccchhhhhhhhhhhHHHHHHhh
Confidence 8888888888888877653 33445554433 23332223332 22333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERI-SNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
.+...+++++..++.........+..++..+...+..+...+.+ +.+.-++.......+ +.+.+..++..+...+...
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e-~~~~~~~~~~~~~~~~~~~ 233 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ-EVETKRFDKVSNKMRLQGM 233 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhcc-chhhhhhhhhhhhhhHHHH
Confidence 44334444444455555555555555555444444444433333 334444444333332 3333444444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy5743 303 AKGVFFGFTGLSG 315 (644)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (644)
.............
T Consensus 234 ~~~~~~~~~~~~~ 246 (319)
T d3b60a2 234 KMVSASSISDPII 246 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhcccch
Confidence 3344444443333
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.58 E-value=8.3e-05 Score=65.17 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=24.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.|.|+|++||||||+++.|.... .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 478899999999999999876533 25555554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=9.9e-06 Score=74.19 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
|+.+.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999988753
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.55 E-value=0.00036 Score=65.64 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=32.7
Q ss_pred cCCCEEEeecccCCCCHHHHH----HHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 558 KKSKILLLDEATSALDAENEY----LVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~----~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
.+..++|+||..++=|++.-. .+.+.|.+. +.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~--~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHER--RAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH--TCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhc--CcceEEeeechhhhh
Confidence 355699999999999997443 344444433 778999999877654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.46 E-value=2e-05 Score=70.93 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.|+.|+|+|++||||||+++.|...+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58899999999999999999999876321 345555
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.38 E-value=4.3e-05 Score=71.87 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
+|++++++|+||+|||||+|.|.+-..-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999998776667765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0009 Score=64.57 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=24.0
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
+++.+ +.||+.+.|+|++|+|||||+--|+
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34555 3469999999999999999986654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=3e-05 Score=69.37 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999876544
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.27 E-value=0.085 Score=50.40 Aligned_cols=232 Identities=10% Similarity=0.025 Sum_probs=107.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 74 KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKE-MKEKMTS---LSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
.++-++.-..++..++..++..+.+.+...++..+++.-... ....... +...+.+..++..+...+-.+......
T Consensus 6 ~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (323)
T d2hyda2 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (323)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777778777666421111 0011111 122222223333444555566677777
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADT-SLVSQCVT---QNISDGLRSTVMVSAGVSMMFIISSKLAL 225 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~-~~i~~~~~---~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 225 (644)
.++..+++.++-.++.+ ...+.+.+..-++=+.|. +.+.+-.. ..+...+...+..++.+++.+.+.+.+.+
T Consensus 86 ~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (323)
T d2hyda2 86 QWTSNKILYDIRKKLYN----HLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhhHHHHHHHhh----hhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 77888888888777764 233445554433322222 11211111 11111122233333333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 226 ISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAE-ERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 226 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
...++..+..++.........+..++..+...+..+... ...+.++-++.-..-..+ +.+.+..++..+...+.....
T Consensus 162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIE-DNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhh-ccchhhhhcccccccchhhHH
Confidence 333444444445555555555555554444444444443 333455555555444333 233333444444444433333
Q ss_pred HHHHHH
Q psy5743 305 GVFFGF 310 (644)
Q Consensus 305 ~~~~~~ 310 (644)
......
T Consensus 241 ~~~~~~ 246 (323)
T d2hyda2 241 TRWNAY 246 (323)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 333333
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0011 Score=63.59 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=24.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++...+.+.||+|||||++++.++..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34556689999999999999999999874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.23 E-value=0.00078 Score=65.22 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=26.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
|+++.-=+.||+.+.|.|++|+||||++.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444443478999999999999999999877764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.22 E-value=6.2e-05 Score=67.65 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|-+|.|+|+|||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=7.5e-05 Score=69.62 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC--------------CCCcEEEECCccCCCCChHHHhcce
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD--------------PQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~--------------p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|..+.|+||||||||||.+.|+..++ |-.|+ +||+|..-++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHh
Confidence 489999999999999999999987653 22344 378887777777776653
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0015 Score=61.70 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHH-HHHHc-C-CceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSA-IEKLI-E-GKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~-~-~~TvI~IaHrl~~ 602 (644)
+..++|+||..++=|++.-..+..+ ++.+. + +..+|+.||-...
