Psyllid ID: psy5788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLLSSRDRREKEDRIGESNESILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccccccEEEEEcccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccEEEEEcccccEEEEEEccccccEEEEEEEccccccccccccccccHHHcccccEEEEHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHccccccccccccccccccccccccEEcccEEEccc
Coil and Loop (DISEMBL)
mklsyepqELRDLIFCQIYQHQISAMEKLAKCMGwqflsssahlglggveplgnasscllsspmgdrmisvrcepqaGIQVAIahsprkdffcgqlvkerkwenlggpfkevrwdkmegknFLNKMELLMASLTSLIEGITVIAKLLSSrdrrekedrigesnesildkicpgresnlwpsaskvdelptkltrlvpfwklkwr
Flexible Loop (DISEMBL)
MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLvkerkwenlggpfkevrwdkmEGKNFLNKMELLMASLTSLIEGITVIAKllssrdrrekedrigesnesildkicpgresnlwpsaskvdelptkltrlvpfwklkwr
Low Complexity Region (SEG)
MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLLSSRDRREKEDRIGESNESILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Disordered region (IsUnstruct)
*********LRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLL*******************************W*****VDELPTKLTRLVPFWKLKW*
Disordered Region (DISOPRED)
*******QELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQ***************LVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKL*******************ILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Disordered Region (DISEMBL)
********ELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLLS*************SNESILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Disordered Region (DISPRO)
*KLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLLSS***********ESNESILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLIEGITVIAKLLSSRDRREKEDRIGESNESILDKICPGRESNLWPSASKVDELPTKLTRLVPFWKLKWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q7PVZ2	645	Mediator of RNA polymeras	yes	N/A	0.661	0.209	0.700	6e-52
Q9VEC1	642	Mediator of RNA polymeras	yes	N/A	0.661	0.210	0.700	2e-51
Q17JT4	645	Mediator of RNA polymeras	N/A	N/A	0.661	0.209	0.678	1e-49
Q0VFR9	639	Mediator of RNA polymeras	yes	N/A	0.651	0.208	0.518	1e-34
Q5ZID1	643	Mediator of RNA polymeras	yes	N/A	0.651	0.206	0.518	1e-34
Q9NVC6	651	Mediator of RNA polymeras	yes	N/A	0.651	0.204	0.496	7e-34
Q5BIR6	651	Mediator of RNA polymeras	yes	N/A	0.651	0.204	0.503	8e-34
Q8VCD5	649	Mediator of RNA polymeras	yes	N/A	0.642	0.201	0.496	4e-33
Q08BY1	643	Mediator of RNA polymeras	yes	N/A	0.656	0.208	0.492	8e-32

>sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcription subunit 17 OS=Anopheles gambiae GN=MED17 PE=3 SV=2

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 2/137 (1%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLI CQI QHQI  ++ LAKCM WQ LSSS+HLG+G VEPLGNASSC+L
Sbjct: 507 MHMSYEPQELRDLILCQISQHQIVCLQNLAKCMAWQILSSSSHLGIGSVEPLGNASSCVL 566

Query: 61  SSPMGDRMIS--VRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
           +SP  DR+I+  VRC+ Q  ++V IA SP KDFF G LV+ R WE+LGG FKEVR+DKME
Sbjct: 567 ASPNSDRLIAVQVRCDSQIDVKVFIAQSPAKDFFPGSLVQGRHWEHLGGHFKEVRFDKME 626

Query: 119 GKNFLNKMELLMASLTS 135
           GKNF NKME LMASLTS
Sbjct: 627 GKNFHNKMEFLMASLTS 643

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Anopheles gambiae (taxid: 7165)

>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription subunit 17 OS=Drosophila melanogaster GN=MED17 PE=1 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 2/137 (1%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M+LSYEPQELRDLI CQI  HQIS +  LA+CM W  LS+S HLG+G VEPLGNASSCLL
Sbjct: 503 MRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGKVEPLGNASSCLL 562

Query: 61  SSPMGDRMISV--RCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
           +SP  DRMI+V  RC+PQ  ++V IA SPR+DFF   LV E+ WENLGG FKEVR+DK+E
Sbjct: 563 ASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPLVPEKLWENLGGTFKEVRFDKIE 622

Query: 119 GKNFLNKMELLMASLTS 135
           GK+FLNKME LMASLTS
Sbjct: 623 GKSFLNKMEFLMASLTS 639

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes. Negatively regulates sex comb development.

