Psyllid ID: psy5761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDMYLFRAEIKPAT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccc
Coil and Loop (DISEMBL)
misderlekpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdMYLFRAEIKPAT
Flexible Loop (DISEMBL)
misderlekpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdmylfraeikpat
Low Complexity Region (SEG)
MISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDMYLFRAEIKPAT
Disordered region (IsUnstruct)
************************************************************************************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************************************************
Disordered Region (DISEMBL)
*******************************************************************************************************************************EGRQDMYLFRAEIKPAT
Disordered Region (DISPRO)
******************************************************************************************************************************************EIK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDMYLFRAEIKPAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
B4F777	429	High mobility group nucle	yes	N/A	0.75	0.251	0.298	3e-13
Q99PL5	1605	Ribosome-binding protein	no	N/A	0.743	0.066	0.508	5e-07
Q1ELU5	207	M-zodatoxin-Lt4a OS=Lache	N/A	N/A	0.875	0.608	0.3	0.0003

>sp|B4F777|HMGN5_RAT High mobility group nucleosome-binding domain-containing protein 5 OS=Rattus norvegicus GN=Hmgn5 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 78/114 (68%)

Query: 21  GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 80
           G++D  + +G++D  + +G++D  + EG++D  + EG++D  + EG++D  + EG++D  
Sbjct: 251 GKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLH 310

Query: 81  KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDMY 134
           + EG++D  + EG++D  + EG++D  + +G++ + + EG++D  + EG++D++
Sbjct: 311 EEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEEGKEDLHEEEGKEDLH 364

Preferentially binds to euchromatin and modulates cellular transcription by counteracting linker histone-mediated chromatin compaction.
Rattus norvegicus (taxid: 10116)

>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 83/118 (70%), Gaps = 11/118 (9%)

Query: 26  KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR- 79
           KK EG Q++ KKPEG  ++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ 
Sbjct: 571 KKIEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQG 630

Query: 80  KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQD 132
           KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q+
Sbjct: 631 KKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGPQNQAKKGEGAQNQGKKGEGAQN 688

Acts as a ribosome receptor and mediates interaction between the ribosome and the endoplasmic reticulum membrane.

Mus musculus (taxid: 10090)

>sp|Q1ELU5|LAT4A_LACTA M-zodatoxin-Lt4a OS=Lachesana tarabaevi PE=1 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 7   LEKPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEGRQDRKKPE-GRQDRKKPEGRQDRKKP 64
           L K +GR+D ++   G  +RK  E   + +K +GR+D ++   G  +RK  E   + +K 
Sbjct: 57  LRKVQGREDSEEAGRGGINRKLMEMVNNLRKVQGREDSEEAGRGGINRKLMEMVNNLRKV 116

Query: 65  EGRQDRKKPE-GRQDRKKPEGRQDRKKPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEGRQ 122
           +GR+D ++   G  +RK  E   + +K +GR+D ++   G  +RK  E   + +K +GR+
Sbjct: 117 QGREDSEEAGRGGINRKLMEMVNNLRKVQGREDSEEAGRGGINRKLMEMVNNLRKVQGRE 176

Query: 123 DRKKPEGRQD 132
           D ++  G +D
Sbjct: 177 DTEEARGLKD 186

Has antimicrobial activity against Gram-positive bacteria (A.globiformis VKM Ac-1112 (MIC=0.3 ug/ml), and B.subtilis VKM B-501 (MIC=1.1 ug/ml)), Gram-negative bacteria (E.coli DH5-alpha (MIC=4.5 ug/ml), E.coli MH1 (MIC=3.2 ug/ml), and P.aeruginosa PAO1 (MIC>35 ug/ml)), and yeasts (P.pastoris GS115 (MIC=36 ug/ml), and S.cerevisiae Y190 (MIC=18 ug/ml)). Does not have hemolytic activity against rabbit erythrocytes. Causes paralysis, but is not lethal when injected into insect (Musca domestica) larvae.