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 4569999999999998755555444 44442 2 4567777776554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.13 E-value=0.00048 Score=66.68 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=26.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+++..-+.+.||+|+|||+|++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 355667799999999999999999999884
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=9.5e-05 Score=67.29 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.+.+.|+||||||||||++.|+..++ |-.|++ ||+|.-=++.++..+.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~--~G~dY~Fvs~~~F~~~ 63 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE--NGKNYYFVSHDQMMQD 63 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC--BTTTBEECCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccc--cCccceeeehhhhhhh
Confidence 46799999999999999999986542 233443 6777665676666553
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.00066 Score=64.89 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.-+.+.||+|||||+|++.+.+.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCChhHHHHHHHHHcC
Confidence 3478999999999999999998763
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=4.8e-05 Score=71.76 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+|++++++|+||.|||||+|.|.|-..-..|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 68999999999999999999999988777777763
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00017 Score=71.20 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=49.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH----HhcCCCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN----ILYGVNDSSS 505 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN----I~~g~~~~~~ 505 (644)
+|||.|+|||||||+.+.|..++.-..+. ..+..|++|.+......++. -.+|.|+ .
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pe--s 142 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLKERGLMKKKGFPE--S 142 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGG--G
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCchHHHHhcCCccCCchH--h
Confidence 58999999999999999998877421110 15788999999887665442 2344453 3
Q ss_pred CCHHHHHHHHHHHh
Q psy5743 506 VTKSDIIHAAKEAN 519 (644)
Q Consensus 506 ~~~~~i~~a~~~a~ 519 (644)
.|-+.+.+.+....
T Consensus 143 ~D~~~L~~~L~~lk 156 (308)
T d1sq5a_ 143 YDMHRLVKFVSDLK 156 (308)
T ss_dssp BCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHH
Confidence 67777777666553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.08 E-value=0.00012 Score=65.45 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=25.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
|+|-.|+|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999999988764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.0014 Score=58.86 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=54.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS 504 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~ 504 (644)
-++-+.+.++|++||||||+++-++... |-+.++..+ ++
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i~~D~--------~~----------------------------- 49 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDT--------LG----------------------------- 49 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEEEHHH--------HC-----------------------------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CCEEEchHH--------HH-----------------------------
Confidence 3567899999999999999999886432 344443321 11
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH-HHHHHHHccCCCEEEee
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR-IAIARALIKKSKILLLD 566 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR-iaLARAll~~p~IliLD 566 (644)
+.+++.+.++. .|..|.+..+- ..+++-.||++ +.+||-.=-+..++.||
T Consensus 50 --~~~~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 50 --SWQRCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp --SHHHHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred --HHHHHHHHHHH--------HHHCCCCceee--CcCCCHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 12333333322 34556665553 56788999877 67777754444455553
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.0001 Score=67.55 Aligned_cols=45 Identities=33% Similarity=0.511 Sum_probs=34.5
Q ss_pred EEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcc
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|.|+|||||||+||++.|+..++ |..|++ +|+|..-++.+.+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~ 61 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHH
Confidence 78999999999999999976653 345554 7877777777776554
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.05 E-value=0.0013 Score=61.94 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++|..+.|.|++|||||||+.-++--.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987665543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00012 Score=65.92 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999877
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.96 E-value=0.00032 Score=69.89 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=31.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.|..+.|+|++||||||+++.|+++.+|..=-|.|
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4556779999999999999999999999887666666
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.96 E-value=0.00013 Score=65.25 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
+.++|+|++|||||||++-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999998887654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.94 E-value=0.0002 Score=63.94 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+.|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.89 E-value=0.00019 Score=65.54 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999876653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00097 Score=58.64 Aligned_cols=76 Identities=9% Similarity=0.113 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHccCCCEEEee-cccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLD-EATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLD-EaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
...+...+..+...++++++++++ ++++.--.+....+.+.+.+...++.+|+|....+........--.++-.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~ 140 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALI 140 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEE
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHHHHhCCCcEE
Confidence 345666777788889999887754 2332221122233344555555578888999888876654444444433443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.86 E-value=0.00021 Score=63.61 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=26.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.+.|+||+||||||+++.|...++ +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999999874 4555555
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00014 Score=66.44 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|.+|.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00022 Score=63.58 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999999866
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00024 Score=62.46 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.|.|+||+||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.81 E-value=0.00022 Score=64.35 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
.+.|+|.|++||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999998877554433
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.80 E-value=0.0018 Score=61.60 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..|.+.||+|||||++++.++...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 468999999999999999999765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.72 E-value=0.00014 Score=67.92 Aligned_cols=42 Identities=36% Similarity=0.350 Sum_probs=32.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIK 467 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~ 467 (644)
++|.+|.+.|.||||||||.+.|..-+.. ..-.+.+||.+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 58899999999999999999998754422 1235778885544
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.72 E-value=0.00029 Score=62.62 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.00042 Score=62.76 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=28.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccC------------CCCCcEEEECCccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY------------DPQNGKILIDGVDIK 467 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~------------~p~~G~I~idg~~i~ 467 (644)
+|||+|++|+|||||++.|+|-- .+..|.+.++|.++.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 59 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceee
Confidence 68999999999999999999753 233456666665443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.0012 Score=62.81 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+.+++++||+=. |..+....+.+.+.+..++...|++|++++-
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 456999999854 7777777777777665555567899998763
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00047 Score=64.10 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=31.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
.|||.|++||||||+.+.|...+.-... + .-...+.++++|.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~-------~-------~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV-------D-------YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS-------C-------GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcc-------c-------cCCCceEEEecccccc
Confidence 5899999999999999988776532100 0 1122577888887743