Drosophila melanogaster (taxid: 7227)

>sp|Q17JT4|MED17_AEDAE Mediator of RNA polymerase II transcription subunit 17 OS=Aedes aegypti GN=MED17 PE=3 SV=1

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 110/137 (80%), Gaps = 2/137 (1%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYE QELRDLI  QI QHQI  ++ LAKCM WQ LS+S+HLG+G VEPLGNASSC+L
Sbjct: 507 MHMSYEMQELRDLILYQISQHQIVCLQSLAKCMAWQILSNSSHLGIGSVEPLGNASSCVL 566

Query: 61  SSPMGDRMIS--VRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
           +SP  DR+I+  VRC+PQ  ++V IA SP KDFF G LV+ R WE+LGG FKE+R+DKME
Sbjct: 567 ASPNSDRLIAVQVRCDPQLDVKVYIAQSPGKDFFPGSLVQGRHWEHLGGHFKELRFDKME 626

Query: 119 GKNFLNKMELLMASLTS 135
           GKNF NKME LMASLTS
Sbjct: 627 GKNFHNKMEFLMASLTS 643

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q0VFR9|MED17_XENTR Mediator of RNA polymerase II transcription subunit 17 OS=Xenopus tropicalis GN=med17 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 4/137 (2%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           + LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS + H+GLG VE +GNASS  +
Sbjct: 502 ITLSHQEQELQDFLLSQMSQHQVLAVQQLAKVMGWHVLSFTNHVGLGQVESVGNASSITV 561

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
           +SP GD  ISVR  P++G +V +   PR   KD   G +++E KW+ L GP+KEV+W+KM
Sbjct: 562 TSPNGDYAISVRNGPESGTKVMVQF-PRSQCKDLPKGDVLQENKWQYLRGPYKEVQWNKM 620

Query: 118 EGKNFLNKMELLMASLT 134
           EG+NF+ KMELLMA+LT
Sbjct: 621 EGRNFVYKMELLMAALT 637

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZID1|MED17_CHICK Mediator of RNA polymerase II transcription subunit 17 OS=Gallus gallus GN=MED17 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 4/137 (2%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           + LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS S H+GLG VE +GNAS+  +
Sbjct: 506 ITLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGPVESIGNASAITV 565

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
           +SP GD  ISVR  P++G +V +   PR   KD   G ++++ KW +L GPFKEV+W+KM
Sbjct: 566 ASPNGDYAISVRNGPESGSKVMVQF-PRSQCKDLPKGDVLQDNKWNHLRGPFKEVQWNKM 624

Query: 118 EGKNFLNKMELLMASLT 134
           EG+NF+ KMELLMA+LT
Sbjct: 625 EGRNFVYKMELLMAALT 641

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q9NVC6|MED17_HUMAN Mediator of RNA polymerase II transcription subunit 17 OS=Homo sapiens GN=MED17 PE=1 SV=2

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 100/137 (72%), Gaps = 4/137 (2%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           + LSY+ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  +
Sbjct: 512 ITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITV 571

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
           +SP GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KM
Sbjct: 572 ASPSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDNKWSHLRGPFKEVQWNKM 630

Query: 118 EGKNFLNKMELLMASLT 134
           EG+NF+ KMELLM++L+
Sbjct: 631 EGRNFVYKMELLMSALS 647

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q5BIR6|MED17_BOVIN Mediator of RNA polymerase II transcription subunit 17 OS=Bos taurus GN=MED17 PE=2 SV=1

 Score =  143 bits (360), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 4/137 (2%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           + LS+E QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG VE +GNAS+  +
Sbjct: 512 ITLSHEGQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPVESIGNASAITV 571

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
           +SP GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KM
Sbjct: 572 ASPNGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWNHLRGPFKEVQWNKM 630

Query: 118 EGKNFLNKMELLMASLT 134
           EG+NF+ KMELLM++L+
Sbjct: 631 EGRNFVYKMELLMSALS 647

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q8VCD5|MED17_MOUSE Mediator of RNA polymerase II transcription subunit 17 OS=Mus musculus GN=Med17 PE=1 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 99/135 (73%), Gaps = 4/135 (2%)

