Psyllid ID: psy5809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MSYHDSKASFVSDKSTYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEcccccccccccccEEEEEEEccccccccccccccccEEEcccccEccccEEEccccccccccccccccccccccccccccccccccccEccccccccccccccccEEEcccccccccccccccHHcccccccccccccccccc
Coil and Loop (DISEMBL)
msyhdskasfvsdkstytnfskngnensdfCIIFLfldpyhashcigkcpvgeflcigscvcipqewkcdgdldcyagedevkcvpekecpavrpvacpqsdspkmcdkgfcpplfkclkkswlcdgeddcgdfsdEVNCVLARKfndtklsaedfilvp
Flexible Loop (DISEMBL)
msyhdskasfvsdkstyTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKfndtklsaedfilvp
Low Complexity Region (SEG)
MSYHDSKASFVSDKSTYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Disordered region (IsUnstruct)
***************************SDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC******KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFIL**
Disordered Region (DISOPRED)
**************STYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Disordered Region (DISEMBL)
**********VSDKSTYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Disordered Region (DISPRO)
********SFVSDKSTYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSYHDSKASFVSDKSTYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDTKLSAEDFILVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
O75096	1905	Low-density lipoprotein r	yes	N/A	0.468	0.039	0.385	2e-11
Q9QYP1	1905	Low-density lipoprotein r	yes	N/A	0.512	0.043	0.378	2e-11
Q8VI56	1905	Low-density lipoprotein r	yes	N/A	0.468	0.039	0.385	2e-11
P98158	4660	Low-density lipoprotein r	no	N/A	0.481	0.016	0.4	5e-10
P98157	4543	Low-density lipoprotein r	no	N/A	0.543	0.019	0.39	8e-10
A2ARV4	4660	Low-density lipoprotein r	no	N/A	0.481	0.016	0.410	8e-10
P98164	4655	Low-density lipoprotein r	no	N/A	0.487	0.016	0.393	1e-09
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.543	0.019	0.39	1e-09
Q04833	4753	Low-density lipoprotein r	no	N/A	0.456	0.015	0.428	2e-09
Q91ZX7	4545	Prolow-density lipoprotei	no	N/A	0.543	0.019	0.39	3e-09

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 49  CPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
           C    F C    +G C CIP +W+CDGD DC    DE  C+     P   P+        
Sbjct: 27  CGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGCI----LPTCSPLDF------ 76

Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 77  -HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 105

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.
Homo sapiens (taxid: 9606)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 21/103 (20%)

Query: 42  ASHCIGKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVA 97
           AS+    C    F C    +G C CIP +W+CDGD DC    DE  C      P   P+ 
Sbjct: 20  ASNLECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGCT----LPTCSPLD 75

Query: 98  CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 76  F-------HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 105

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 21/96 (21%)

Query: 49  CPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
           C    F C    +G C CIP +W+CDGD DC    DE  C      P   P+        
Sbjct: 27  CGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGCT----LPTCSPLDF------ 76

Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 77  -HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 105

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 18/95 (18%)

Query: 47   GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE-VKCVPEKECPAVRPVACPQSDSPK 105
            G C   EF C G   CIP  W+CDG  DC  G DE   CVP+   P           +  
Sbjct: 1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHTGCVPKTCSP-----------THF 1277

Query: 106  MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            +CD G       C+ K+W+CDG++DC D SDE +C
Sbjct: 1278 LCDNG------NCIYKAWICDGDNDCRDMSDEKDC 1306

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 41   HASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQ 100
             A+   G C   EF C    +CIP  W+CDGD DC    D      EK C  V  V  P 
Sbjct: 1052 QATRPPGGCHTDEFQCRLDGLCIPMRWRCDGDTDCMDSSD------EKNCEGVTHVCDPN 1105

Query: 101  SDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    K  C    +C+ K+W+CDG+ DC D SDE NC
Sbjct: 1106 V-------KFGCKDSARCISKAWVCDGDSDCEDNSDEENC 1138

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 47   GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK-CVPEKECPAVRPVACPQSDSPK 105
            G C   EF C G   CIP  W+CDG  DC  G DE   CVP+   P           S  
Sbjct: 1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDCIQGSDEHNGCVPKTCSP-----------SHF 1277

Query: 106  MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            +CD G       C+  SW+CDG++DC D SDE +C
Sbjct: 1278 LCDNG------NCIYNSWVCDGDNDCRDMSDEKDC 1306

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 16/94 (17%)

Query: 47   GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106
            G C   EF C    +CIP  W+CDG  DC  G DE      K CP+          S   
Sbjct: 1228 GMCHSDEFQCQEDGICIPNFWECDGHPDCLYGSDEHNACVPKTCPS----------SYFH 1277

Query: 107  CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            CD G       C+ ++WLCD ++DCGD SDE +C
Sbjct: 1278 CDNG------NCIHRAWLCDRDNDCGDMSDEKDC 1305

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 41   HASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQ 100
             A+   G C   EF C    +CIP  W+CDGD DC    D      EK C  V  V  P 
Sbjct: 1054 QATRPPGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSD------EKSCEGVTHVCDPS 1107

Query: 101  SDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    K  C    +C+ K+W+CDG++DC D SDE NC
Sbjct: 1108 V-------KFGCKDSARCISKAWVCDGDNDCEDNSDEENC 1140

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 48/91 (52%), Gaps = 18/91 (19%)

Query: 49   CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK--CVPEKECPAVRPVACPQSDSPKM 106
            C   +F C+ S +CIP  WKCDG  DC  G DE K  C   ++C          SD  K 
Sbjct: 1270 CTPDQFKCVSSGLCIPASWKCDGQQDCDDGSDEPKFGCTSGRQC---------SSDQFK- 1319

Query: 107  CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
            C  G      +C+  +WLCDGE+DCGD SDE
Sbjct: 1320 CGNG------RCILNNWLCDGENDCGDGSDE 1344

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 41   HASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQ 100
             A+   G C   EF C    +CIP  W+CDGD DC    D      EK C  V  V  P 
Sbjct: 1055 QATRPPGGCHSDEFQCRLDGLCIPLRWRCDGDTDCMDSSD------EKSCEGVTHVCDPN 1108

Query: 101  SDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    K  C    +C+ K+W+CDG+ DC D SDE NC
Sbjct: 1109 V-------KFGCKDSARCISKAWVCDGDSDCEDNSDEENC 1141

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
242021136	2101	low-density lipoprotein receptor, putati	0.575	0.043	0.350	4e-11
345481629	1996	PREDICTED: low-density lipoprotein recep	0.487	0.039	0.397	6e-11
341880073	1177	hypothetical protein CAEBREN_12029 [Caen	0.612	0.083	0.387	9e-11
426368168	1956	PREDICTED: low-density lipoprotein recep	0.55	0.044	0.385	2e-10
260827336	1391	hypothetical protein BRAFLDRAFT_183747 [	0.462	0.053	0.423	2e-10
324499453	4738	Low-density lipoprotein receptor-related	0.475	0.016	0.494	2e-10
326670753	4697	PREDICTED: low-density lipoprotein recep	0.506	0.017	0.425	3e-10
440903451	1898	Low-density lipoprotein receptor-related	0.55	0.046	0.385	3e-10
397488443	1973	PREDICTED: LOW QUALITY PROTEIN: low-dens	0.543	0.044	0.379	4e-10
444721558	4056	Low-density lipoprotein receptor-related	0.481	0.018	0.452	5e-10

>gi|242021136|ref|XP_002431002.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212516226|gb|EEB18264.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 45/137 (32%)

Query: 43  SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRP------- 95
           S C G+C   EFLC+GSC CIP  ++CDGD DC   +DE++C  E E    +        
Sbjct: 265 SPCGGECEQDEFLCVGSCTCIPNTFRCDGDADCTGEQDELEC-GETELDIFQSCLETDNY 323

Query: 96  VACPQS-------------------------------DSPKMCDKGFCPPLFKCLKKSWL 124
           V CP+S                               +    C+ GF      C++KSWL
Sbjct: 324 VRCPRSGKCIKKTWLCDGDDDCGDFSDETHCDGRNCTEGEFECNNGF------CIQKSWL 377

Query: 125 CDGEDDCGDFSDEVNCV 141
           CDG++DC D+SDE NC 
Sbjct: 378 CDGDNDCKDYSDETNCT 394

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481629|ref|XP_001605666.2| PREDICTED: low-density lipoprotein receptor-related protein 4-like [Nasonia vitripennis]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 20/98 (20%)

Query: 49  CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP------EKECPAVRPVACPQSD 102
           C   +FLCI +C CI +E +C+G++DC   +DE+ C         + C   R V CP S 
Sbjct: 242 CTSDQFLCISTCTCIARENRCNGEMDCENDDDELNCEGYEGHHLNETCHGKRSVRCPNSG 301

Query: 103 SPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                         KC+ K WLCDG++DCGDFSDE +C
Sbjct: 302 --------------KCIAKEWLCDGDNDCGDFSDESHC 325

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341880073|gb|EGT36008.1| hypothetical protein CAEBREN_12029 [Caenorhabditis brenneri]

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 13/111 (11%)

Query: 35  LFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVR 94
           L  +P H +  + +CP GE    GS  CIP  W+CD ++DC    D      EK C A++
Sbjct: 464 LLTEPSHCNRTVNQCPPGEMWKCGSGECIPSRWRCDSEVDCKDHSD------EKNCTAIQ 517

Query: 95  PVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARK 145
                   S K+  +  C    KC+ KS++CDGE DC D SDE +CV A+K
Sbjct: 518 -------HSCKLAGEFACKSSNKCINKSFVCDGEFDCADGSDEDDCVDAKK 561

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|426368168|ref|XP_004051083.1| PREDICTED: low-density lipoprotein receptor-related protein 4 [Gorilla gorilla gorilla]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 21/109 (19%)

Query: 36  FLDPYHASHCIGKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECP 91
           FL P  AS     C    F C    +G C CIP +W+CDGD DC    DE  C+     P
Sbjct: 65  FLLPCLASSPECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGCI----LP 120

Query: 92  AVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
              P+          CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 121 TCSPLDF-------HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 156

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260827336|ref|XP_002608621.1| hypothetical protein BRAFLDRAFT_183747 [Branchiostoma floridae] gi|229293972|gb|EEN64631.1| hypothetical protein BRAFLDRAFT_183747 [Branchiostoma floridae]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 18/92 (19%)

Query: 49  CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
           C  GEF C GS +CI   W+CDGD DC    DE  C P   C          + +   C 
Sbjct: 45  CRSGEFQC-GSGICINAAWQCDGDFDCDDQSDEKNC-PTPSC----------ASNQFRCQ 92

Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            G      +C++ SW CDGEDDC D SDEV+C
Sbjct: 93  SG------RCIRLSWRCDGEDDCFDNSDEVDC 118

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324499453|gb|ADY39765.1| Low-density lipoprotein receptor-related protein [Ascaris suum]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 53/91 (58%), Gaps = 15/91 (16%)

Query: 47   GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106
            GKC   EF C+ S +CIP  WKCDG LDC  G DE    P   C A +   CP +D  K 
Sbjct: 1275 GKCKHNEFTCVSSGLCIPINWKCDGTLDCEDGSDE----PTGVCSASQ---CP-ADHFK- 1325