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.54 E-value=0.00061 Score=62.07 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=25.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|+|-.+.|+||.||||||+.+.|+.-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999999766
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.52 E-value=0.00047 Score=63.09 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|||+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.51 E-value=0.00052 Score=62.77 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
+...|+|+||+||||||+.+.|+.-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 45689999999999999999999877 555554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.001 Score=68.30 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
.|||+|++|+|||||+|.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999997543333
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=8.4e-05 Score=68.08 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.9
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++.++++.+| ++.|+||+||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 45666666665 9999999999999999999644
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00087 Score=59.81 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999843
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.00063 Score=62.23 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=31.0
Q ss_pred EEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhc
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
|.|+||||||||||++.|+..++ |..|+. +|.|..-++.+.+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~ 59 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGKDYYFVTREMMQR 59 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCc--cCceeEEeehhHHHH
Confidence 78999999999999999876542 234543 666666666655533
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.00094 Score=61.09 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~ 506 (644)
+-..+.|+||+||||||+++.|+.-| |-++|+.- +-+|+. +.+...-....+++-..-+.. .
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~---~~~~~~~~~~~i~~~~~~~~~----~ 68 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAE---QGRAGSQYGELIKNCIKEGQI----V 68 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHH---HHSTTCSCHHHHHHHHHTTCC----C
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEehh-------HHHHHH---hhhcccHHHHHHHHhhhcccc----c
Confidence 34569999999999999999999988 55666531 223332 223333333344443333321 3
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
.+..+.......-.. ....+-+..|-++ .-....|...+.+.+.....+++||=|
T Consensus 69 ~~~~~~~~~~~~~~~----~~~~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 69 PQEITLALLRNAISD----NVKANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp CHHHHHHHHHHHHHH----HHHTTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred cchhHHHHHHHHHHh----hhccCCCceeeec---cchhHHHHHHHHHhccccceeeccCCC
Confidence 444444433332211 1111111222111 112356888888877666666667643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.26 E-value=0.00083 Score=60.50 Aligned_cols=22 Identities=36% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.|+|||++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.25 E-value=0.00092 Score=59.27 Aligned_cols=30 Identities=40% Similarity=0.468 Sum_probs=25.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.|+|++||||||+.+.|+..+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEec
Confidence 48899999999999999998887 5556654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.0011 Score=59.65 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.17 E-value=0.0011 Score=59.28 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.+.++|++||||||+.+.|+..+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh----CCCEEeh
Confidence 457899999999999999998766 4445554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.15 E-value=0.0012 Score=57.63 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|.|+|++|||||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.15 E-value=0.031 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+...++|+|..|.|||||++.+..-.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999987543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.00079 Score=60.92 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.13 E-value=0.0012 Score=58.03 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999988764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.13 E-value=0.0043 Score=63.44 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=27.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
.++-.+.|+||+||||||.+..++...+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 467889999999999999999999977543333
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.08 E-value=0.00098 Score=60.92 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=64.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS 504 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~ 504 (644)
++++.++.|.||.||||||+.+.|..-| |-+.++--+ -+|+.+ ...+ ....++.+.+.-|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~~---- 65 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKGQ---- 65 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTTC----
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccH-------HHHHHH---HHhH-hhhhhhHHHHhhcc----
Confidence 4678899999999999999999999877 555555311 122211 1111 11234444444442
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
..+++-+.......- ...+...+-.|=+ +...-..|--.+.+.+-....++++|.+
T Consensus 66 ~~~~~~~~~~~~~~l-----~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 66 LVPLETVLDMLRDAM-----VAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp CCCHHHHHHHHHHHH-----HTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred CCchheeeeehhhhh-----hhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 256666655554432 1111112112222 2345566777777776665555566654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.07 E-value=0.0038 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+...+++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999987666665553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.0017 Score=62.14 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+..+.|+||+|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 57889999999999999999887654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0018 Score=59.34 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++|+.+.|.||+|||||||+.-++.-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988776544
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0013 Score=60.34 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.03 E-value=0.0016 Score=61.21 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.|+|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998755
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.00097 Score=62.83 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0015 Score=56.95 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999843
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0015 Score=58.39 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999973
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.00 E-value=0.0015 Score=60.76 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|||-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998873
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.97 E-value=0.001 Score=59.86 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~ 451 (644)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.97 E-value=0.0013 Score=60.04 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.-+|+|-|..||||||+++.|...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999877
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0015 Score=59.46 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
.+||+|++||||||+++.|--
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0091 Score=55.41 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
.+++++||.= .+.......+...|.+..+....++++++.+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 4699999974 56677778888888776555566667766554
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.89 E-value=0.0018 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.88 E-value=0.0017 Score=62.38 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.|+|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999999964
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0029 Score=55.90 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhc-----cCCCCCcE
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLR-----LYDPQNGK 458 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~ 458 (644)
-+|+|+|++|+|||||++-+.+ .|.|+-|.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~ 39 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 39 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceec
Confidence 3799999999999999998764 34565554
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0019 Score=58.67 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=42.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+|.|+||+||||||.++.|+.-| |-..|+- -+-+|.. +.+...-+...+.+.+.-|.. ..++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~---~~~~~~~~~~~~~~~~~~~~~----v~d~ 64 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDE---RKNPDSQYGELIEKYIKEGKI----VPVE 64 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHH---HHCTTSTTHHHHHHHHHTTCC----CCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcH-------HHHHHHH---HHhhhhhHHHHHHHHHhcCCc----cccc
Confidence 68999999999999999998876 4444432 1223332 123333444456666655532 5666
Q ss_pred HHHHHHH
Q psy5743 510 DIIHAAK 516 (644)
Q Consensus 510 ~i~~a~~ 516 (644)
.+...+.