Query: 3   LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
           LS++ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct: 512 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 571

Query: 63  PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
           P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct: 572 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEG 630

Query: 120 KNFLNKMELLMASLT 134
           +NF+ KMELLM++L+
Sbjct: 631 RNFVYKMELLMSALS 645

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q08BY1|MED17_DANRE Mediator of RNA polymerase II transcription subunit 17 OS=Danio rerio GN=med17 PE=2 SV=1

 Score =  136 bits (343), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           + LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS S H+GLG +E +GNASS  +
Sbjct: 505 ITLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGSIESIGNASSITV 564

Query: 61  SSPMGDRMISVRCEPQAGIQVAIA--HSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
           +SP G+  ISVR  P++G +V +    S  KD      V++ KW  L G  +EV WD+ME
Sbjct: 565 ASPSGEYAISVRNGPESGCKVLVQFPRSQAKDAGRSDAVQDGKWTQLRGAHREVHWDRME 624

Query: 119 GKNFLNKMELLMASLT 134
           GKNF+ KMELLMA+LT
Sbjct: 625 GKNFVYKMELLMAALT 640

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
332022369	646	Mediator of RNA polymerase II transcript	0.661	0.208	0.866	2e-67
380011201	644	PREDICTED: LOW QUALITY PROTEIN: mediator	0.661	0.209	0.859	2e-67
66507375	644	PREDICTED: mediator of RNA polymerase II	0.661	0.209	0.859	2e-67
340713035	644	PREDICTED: LOW QUALITY PROTEIN: mediator	0.661	0.209	0.859	4e-67
350419682	644	PREDICTED: mediator of RNA polymerase II	0.661	0.209	0.859	4e-67
383847603	644	PREDICTED: mediator of RNA polymerase II	0.661	0.209	0.859	4e-67
307212331	646	Mediator of RNA polymerase II transcript	0.661	0.208	0.844	2e-66
307172011	645	Mediator of RNA polymerase II transcript	0.661	0.209	0.844	1e-65
156551237	641	PREDICTED: mediator of RNA polymerase II	0.661	0.210	0.851	2e-65
242014384	651	CRSP complex subunit, putative [Pediculu	0.661	0.207	0.829	5e-62

>gi|332022369|gb|EGI62681.1| Mediator of RNA polymerase II transcription subunit 17 [Acromyrmex echinatior]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQISA++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 511 MHMSYEPQELRDLIFCQIYQHQISAVQALAKCMGWQFLANSSHLGLGSVEPLGNASSCIL 570

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 571 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 630

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 631 NFLNKMELLMASLTS 645

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011201|ref|XP_003689699.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 17-like [Apis florea]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 509 MHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 568

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 569 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 628

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 629 NFLNKMELLMASLTS 643

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66507375|ref|XP_394516.2| PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Apis mellifera]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 509 MHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 568

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 569 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 628

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 629 NFLNKMELLMASLTS 643

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713035|ref|XP_003395057.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 17-like [Bombus terrestris]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 509 MHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 568

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 569 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 628

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 629 NFLNKMELLMASLTS 643

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419682|ref|XP_003492267.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Bombus impatiens]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 509 MHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 568

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 569 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 628

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 629 NFLNKMELLMASLTS 643

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847603|ref|XP_003699442.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Megachile rotundata]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 509 MHMSYEPQELRDLIFCQIYQHQITAVQSLAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 568

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 569 ASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 628

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 629 NFLNKMELLMASLTS 643

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212331|gb|EFN88135.1| Mediator of RNA polymerase II transcription subunit 17 [Harpegnathos saltator]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 129/135 (95%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLG+G VEPLGNASSC+L
Sbjct: 511 MHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGVGSVEPLGNASSCIL 570

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QV+IAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 571 ASPIGDRMIAVRCEPQTGVQVSIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 630

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 631 NFLNKMELLMASLTS 645

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172011|gb|EFN63605.1| Mediator of RNA polymerase II transcription subunit 17 [Camponotus floridanus]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 128/135 (94%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQI+A++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 510 MHMSYEPQELRDLIFCQIYQHQINAVQALAKCMGWQFLANSSHLGLGSVEPLGNASSCIL 569