Query: 107  CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
            CD G      +C+  +WLCDGE+DCGD SDE
Sbjct: 1326 CDNG------RCIFNTWLCDGENDCGDNSDE 1350

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|326670753|ref|XP_001920039.3| PREDICTED: low-density lipoprotein receptor-related protein 1B [Danio rerio]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 48   KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
            +C   EF C     CIP+ W+CDGD DC  G DE        C  V+ +  PQ+      
Sbjct: 1180 ECSAEEFHCRADGTCIPERWRCDGDKDCEDGSDETN------CKGVKRMCDPQA------ 1227

Query: 108  DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
             K  C    KC+ KSW+CDG+DDC D SDE +CV
Sbjct: 1228 -KFTCKTSGKCISKSWVCDGDDDCEDRSDEESCV 1260

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440903451|gb|ELR54106.1| Low-density lipoprotein receptor-related protein 4, partial [Bos grunniens mutus]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 21/109 (19%)

Query: 36  FLDPYHASHCIGKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECP 91
           FL P  AS     C    F C    +G C CIP +W+CDGD DC    DE  C    + P
Sbjct: 7   FLCPGLASSPECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGC----KLP 62

Query: 92  AVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
              P+          CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 63  TCSPLDF-------HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 98

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397488443|ref|XP_003815275.1| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 4 [Pan paniscus]

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 21/108 (19%)

Query: 37  LDPYHASHCIGKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA 92
           L P  AS     C    F C    +G C CIP +W+CDGD DC    DE  C+     P 
Sbjct: 83  LRPGLASSPECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDHSDEDGCI----LPT 138

Query: 93  VRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             P+          CD G      KC+++SW+CDG++DC D SDE +C
Sbjct: 139 CSPLDF-------HCDNG------KCIRRSWVCDGDNDCEDDSDEQDC 173

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444721558|gb|ELW62289.1| Low-density lipoprotein receptor-related protein 2 [Tupaia chinensis]

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 50/95 (52%), Gaps = 18/95 (18%)

Query: 47   GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK-CVPEKECPAVRPVACPQSDSPK 105
            G C + EF C G   CIP  W+CDG  DC  G DE   CVP K CP+          S  
Sbjct: 1202 GMCHLDEFQCQGDGTCIPDTWECDGHPDCIQGSDEHHGCVP-KTCPS----------SHF 1250

Query: 106  MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             CD G       C+ K WLCDG++DCGD SDE +C
Sbjct: 1251 SCDNG------HCIYKEWLCDGDNDCGDMSDEKDC 1279

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
RGD|1305860	264	Cd320 "CD320 molecule" [Rattus	0.368	0.223	0.428	6.6e-16
MGI|MGI:1860083	260	Cd320 "CD320 antigen" [Mus mus	0.362	0.223	0.45	4.9e-15
UNIPROTKB|A6QNY1	255	CD320 "CD320 antigen" [Bos tau	0.587	0.368	0.386	1.1e-14
ZFIN|ZDB-GENE-070912-401	4456	lrp1bb "low density lipoprotei	0.506	0.018	0.425	2.2e-14
MGI|MGI:96765	862	Ldlr "low density lipoprotein	0.625	0.116	0.398	4.3e-13
UNIPROTKB|E9PC35	1225	LRP2 "Low-density lipoprotein	0.481	0.062	0.421	1.1e-12
WB|WBGene00020481	911	T13C2.6 [Caenorhabditis elegan	0.718	0.126	0.320	1.2e-12
RGD|68407	4660	Lrp2 "low density lipoprotein	0.481	0.016	0.421	1.5e-12
UNIPROTKB|P98158	4660	Lrp2 "Low-density lipoprotein	0.481	0.016	0.421	1.5e-12
MGI|MGI:95794	4660	Lrp2 "low density lipoprotein	0.481	0.016	0.431	1.5e-12

RGD|1305860 Cd320 "CD320 molecule" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 27/63 (42%), Positives = 32/63 (50%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC-PQSDSPK 105
             G CP   F C+ S  C+P  W+CDGD DC  G DE +C  E   P  +   C PQ   P 
Sbjct:    49 GSCPTDTFKCLTSGYCVPLSWRCDGDRDCSDGSDEEECRIE---PCAQNRQCQPQPALPC 105

Query:   106 MCD 108
              CD
Sbjct:   106 SCD 108

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008083 "growth factor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031419 "cobalamin binding" evidence=IEA;ISO

MGI|MGI:1860083 Cd320 "CD320 antigen" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
 Identities = 27/60 (45%), Positives = 30/60 (50%)

Query:    49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
             CP   F C+ S  C+P  W+CDGD DC  G DE  C  E  C A      PQS  P  CD
Sbjct:    47 CPTDTFQCLTSGYCVPLSWRCDGDQDCSDGSDEEDCRIES-C-AQNGQCQPQSALPCSCD 104

GO:0005886 "plasma membrane" evidence=ISO

GO:0008083 "growth factor activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031419 "cobalamin binding" evidence=ISO

UNIPROTKB|A6QNY1 CD320 "CD320 antigen" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/106 (38%), Positives = 51/106 (48%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC---VPE-KECPAVRPVACPQSD 102
             G CP   F C     C+P  W+CD D DC  G DE +C   VP     P      CP  +
Sbjct:    51 GSCPPTNFQCRSDGRCLPLIWRCDVDQDCPDGSDEEECGTEVPNGSPSPCDIMDDCPDHN 110

Query:   103 S------PKMCDKG-FCPPLFK-CLKKSWLCDGEDDCGDFSDEVNC 140
                    P+ C +G  C PL   C+  +WLCDG  DC D+SDE+ C
Sbjct:   111 KNLLNCGPQSCPEGELCCPLDGVCIPSTWLCDGHRDCSDYSDELGC 156

GO:0031419 "cobalamin binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

ZFIN|ZDB-GENE-070912-401 lrp1bb "low density lipoprotein receptor-related protein 1Bb" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 40/94 (42%), Positives = 50/94 (53%)

Query:    48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
             +C   EF C     CIP+ W+CDGD DC  G DE  C        V+ +  PQ+      
Sbjct:   939 ECSAEEFHCRADGTCIPERWRCDGDKDCEDGSDETNC------KGVKRMCDPQA------ 986

Query:   108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
              K  C    KC+ KSW+CDG+DDC D SDE +CV
Sbjct:   987 -KFTCKTSGKCISKSWVCDGDDDCEDRSDEESCV 1019

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:96765 Ldlr "low density lipoprotein receptor" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 43/108 (39%), Positives = 54/108 (50%)

Query:    37 LDPYHASHCIGK-CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRP 95
             LD    +HC    C    F C  S +CIP  W CDGD+DC  G DE    P+  C   R 
Sbjct:   135 LDGSDEAHCQATTCGPAHFRC-NSSICIPSLWACDGDVDCVDGSDEW---PQN-CQG-RD 188

Query:    96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143
              A     SP    +  C    +C+ +SW+CDGE DC D SDE +C +A
Sbjct:   189 TASKGVSSPCSSLEFHCGSS-ECIHRSWVCDGEADCKDKSDEEHCAVA 235

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISO;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=ISO

GO:0005768 "endosome" evidence=IDA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0005905 "coated pit" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IGI

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006897 "endocytosis" evidence=ISO

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IMP

GO:0010899 "regulation of phosphatidylcholine catabolic process" evidence=IMP

GO:0015914 "phospholipid transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030169 "low-density lipoprotein particle binding" evidence=IDA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=ISO;IDA

GO:0030299 "intestinal cholesterol absorption" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO;IMP

GO:0034362 "low-density lipoprotein particle" evidence=IEA

GO:0034383 "low-density lipoprotein particle clearance" evidence=ISO;IMP

GO:0042157 "lipoprotein metabolic process" evidence=IGI

GO:0042159 "lipoprotein catabolic process" evidence=IDA;IMP

GO:0042632 "cholesterol homeostasis" evidence=ISO;IGI;IMP

GO:0055038 "recycling endosome membrane" evidence=ISO

GO:0070508 "cholesterol import" evidence=IMP

UNIPROTKB|E9PC35 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK-CVPEKECPAVRPVACPQSDSPK 105
             G C   EF C    +CIP  W+CDG  DC  G DE   CVP K CP+          S  
Sbjct:  1091 GMCHSDEFQCQEDGICIPNFWECDGHPDCLYGSDEHNACVP-KTCPS----------SYF 1139

Query:   106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
              CD G       C+ ++WLCD ++DCGD SDE +C
Sbjct:  1140 HCDNG------NCIHRAWLCDRDNDCGDMSDEKDC 1168

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00020481 T13C2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 41/128 (32%), Positives = 62/128 (48%)

Query:    17 YTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCY 76
             + N+  +G E+       L   P + +  + +CP GE    GS  CIP  W+CD ++DC 
Sbjct:   182 FKNWVCDGEEDCSDGSDELLTAPSNCNRTVNQCPPGEMWKCGSGECIPSRWRCDAEVDCK 241

Query:    77 AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSD 136
                DE      K C A++   C      K+ ++  C     C+ K+++CDGE DC D SD
Sbjct:   242 DHSDE------KNCTAIQHT-C------KLAEEFACKASHNCINKAFVCDGELDCSDGSD 288

Query:   137 EVNCVLAR 144
             E +C   R
Sbjct:   289 EDDCADVR 296

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE-VKCVPEKECPAVRPVACPQSDSPK 105
             G C   EF C G   CIP  W+CDG  DC  G DE   CVP K C          S +  
Sbjct:  1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHTGCVP-KTC----------SPTHF 1277

Query:   106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             +CD G       C+ K+W+CDG++DC D SDE +C
Sbjct:  1278 LCDNG------NCIYKAWICDGDNDCRDMSDEKDC 1306

GO:0004872 "receptor activity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006766 "vitamin metabolic process" evidence=ISO;TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA;IMP

GO:0007568 "aging" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010165 "response to X-ray" evidence=IDA

GO:0010951 "negative regulation of endopeptidase activity" evidence=IC

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030900 "forebrain development" evidence=ISO

GO:0031100 "organ regeneration" evidence=IEP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042953 "lipoprotein transport" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045056 "transcytosis" evidence=IMP

GO:0045177 "apical part of cell" evidence=ISO

GO:0046879 "hormone secretion" evidence=IMP

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IPI

GO:0042954 "lipoprotein transporter activity" evidence=IMP

UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE-VKCVPEKECPAVRPVACPQSDSPK 105
             G C   EF C G   CIP  W+CDG  DC  G DE   CVP K C          S +  
Sbjct:  1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHTGCVP-KTC----------SPTHF 1277

Query:   106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             +CD G       C+ K+W+CDG++DC D SDE +C
Sbjct:  1278 LCDNG------NCIYKAWICDGDNDCRDMSDEKDC 1306

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 41/95 (43%), Positives = 48/95 (50%)

Query:    47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK-CVPEKECPAVRPVACPQSDSPK 105
             G C   EF C G   CIP  W+CDG  DC  G DE   CVP K C          S S  
Sbjct:  1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDCIQGSDEHNGCVP-KTC----------SPSHF 1277

Query:   106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             +CD G       C+  SW+CDG++DC D SDE +C
Sbjct:  1278 LCDNG------NCIYNSWVCDGDNDCRDMSDEKDC 1306