T Consensus 65 ~~~~~~~ 71 (194)
T d1teva_ 65 ITISLLK 71 (194)
T ss_dssp HHHHHHH
T ss_pred hhhHHHH
Confidence 6655544
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0019 Score=59.88 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|+|-||+||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999998773
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0034 Score=55.63 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGK 458 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~ 458 (644)
+|+++|.+|+|||||++-+.+ .|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 589999999999999997765 45676663
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.84 E-value=0.0016 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++.|.||+||||||+++.|.--|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998877
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.83 E-value=0.0014 Score=58.66 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.-+++|||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.83 E-value=0.0013 Score=59.19 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999998874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.82 E-value=0.002 Score=59.14 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|+++|.+||||||+.+.|...+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.81 E-value=0.002 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhccC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.++|++||||||+.++|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998777
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.73 E-value=0.0023 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|.|+||.||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999887
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.73 E-value=0.0029 Score=55.72 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.71 E-value=0.0024 Score=57.50 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhccC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|||+|+..+|||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 9999999999999999998743
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0012 Score=59.15 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
=+|+|+|++++|||||++.|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0027 Score=56.54 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0009 Score=58.80 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0038 Score=57.92 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..|+|-|+-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999877753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.63 E-value=0.0025 Score=58.68 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy5743 430 MTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~ 449 (644)
.|||+|.+||||||+++.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0031 Score=58.38 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++|.+|+|-|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0052 Score=54.50 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcEEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGKIL 460 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~I~ 460 (644)
+|+++|.+|+|||||++-+.+ .|.|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence 699999999999999997654 4456666543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.50 E-value=0.0014 Score=63.64 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999887664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.003 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++.|+||.||||||..+.|.--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0035 Score=57.79 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|+.|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999999987664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.0048 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986663
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0038 Score=57.33 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.|+|+|++|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.004 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.|.||+||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998776
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.025 Score=52.99 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
.+|+|+||+=. |+.+....+.+.+++..++...|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999854 66677777777777655677889999987654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0062 Score=53.65 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc-----CCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL-----YDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~-----~~p~~G 457 (644)
+|+++|++|+|||||++-+.+- ++|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCccc
Confidence 5899999999999999988643 455555
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.0066 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc-----CCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL-----YDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~-----~~p~~G 457 (644)
+++++|.+|+|||||++-+.+- ++|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 6899999999999999976543 456655
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0069 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|++||.+|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.22 E-value=0.0038 Score=59.58 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.-+.++||+|||||||++.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999998853 3455555
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.20 E-value=0.0042 Score=55.10 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.=+|++||.+|||||||++-|.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3347999999999999999998874
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.028 Score=51.46 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
..+.+.||.|+||||+++.++..+-..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~~~ 51 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcccc
Confidence 358899999999999999999876433
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.14 E-value=0.022 Score=52.44 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHccCCCEEEeecccCCC-CHHHHHHHHHHHHHHcC-CceEEEEccCch-HHh--hcCEEEEEeCCeEEEecChhH
Q psy5743 555 ALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLIE-GKTVLTIAHRLS-TIR--KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 555 All~~p~IliLDEaTSaL-D~~~e~~i~~~l~~~~~-~~TvI~IaHrl~-~i~--~aD~Iivl~~G~ive~Gt~~e 625 (644)
..+++.+++++||.=.=- +...|..+...+..... ++.+|+.+.+.. .+. ..|-.=.+..|-+++--..+|
T Consensus 93 ~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 93 NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcH
Confidence 347789999999974432 45678888888877654 455555444422 222 112222346676665533333
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.10 E-value=0.005 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999997764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0088 Score=52.80 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|++||++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.0058 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
+++|+.+.|.|++|||||||+.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999997665
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.02 E-value=0.0075 Score=53.82 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=26.4
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
.++.--+.+ .|.-|.|.|+||+||||++-.|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355555555 899999999999999999977653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.01 E-value=0.0095 Score=52.60 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGK 458 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~ 458 (644)
+|+++|.+|+|||||++-+.+ .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999998753 44566554