Lachesana tarabaevi (taxid: 379576)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
15811172	351	cell surface mucin-like protein [Ehrlich	0.854	0.350	0.341	5e-21
449278151	216	putative cation-transporting ATPase 1, p	0.861	0.574	0.435	4e-17
301628717	692	PREDICTED: non-lysosomal glucosylceramid	0.861	0.179	0.403	4e-15
152975486	689	hypothetical protein Bcer98_1704 [Bacill	0.861	0.179	0.346	1e-14
239626004	393	conserved hypothetical protein [Clostrid	0.791	0.290	0.410	7e-14
156342845	123	hypothetical protein NEMVEDRAFT_v1g14651	0.770	0.902	0.405	4e-13
451818787	751	collagen triple helix repeat protein [Cl	0.868	0.166	0.365	5e-13
381352259	361	circumsporozoite protein [Plasmodium kno	0.715	0.285	0.537	5e-13
307826726	359	circumsporozoite protein [Plasmodium kno	0.715	0.286	0.537	5e-13
307826748	356	circumsporozoite protein [Plasmodium kno	0.715	0.289	0.537	5e-13

>gi|15811172|gb|AAL08844.1|AF308673_2 cell surface mucin-like protein [Ehrlichia ruminantium]

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 42/123 (34%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
             PEG      PEG      PEG      PEG      PEG      PEG      PEG 
Sbjct: 149 SSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGS 208

Query: 68  QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
                PEG      PEG      PEG      PEG      PEG      PEG      P
Sbjct: 209 VVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSPEGSVVTSSP 268

Query: 128 EGR 130
           EG 
Sbjct: 269 EGS 271

Source: Ehrlichia ruminantium

Species: Ehrlichia ruminantium

Genus: Ehrlichia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|449278151|gb|EMC86106.1| putative cation-transporting ATPase 1, partial [Columba livia]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 82/124 (66%)

Query: 9   KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 68
           K E + +RKK E + +RKK E + +RKK E + +RKK E + +RKK E + +RKK E + 
Sbjct: 20  KKESKNERKKKESKNERKKKESKNERKKKESKNERKKKESKNERKKKESKNERKKKESKN 79

Query: 69  DRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 128
           +RKK E + +RKK E + +RKK E + +RKK E + +RKK E + +RKK E + +RKK E
Sbjct: 80  ERKKKESKNERKKKESKNERKKKESKNERKKKESKNERKKKESKNERKKKESKNERKKKE 139

Query: 129 GRQD 132
            + +
Sbjct: 140 SKNE 143

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301628717|ref|XP_002943495.1| PREDICTED: non-lysosomal glucosylceramidase [Xenopus (Silurana) tropicalis]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 69/124 (55%)

Query: 10  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 69
           PEG+   + PEG+   + PEG+   + PEG+   + PEG+   + PEGR   + PEGR  
Sbjct: 110 PEGQTAVRDPEGQTAVRDPEGQTAVRDPEGQTAVRDPEGQTAVRDPEGRTAVRDPEGRTA 169

Query: 70  RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 129
            +  EGR   + PEGR   + PEGR   + PEGR   + PEGR   + PEGR   + PEG
Sbjct: 170 ERDSEGRTAVRDPEGRTAVRDPEGRTAVRDPEGRTAVRDPEGRTAVRDPEGRTAVRDPEG 229

Query: 130 RQDM 133
           R  +
Sbjct: 230 RTAV 233

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|152975486|ref|YP_001375003.1| hypothetical protein Bcer98_1704 [Bacillus cytotoxicus NVH 391-98] gi|152024238|gb|ABS22008.1| 40-residue YVTN family beta-propeller repeat protein [Bacillus cytotoxicus NVH 391-98]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 70/124 (56%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
           + P+G Q  + PEG +  + P+G Q  + PEG +  + P+G Q  + PEG +  + P+G 
Sbjct: 229 QGPQGVQGIQGPEGPEGPQGPQGVQGIQGPEGPEGPQGPQGVQGIQGPEGPEGPQGPQGV 288

Query: 68  QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
           Q  + PEG +  + P+G Q  + PEG +  + P+G Q  + PEG +  + P+G Q  + P
Sbjct: 289 QGIQGPEGPEGPQGPQGVQGIQGPEGPEGPQGPQGVQGIQGPEGPEGPQGPQGVQGIQGP 348

Query: 128 EGRQ 131
           EG Q
Sbjct: 349 EGPQ 352

Source: Bacillus cytotoxicus NVH 391-98

Species: Bacillus cytotoxicus

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|239626004|ref|ZP_04669035.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520234|gb|EEQ60100.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 51/117 (43%)