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=IMP

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010165 "response to X-ray" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042954 "lipoprotein transporter activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045056 "transcytosis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046879 "hormone secretion" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-05
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	2e-05
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	3e-05
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	0.001
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	0.003

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          CP  EF C  +  CIP  W CDG+ DC  G DE  C
Sbjct: 1  CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 17/24 (70%), Positives = 20/24 (83%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW+CDGEDDCGD SDE NC
Sbjct: 12  RCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW+CDG+ DC D SDE NC
Sbjct: 14  ECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81
           CP GEF C     CIP  W CDG  DC  G DE
Sbjct: 1  TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
            C   EF C GS  CIP  W CDGD DC  G DE  C
Sbjct: 1  STCGPDEFQC-GSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 117 KCLKKSWLCDGEDDCGDFSDE 137
           +C+  SW+CDG DDCGD SDE
Sbjct: 13  RCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.28
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.25
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.21
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.16
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.96
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.89
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.87
KOG1215|consensus	877		98.02
KOG1215|consensus	877		97.97
KOG2397|consensus	480		97.36
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	96.37
KOG3509|consensus	964		94.15
KOG2397|consensus	480		87.44

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.28  E-value=2.5e-12  Score=75.88  Aligned_cols=36  Identities=53%  Similarity=1.215  Sum_probs=33.7

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      .|.+.+|+|.++ .||+..|+|||+.||.||+||.+|
T Consensus         2 ~C~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSSTTEEEETTS-SEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcCCeeEcCCC-CEEChHHcCCCCCCCCCCcccccC
Confidence            488999999999 799999999999999999999876

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.25  E-value=3.8e-12  Score=74.21  Aligned_cols=35  Identities=51%  Similarity=1.241  Sum_probs=32.5

Q ss_pred             CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809          49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      |++.+|+|.++ +||+..|+|||+.||+|||||.+|
T Consensus         1 C~~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCCCeEEcCCC-CeeCHHHcCCCccCCCCCcccccC
Confidence            56789999997 999999999999999999999876

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.21  E-value=7.8e-12  Score=73.79  Aligned_cols=36  Identities=50%  Similarity=1.022  Sum_probs=33.0

Q ss_pred             CCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809          97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus        97 ~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      .|..  ++|+|      .++.||+..|+|||+.||.|||||.+|
T Consensus         2 ~C~~--~~f~C------~~~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPP--GEFRC------GNGQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSST--TEEEE------TTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcC--CeeEc------CCCCEEChHHcCCCCCCCCCCcccccC
Confidence            4777  99999      788899999999999999999999876

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.16  E-value=1.5e-11  Score=71.70  Aligned_cols=32  Identities=56%  Similarity=1.155  Sum_probs=30.4

Q ss_pred             CCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809         103 SPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus       103 ~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      ++|+|      .+++||+..++|||+.||+|||||.+|
T Consensus         4 ~~f~C------~~~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           4 NEFRC------ANGRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CeEEc------CCCCeeCHHHcCCCccCCCCCcccccC
Confidence            89999      779999999999999999999999976

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.96  E-value=4.6e-10  Score=64.46  Aligned_cols=32  Identities=56%  Similarity=1.234  Sum_probs=29.7

Q ss_pred             CCCCcEEeCCCCeEeeCccccCCcccCCCCCCC
Q psy5809          49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE   81 (160)
Q Consensus        49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE   81 (160)
                      |+..+|+|.++ .||+..++|||+.||.||+||
T Consensus         2 C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence            56679999988 899999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.89  E-value=2e-09  Score=83.68  Aligned_cols=69  Identities=33%  Similarity=0.478  Sum_probs=58.7

Q ss_pred             CCcEEeCCCCeE-eeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC---eEEeCccccC
Q psy5809          51 VGEFLCIGSCVC-IPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLF---KCLKKSWLCD  126 (160)
Q Consensus        51 ~~~f~C~~g~~C-I~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g---~CI~~~~~CD  126 (160)
                      .+.|.|.++..= |+..++.|++-||+|||||.+=           ..|+.  +.|+|     .+.|   .-|+.++|=|
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGT-----------sAC~~--~~FyC-----~N~g~~p~~i~~s~VnD   96 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGT-----------SACSN--GKFYC-----ENKGHIPRYIPSSRVND   96 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCcccc-----------ccCcC--ceEee-----ccCCCCCceeehhhhcC
Confidence            467999998666 9999999999999999999642           34766  89999     2333   5799999999


Q ss_pred             CCCC---CCCCCCC
Q psy5809         127 GEDD---CGDFSDE  137 (160)
Q Consensus       127 G~~D---C~DgsDE  137 (160)
                      |+-|   |-|||||
T Consensus        97 GICDy~~CCDGSDE  110 (176)
T PF12999_consen   97 GICDYDICCDGSDE  110 (176)
T ss_pred             CcCcccccCCCCCC
Confidence            9999   9999999

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.87  E-value=1.3e-09  Score=62.56  Aligned_cols=32  Identities=50%  Similarity=1.059  Sum_probs=29.2

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE  137 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE  137 (160)
                      |..  .+|+|      .++.||+..++|||+.||.|+|||
T Consensus         2 C~~--~~f~C------~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPP--GEFQC------DNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCC--CeEEC------CCCCEECchhhCCCcCcCcCCCCC
Confidence            555  68999      788999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215|consensus

Probab=98.02  E-value=4.1e-06  Score=78.82  Aligned_cols=82  Identities=34%  Similarity=0.703  Sum_probs=60.3

Q ss_pred             CCCCcEEeC--CCCeEeeCccccCCcccCCCCCCCCCCCCCC-CCCC---------------------CCCC-----CCC
Q psy5809          49 CPVGEFLCI--GSCVCIPQEWKCDGDLDCYAGEDEVKCVPEK-ECPA---------------------VRPV-----ACP   99 (160)
Q Consensus        49 C~~~~f~C~--~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~-~c~~---------------------~~~~-----~C~   99 (160)
                      |...+|+|.  +. +||+..|+||+..+|.+|+||.+|.... .+..                     ..+.     .+.
T Consensus       138 ~~~~~~~c~~~~~-~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~  216 (877)
T KOG1215|consen  138 CCLDKFSCRTGSC-KCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTD  216 (877)
T ss_pred             ccCCCCCCcCccc-cCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccC
Confidence            667899999  55 9999999999999999999999986221 0000                     0000     011


Q ss_pred             ---CCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCC
Q psy5809         100 ---QSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEV  138 (160)
Q Consensus       100 ---~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~  138 (160)
                         .  ..++|     ....+||...++|||..||.+++||.
T Consensus       217 ~~~~--~~~~c-----~g~~~~i~~~~~~Dg~~dc~~~~de~  251 (877)
T KOG1215|consen  217 DSRI--EVTRC-----DGSSRCILISEVCDGPRDCVDGPDEG  251 (877)
T ss_pred             Ccce--eEEEe-----cCCCcEEeehhccCCCcccccCCcCc
Confidence               2  45666     23358999999999999999999984

>KOG1215|consensus

Probab=97.97  E-value=8.7e-06  Score=76.65  Aligned_cols=78  Identities=35%  Similarity=0.585  Sum_probs=67.2

Q ss_pred             CCcEEeCCCCeEeeCccccCCcccCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCC
Q psy5809          51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEV--KCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE  128 (160)
Q Consensus        51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~--~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~  128 (160)
                      ...++|..++.||...+.|||..||.+++||.  +|..         ..|..  .++.|      ..+.|++..++|||.
T Consensus       220 ~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~---------~~~~~--~e~~~------~~~~~~~~~~~~~g~  282 (877)
T KOG1215|consen  220 IEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSD---------ATCEA--PEIEC------ADGDCSDRQKLCDGD  282 (877)
T ss_pred             eeEEEecCCCcEEeehhccCCCcccccCCcCceeEeec---------cccCC--cceee------cCCCCccceEEecCc
Confidence            46789988679999999999999999999994  5654         45666  78999      889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCc
Q psy5809         129 DDCGDFSDEVNCVLARK  145 (160)
Q Consensus       129 ~DC~DgsDE~~C~~~~~  145 (160)
                      .||+||+||.+|.....
T Consensus       283 ~d~pdg~de~~~~~~~~  299 (877)
T KOG1215|consen  283 LDCPDGLDEDYCKKKLY  299 (877)
T ss_pred             cCCCCccccccccccee
Confidence            99999999998875443

>KOG2397|consensus

Probab=97.36  E-value=0.00021  Score=62.97  Aligned_cols=75  Identities=31%  Similarity=0.405  Sum_probs=61.4

Q ss_pred             CCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCC
Q psy5809          51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDD  130 (160)
Q Consensus        51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~D  130 (160)
                      ...|.|.++.+=|+..++-|..-||.||+||..=           ..|+.  +.|+|.++  +-...-|+.+.|=||+-|
T Consensus        42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt-----------sACpn--gkF~C~N~--G~~p~~i~ssrV~DGICD  106 (480)
T KOG2397|consen   42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT-----------SACPN--GKFYCVNQ--GHQPKYIPSSRVNDGICD  106 (480)
T ss_pred             ccceeeccCCcccCHHHhccccccCCCCCCCCcc-----------ccCCC--Cceeeeec--CCCceeeechhccCcccc
Confidence            3589999999999999999999999999999431           45777  89999321  122357999999999999


Q ss_pred             CCCCCCCCCC
Q psy5809         131 CGDFSDEVNC  140 (160)
Q Consensus       131 C~DgsDE~~C  140 (160)
                      |-|||||..=
T Consensus       107 CCDgSDE~~S  116 (480)
T KOG2397|consen  107 CCDGSDEYLS  116 (480)
T ss_pred             cccCCCCccC
Confidence            9999999754

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=96.37  E-value=0.0036  Score=48.86  Aligned_cols=43  Identities=33%  Similarity=0.565  Sum_probs=37.1

Q ss_pred             CCCCCCcCCCCCCCCcEEeCCCC---eEeeCccccCCccc---CCCCCCC
Q psy5809          38 DPYHASHCIGKCPVGEFLCIGSC---VCIPQEWKCDGDLD---CYAGEDE   81 (160)
Q Consensus        38 d~~de~~C~~~C~~~~f~C~~g~---~CI~~~~~CDg~~D---C~dgsDE   81 (160)
                      ||+||..= ..|+.+.|.|.|.+   .-||..+|=||+-|   |=|||||
T Consensus        62 DGSDEPGT-sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE  110 (176)
T PF12999_consen   62 DGSDEPGT-SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE  110 (176)
T ss_pred             CCCCcccc-ccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence            88888542 23878899999875   78999999999999   9999999

>KOG3509|consensus

Probab=94.15  E-value=0.073  Score=51.08  Aligned_cols=80  Identities=31%  Similarity=0.662  Sum_probs=65.6

Q ss_pred             CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCC
Q psy5809          49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE  128 (160)
Q Consensus        49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~  128 (160)
                      +.+.++.|.++ ++....|.||....+..++++.+|...     .....|.+  ..+.|     ...-++.+++..|||.
T Consensus        32 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~--~~~~c-----~~~~~~~~~~~~~~g~   98 (964)
T KOG3509|consen   32 CSPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAK-----PSASDCKP--TETQC-----RDRLRCNPQSFQCDGT   98 (964)
T ss_pred             CCcchhccCCc-cccCchhhhccccccCCCCCcCCcccc-----ccccccCC--ccccc-----ccchhcCCccccccCC
Confidence            77899999999 999999999999999999988777642     22345666  77888     3445788899999999