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0072 Score=52.99 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.01 Score=52.65 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGKI 459 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~I 459 (644)
+|+++|++|+|||||++-+.+ .|.|+-|..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~ 42 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 42 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccccceeee
Confidence 389999999999999987764 245555544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.92 E-value=0.0062 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-.+.|+||.||||||+.+.|+--|
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999877
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.004 Score=61.73 Aligned_cols=28 Identities=29% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.-.|+|+|+.|+|||||++.|.+.+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999876643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.89 E-value=0.0065 Score=55.89 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999988766676664
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.88 E-value=0.011 Score=52.17 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGK 458 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~ 458 (644)
++.++|.+|+|||||++-+.+ .+.|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence 588999999999999998765 34565553
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.84 E-value=0.012 Score=51.77 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=0.01 Score=53.69 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy5743 431 TSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g 450 (644)
|+|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.80 E-value=0.0057 Score=54.28 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0066 Score=55.90 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
.|||+|..||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.0061 Score=57.11 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
.+.+.||+|+||||++++++..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 4789999999999999999998876543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0091 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.79 E-value=0.0068 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999997754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.78 E-value=0.009 Score=57.26 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=51.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE-EEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK-ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~ 502 (644)
=++.|..+-|.||+|||||||+--++.......|. |+||... .++++..+ ++|. | -||+.+..|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv---D--------~d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV---D--------TDSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC---C--------GGGCEEECCS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH-HhCC---C--------HHHeEEecCC
Confidence 48899999999999999999987777766666665 6677754 35555443 4454 1 1466676553
Q ss_pred CCCCCHHHHHHHHH
Q psy5743 503 SSSVTKSDIIHAAK 516 (644)
Q Consensus 503 ~~~~~~~~i~~a~~ 516 (644)
+-|++.+.++
T Consensus 122 ----~~E~~~~~~~ 131 (269)
T d1mo6a1 122 ----TGEQALEIAD 131 (269)
T ss_dssp ----SHHHHHHHHH
T ss_pred ----CHHHHHHHHH
Confidence 5666655544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.01 Score=52.58 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 589999999999999999987553
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.77 E-value=0.0082 Score=52.52 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=27.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
..+||.++++.|+=||||||+++-+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3469999999999999999999999988854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.0074 Score=54.04 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.|.||.||||||+.+.|.-.| |-+.++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 57799999999999999999877 5555554
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.75 E-value=0.0071 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0079 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|+++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 589999999999999999887543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0095 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.0093 Score=52.99 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0083 Score=53.84 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 389999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.012 Score=52.20 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|.|+|.+|+|||||++-+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.60 E-value=0.0074 Score=59.30 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
|+.-+.++||+|||||+|+|.|++.+.. --+.+|+-+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccccc
Confidence 4456779999999999999999998642 245555533
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0083 Score=56.61 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+.+.||+|+||||+++++++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.0083 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++|+.+.|.|++||||||+..-++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999987764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0085 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|++||++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999987643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.0084 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.44 E-value=0.014 Score=55.22 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
...+.|.||+|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 457999999999999999999998865443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.015 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997665
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.42 E-value=0.053 Score=49.51 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+..+++|||+|+||||.+--|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999988777776654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.42 E-value=0.014 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=21.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
.-.|.-|.|+|+||+||||++-.|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44788899999999999999876653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.42 E-value=0.011 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHH
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAML 447 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~l 447 (644)
+++|+.+.|.|++|+|||||+.-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999853
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.40 E-value=0.0096 Score=55.91 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
+++|+.+.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987554
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.0095 Score=57.51 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh-----------c
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL-----------Y 498 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~-----------~ 498 (644)
+|||.|++|||||||.+.|.-.+.-.. .....+++++.|.+-..-.=|+.+. -
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~----------------~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~R 92 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKY----------------GGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGR 92 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH----------------GGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSS
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHh----------------CCCcceEeeccCCCCCCHHHHHHHhhhccccccceec
Confidence 689999999999999987754431100 0122577778888766533222221 2
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q psy5743 499 GVNDSSSVTKSDIIHAAKEA 518 (644)
Q Consensus 499 g~~~~~~~~~~~i~~a~~~a 518 (644)
|.|. ..|-+-+.+.++..