Query: 17  KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 76
             P G Q    PEGRQ    P G +    PEGRQ    P G +    PEGRQ    P G 
Sbjct: 31  AGPMGPQGIPGPEGRQGATGPTGPRGIPGPEGRQGATGPAGPRGIPGPEGRQGETGPTGP 90

Query: 77  QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDM 133
           Q    PEGRQ    P G Q    PEGRQ    P G Q    PEGRQ    P G   +
Sbjct: 91  QGIPGPEGRQGETGPTGPQGIPGPEGRQGETGPTGPQGIPGPEGRQGETGPTGPMGL 147

Source: Clostridiales bacterium 1_7_47FAA

Species: Clostridiales bacterium 1_7_47FAA

Genus: N/A

Family: N/A

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

>gi|156342845|ref|XP_001620950.1| hypothetical protein NEMVEDRAFT_v1g146514 [Nematostella vectensis] gi|156206451|gb|EDO28850.1| predicted protein [Nematostella vectensis]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 45/111 (40%)

Query: 13  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 72
           R  R   EGR  R   EGR  R   EGR  R    GR  R   EGR  R   EGR  R  
Sbjct: 10  RLGRHSAEGRLGRHSAEGRLGRHSAEGRLGRHCSGGRPGRHSGEGRLGRHCAEGRLGRHS 69

Query: 73  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 123
            EGR  R    GR  R   EGR  R    GR  R   EGR  R    GR  
Sbjct: 70  AEGRLGRHCSGGRLGRHSAEGRLGRHCSGGRLGRHSAEGRLGRHCSGGRLG 120

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|451818787|ref|YP_007454988.1| collagen triple helix repeat protein [Clostridium saccharoperbutylacetonicum N1-4(HMT)] gi|451784766|gb|AGF55734.1| collagen triple helix repeat protein [Clostridium saccharoperbutylacetonicum N1-4(HMT)]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 9/134 (6%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK---PEGRQDRKKPEGRQDRKKP 64
           + P+GRQ  +  +GRQ  +  +G Q  + P+GRQ  +    P+GRQ  + P+GRQ  +  
Sbjct: 150 QGPQGRQGAQGSQGRQGAQGAQGSQGAQGPQGRQGSQGAQGPQGRQGAQGPQGRQGSQGA 209

Query: 65  EGRQDRKKPEGRQDRKKPEGRQDRKK---PEGRQDRKK---PEGRQDRKKPEGRQDRKKP 118
           +G Q R+  +GRQ  +  +GRQ  +    P+GRQ  +    P+GR+  + P+GRQ  + P
Sbjct: 210 QGPQGRQGSQGRQGAQGSQGRQGAQGAQGPQGRQGSQGAQGPQGRRGAQGPQGRQGAQGP 269

Query: 119 EGRQDRKKPEGRQD 132
           +GRQ  + P+GRQ 
Sbjct: 270 QGRQGAQGPQGRQG 283

Source: Clostridium saccharoperbutylacetonicum N1-4(HMT)

Species: Clostridium saccharoperbutylacetonicum

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|381352259|gb|AFG25470.1| circumsporozoite protein [Plasmodium knowlesi]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 78/119 (65%), Gaps = 16/119 (13%)

Query: 17  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-R 70
           K+PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R
Sbjct: 97  KQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGR 156

Query: 71  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQDRKKP-----EGRQDRKKPEGR 121
            +PEG QD R +PEG QD R +PEG QD R +PEG  +R+ P      G   + +PEG 
Sbjct: 157 AQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEG--NREAPAQPQGNGGAGQAQPEGN 213

Source: Plasmodium knowlesi

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|307826726|gb|ADN94492.1| circumsporozoite protein [Plasmodium knowlesi] gi|307826758|gb|ADN94508.1| circumsporozoite protein [Plasmodium knowlesi]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 78/119 (65%), Gaps = 16/119 (13%)

Query: 26  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-R 79
           K+PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R
Sbjct: 95  KQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGR 154