Q ss_pred             CCCCCCCCCCCCC
Q psy5809         129 DDCGDFSDEVNCV  141 (160)
Q Consensus       129 ~DC~DgsDE~~C~  141 (160)
                      +||.++++|..+-
T Consensus        99 ~~~~~~~~~~~~~  111 (964)
T KOG3509|consen   99 NDCKDGSDEVGCK  111 (964)
T ss_pred             CCCCccchhcccc
Confidence            9999999998653

>KOG2397|consensus

Probab=87.44  E-value=0.65  Score=41.45  Aligned_cols=46  Identities=35%  Similarity=0.631  Sum_probs=37.7

Q ss_pred             cCCCCCCcCCCCCCCCcEEeCCCC---eEeeCccccCCcccCCCCCCCCC
Q psy5809          37 LDPYHASHCIGKCPVGEFLCIGSC---VCIPQEWKCDGDLDCYAGEDEVK   83 (160)
Q Consensus        37 ~d~~de~~C~~~C~~~~f~C~~g~---~CI~~~~~CDg~~DC~dgsDE~~   83 (160)
                      .||+||..= ..|+.+.|.|.|.+   .-|+.+.+=||+-||-|||||..
T Consensus        67 ~DGsDEPGt-sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   67 LDGSDEPGT-SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             CCCCCCCcc-ccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence            378777321 23999999999754   79999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		4e-07
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		5e-07
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		2e-06
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		5e-05

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 49  CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
           C  G+F C G    CIPQ W+CDG +DC  G DE  C P+          C Q +    C
Sbjct: 65  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPK---------TCSQDEF--RC 113
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             G      KC+ + ++CD + DC D SDE +C
Sbjct: 114 HDG------KCISRQFVCDSDRDCLDGSDEASC 140

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 49  CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
           C  G+F C G    CIPQ W+CDG +DC  G DE  C P+          C Q +    C
Sbjct: 47  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPK---------TCSQDEF--RC 95
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             G      KC+ + ++CD + DC D SDE +C
Sbjct: 96  HDG------KCISRQFVCDSDRDCLDGSDEASC 122

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 48  KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
            C    F C  S  CIPQ W CD D DC  G DE    P++     R +   Q DS    
Sbjct: 6   TCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEW---PQR----CRGLYVFQGDSSPCS 57
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143
              F     +C+  SW CDG  DC D SDE NC +A
Sbjct: 58  AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 93

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 48  KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
            CP  +F C  S  CIP  W CD D DC    DE        C  +    C         
Sbjct: 4   TCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG------ 56
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    +C+  +W CD ++DCGD SDE  C
Sbjct: 57  ---------RCININWRCDNDNDCGDNSDEAGC 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-16
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	8e-14
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-10
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	5e-09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-10
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-10
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	8e-09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-07
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-08
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-08
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	4e-08
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	5e-05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	6e-08
1cr8_A	42	Protein (LOW density lipoprotein receptor related	1e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	2e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	2e-05
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	8e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	6e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	9e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	9e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	1e-06
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	6e-05
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	2e-06
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	6e-04
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	2e-06
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	4e-05
3a7q_B	44	Low-density lipoprotein receptor-related protein;	4e-06
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-05
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	7e-06
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	5e-05
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	7e-06
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-05
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	1e-05
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	1e-05
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	8e-04

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 67.7 bits (166), Expect = 4e-16
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 49  CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
           CP  +F C  S  CIP  W CD D DC    DE        C        P +     C+
Sbjct: 5   CPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTC-------FPLTQFT--CN 54

Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            G      +C+  +W CD ++DCGD SDE  C
Sbjct: 55  NG------RCININWRCDNDNDCGDNSDEAGC 80

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 61.9 bits (151), Expect = 8e-14
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 49  CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
           C   EF C     CI +++ CD D DC  G DE  C P   C            +   C+
Sbjct: 3   CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASC-PVLTCG----------PASFQCN 50

Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                    C+ + W CD + DC D SDE   
Sbjct: 51  SS------TCIPQLWACDNDPDCEDGSDEWPQ 76

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 64.1 bits (155), Expect = 8e-13
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 45  CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
              +C   EF C     CI  +W CDG  +C  G DE +            V C   D  
Sbjct: 20  VGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCL-------SVTCKSGD-- 69

Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
             C         +C+ + W CDG+ DC + SDE  C
Sbjct: 70  FSCGGRVN----RCIPQFWRCDGQVDCDNGSDEQGC 101

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 57.9 bits (139), Expect = 9e-11
 Identities = 36/94 (38%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 47  GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106
             C    F C  S  CIPQ W CD D DC  G DE            R +   Q DS   
Sbjct: 143 LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC-------RGLYVFQGDSSPC 194

Query: 107 CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
               F     +C+  SW CDG  DC D SDE NC
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 228

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 49  CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
           C  G+F C G    CIPQ W+CDG +DC  G DE  C P K C                 
Sbjct: 65  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC-PPKTCS---------------- 107

Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
              F     KC+ + ++CD + DC D SDE +C
Sbjct: 108 QDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 140

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 53.3 bits (127), Expect = 5e-09
 Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 49  CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
           C   EF C     CI    +CD + DC    DEV CV    C       C          
Sbjct: 233 CRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG------- 284

Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                   +C+    +C+   DC D+SDE   
Sbjct: 285 --------ECITLDKVCNMARDCRDWSDEPIK 308

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 32/102 (31%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 39  PYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC 98
            Y        C   EF C  S  CI   W+CDG  DC    DE  C     C        
Sbjct: 184 LYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC-AVATCRP------ 235

Query: 99  PQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                       F      C+  S  CD E DC D SDEV C
Sbjct: 236 ----------DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 38  DPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVA 97
           D     +        +F C  S  CI  +  C+   DC    DE                
Sbjct: 263 DEVGCVNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 321

Query: 98  CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           C    +          P    L     C+  D+C D       
Sbjct: 322 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 364

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 48  KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
           +C   EF C     CI  +W CDG  +C  G DE +             +C         
Sbjct: 5   RCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC--------- 54

Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                  + +C+ + W CDG+ DC + SDE  C
Sbjct: 55  ----GGRVNRCIPQFWRCDGQVDCDNGSDEQGC 83

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 56.0 bits (134), Expect = 6e-10
 Identities = 36/96 (37%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 45  CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
            +  C    F C  S  CIPQ W CD D DC  G DE            R +   Q DS 
Sbjct: 123 PVLTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC-------RGLYVFQGDSS 174

Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                 F     +C+  SW CDG  DC D SDE NC
Sbjct: 175 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 210

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 55.2 bits (132), Expect = 9e-10
 Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 49  CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
           C  G+F C G    CIPQ W+CDG +DC  G DE  C P K C                 
Sbjct: 47  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC-PPKTCS---------------- 89

Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
              F     KC+ + ++CD + DC D SDE +C
Sbjct: 90  QDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 122

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 44  HCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDS 103
             +  C   EF C     CI    +CD + DC    DEV CV    C       C     
Sbjct: 210 CAVATCRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG-- 266

Query: 104 PKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
                        +C+    +C+   DC D+SDE   
Sbjct: 267 -------------ECITLDKVCNMARDCRDWSDEPIK 290

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 52.5 bits (125), Expect = 8e-09
 Identities = 31/103 (30%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 39  PYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC 98
            Y        C   EF C+    CI   W+CDG  DC    DE  C              
Sbjct: 166 LYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC-------------- 210

Query: 99  PQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
                       F      C+  S  CD E DC D SDEV CV
Sbjct: 211 ---AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 250

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 18/112 (16%), Positives = 27/112 (24%), Gaps = 1/112 (0%)

Query: 38  DPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVA 97
           D     +        +F C  S  CI  +  C+   DC    DE                
Sbjct: 245 DEVGCVNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 303

Query: 98  CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDT 149
           C    +          P    L     C+  D+C D        +  +    
Sbjct: 304 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 355

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 18/80 (22%)

Query: 62  CIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKK 121
           C   + +  G  D        +             A    D    C  G           
Sbjct: 178 CTFTKRRTMGYQDFADVVCYTQK------------ADSPMDDFFQCVNGKYISQ------ 219

Query: 122 SWLCDGEDDCGDFSDEVNCV 141
              CDG +DCGD SDE+ C 
Sbjct: 220 MKACDGINDCGDQSDELCCK 239

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 19/93 (20%)

Query: 48  KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
             P+ +F    +   I Q   CDG  DC    DE+ C                       
Sbjct: 202 DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCK-------------------ACQ 242

Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
            KGF      C+   + C+GE DC    DEV C
Sbjct: 243 GKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 46.2 bits (110), Expect = 4e-08
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C    F C G+ VC+P+ W CDGD DC  G DE   
Sbjct: 7  CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           CP    C+ + WLCDG+ DC D +DE   
Sbjct: 14  CPGTHVCVPERWLCDGDKDCADGADESIA 42

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 45.7 bits (109), Expect = 6e-08
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   EF C    +CIP  W+CDGD DC    DE  C
Sbjct: 4  CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 104 PKMCDKG--FCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           P  C      C     C+   W CDG+ DC D SDE +C
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          KC +G F C     C+PQ   C+G  DC    DE  C
Sbjct: 6  KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 107 CDKGF--CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           C  G+  C  + KCL +   C+G DDCG+ +DE NC
Sbjct: 7   CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 42.7 bits (101), Expect = 8e-07
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86
           +  C   +F C     CI   ++CDG  DC    DE  C  
Sbjct: 3  MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 37.7 bits (88), Expect = 6e-05
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
            C+   + CDG  DC D SDE  C
Sbjct: 19  SCINSRYRCDGVYDCRDNSDEAGC 42

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 42.3 bits (100), Expect = 9e-07
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C + E  C   S  CIP  W+CDG+ DC +GEDE  C
Sbjct: 1  CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 36.9 bits (86), Expect = 9e-05
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW CDGE+DC    DE NC
Sbjct: 14  QCIPVSWRCDGENDCDSGEDEENC 37

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 47 GKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          G CP G+F C         C PQ+W CDG  DC  G DE  C
Sbjct: 5  GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C  + WLCDG  DC D  DE  C
Sbjct: 23  ECYPQDWLCDGHPDCDDGRDEWGC 46

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86
          C    F C G+ VC+P+ W CDGD DC  G DE     
Sbjct: 9  CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           CP    C+ + WLCDG+ DC D +DE   
Sbjct: 16  CPGTHVCVPERWLCDGDKDCADGADESIA 44

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 48 KCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          +CP G+F C         C PQ+W CDG  DC  G DE  C
Sbjct: 4  RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 38.2 bits (89), Expect = 4e-05
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C  + WLCDG  DC D  DE  C
Sbjct: 21  ECYPQDWLCDGHPDCDDGRDEWGC 44

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 40.7 bits (96), Expect = 4e-06
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+   W CD +DDC D SDE +C
Sbjct: 19  RCIPSVWRCDEDDDCLDHSDEDDC 42

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 42 ASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
           S    +C   +F C  +  CIP  W+CD D DC    DE  C
Sbjct: 1  GSGPAKECEKDQFQC-RNERCIPSVWRCDEDDDCLDHSDEDDC 42