T Consensus 93 G~Pg--ThD~~ll~~~l~~l 110 (286)
T d1odfa_ 93 GLPG--THDMKLLQEVLNTI 110 (286)
T ss_dssp CSTT--SBCHHHHHHHHHHH
T ss_pred CCCc--chhHHHHHHHHHHH
Confidence 4453 35666556555543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.35 E-value=0.0098 Score=56.96 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=39.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
.|||+|.+|||||||+..|+..- ....|+|. +|....++.+++..+.++.-+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~ 57 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRT 57 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEe
Confidence 47999999999999999996433 23456654 677788888888887776443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.34 E-value=0.01 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=24.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++|+.+.|.|++|+||||++.-++--
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.015 Score=51.89 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc-----cCCCCCcEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-----LYDPQNGKI 459 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~I 459 (644)
+|.++|.+|+|||||++-++. .|.|+-|..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~ 38 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence 689999999999999986654 345555543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.059 Score=48.83 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~ 506 (644)
.+..+.+.||+|+||||+++.+.....-.. -.+-| +-++ .|+...+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~---------~~h~D-------~~~i------------------~~~~~~I 59 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFP---------PKASD-------VLEI------------------DPEGENI 59 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSC---------CCTTT-------EEEE------------------CCSSSCB
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccc---------cCCCC-------EEEE------------------eCCcCCC
Confidence 356788999999999999999988552110 00000 0000 1111224
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~ 586 (644)
.-+++.+..+.+....+ + .+.+|+|+||+= .|..+....+.+.|++
T Consensus 60 ~Id~IR~i~~~~~~~~~-------------~--------------------~~~KviIId~ad-~l~~~aqNaLLK~LEE 105 (198)
T d2gnoa2 60 GIDDIRTIKDFLNYSPE-------------L--------------------YTRKYVIVHDCE-RMTQQAANAFLKALEE 105 (198)
T ss_dssp CHHHHHHHHHHHTSCCS-------------S--------------------SSSEEEEETTGG-GBCHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCcc-------------c--------------------CCCEEEEEeCcc-ccchhhhhHHHHHHhC
Confidence 56677665555543211 0 145899999974 4677888899999987
Q ss_pred HcCCceEEEEccCchH
Q psy5743 587 LIEGKTVLTIAHRLST 602 (644)
Q Consensus 587 ~~~~~TvI~IaHrl~~ 602 (644)
--++...|++|++++-
T Consensus 106 Pp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 106 PPEYAVIVLNTRRWHY 121 (198)
T ss_dssp CCTTEEEEEEESCGGG
T ss_pred CCCCceeeeccCChhh
Confidence 6667778899999764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.25 E-value=0.011 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987663
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.25 E-value=0.011 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.018 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.21 E-value=0.015 Score=59.97 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=34.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
+-+.++||||||||-|++.|+++++.. =+.+|...+. ..|||-.|.-
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DVe 96 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEVD 96 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCTH
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecchh
Confidence 357899999999999999999998654 5677775554 4778877753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.011 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.05 E-value=0.011 Score=54.95 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
++.++++||.= .+-......+...+.........|+++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 67799999962 333344555666666655566778888887654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.016 Score=50.76 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.01 E-value=0.012 Score=54.82 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.|||+|...+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.021 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.91 E-value=0.019 Score=50.78 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
++-.-.|.-|.|.|+||+||||++-.|..
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34456789999999999999999865543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.009 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.013 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.011 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+-..+++|||+|+||||-+-=|+..+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999987766676664
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.013 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhccC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.77 E-value=0.0093 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
-=+++++|++|+|||||++-+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998743
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.77 E-value=0.012 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHhccCC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.77 E-value=0.02 Score=51.62 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=23.4
Q ss_pred EEEEECCCCCcHHHHHHHH--hccCCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLL--LRLYDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL--~g~~~p~~G 457 (644)
++.++|.+|+|||||++-+ .-.+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 6899999999999999987 234568888
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.014 Score=51.66 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.021 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998873
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.013 Score=56.34 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=29.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
|.=+.|-+||+++|+|++|+|||||+.-+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 3446788999999999999999999999987543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.011 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.49 E-value=0.015 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++...+++|||+|+||||-+-=|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999998755555444
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.018 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999996544
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.31 E-value=0.019 Score=51.32 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
++.++|.+|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999998887777888854
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.29 E-value=0.018 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|||+|+-||||||+++.|..-+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 479999999999999999996544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.019 Score=54.82 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=33.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE-EEECCcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK-ILIDGVD 465 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~idg~~ 465 (644)
=+++|..+-|.||+|||||||+--++....-..|. +++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 48899999999999999999987777766554444 6777654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.027 Score=50.56 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy5743 430 MTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~ 449 (644)
+|+++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.21 E-value=0.024 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHH-hccCCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLL-LRLYDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL-~g~~~p~~G 457 (644)
++.++|.+|+|||||++-+ .+-+.|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999865 566778877
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.02 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 599999999999999987653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.08 E-value=0.013 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++.++|++|+|||||++-+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887544
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.05 E-value=0.022 Score=54.62 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHh---ccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLL---RLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
.+||+|.+|||||||+..|+ |..+ ..|++. +|..+.++.+++..+.++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCc
Confidence 47999999999999999995 3333 345654 555566666666555543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.05 E-value=0.02 Score=55.55 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 543 SGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
...+.+-.++++..+++++ |+..+.++..+-......+.+.+... ..+|++++|+ .+.+.