Query: 80  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQDRKKP-----EGRQDRKKPEGR 130
            +PEG QD R +PEG QD R +PEG QD R +PEG  +R+ P      G   + +PEG 
Sbjct: 155 AQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEG--NREAPAQPQGNGGAGQAQPEGN 211

Source: Plasmodium knowlesi

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|307826748|gb|ADN94503.1| circumsporozoite protein [Plasmodium knowlesi]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 78/119 (65%), Gaps = 16/119 (13%)

Query: 26  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQD-R 79
           K+PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R +PEG QD R
Sbjct: 92  KQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEGNQDGR 151

Query: 80  KKPEGRQD-RKKPEGRQD-RKKPEGRQD-RKKPEGRQDRKKP-----EGRQDRKKPEGR 130
            +PEG QD R +PEG QD R +PEG QD R +PEG  +R+ P      G   + +PEG 
Sbjct: 152 AQPEGNQDGRAQPEGNQDGRAQPEGNQDGRAQPEG--NREAPAQPQGNGGAGQAQPEGN 208

Source: Plasmodium knowlesi

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
RGD|1308736	429	Hmgn5b [Rattus norvegicus (tax	0.902	0.303	0.284	6.5e-20
UNIPROTKB|D4A2K3	429	LOC680182 "RCG38177, isoform C	0.902	0.303	0.284	6.5e-20
UNIPROTKB|F1MDC1	1554	LOC505941 "Uncharacterized pro	0.868	0.080	0.478	1.9e-17
WB|WBGene00018119	335	F36H12.3 [Caenorhabditis elega	0.881	0.379	0.323	8e-17
MGI|MGI:1932395	1605	Rrbp1 "ribosome binding protei	0.868	0.077	0.492	1.1e-16
RGD|1306536	1324	Rrbp1 "ribosome binding protei	0.965	0.104	0.461	1.8e-16
WB|WBGene00016461	301	C35E7.9 [Caenorhabditis elegan	0.881	0.421	0.305	9.8e-16
UNIPROTKB|J9P1V6	202	J9P1V6 "Uncharacterized protei	0.875	0.623	0.269	5.4e-15
UNIPROTKB|F1SSA8	364	CYLC2 "Uncharacterized protein	0.812	0.321	0.317	1e-13
UNIPROTKB|I3LC61	388	CYLC2 "Uncharacterized protein	0.812	0.301	0.317	1.2e-13

RGD|1308736 Hmgn5b [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 37/130 (28%), Positives = 87/130 (66%)

Query:     5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
             E   + EG+++  + +G++D  + +G++D  + +G++D  + EG++D  + EG++D  + 
Sbjct:   235 ESQHEEEGKEELHEEDGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEE 294

Query:    65 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 124
             EG++D  + EG++D  + EG++D  + EG++D  + EG++D  + +G++ + + EG++D 
Sbjct:   295 EGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEEGKEDL 354

Query:   125 KKPEGRQDMY 134
              + EG++D++
Sbjct:   355 HEEEGKEDLH 364

GO:0000785 "chromatin" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0031492 "nucleosomal DNA binding" evidence=IEA

UNIPROTKB|D4A2K3 LOC680182 "RCG38177, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 37/130 (28%), Positives = 87/130 (66%)

Query:     5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
             E   + EG+++  + +G++D  + +G++D  + +G++D  + EG++D  + EG++D  + 
Sbjct:   235 ESQHEEEGKEELHEEDGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEE 294

Query:    65 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 124
             EG++D  + EG++D  + EG++D  + EG++D  + EG++D  + +G++ + + EG++D 
Sbjct:   295 EGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEEGKEDL 354

Query:   125 KKPEGRQDMY 134
              + EG++D++
Sbjct:   355 HEEEGKEDLH 364

GO:0000785 "chromatin" evidence=IEA

GO:0031492 "nucleosomal DNA binding" evidence=IEA

UNIPROTKB|F1MDC1 LOC505941 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 66/138 (47%), Positives = 95/138 (68%)

Query:     8 EKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR- 61
             +K EG Q++ KK EG Q++ KK EG Q++ KK EG  ++ KK EG Q++ KK EG Q++ 
Sbjct:   460 KKAEGAQNQGKKAEGAQNQGKKSEGAQNQGKKAEGTPNQGKKAEGAQNQGKKVEGAQNQG 519