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+ + W CDG++DCGD+SDE + 
Sbjct: 16  RCIPEHWTCDGDNDCGDYSDETHA 39

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   +F C  S  CIP+ W CDGD DC    DE   
Sbjct: 5  CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHA 39

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
           +C+++ W CDG++DC D SDE   +
Sbjct: 17  RCIQERWKCDGDNDCLDNSDEAPAL 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
             +C  GEF C  +  CI + WKCDGD DC    DE   +
Sbjct: 2  SPPQCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW CDG  DC D SDE NC
Sbjct: 13  ECIHSSWRCDGGPDCKDKSDEENC 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   EF C  S  CI   W+CDG  DC    DE  C
Sbjct: 2  CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC 36

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 59  SCVCIPQE--WKCDGDL-DCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPL 115
           S +   +     C GD+ D  +      CV + +C                     C   
Sbjct: 32  SLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQC----------------GQDFQCKET 75

Query: 116 FKCLKKSWLCDGEDDCGDFSDEVNC 140
            +CLK+  +C+G+ DC D SDE +C
Sbjct: 76  GRCLKRHLVCNGDQDCLDGSDEDDC 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.9
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.71
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.54
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.39
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.34
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.33
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.3
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.3
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.29
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.29
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.28
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.27
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.27
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.27
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.26
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.24
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.24
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.24
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.23
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.23
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.22
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.2
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.19
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.19
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.15
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.15
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.14
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.14
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.14
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.12
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.09
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.08
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.99
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.78
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.77
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.76
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.73
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.65
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.6
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.57
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.44
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.28
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.85
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.5

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.90  E-value=3.1e-24  Score=146.88  Aligned_cols=76  Identities=39%  Similarity=0.924  Sum_probs=69.6

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCccCCCCCCCCCCeEEeCcccc
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE-VKCVPEKECPAVRPVACP-QSDSPKMCDKGFCPPLFKCLKKSWLC  125 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE-~~C~~~~~c~~~~~~~C~-~~~~~f~C~~~~~~~~g~CI~~~~~C  125 (160)
                      .|.+.+|+|.+| +||+..|+|||+.||.||||| .+|..         ..|. .  .+|+|      .+|+||+..|+|
T Consensus         4 ~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~---------~~C~~~--~~f~C------~~g~CI~~~~~C   65 (82)
T 2fyj_A            4 TCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAY---------PTCFPL--TQFTC------NNGRCININWRC   65 (82)
T ss_dssp             SSCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCC---------SSSCSS--SEEEC------TTSCEEETTCBS
T ss_pred             CCCCCceEeCCC-CEEeccccCCCcccCCCcccccccccc---------ccCCCC--CceEC------CCCCeEcHHHcc
Confidence            488999999998 999999999999999999999 88974         4574 4  79999      789999999999


Q ss_pred             CCCCCCCCCCCCCCCC
Q psy5809         126 DGEDDCGDFSDEVNCV  141 (160)
Q Consensus       126 DG~~DC~DgsDE~~C~  141 (160)
                      ||+.||.|||||.+|.
T Consensus        66 DG~~DC~DgSDE~~C~   81 (82)
T 2fyj_A           66 DNDNDCGDNSDEAGCS   81 (82)
T ss_dssp             SSSBCCSSSSSCSCCC
T ss_pred             CCCCcCCCCccccCCC
Confidence            9999999999999995

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.89  E-value=2.2e-24  Score=147.04  Aligned_cols=76  Identities=37%  Similarity=0.878  Sum_probs=69.1

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDG  127 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG  127 (160)
                      .|++.+|+|.+| +||+..|+|||+.||.|||||.+|..         ..|..  .+|+|      .+++||+..|+|||
T Consensus         2 ~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~---------~~C~~--~~f~C------~~g~Ci~~~~~CDg   63 (80)
T 2fcw_B            2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NSSTCIPQLWACDN   63 (80)
T ss_dssp             CCCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHH---------HHCCT--TEEEC------TTSCEEEGGGTTSS
T ss_pred             CCCCCccCCCCC-CEEeeecccCCcccCCCccccccccc---------ccCCc--eeeEC------CCCCEEecccccCC
Confidence            378899999998 99999999999999999999999863         35887  89999      78999999999999


Q ss_pred             CCCCCCCCCC--CCCC
Q psy5809         128 EDDCGDFSDE--VNCV  141 (160)
Q Consensus       128 ~~DC~DgsDE--~~C~  141 (160)
                      +.||.|||||  .+|.
T Consensus        64 ~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B           64 DPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             SCCSTTCGGGCGGGC-
T ss_pred             CcCCCCCCCcCcccCC
Confidence            9999999999  6774

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.79  E-value=1.9e-19  Score=162.73  Aligned_cols=87  Identities=33%  Similarity=0.769  Sum_probs=76.8

Q ss_pred             CCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC
Q psy5809          38 DPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLF  116 (160)
Q Consensus        38 d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g  116 (160)
                      |++||.+|.. .|.+.+|+|.++ +||+..|+|||+.||.|||||.+|..         ..|.+  .+|+|      .++
T Consensus        76 dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~---------~~C~~--~~f~C------~~~  137 (699)
T 1n7d_A           76 NGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NSS  137 (699)
T ss_dssp             CCCTTTSCSSCCCCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCC---------CCCCS--SCCCC------SSS
T ss_pred             CCcccCcccccccccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCc---------cccCc--cccCC------CCC
Confidence            8899999974 599999999998 99999999999999999999999975         56988  99999      889


Q ss_pred             eEEeCccccCCCCCCCCCCCC--CCCCC
Q psy5809         117 KCLKKSWLCDGEDDCGDFSDE--VNCVL  142 (160)
Q Consensus       117 ~CI~~~~~CDG~~DC~DgsDE--~~C~~  142 (160)
                      +||+..|+|||+.||.|||||  .+|..
T Consensus       138 ~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~  165 (699)
T 1n7d_A          138 TCIPQLWACDNDPDCEDGSDEWPQRCRG  165 (699)
T ss_dssp             CCCCTTSTTCSSCCSSSSSSSSCSSSSC
T ss_pred             cccchhcccCCCCcCCCCcccccccCCC
Confidence            999999999999999999999  89964

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.75  E-value=1.8e-18  Score=156.49  Aligned_cols=89  Identities=38%  Similarity=0.805  Sum_probs=81.3

Q ss_pred             CCCCC--CcCCC---------CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy5809          38 DPYHA--SHCIG---------KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM  106 (160)
Q Consensus        38 d~~de--~~C~~---------~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~  106 (160)
                      |++||  .+|..         .|.+.+|+|.+| +||+..|+|||+.||.||+||.+|..         ..|..  ++|+
T Consensus       154 dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~---------~~C~~--~~f~  221 (699)
T 1n7d_A          154 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCAV---------ATCRP--DEFQ  221 (699)
T ss_dssp             SSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS-CCCSTTCTTSSSCCSTTSCSSCSCCC---------CCCCS--SEEE
T ss_pred             CCcccccccCCCcccccCCCCCCCCcceecCCC-ceEechhccCCCCCCCCCcccccCCC---------cccCC--CcEe
Confidence            89999  88853         599999999998 99999999999999999999999974         46888  8999


Q ss_pred             CCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCCC
Q psy5809         107 CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLAR  144 (160)
Q Consensus       107 C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~~  144 (160)
                      |      .+++||+.+|+|||..||.|+|||.+|....
T Consensus       222 C------~~g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~  253 (699)
T 1n7d_A          222 C------SDGNCIHGSRQCDREYDCKDMSDEVGCVNVT  253 (699)
T ss_dssp             S------SSSCEEETTCCSSSCCCSSSSCSSSSTTCCC
T ss_pred             c------CCCceeeeecccCCCCCCCCCCccCCCCCCC
Confidence            9      7899999999999999999999999996543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.74  E-value=1.4e-19  Score=166.14  Aligned_cols=101  Identities=39%  Similarity=0.876  Sum_probs=0.0

Q ss_pred             CCCceEEEEEec--------CCCCCCc--CCC-CCCCCcEEeCCC-CeEeeCccccCCcccCCCCCCCCCCCCCCCCCCC
Q psy5809          26 ENSDFCIIFLFL--------DPYHASH--CIG-KCPVGEFLCIGS-CVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAV   93 (160)
Q Consensus        26 ~~~g~~~~~~~~--------d~~de~~--C~~-~C~~~~f~C~~g-~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~   93 (160)
                      ...|.+|....+        |++||..  |.. .|.+.+|+|.++ ++|||..|+|||+.||.||+||.+|..       
T Consensus        31 C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~-------  103 (791)
T 3m0c_C           31 CQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPP-------  103 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCCccC-------
Confidence            345677766443        8999987  643 499999999982 399999999999999999999999975       


Q ss_pred             CCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809          94 RPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA  143 (160)
Q Consensus        94 ~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~  143 (160)
                        ..|..  ++|+|      .+|+||+..|+|||+.||.|||||.+|...
T Consensus       104 --~~C~~--~~f~C------~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~  143 (791)
T 3m0c_C          104 --KTCSQ--DEFRC------HDGKCISRQFVCDSDRDCLDGSDEASCPVL  143 (791)
T ss_dssp             --------------------------------------------------
T ss_pred             --ccccC--CeEEC------CCCCEECHHHcCCCcccCCCCccccccccc
Confidence              46888  99999      889999999999999999999999999643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.71  E-value=5.8e-19  Score=162.14  Aligned_cols=87  Identities=33%  Similarity=0.766  Sum_probs=0.0

Q ss_pred             cCCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q psy5809          37 LDPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPL  115 (160)
Q Consensus        37 ~d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~  115 (160)
                      .|++||.+|.. .|.+.+|+|.+| +||+..|+|||+.||.||+||.+|..         ..|..  .+|+|      .+
T Consensus        93 ~dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~---------~~C~~--~~f~C------~~  154 (791)
T 3m0c_C           93 DNGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NS  154 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccCCccCccccCCeEECCCC-CEECHHHcCCCcccCCCCcccccccc---------ccccc--ceecc------CC
Confidence            38999999975 599999999998 99999999999999999999999975         46988  99999      88


Q ss_pred             CeEEeCccccCCCCCCCCCCCCC--CCC
Q psy5809         116 FKCLKKSWLCDGEDDCGDFSDEV--NCV  141 (160)
Q Consensus       116 g~CI~~~~~CDG~~DC~DgsDE~--~C~  141 (160)
                      ++||+..|+|||..||.|||||.  +|.
T Consensus       155 ~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~  182 (791)
T 3m0c_C          155 STCIPQLWACDNDPDCEDGSDEWPQRCR  182 (791)
T ss_dssp             ----------------------------
T ss_pred             CccccccccCCCCCcCCCCCCcccccCC
Confidence            99999999999999999999997  674

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.54  E-value=3.6e-15  Score=132.27  Aligned_cols=73  Identities=33%  Similarity=0.571  Sum_probs=64.7

Q ss_pred             CCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCC
Q psy5809          51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDD  130 (160)
Q Consensus        51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~D  130 (160)
                      ..+|+|.++ .||+..|+|||+.||.|++||.+|..           |+.  .+|+|      ..+.||+..++|||..|
T Consensus       206 ~~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~-----------c~~--~~~~C------~~~~C~~~~~~cdG~~d  265 (565)
T 2xrc_A          206 DDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKA-----------CQG--KGFHC------KSGVCIPSQYQCNGEVD  265 (565)
T ss_dssp             ---CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSS-----------CSS--SCEEE------TTTEEECGGGTTSSSCC
T ss_pred             cCeeECCCC-CccCHHHcCCCcccCCCCcccccccc-----------cCC--Cceec------CCCcccCccccCCCccc
Confidence            345999988 99999999999999999999999963           888  89999      88899999999999999