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP+GDRMI+VRCEPQ G+QVAIAHSPRKDFF GQLV+ERKWENLGG FKEVRWDKMEGK
Sbjct: 570 ASPIGDRMIAVRCEPQMGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGK 629

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLM+SL S
Sbjct: 630 NFLNKMELLMSSLMS 644

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551237|ref|XP_001605806.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Nasonia vitripennis]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/135 (85%), Positives = 126/135 (93%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M +SYEPQELRDLIFCQIYQHQISA++ LAKCMGWQFL++S+HLGLG VEPLGNASSC+L
Sbjct: 506 MHMSYEPQELRDLIFCQIYQHQISAVQGLAKCMGWQFLANSSHLGLGAVEPLGNASSCIL 565

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP GDRMI+VRC+P   IQV+IAHSPRKDFF GQLVKERKWENLGG FKEVRWDKMEGK
Sbjct: 566 ASPNGDRMIAVRCDPHTKIQVSIAHSPRKDFFPGQLVKERKWENLGGSFKEVRWDKMEGK 625

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 626 NFLNKMELLMASLTS 640

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014384|ref|XP_002427871.1| CRSP complex subunit, putative [Pediculus humanus corporis] gi|212512340|gb|EEB15133.1| CRSP complex subunit, putative [Pediculus humanus corporis]

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 123/135 (91%)

Query: 1   MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
           M++SYEPQELRDL++CQIYQHQI+A + LAKCMGWQ L++S HLGLG VEPLGNASS +L
Sbjct: 515 MRMSYEPQELRDLLYCQIYQHQITAAQALAKCMGWQILANSLHLGLGSVEPLGNASSIIL 574

Query: 61  SSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
           +SP GDRMI+VRCEPQ GIQV IA SPRKDFF GQLVKERKWENLGG FKEVRWDKMEGK
Sbjct: 575 TSPTGDRMIAVRCEPQFGIQVWIAQSPRKDFFPGQLVKERKWENLGGGFKEVRWDKMEGK 634

Query: 121 NFLNKMELLMASLTS 135
           NFLNKMELLMASLTS
Sbjct: 635 NFLNKMELLMASLTS 649

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0038578	642	MED17 "Mediator complex subuni	0.661	0.210	0.700	5.4e-47
UNIPROTKB|F1NY10	643	MED17 "Mediator of RNA polymer	0.647	0.205	0.522	6.7e-32
UNIPROTKB|Q5ZID1	643	MED17 "Mediator of RNA polymer	0.647	0.205	0.522	6.7e-32
UNIPROTKB|Q9NVC6	651	MED17 "Mediator of RNA polymer	0.642	0.201	0.503	2.5e-31
UNIPROTKB|Q5BIR6	651	MED17 "Mediator of RNA polymer	0.642	0.201	0.511	6.8e-31
MGI|MGI:2182585	649	Med17 "mediator complex subuni	0.642	0.201	0.496	1.1e-30
RGD|1311120	649	Med17 "mediator complex subuni	0.642	0.201	0.496	1.1e-30
UNIPROTKB|E2RSF3	651	MED17 "Uncharacterized protein	0.642	0.201	0.496	1.1e-30
UNIPROTKB|F1STK7	651	MED17 "Uncharacterized protein	0.642	0.201	0.496	1.9e-30
ZFIN|ZDB-GENE-040302-1	643	med17 "mediator complex subuni	0.647	0.205	0.5	1.3e-29

FB|FBgn0038578 MED17 "Mediator complex subunit 17" [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 96/137 (70%), Positives = 111/137 (81%)

Query:     1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
             M+LSYEPQELRDLI CQI  HQIS +  LA+CM W  LS+S HLG+G VEPLGNASSCLL
Sbjct:   503 MRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGKVEPLGNASSCLL 562

Query:    61 SSPMGDRMISV--RCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
             +SP  DRMI+V  RC+PQ  ++V IA SPR+DFF   LV E+ WENLGG FKEVR+DK+E
Sbjct:   563 ASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPLVPEKLWENLGGTFKEVRFDKIE 622

Query:   119 GKNFLNKMELLMASLTS 135
             GK+FLNKME LMASLTS
Sbjct:   623 GKSFLNKMEFLMASLTS 639

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0009987 "cellular process" evidence=IMP