Query:    62 KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR- 115
             KK EG Q++ KK EG  ++ KK EG Q++ KK EG Q++ +K EG Q++ KK EG Q++ 
Sbjct:   520 KKAEGNQNQGKKSEGTPNQGKKAEGGQNQGKKSEGAQNQGRKAEGAQNQGKKAEGAQNQG 579

Query:   116 KKPEGRQDR-KKPEGRQD 132
             KK EG Q++ KK EG Q+
Sbjct:   580 KKAEGNQNQGKKAEGNQN 597

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

WB|WBGene00018119 F36H12.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 8.0e-17, P = 8.0e-17
 Identities = 43/133 (32%), Positives = 84/133 (63%)

Query:     3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDR-KKPEGRQDRKKPEGRQDRKKP-EGRQD 60
             +D +++ PE ++  KK E +++ KK E ++++ KK EG++  KK E ++++K+  E +++
Sbjct:    43 ADSKMKAPEEKEKSKKSEKKEEPKKEEEKKEKSKKSEGKKSDKKEEKKEEKKEEKEDKKE 102

Query:    61 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK-KPEGRQDRKKPEGRQDRKKPE 119
              KK E ++D KK E ++D KK E  +D+K  + ++D K K + +++ KK + + D K  +
Sbjct:   103 EKKEEKKEDDKKDE-KKDEKKDEKEEDKKSEDKKEDEKEKDDDKKEDKKDDKKSDNK--D 159

Query:   120 GRQDRKKPEGRQD 132
              + D KK E + D
Sbjct:   160 DKDDEKKEEKKDD 172

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1932395 Rrbp1 "ribosome binding protein 1" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 68/138 (49%), Positives = 95/138 (68%)

Query:     8 EKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR- 61
             +K EG Q++ KK E  Q + KK EG Q++ KKPEG  ++ KK EG Q++ KK EG Q++ 
Sbjct:   551 KKGEGPQNQGKKGEAAQKQDKKIEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQG 610

Query:    62 KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR- 115
             KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ 
Sbjct:   611 KKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGPQNQA 670

Query:   116 KKPEGRQDR-KKPEGRQD 132
             KK EG Q++ KK EG Q+
Sbjct:   671 KKGEGAQNQGKKGEGAQN 688

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

RGD|1306536 Rrbp1 "ribosome binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 71/154 (46%), Positives = 101/154 (65%)

Query:     3 SDERLEKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEG 57
             +  + +K EG Q++ KK EG Q++ KK E  Q + KK EG Q++ KKPEG  ++ KK EG
Sbjct:   257 NQNQAKKGEGGQNQTKKGEGLQNQGKKGEATQKQDKKIEGAQNQGKKPEGTPNQGKKGEG 316

Query:    58 RQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEGRQDR-KKPEG 111
              Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG Q++ KK EG
Sbjct:   317 AQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEG 376

Query:   112 RQDR-KKPEGRQDR-KKPEGRQDMYLFRAEIKPA 143
              Q++ KK EG Q++ KK EG+      +AE  PA
Sbjct:   377 AQNQGKKGEGAQNQGKKGEGQNQGR--KAEGTPA 408

GO:0005783 "endoplasmic reticulum" evidence=ISO

WB|WBGene00016461 C35E7.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 40/131 (30%), Positives = 82/131 (62%)

Query:     5 ERLEKPEGRQDRKKPEGRQDR-KKPEGRQDRKKPEGRQDRKKPEGRQDRK--KPEGRQDR 61
             E+ E+P+  ++ KK E ++++ KK E + D+K+   ++D KK E + ++K  K + ++D 
Sbjct:    58 EKKEEPKKEEEPKKEEEKKEKSKKSEKKDDKKEEAKKEDDKKDEKKDEKKEDKKDDKKDD 117

Query:    62 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 121
             KK E ++++K+ E  +   K E  +D KK  G +D +K E +++ +K E +++ KK E +
Sbjct:   118 KKEEKKEEKKEDEKEKGDDKKEDEKDDKK-SGSKDAEKKEEKKEEEKKEEKKEEKKEEKK 176

Query:   122 QDRKKPEGRQD 132
             +D KK + +++
Sbjct:   177 EDEKKEDEKKE 187