Q ss_pred             CCCCCCCCCCCCC
Q psy5809         131 CGDFSDEVNCVLA  143 (160)
Q Consensus       131 C~DgsDE~~C~~~  143 (160)
                      |.||+||.+|...
T Consensus       266 C~~gsDE~~C~~~  278 (565)
T 2xrc_A          266 CITGEDEVGCAGF  278 (565)
T ss_dssp             SSSCTTSSSCC--
T ss_pred             CCCCccccCcCCc
Confidence            9999999999753

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.39  E-value=8.1e-15  Score=116.07  Aligned_cols=92  Identities=25%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             CCCCCCcCCCCCCCCcEEe--CCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC-------
Q psy5809          38 DPYHASHCIGKCPVGEFLC--IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD-------  108 (160)
Q Consensus        38 d~~de~~C~~~C~~~~f~C--~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~-------  108 (160)
                      +++||.+|. .|++.+|+|  .+| +|||..|+|||..||.|||||.+|..         ..|..  .+|+|.       
T Consensus        45 d~sDE~~C~-~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~---------~~C~~--~~F~c~~~~~~C~  111 (215)
T 2gtl_O           45 HRVEELEDP-SCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTL---------PTKAG--DKFIGDVCFDHCT  111 (215)
T ss_dssp             HHHHHHSCC-SSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCC---------SSCTT--CEEEEEEEEESSC
T ss_pred             cchhhccCC-CCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCC---------CCcCC--CceeeeECCCccc
Confidence            678899994 599999999  566 99999999999999999999999975         23433  344331       


Q ss_pred             CC-----------------CCCCC--CeEEe-----------CccccCCCCCCCCCCCCCCCCCCC
Q psy5809         109 KG-----------------FCPPL--FKCLK-----------KSWLCDGEDDCGDFSDEVNCVLAR  144 (160)
Q Consensus       109 ~~-----------------~~~~~--g~CI~-----------~~~~CDG~~DC~DgsDE~~C~~~~  144 (160)
                      .+                 +|...  ..||.           .+|.|||+.|  ++++|+.|.++.
T Consensus       112 ~~~~~~~c~~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~pp~  175 (215)
T 2gtl_O          112 KRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHPPE  175 (215)
T ss_dssp             SSCCSEEEEEEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECCSS
T ss_pred             CCCCCCceeeeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceeeecCCC
Confidence            00                 01121  24777           8899999999  699999886544

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.34  E-value=5.8e-13  Score=77.66  Aligned_cols=36  Identities=42%  Similarity=1.043  Sum_probs=33.9

Q ss_pred             CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      |.+.+|+|.+| +||+..|+|||+.||.|||||.+|.
T Consensus         2 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~   37 (37)
T 1ajj_A            2 CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCceEcCCC-CeechhhccCCCCCCCCCccccCCC
Confidence            77899999998 9999999999999999999999884

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.33  E-value=1.1e-12  Score=78.57  Aligned_cols=39  Identities=44%  Similarity=1.020  Sum_probs=35.0

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      .|...+|+|.+.++||+..|+|||+.||.|||||.+|..
T Consensus         3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~   41 (42)
T 1cr8_A            3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence            488899999864499999999999999999999999863

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=77.83  Aligned_cols=39  Identities=38%  Similarity=0.735  Sum_probs=35.0

Q ss_pred             CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      ..|+..+|+|.++++||+..|+|||+.||.|||||.+|.
T Consensus         5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (43)
T 2jm4_A            5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG   43 (43)
T ss_dssp             CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred             CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence            348889999999339999999999999999999999884

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.30  E-value=5e-13  Score=90.71  Aligned_cols=63  Identities=32%  Similarity=0.570  Sum_probs=50.7

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC--CeEEeCc
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK---CVPEKECPAVRPVACPQSDSPKMCDKGFCPPL--FKCLKKS  122 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~---C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~--g~CI~~~  122 (160)
                      .|++.+|+|.+.+.|||..|+|||+.||.|||||..   |..        ...|..  .+|+|      .+  +.||+..
T Consensus         8 ~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~--------~~~C~~--~~f~c------~~~~~~ci~~~   71 (80)
T 2kny_A            8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLY--------NSTGSG--SGSGS------TEELRVRLASH   71 (80)
T ss_dssp             CCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSS--------SSTTTT--CSSCH------HHHHHHHTTTT
T ss_pred             CCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCC--------CcccCc--ccchh------hhHHHHHHHHH
Confidence            488999999854499999999999999999999985   542        156888  89999      55  5777776


Q ss_pred             cccC
Q psy5809         123 WLCD  126 (160)
Q Consensus       123 ~~CD  126 (160)
                      +...
T Consensus        72 ~~gL   75 (80)
T 2kny_A           72 LRKL   75 (80)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            5543

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.29  E-value=2.5e-12  Score=76.99  Aligned_cols=40  Identities=35%  Similarity=0.656  Sum_probs=34.9

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL  142 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~  142 (160)
                      ..|..  ++|+|     ..+++||+..|+|||+.||.|||||.+|..
T Consensus         2 ~~C~~--~~F~C-----~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~   41 (42)
T 1cr8_A            2 GGCHT--DEFQC-----RLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CCSST--TCEEC-----TTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCC--CceEe-----CCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence            35777  89999     236899999999999999999999999963

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.29  E-value=9.6e-13  Score=80.99  Aligned_cols=43  Identities=30%  Similarity=0.771  Sum_probs=38.5

Q ss_pred             cCCCCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          44 HCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        44 ~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      +|...|.+.+|+|.++.+||+..|+|||+.||.|||||.+|..
T Consensus         2 ~C~~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~   44 (48)
T 2i1p_A            2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT   44 (48)
T ss_dssp             CSCCCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred             CCCCCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence            3555688999999988689999999999999999999999974

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.28  E-value=2.3e-12  Score=77.87  Aligned_cols=37  Identities=41%  Similarity=0.991  Sum_probs=33.8

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|...+|+|.++ +||+..|+|||+.||.|||||.+|.
T Consensus         7 ~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            7 ECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             -CCTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCCceEcCCC-CEeChhhccCCCCCCCCCccccCCC
Confidence            488899999998 9999999999999999999999885

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.27  E-value=2.1e-12  Score=75.31  Aligned_cols=36  Identities=44%  Similarity=0.906  Sum_probs=33.2

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      |..  ++|+|      .+|+||+..|+|||+.||.|||||.+|+
T Consensus         2 C~~--~~f~C------~~g~Ci~~~~~CDg~~DC~DgsDE~~C~   37 (37)
T 1ajj_A            2 CSA--FEFHC------LSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCT--TCEEC------TTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCC--CceEc------CCCCeechhhccCCCCCCCCCccccCCC
Confidence            555  89999      7899999999999999999999999984

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.27  E-value=3.2e-12  Score=77.66  Aligned_cols=37  Identities=49%  Similarity=1.118  Sum_probs=34.5

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|.+.+|+|.++ +||+..|+|||+.||.|||||..|.
T Consensus         5 ~C~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c~   41 (45)
T 1d2l_A            5 QCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPAL   41 (45)
T ss_dssp             BTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred             cCCCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCCc
Confidence            488899999998 9999999999999999999999874

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.27  E-value=1.7e-12  Score=76.53  Aligned_cols=37  Identities=49%  Similarity=1.114  Sum_probs=33.6

Q ss_pred             CCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          49 CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        49 C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      |++.+|+|.+ .++|||..|+|||+.||.|||||.+|.
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            5688999998 249999999999999999999999985

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=76.45  Aligned_cols=38  Identities=42%  Similarity=0.776  Sum_probs=34.5

Q ss_pred             CCCCCCCCCccCCCCCCCCC-CeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPL-FKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~-g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|+.  ++|+|      .+ ++||++.|+|||+.||.|||||.+|.
T Consensus         5 ~~C~~--~~f~C------~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (43)
T 2jm4_A            5 VKCSL--GYFPC------GNITKCLPQLLHCNGVDDCGNQADEDNCG   43 (43)
T ss_dssp             CSCCT--TEEEC------SSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred             CCCCC--CeeEC------CCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence            56877  89999      66 89999999999999999999999984

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.24  E-value=1.7e-12  Score=81.18  Aligned_cols=39  Identities=36%  Similarity=0.864  Sum_probs=36.0

Q ss_pred             CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      ..|++.+|+|.+| +||+..|+|||+.||.|||||.+|..
T Consensus         5 ~~C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~~~   43 (52)
T 2m0p_A            5 ASCLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNCNS   43 (52)
T ss_dssp             CSSCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred             CCCCCCceECCCC-CEEecCccCCCCCCCCCCCccccchh
Confidence            4588999999998 99999999999999999999999864

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.24  E-value=2.6e-12  Score=78.68  Aligned_cols=37  Identities=49%  Similarity=1.143  Sum_probs=33.8

Q ss_pred             CCCCCcEEeC-----CCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCI-----GSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~-----~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|.+.+|+|.     ++ +||+..|+|||+.||.|||||.+|.
T Consensus         6 ~C~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~   47 (47)
T 1k7b_A            6 SCPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGCG   47 (47)
T ss_dssp             CCSTTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCCC
Confidence            4889999998     55 9999999999999999999999873

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.24  E-value=4e-12  Score=76.84  Aligned_cols=38  Identities=37%  Similarity=0.848  Sum_probs=33.5

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|..  .+|+|      .+++||+..|+|||+.||.|||||.+|.
T Consensus         6 ~~C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            6 KECEK--DQFQC------RNERCIPSVWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             --CCT--TEEEC------TTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCC--CceEc------CCCCEeChhhccCCCCCCCCCccccCCC
Confidence            46877  89999      7899999999999999999999999985

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.23  E-value=5e-12  Score=74.52  Aligned_cols=33  Identities=42%  Similarity=0.896  Sum_probs=30.8

Q ss_pred             CCccCCCCCCCCC--CeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809         103 SPKMCDKGFCPPL--FKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus       103 ~~f~C~~~~~~~~--g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      .+|+|      .+  ++||+.+|+|||+.||.|||||.+|+
T Consensus         4 ~~f~C------~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            4 HEISC------GAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             TTCCC------SSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             Cceec------CCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            89999      54  89999999999999999999999996

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.23  E-value=7.5e-12  Score=76.03  Aligned_cols=38  Identities=34%  Similarity=0.839  Sum_probs=35.0

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|..  ++|+|      .+|+||++.|+|||+.||.|||||.+|.
T Consensus         4 ~~C~~--~~F~C------~~g~CI~~~~~CDG~~DC~DgSDE~~c~   41 (45)
T 1d2l_A            4 PQCQP--GEFAC------ANSRCIQERWKCDGDNDCLDNSDEAPAL   41 (45)
T ss_dssp             CBTTB--TCEEE------TTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred             CcCCC--CceEc------CCCCeEehhhccCCCCCCCCCCCCCCCc
Confidence            46877  89999      8899999999999999999999999874