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk-~D~~~ 206 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK-LDLMD 206 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC-GGGSC
T ss_pred hhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC-CCceeeEEec-ccccc
Confidence 3344455588999998887 44567666655444334444444332 3578888875 34433
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.00 E-value=0.022 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-.++|+|+.|+|||||+.-|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.99 E-value=0.025 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhccC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.91 E-value=0.025 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.-+.+.||+|||||++++.+.+...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceeEEecCCCCCchHHHHHHHHHhC
Confidence 3488999999999999999999764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.83 E-value=0.024 Score=55.24 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 546 QKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 546 QkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
+.+--.+++..+++|+ |+.+..++..........+.+.+... ..+|++++++
T Consensus 154 ~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC-CCeEEEEEec
Confidence 4456678888888886 66677777766666555565555332 2578888876
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.70 E-value=0.029 Score=53.57 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=27.5
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
|.=+.+-+||+++|.|++|+|||||+.-+..-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999998777654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.025 Score=52.22 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=30.9
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
+.+++|+||+-. +.......+...+.+.......+++++..+-+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 357999999764 44455666667777766677788888887543
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.023 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-.|+|+||-++|||||++.|+|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999865
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.39 E-value=0.039 Score=52.92 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC-----------CCCCcEEEECC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY-----------DPQNGKILIDG 463 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~-----------~p~~G~I~idg 463 (644)
+=+|+|||-.-+|||||++.|.+-- +|.-|.|.+.+
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 3479999999999999999999542 45556665544
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.16 Score=50.36 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCCcHHHHHH
Q psy5743 427 SGSMTSVIGSSGSGKSTLAM 446 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~ 446 (644)
.+..+.|.|+.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36789999999999999874
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.15 E-value=0.032 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.|||+|..++|||||++.|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.029 Score=52.29 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.|+|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5799999999999999999998774
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.06 E-value=0.028 Score=56.12 Aligned_cols=39 Identities=36% Similarity=0.356 Sum_probs=31.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-ECCcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-IDGVD 465 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-idg~~ 465 (644)
.+|++..+.++||.|+||||+++.|++++. |.+. +|+-+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcc
Confidence 347888999999999999999999999986 4443 55543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.95 E-value=0.06 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC------------CCCCcEEEECC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY------------DPQNGKILIDG 463 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~------------~p~~G~I~idg 463 (644)
+-++||||..-||||||++.|.+-- +|.-|.+.+.+
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 3469999999999999999999752 45566666654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.34 E-value=0.042 Score=52.40 Aligned_cols=54 Identities=30% Similarity=0.525 Sum_probs=39.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcceEE
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
=+|.|..+-|.||+|||||||+-.++...+-..| -++||... .++++ +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC
Confidence 4789999999999999999999888887765545 46667642 45554 3344554
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.052 Score=53.10 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
|...+.++||+|+|||.|++.|+..+.. --|.+|...
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~ 87 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSE 87 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGG
T ss_pred CceEEEEECCCcchhHHHHHHHHhhccC--CeeEecccc
Confidence 3345789999999999999999998742 355566533
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.82 E-value=0.086 Score=51.73 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+|.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999988765544444
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.71 E-value=0.03 Score=55.17 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.|.-+.|+|+.|+|||||++.+.++++|
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 3456899999999999999999999976
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.048 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=25.5
Q ss_pred CEEEEECCCCCcHHHHHH-HHhccCCCCCcEEEECCc
Q psy5743 429 SMTSVIGSSGSGKSTLAM-LLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~-lL~g~~~p~~G~I~idg~ 464 (644)
..+.|+|+||||||++++ ++...+....+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 458999999999999986 454555444455556543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.35 E-value=0.062 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.|||||..-+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999885
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.34 E-value=0.044 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.++||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999876
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.71 E-value=0.086 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|||+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.40 E-value=0.077 Score=51.71 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
...++| .+.++||+|+|||.|++.|.+...-...-+.++|
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 444444 4556899999999999999997532112244555
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.33 E-value=0.063 Score=51.20 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=29.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 456 (644)
|.=+++-+|++++|+|++|+|||+|+..+..-..-+.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~ 95 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN 95 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhhcccC
Confidence 3446888999999999999999999986555444333
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=89.26 E-value=0.22 Score=47.17 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=42.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
..++-.++.+.||.++||||++++|..++ +.-|.+ ++ .-++.....+...-..+.+|+.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~-~~~~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NW-TNENFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CT-TCSSCTTGGGSSCSEEEECSCC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--cc-cCCCccccccCCCEEEEEeCCC
Confidence 34678899999999999999999999999 555543 33 2345666666666555566654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.22 E-value=0.086 Score=46.91 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc---CCCCCc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL---YDPQNG 457 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~---~~p~~G 457 (644)
++.++|.+|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5889999999999999988544 345555
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.66 E-value=0.16 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 467 (644)
+..+||||+|||-|+|.|+.+++. .-|.+|-....