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|J9P1V6 J9P1V6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 35/130 (26%), Positives = 91/130 (70%)

Query:     5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
             ER  K E +++RKK   ++++K+ + R+  K+ +GR+ + + E ++ R++ + R+++++ 
Sbjct:    19 ERKRKKERKKERKKERKKKEKKRKKKRRKGKEGKGREGKGRKE-KKKRREEKRREEKRRE 77

Query:    65 EGRQDRKKPEGRQDRKKPEGRQDRKK--PEGRQDRKKPEGRQDRK-KPEGRQDRKKPEGR 121
             E R++ K+ + R+++++ E R++RKK   + R+++K+ + R++RK K E +++++K + R
Sbjct:    78 EKRREEKRKKRREEKRREEKRKERKKRKEKKRKEKKEKKKRKERKEKKEKKREKRKEKKR 137

Query:   122 QDRKKPEGRQ 131
             +++K+ E ++
Sbjct:   138 KEKKRKEKKR 147

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

UNIPROTKB|F1SSA8 CYLC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/126 (31%), Positives = 75/126 (59%)

Query:     9 KPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEG 66
             K + ++D+K P+ G++   + EG +   K + ++D+K P+ G++   + EG +   K + 
Sbjct:   170 KKDSKKDKKGPKKGKESATESEGEKGDAKKDSKKDKKGPKKGKESATESEGEKGDAKKDS 229

Query:    67 RQDRKKPE-GRQDRKKPEG-RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE---GR 121
             ++D+K P+ G++   + EG ++D K  EG++D KKP  + D  K   ++D KK E   G+
Sbjct:   230 KKDKKGPKKGKESATESEGEKKDAKDKEGKKDSKKPGDKGDESKD--KKDSKKKESKKGK 287

Query:   122 QDRKKP 127
             +D KKP
Sbjct:   288 KDEKKP 293

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

UNIPROTKB|I3LC61 CYLC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 40/126 (31%), Positives = 75/126 (59%)

Query:     9 KPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEGRQDRKKPE-GRQDRKKPEGRQDRKKPEG 66
             K + ++D+K P+ G++   + EG +   K + ++D+K P+ G++   + EG +   K + 
Sbjct:   198 KKDSKKDKKGPKKGKESATESEGEKGDAKKDSKKDKKGPKKGKESATESEGEKGDAKKDS 257

Query:    67 RQDRKKPE-GRQDRKKPEG-RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE---GR 121
             ++D+K P+ G++   + EG ++D K  EG++D KKP  + D  K   ++D KK E   G+
Sbjct:   258 KKDKKGPKKGKESATESEGEKKDAKDKEGKKDSKKPGDKGDESKD--KKDSKKKESKKGK 315

Query:   122 QDRKKP 127
             +D KKP
Sbjct:   316 KDEKKP 321

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-10
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-09
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	4e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	9e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	9e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	6e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.003
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.004
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.004

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 28/131 (21%), Positives = 55/131 (41%)

Query: 3   SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
           S     +   R++R +   R   +K     ++   E R D  +    ++R +   R DR+
Sbjct: 120 SAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRE 179

Query: 63  KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 122
             +   +R +   R++R +    +DR+    + DR++  GR+D     GR+ R+     +
Sbjct: 180 DRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDAR 239

Query: 123 DRKKPEGRQDM 133
                E R D 
Sbjct: 240 GDDNREDRGDR 250

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 24/123 (19%), Positives = 52/123 (42%)

Query: 10  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 69
                +  +   R++R +   R   +K     ++   E R D  +    ++R +   R D
Sbjct: 118 AASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGD 177

Query: 70  RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 129
           R+  +   +R +   R++R +    +DR+    + DR++  GR+D     GR+ R+    
Sbjct: 178 REDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRD 237

Query: 130 RQD 132
            + 
Sbjct: 238 ARG 240

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 27/125 (21%), Positives = 52/125 (41%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
            +   R   +K     ++   E R D  +    ++R +   R DR+  +   +R +   R
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRR 193

Query: 68  QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
           ++R +    +DR+    + DR++  GR+D     GR+ R+     +     E R DR   
Sbjct: 194 EERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGD 253