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.22  E-value=3.5e-12  Score=78.07  Aligned_cols=43  Identities=35%  Similarity=0.744  Sum_probs=33.8

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|..  .+|+|.... ..+++||+..|+|||+.||.|||||.+|+
T Consensus         5 ~~C~~--~~F~C~~~~-~~~g~CIp~~~~CDG~~DC~DgSDE~~C~   47 (47)
T 1k7b_A            5 GSCPP--GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGCG   47 (47)
T ss_dssp             -CCST--TEECCSSCT-TSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCCC--CceEcCCCC-CCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence            45877  899991000 01789999999999999999999999884

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.20  E-value=2.8e-12  Score=86.94  Aligned_cols=57  Identities=40%  Similarity=0.839  Sum_probs=47.6

Q ss_pred             CceEEEEEec--------CCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCC--CCCC
Q psy5809          28 SDFCIIFLFL--------DPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE--VKCV   85 (160)
Q Consensus        28 ~g~~~~~~~~--------d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE--~~C~   85 (160)
                      .|.+|....+        |++||.+|.. .|.+.+|+|.++ +||+..|+|||+.||.|||||  .+|.
T Consensus        12 ~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B           12 DGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             TSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred             CCCEEeeecccCCcccCCCcccccccccccCCceeeECCCC-CEEecccccCCCcCCCCCCCcCcccCC
Confidence            3566665443        8999999864 488999999998 999999999999999999999  6664

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.19  E-value=3.4e-12  Score=79.82  Aligned_cols=40  Identities=43%  Similarity=1.027  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809          95 PVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL  142 (160)
Q Consensus        95 ~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~  142 (160)
                      +..|+.  ++|+|      .+|+||++.|+|||..||.|||||.+|..
T Consensus         4 p~~C~~--~~F~C------~nG~CIp~~~~CDG~~DC~DgSDE~~~~~   43 (52)
T 2m0p_A            4 PASCLD--TQYTC------DNHQCISKNWVCDTDNDCGDGSDEKNCNS   43 (52)
T ss_dssp             CCSSCS--SEEEC------TTCCEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred             CCCCCC--CceEC------CCCCEEecCccCCCCCCCCCCCccccchh
Confidence            466888  99999      88999999999999999999999998854

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.19  E-value=1.2e-11  Score=76.72  Aligned_cols=37  Identities=43%  Similarity=1.014  Sum_probs=33.9

Q ss_pred             CCCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|.+.+|+|. ++ +||+..|+|||+.||.|||||.+|.
T Consensus         6 ~C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~   43 (50)
T 2knx_A            6 TCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAA   43 (50)
T ss_dssp             TTCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred             CCCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCcccccc
Confidence            4888999996 66 9999999999999999999999874

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.15  E-value=3e-11  Score=82.13  Aligned_cols=39  Identities=44%  Similarity=0.974  Sum_probs=35.4

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCC-CCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE-VNCVL  142 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE-~~C~~  142 (160)
                      ..|..  ++|+|      .+|+||++.|+|||+.||.||||| .+|..
T Consensus         3 ~~C~~--~~f~C------~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~   42 (82)
T 2fyj_A            3 RTCPP--NQFSC------ASGRCIPISWTCDLDDDCGDRSDESASCAY   42 (82)
T ss_dssp             SSSCT--TEEET------TSSCEEETTSSSSCSSSSCSTTTTTSSCCC
T ss_pred             CCCCC--CceEe------CCCCEEeccccCCCcccCCCcccccccccc
Confidence            45877  99999      789999999999999999999999 88864

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.15  E-value=1.1e-11  Score=74.82  Aligned_cols=36  Identities=42%  Similarity=0.976  Sum_probs=33.6

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      .|++.+|+|.++ +||+..|+|||+.||.|||||..|
T Consensus         4 ~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCCceEeCCC-CeEecCcccCCCCCCCCCCCCCCc
Confidence            488999999998 999999999999999999999864

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.14  E-value=4.7e-12  Score=77.47  Aligned_cols=44  Identities=34%  Similarity=0.722  Sum_probs=34.5

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL  142 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~  142 (160)
                      ..|..  .+|+|.... ..+++|||..|+|||+.||.|||||.+|..
T Consensus         3 ~~C~~--~~F~C~~~~-~~~~~CIp~~~~CDG~~DC~DgSDE~~C~~   46 (47)
T 1jrf_A            3 SRCPP--GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGCGT   46 (47)
T ss_dssp             CCCCC--CCSCSSSCS-CCCTTTSGGGGSSSSSCCSSSSCTTHHHHC
T ss_pred             CCCCC--CeeECCCCC-CCCCeEcCHhhcCCCCcCCCCCcccccCCC
Confidence            35777  899991000 016899999999999999999999998853

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.14  E-value=1.8e-11  Score=75.89  Aligned_cols=39  Identities=38%  Similarity=0.865  Sum_probs=34.4

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|..  .+|+|     ..+++||+..|+|||+.||.|||||.+|.
T Consensus         5 ~~C~~--~~F~C-----~~~g~CI~~~~~CDG~~DC~DgSDE~~C~   43 (50)
T 2knx_A            5 KTCGP--SSFSC-----PGTHVCVPERWLCDGDKDCADGADESIAA   43 (50)
T ss_dssp             CTTCT--TEEEE-----TTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred             CCCCC--CcEEc-----CCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence            56877  89999     33889999999999999999999999863

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.14  E-value=1.1e-11  Score=76.14  Aligned_cols=40  Identities=33%  Similarity=0.690  Sum_probs=35.5

Q ss_pred             CCCCCCCCCccCCCCCCCCCC-eEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLF-KCLKKSWLCDGEDDCGDFSDEVNCVLA  143 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g-~CI~~~~~CDG~~DC~DgsDE~~C~~~  143 (160)
                      ..|..  .+|+|      .++ +||+..|+|||+.||.|||||.+|...
T Consensus         5 ~~C~~--~~F~C------~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~~   45 (48)
T 2i1p_A            5 LNCTS--AQFKC------ADGSSCINSRYRCDGVYDCRDNSDEAGCPTR   45 (48)
T ss_dssp             CCCCS--SSEEC------SSSSCEECGGGSSSSSCCSSSSHHHHSSCSS
T ss_pred             CCCCC--CeeEC------CCCCEeCCHhhcCCCCCCCCCCcccccCCCC
Confidence            35777  89999      777 899999999999999999999999653

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.12  E-value=6.5e-12  Score=76.83  Aligned_cols=38  Identities=47%  Similarity=1.118  Sum_probs=34.0

Q ss_pred             CCCCCcEEeCC----CCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIG----SCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~----g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|.+.+|+|.+    .++|||..|+|||+.||.|||||.+|.
T Consensus         4 ~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence            48899999984    339999999999999999999999875

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.09  E-value=4e-12  Score=100.60  Aligned_cols=58  Identities=24%  Similarity=0.529  Sum_probs=49.7

Q ss_pred             ccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC-CCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809          68 KCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCP-PLFKCLKKSWLCDGEDDCGDFSDEVNCVLA  143 (160)
Q Consensus        68 ~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~-~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~  143 (160)
                      +.-...+|.+++||.+|.           .|+.  ++|+|     . .+|+|||+.|+|||..||.|||||.+|+..
T Consensus        36 ~~~~~~~c~d~sDE~~C~-----------~C~~--~~F~C-----~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~   94 (215)
T 2gtl_O           36 RIRKAGSLRHRVEELEDP-----------SCDE--HEHQC-----GGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP   94 (215)
T ss_dssp             HHHHHHHHHHHHHHHSCC-----------SSCT--TEEEC-----CSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCS
T ss_pred             hhcccccCCcchhhccCC-----------CCCC--cceee-----CCCCCcCccccccCCCCCcCCCcccccCCCCC
Confidence            344456899999999995           3888  99999     3 478999999999999999999999999654

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.08  E-value=2.9e-11  Score=72.99  Aligned_cols=37  Identities=38%  Similarity=1.025  Sum_probs=33.7

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      ..|+.  ++|+|      .+++||+..|+|||+.||.|||||.+|
T Consensus         3 ~~C~~--~~F~C------~~g~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            3 HSCSS--TQFKC------NSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSCT--TEEEC------TTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCC--CceEe------CCCCeEecCcccCCCCCCCCCCCCCCc
Confidence            45777  89999      789999999999999999999999875

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.99  E-value=2.8e-10  Score=77.08  Aligned_cols=49  Identities=33%  Similarity=0.732  Sum_probs=37.8

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCC---CCCCCcCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVN---CVLARKFNDTKL  151 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~---C~~~~~~~~~~~  151 (160)
                      ..|+.  ++|+|     .++++|||..|+|||+.||.|||||.+   |..........+
T Consensus         7 ~~C~~--~~f~C-----~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f   58 (80)
T 2kny_A            7 KTCGP--SSFSC-----PGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGS   58 (80)
T ss_dssp             CCCSS--SEEEC-----TTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSS
T ss_pred             CCCCC--Cceec-----CCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccc
Confidence            46888  89999     337899999999999999999999984   653333333333

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.78  E-value=3.6e-09  Score=83.75  Aligned_cols=39  Identities=38%  Similarity=0.704  Sum_probs=34.4

Q ss_pred             CCCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCC--CCCC
Q psy5809          48 KCPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEV--KCVP   86 (160)
Q Consensus        48 ~C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~--~C~~   86 (160)
                      .|++.+|+|.+ .+.||+..|+|||..||.|||||.  +|..
T Consensus        53 ~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~   94 (217)
T 2gtl_M           53 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL   94 (217)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred             CCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence            48899999975 349999999999999999999997  6753

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.77  E-value=9.7e-09  Score=91.18  Aligned_cols=85  Identities=29%  Similarity=0.630  Sum_probs=61.3

Q ss_pred             CcCCCCCCCCcEEeCCCCeEeeCccccCCcccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCeEEe
Q psy5809          43 SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAG-EDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPP-LFKCLK  120 (160)
Q Consensus        43 ~~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dg-sDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~-~g~CI~  120 (160)
                      ..|. +|...++|-    +.|....+..|.. |... .|+..|.+...|.  .+..|.   ++|+|      . +|+||+
T Consensus        18 s~C~-~C~~~~~R~----R~v~~p~q~gG~~-C~~~l~d~~~C~~~~~c~--~~~~c~---~~f~C------~~~g~Ci~   80 (554)
T 3ojy_A           18 TDCF-PCQDKKYRH----RSLLQPNKFGGTI-CSGDIWDQASCSSSTTCV--RQAQCG---QDFQC------KETGRCLK   80 (554)
T ss_dssp             CCCC-TTTCEEEEE----CCEEECBCSSCCC-CCSCSEEEEECCCCCCC----CCCCS---SSEEC------SSSCCEEC
T ss_pred             CCCC-CCCCccEee----EeeccccccCCCC-CCCccccccCCCCCCCCc--ccCCCC---CcCcc------CCCCEEcc
Confidence            4454 466555554    5566666666654 7764 6778897655552  234573   69999      7 899999