GO:0045498 "sex comb development" evidence=IGI

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

UNIPROTKB|F1NY10 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 6.7e-32, P = 6.7e-32
 Identities = 70/134 (52%), Positives = 97/134 (72%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS S H+GLG VE +GNAS+  ++S
Sbjct:   508 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGPVESIGNASAITVAS 567

Query:    63 PMGDRMISVRCEPQAG--IQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
             P GD  ISVR  P++G  + V    S  KD   G ++++ KW +L GPFKEV+W+KMEG+
Sbjct:   568 PNGDYAISVRNGPESGSKVMVQFPRSQCKDLPKGDVLQDNKWNHLRGPFKEVQWNKMEGR 627

Query:   121 NFLNKMELLMASLT 134
             NF+ KMELLMA+LT
Sbjct:   628 NFVYKMELLMAALT 641

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

UNIPROTKB|Q5ZID1 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 6.7e-32, P = 6.7e-32
 Identities = 70/134 (52%), Positives = 97/134 (72%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS S H+GLG VE +GNAS+  ++S
Sbjct:   508 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGPVESIGNASAITVAS 567

Query:    63 PMGDRMISVRCEPQAG--IQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
             P GD  ISVR  P++G  + V    S  KD   G ++++ KW +L GPFKEV+W+KMEG+
Sbjct:   568 PNGDYAISVRNGPESGSKVMVQFPRSQCKDLPKGDVLQDNKWNHLRGPFKEVQWNKMEGR 627

Query:   121 NFLNKMELLMASLT 134
             NF+ KMELLMA+LT
Sbjct:   628 NFVYKMELLMAALT 641

GO:0016592 "mediator complex" evidence=ISS

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=ISS

UNIPROTKB|Q9NVC6 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 2.5e-31, P = 2.5e-31
 Identities = 68/135 (50%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LSY+ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct:   514 LSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 573

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct:   574 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEG 632

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   633 RNFVYKMELLMSALS 647

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=NAS

GO:0030521 "androgen receptor signaling pathway" evidence=IDA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0016592 "mediator complex" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042809 "vitamin D receptor binding" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|Q5BIR6 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 6.8e-31, P = 6.8e-31
 Identities = 69/135 (51%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS+E QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG VE +GNAS+  ++S
Sbjct:   514 LSHEGQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPVESIGNASAITVAS 573

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct:   574 PNGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWNHLRGPFKEVQWNKMEG 632

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   633 RNFVYKMELLMSALS 647

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:2182585 Med17 "mediator complex subunit 17" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 67/135 (49%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct:   512 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 571

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct:   572 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEG 630

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   631 RNFVYKMELLMSALS 645

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004872 "receptor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016592 "mediator complex" evidence=ISO;ISA;IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

RGD|1311120 Med17 "mediator complex subunit 17" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 67/135 (49%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct:   512 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 571

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct:   572 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEG 630

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   631 RNFVYKMELLMSALS 645

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0019827 "stem cell maintenance" evidence=IEA;ISO

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

UNIPROTKB|E2RSF3 MED17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 67/135 (49%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct:   514 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 573

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G ++ +   PR   KD     ++++ KW +L GPFKEV+W+KMEG
Sbjct:   574 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWNHLRGPFKEVQWNKMEG 632

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   633 RNFVYKMELLMSALS 647

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1STK7 MED17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 343 (125.8 bits), Expect = 1.9e-30, P = 1.9e-30
 Identities = 67/135 (49%), Positives = 99/135 (73%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+  ++S
Sbjct:   514 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 573

Query:    63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
             P GD  ISVR  P++G +V +   PR   KD     ++++ KW +L GPF+EV+W+KMEG
Sbjct:   574 PSGDYAISVRNGPESGSKVMVQF-PRNQCKDLPKSDVLQDSKWNHLRGPFREVQWNKMEG 632

Query:   120 KNFLNKMELLMASLT 134
             +NF+ KMELLM++L+
Sbjct:   633 RNFVYKMELLMSALS 647

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-040302-1 med17 "mediator complex subunit 17" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/134 (50%), Positives = 92/134 (68%)