Query: 128 EGRQD 132
           +G   
Sbjct: 254 DGEGR 258

Length = 672

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 15/126 (11%), Positives = 43/126 (34%)

Query: 1   MISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 60
            + +E   K E +++ ++    +  +      + +           E   +         
Sbjct: 37  TVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96

Query: 61  RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 120
           R   +      +   R+ + K   ++ +     ++  K+   R  ++   G+  R++   
Sbjct: 97  RPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGR 156

Query: 121 RQDRKK 126
           R+ RKK
Sbjct: 157 RRRRKK 162

Length = 746

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 23/130 (17%), Positives = 52/130 (40%)

Query: 3   SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
           ++             +     +  +   R++R +   R   +K     ++   E R D  
Sbjct: 102 AEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161

Query: 63  KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 122
           +    ++R +   R DR+  +   +R +   R++R +    +DR+    + DR++  GR+
Sbjct: 162 ERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221

Query: 123 DRKKPEGRQD 132
           D     GR+ 
Sbjct: 222 DGGDRRGRRR 231

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 26/121 (21%), Positives = 49/121 (40%)

Query: 4   DERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 63
                K     ++   E R D  +    ++R +   R DR+  +   +R +   R++R +
Sbjct: 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198

Query: 64  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 123
               +DR+    + DR++  GR+D     GR+ R+     +     E R DR   +G   
Sbjct: 199 DGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258

Query: 124 R 124
            
Sbjct: 259 G 259

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 4   DERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 63
                  E R D  +    ++R +   R DR+  +   +R +   R++R +    +DR+ 
Sbjct: 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRD 207

Query: 64  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE--GRQDRKKPEGRQDRKKPEGR 121
              + DR++  GR+D     GR+ R+     +     E  G +D    EGR  R+    R
Sbjct: 208 RREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFR 267

Query: 122 QDRKKPEGRQD 132
              ++     D
Sbjct: 268 DRDRRGRRGGD 278

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 26/124 (20%), Positives = 51/124 (41%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
            +    ++R +   R DR+  +   +R +   R++R +    +DR+    + DR++  GR
Sbjct: 161 AERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGR 220

Query: 68  QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
           +D     GR+ R+     +     E R DR   +G     +   R   +   GR+     
Sbjct: 221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGG 280

Query: 128 EGRQ 131
             R+
Sbjct: 281 NERE 284

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 16/121 (13%), Positives = 41/121 (33%)

Query: 13  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 72
              R+  +   +    +               +     +  +   R++R +   R   +K
Sbjct: 85  AAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARK 144

Query: 73  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 132
                ++   E R D  +    ++R +   R DR+  +   +R +   R++R +    +D
Sbjct: 145 AGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD 204

Query: 133 M 133
            
Sbjct: 205 R 205

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 16/128 (12%), Positives = 39/128 (30%)

Query: 5   ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
                P     R        R+  +   +    +               +     +  + 
Sbjct: 68  ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQA 127

Query: 65  EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 124
             R++R +   R   +K     ++   E R D  +    ++R +   R DR+  +   +R
Sbjct: 128 RERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER 187

Query: 125 KKPEGRQD 132
            +   R++
Sbjct: 188 GERGRREE 195

Length = 672

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 8   EKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
            KPE +QDR+KP    R+DR ++ + R +R + EGR++R++    + + + +  + R+  
Sbjct: 598 AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQ 657

Query: 65  EGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 95
           +     K     + ++ P   RQ R+  E RQ
Sbjct: 658 QAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 10  PEGRQDRKKPEGRQDRKKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEG 66
            E  + +++P  + +  KPE +QDR+KP    R+DR ++ + R +R + EGR++R++   
Sbjct: 583 GEETKPQEQPAPKAE-AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRR 641

Query: 67  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 113
            + + + +  + R+  +     K     + ++ P   RQ R+  E RQ
Sbjct: 642 NRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 8   EKPEGRQDRKKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
           E+P  + +  KPE +QDR+KP    R+DR ++ + R +R + EGR++R++    + + + 
Sbjct: 590 EQPAPKAE-AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQ 648

Query: 65  EGRQDRKKPEGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 104
           +  + R+  +     K     + ++ P   RQ R+  E RQ
Sbjct: 649 QTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689

Length = 1068

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00