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~s~~~ 105 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDATSLT 105 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGCC
T ss_pred eeeeCCCCccHHHHHHHHHhhccc--ceeehhhhhcc
Confidence 667899999999999999998743 35666654433
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.63 E-value=0.048 Score=45.45 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=21.0
Q ss_pred EeCCCEEEEECCCCCcHHHHH-HHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLA-MLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl-~lL~g~~ 452 (644)
+++|+.+.|++|+|||||+.+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 468999999999999999554 3444433
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.16 E-value=0.12 Score=42.31 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHH-hccCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLL-LRLYDPQ 455 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL-~g~~~p~ 455 (644)
+.|=++.+.|-||||||||.+.| ..+.+-.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~ 34 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFG 34 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 35778999999999999999888 5555533
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.06 E-value=0.12 Score=50.60 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
.|+|=|+-||||||+++.|...+......|
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence 589999999999999999999886543333
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.68 E-value=0.15 Score=49.54 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=28.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC-CCCCcEEEECCccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY-DPQNGKILIDGVDI 466 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~idg~~i 466 (644)
-.+.++||+|+|||.+++.|...+ .....-+.+|....
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~ 92 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 92 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 357899999999999999999976 33344566665443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.67 E-value=0.14 Score=47.16 Aligned_cols=20 Identities=40% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy5743 431 TSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g 450 (644)
++++|...+|||||++.|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.36 E-value=0.11 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.+.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999885
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.09 E-value=0.099 Score=50.02 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=25.8
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
|.-+++-+||+++|.|++|+|||||+.-+.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 445788999999999999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.17 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..-+.+|||+|+|||+++.-+...+
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHHH
Confidence 3467899999999999999998765
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.88 E-value=0.14 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-.|+|=|+-||||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987664
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.82 E-value=0.14 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+||+|..++|||||++.|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 37999999999999999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.2 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-+.+||++|.|||+++.-|....
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 357899999999999999998755
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.98 E-value=0.15 Score=45.85 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=28.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
+|+-.++.++||.++|||+++..|++++. |.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 68899999999999999999999999973 554
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.81 E-value=0.17 Score=46.47 Aligned_cols=21 Identities=48% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
-++|+|..++|||||+..|+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 379999999999999998863
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.01 E-value=0.34 Score=45.14 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
-+.-|.|.|+.|+||+++++.|-..-...
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~ 50 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDRS 50 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence 45568999999999999999997655443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=84.97 E-value=0.17 Score=42.18 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=24.9
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~ 587 (644)
.+-.+++-+++|+||+= .+|.++...+...++..
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred cchhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 34456788999999995 46888877776666543
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.51 E-value=0.16 Score=47.03 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
-.|+.+.|++|+|||||+..-+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 368999999999999998654433
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.40 E-value=0.31 Score=46.08 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.+-.++|||..-+|||||+|.|.|....
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEEecCccchhhhhhhhhccceE
Confidence 3456999999999999999999997643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.74 E-value=0.23 Score=48.75 Aligned_cols=19 Identities=47% Similarity=0.492 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy5743 431 TSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~ 449 (644)
|||+|..|+|||||+..|+
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999996
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.67 E-value=0.33 Score=45.02 Aligned_cols=20 Identities=45% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy5743 430 MTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~ 449 (644)
-++|+|.+++|||||+.-|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999998886
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=80.21 E-value=0.16 Score=48.43 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=20.3
Q ss_pred EeCCCEEEEECCCCCcHHH--HHHHHhc
Q psy5743 425 IQSGSMTSVIGSSGSGKST--LAMLLLR 450 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKST--Ll~lL~g 450 (644)
+++|+.+.+.+|+|||||+ |..++..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~ 33 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE 33 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4689999999999999997 3344433
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.07 E-value=0.16 Score=45.64 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.9
Q ss_pred eCCCEEEEECCCCCcHHHHH
Q psy5743 426 QSGSMTSVIGSSGSGKSTLA 445 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl 445 (644)
..|+.+.+++|+|||||+..
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 35778899999999999864
|