Query:     3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
             LS++ QEL+D +  Q+ QHQ+ A+++LAK MGW  LS S H+GLG +E +GNASS  ++S
Sbjct:   507 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGSIESIGNASSITVAS 566

Query:    63 PMGDRMISVRCEPQAGIQVAIA--HSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGK 120
             P G+  ISVR  P++G +V +    S  KD      V++ KW  L G  +EV WD+MEGK
Sbjct:   567 PSGEYAISVRNGPESGCKVLVQFPRSQAKDAGRSDAVQDGKWTQLRGAHREVHWDRMEGK 626

Query:   121 NFLNKMELLMASLT 134
             NF+ KMELLMA+LT
Sbjct:   627 NFVYKMELLMAALT 640


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       204   0.00094  111 3  11 22  0.49    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  19.91u 0.07s 19.98t   Elapsed:  00:00:03
  Total cpu time:  19.91u 0.07s 19.98t   Elapsed:  00:00:04
  Start:  Thu Aug 15 12:29:46 2013   End:  Thu Aug 15 12:29:50 2013

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PVZ2	MED17_ANOGA	No assigned EC number	0.7007	0.6617	0.2093	yes	N/A
Q9VEC1	MED17_DROME	No assigned EC number	0.7007	0.6617	0.2102	yes	N/A
Q5ZID1	MED17_CHICK	No assigned EC number	0.5182	0.6519	0.2068	yes	N/A
Q0VFR9	MED17_XENTR	No assigned EC number	0.5182	0.6519	0.2081	yes	N/A
Q5BIR6	MED17_BOVIN	No assigned EC number	0.5036	0.6519	0.2043	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG4512|consensus	625		100.0

>KOG4512|consensus

Probab=100.00  E-value=2.9e-48  Score=363.17  Aligned_cols=137  Identities=42%  Similarity=0.578  Sum_probs=132.0

Q ss_pred             CcccCchHhHHHHHHHHHHHHHHHHHHHHHHHhceeecccCCccccCCCCccCCcceeEeecCCCCeeeEEeeCCCCce-
Q psy5788           1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEPQAGI-   79 (204)
Q Consensus         1 vtLS~e~QELrDlil~Qi~QHQV~~vq~LAK~MGW~vLs~S~HvG~GpvE~lGnassillASP~gdr~IaVR~~p~~gI-   79 (204)
                      |+|||++|||||+|+|||.||||+++++|||+|+|+||++|||+|.|++|++||||+|.+|||++||+|+||..+..|+ 
T Consensus       486 i~lSy~~qelrd~ll~qi~qhqI~~~~~Lar~m~w~vls~Snh~g~g~~E~vgnas~~~~asp~~d~~i~vr~~~~~g~~  565 (625)
T KOG4512|consen  486 IELSYPKQELRDMLLVQIVQHQIQSGNGLARDMKWKVLSYSNHYGEGDSEKVGNASWKDSASPAQDYTILVRDVFKTGEK  565 (625)
T ss_pred             EEEecCHHHHHHHHHHHHHHHHHHHHHhHhhccCceEeecccccCCCcccccccchhhhccCcccCceEEEeeccCCcch
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999987666666 


Q ss_pred             -EEEEcCCCCCCCCCcccccccccccCCCCceeeecccCCCChhHHHHHHHHHHhhhhh
Q psy5788          80 -QVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKMEGKNFLNKMELLMASLTSLI  137 (204)
Q Consensus        80 -~V~I~rs~~~Df~~sdlv~D~KWe~Lgg~FKEV~w~kMeGrNFV~KMELLMa~Lt~~~  137 (204)
                       +|.++|++++|||+|+++++.+|++|+|.||||+|+|||||+|+||||+||+.|++|+
T Consensus       566 ikv~f~r~~~kdlf~s~i~~~~~w~~l~g~fkeV~f~k~egk~f~~kme~lm~~L~~~~  624 (625)
T KOG4512|consen  566 IKVDFSRKAQKDLFLSRIFNHYFWVLLFGIFKEVFFSKFEGKVFSHKMEILMKRLDFCL  624 (625)
T ss_pred             hhhhcchhhhhccchhhhhhHHHHHHhccchheeehhhhccchhhhHHHHHHHhccccc
Confidence             7777999999999999999999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00