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCC
Q psy5809         121 KSWLCDGEDDCGDFSDEVNCVLAR  144 (160)
Q Consensus       121 ~~~~CDG~~DC~DgsDE~~C~~~~  144 (160)
                      +.|+|||..||.|+|||.+|....
T Consensus        81 ~~~~Cdg~~dC~d~sDE~~C~~~~  104 (554)
T 3ojy_A           81 RHLVCNGDQDCLDGSDEDDCEDVR  104 (554)
T ss_dssp             GGGTTSSSCCSSSCTTSSSCCSCC
T ss_pred             cccccCCcccCCCccccccCCCCC
Confidence            999999999999999999997543

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.76  E-value=4.1e-09  Score=83.24  Aligned_cols=39  Identities=33%  Similarity=0.660  Sum_probs=34.0

Q ss_pred             CCCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCC--CCCC
Q psy5809          48 KCPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEV--KCVP   86 (160)
Q Consensus        48 ~C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~--~C~~   86 (160)
                      .|++.+|+|. +.+.||+..|+|||..||.|||||.  +|..
T Consensus        52 ~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~   93 (220)
T 2gtl_N           52 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT   93 (220)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCG
T ss_pred             CCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCC
Confidence            4888999995 2349999999999999999999996  8875

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.73  E-value=1.4e-08  Score=89.81  Aligned_cols=83  Identities=29%  Similarity=0.717  Sum_probs=58.5

Q ss_pred             CcCCCCCCCCcEEeCCCCeEeeCccccCCcccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCeEEe
Q psy5809          43 SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCY-AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPP-LFKCLK  120 (160)
Q Consensus        43 ~~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~-dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~-~g~CI~  120 (160)
                      ..|. +|...++|-    +.|....+..|. .|+ ...|+..|.+...|.  .+..|    .+|+|      . +|+||+
T Consensus        20 s~C~-~C~~~~~R~----R~v~~p~q~gG~-~C~~~l~d~~~C~~~~~C~--~~~~c----~~f~C------~~~g~Ci~   81 (537)
T 3ojy_B           20 TTCD-PCQKKRYRY----AYLLQPSQFHGE-PCNFSDKEVEDCVTNRPCR--SQVRC----EGFVC------AQTGRCVN   81 (537)
T ss_dssp             CCCB-TTTTEEEEE----CCEEECEETTCC-CCCSCSEEEEECCCCCCCC--CCSCC----SSEEC------TTTCCEEC
T ss_pred             CCCC-CCCCceEee----eeeccccccCCC-cCccchhhhccCCCccccc--cCCCC----CccCc------CCCCcEee
Confidence            3454 365555543    455555555544 455 457888887654552  23446    48999      7 899999


Q ss_pred             CccccCCCCCCCCCCCCCCCCCC
Q psy5809         121 KSWLCDGEDDCGDFSDEVNCVLA  143 (160)
Q Consensus       121 ~~~~CDG~~DC~DgsDE~~C~~~  143 (160)
                      ..|+|||..||.|+|||.+|...
T Consensus        82 ~~~~Cdg~~dC~d~sdE~~c~~~  104 (537)
T 3ojy_B           82 RRLLCNGDNDCGDQSDEANCRRI  104 (537)
T ss_dssp             GGGTTSSSCCSSSSCTTSSCSSC
T ss_pred             ccccCCCCCCCCCccccccCCCC
Confidence            99999999999999999999754

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.65  E-value=6.8e-09  Score=91.97  Aligned_cols=66  Identities=26%  Similarity=0.367  Sum_probs=48.5

Q ss_pred             cEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCC
Q psy5809          53 EFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCG  132 (160)
Q Consensus        53 ~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~  132 (160)
                      -+.|..+ .++...+.||+..+|.+.+++  |             |..  .+|+|      .++.||+..++|||+.||.
T Consensus       175 l~~C~~~-~~~~~~h~~DagV~C~~~~~~--c-------------~~~--~~~~C------~~~~ci~~~~~Cdg~~dC~  230 (565)
T 2xrc_A          175 LAECTFT-KRRTMGYQDFADVVCYTQKAD--S-------------PMD--DFFQC------VNGKYISQMKACDGINDCG  230 (565)
T ss_dssp             GGGSEEE-CCCCCSSCCCCEEEBCCC--------------------------CBC------TTSCBCCTTSTTSSSCCSS
T ss_pred             hhhcccC-cccccccccCCceeccccccC--C-------------CCc--CeeEC------CCCCccCHHHcCCCcccCC
Confidence            3456555 567777889999999876543  2             222  67999      8899999999999999999


Q ss_pred             CCCCCCCCCC
Q psy5809         133 DFSDEVNCVL  142 (160)
Q Consensus       133 DgsDE~~C~~  142 (160)
                      |+|||.+|..
T Consensus       231 d~sDE~~C~~  240 (565)
T 2xrc_A          231 DQSDELCCKA  240 (565)
T ss_dssp             SSSSSSSBSS
T ss_pred             CCcccccccc
Confidence            9999999853

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.60  E-value=1.6e-08  Score=80.05  Aligned_cols=41  Identities=37%  Similarity=0.763  Sum_probs=35.3

Q ss_pred             CCCCCCCCCccCCCCCCCC-CCeEEeCccccCCCCCCCCCCCCC--CCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPP-LFKCLKKSWLCDGEDDCGDFSDEV--NCVLA  143 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~-~g~CI~~~~~CDG~~DC~DgsDE~--~C~~~  143 (160)
                      ..|+.  .+|+|     .+ +|.||+..|+|||..||.|||||.  +|...
T Consensus        52 ~~C~~--~~F~C-----~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~   95 (217)
T 2gtl_M           52 HHCDE--HESEC-----RGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLN   95 (217)
T ss_dssp             CCCCT--TEEEC-----SSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCG
T ss_pred             CCCCC--Cceec-----CCCCCcEechhhccCCCCCCCCCCccccCcCCCC
Confidence            45887  89999     32 589999999999999999999998  78654

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.57  E-value=2.8e-08  Score=78.52  Aligned_cols=41  Identities=27%  Similarity=0.617  Sum_probs=35.1

Q ss_pred             CCCCCCCCCccCCCCCCC-CCCeEEeCccccCCCCCCCCCCCCC--CCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCP-PLFKCLKKSWLCDGEDDCGDFSDEV--NCVLA  143 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~-~~g~CI~~~~~CDG~~DC~DgsDE~--~C~~~  143 (160)
                      ..|..  .+|+|     . .+|.||+..|+|||..||.|||||.  +|...
T Consensus        51 ~~C~~--~eFqC-----~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~   94 (220)
T 2gtl_N           51 THCEK--RTFQC-----GGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTS   94 (220)
T ss_dssp             CSSCT--TEEEC-----CSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGG
T ss_pred             CCCCC--CccCc-----CCCCCcEeCcceecCCCCCCCCCCccCcccCCCC
Confidence            45777  89999     2 2589999999999999999999997  88655

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=83.71  Aligned_cols=34  Identities=32%  Similarity=0.773  Sum_probs=32.3

Q ss_pred             CcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          52 GEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        52 ~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      .+|+|. +| +||+..|+|||..||.|+|||.+|..
T Consensus        69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~c~~  103 (537)
T 3ojy_B           69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEANCRR  103 (537)
T ss_dssp             SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSSCSS
T ss_pred             CccCcCCCC-cEeeccccCCCCCCCCCccccccCCC
Confidence            799999 77 99999999999999999999999975

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.28  E-value=4.4e-07  Score=80.55  Aligned_cols=36  Identities=36%  Similarity=0.905  Sum_probs=33.4

Q ss_pred             CCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        49 C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      |+ .+|+|. +| +||+..|+|||..||.|+|||.+|..
T Consensus        66 c~-~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~  102 (554)
T 3ojy_A           66 CG-QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCED  102 (554)
T ss_dssp             CS-SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCS
T ss_pred             CC-CcCccCCCC-EEcccccccCCcccCCCccccccCCC
Confidence            63 799999 77 99999999999999999999999975

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.85  E-value=2.1e-05  Score=73.31  Aligned_cols=61  Identities=31%  Similarity=0.649  Sum_probs=42.9

Q ss_pred             ccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809          73 LDCY-AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA  143 (160)
Q Consensus        73 ~DC~-dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~  143 (160)
                      ..|. ...++..|.....|+.. ...|.   +.|+|      .+|+||++.|+|||..||.|+|||.+|...
T Consensus        94 ~~C~g~~~e~~~C~~~~~Cp~~-~~~C~---~~F~C------~~g~ci~~~~~c~g~~dC~d~sde~~C~~~  155 (913)
T 3t5o_A           94 QPCTAPLVAFQPCIPSKLCKIE-EADCK---NKFRC------DSGRCIARKLECNGENDCGDNSDERDCGRT  155 (913)
T ss_dssp             CCCCSCSBCCEECCCSSSSCCC-CCCCS---SEEEC------TTSCEEEGGGSSSSSCCSSSSGGGTTCSSC
T ss_pred             CCCCCCcccccccCCccCCCcc-ccCcc---ccccc------CCCceEccceecCCcccCCCccccccCCCC
Confidence            3455 33444557643233221 12453   57999      789999999999999999999999999853

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.50  E-value=4e-05  Score=71.41  Aligned_cols=34  Identities=32%  Similarity=0.770  Sum_probs=32.1

Q ss_pred             CcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          52 GEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        52 ~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      .+|+|.+| +||+..|+|||..||.|+|||.+|..
T Consensus       121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C~~  154 (913)
T 3t5o_A          121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDCGR  154 (913)
T ss_dssp             SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred             cccccCCC-ceEccceecCCcccCCCccccccCCC
Confidence            57999998 99999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	6e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	3e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	8e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-05
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-05
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	3e-05
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-05
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	3e-05
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	3e-05
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-05
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	5e-05
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-05
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-05
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	8e-05
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-04
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-04
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	0.002
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-04
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	4e-04
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	2e-04
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.002
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-04
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.003

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 4e-07
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          G C   EF C    +CIP  W+CDGD DC    DE  C
Sbjct: 2  GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 104 PKMCDKGF--CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
           P  C      C     C+   W CDG+ DC D SDE +C
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 6e-06
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C  G+F C      CIPQ W+CDG +DC  G DE  C
Sbjct: 5  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 3e-05
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+ + W CDG+ DC + SDE  C
Sbjct: 18  RCIPQFWRCDGQVDCDNGSDEQGC 41

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 8e-06
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C + E  C   S  CIP  W+CDG+ DC +GEDE  C
Sbjct: 1  CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 7e-05
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW CDGE+DC    DE NC
Sbjct: 14  QCIPVSWRCDGENDCDSGEDEENC 37

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVL 142
           +C+ K ++CDG +DC +  DE +C L
Sbjct: 16  QCISKLFVCDGHNDCRNGEDEKDCTL 41

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.1 bits (86), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          C   E  C      CI + + CDG  DC  GEDE  C 
Sbjct: 3  CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 40

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
            C+  S  CD E DC D SDEV CV
Sbjct: 14  NCIHGSRQCDREYDCKDMSDEVGCV 38

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          C   EF C     CI    +CD + DC    DEV CV
Sbjct: 3  CRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCV 38

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   EF C     CI +++ CD D DC  G DE  C
Sbjct: 3  CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           KC+ + ++CD + DC D SDE +C
Sbjct: 14  KCISRQFVCDSDRDCLDGSDEASC 37

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVLARK 145
           +C+ + W CDG++DCGD+SDE +     +
Sbjct: 16  RCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 4e-05
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   +F C  S  CIP+ W CDGD DC    DE   
Sbjct: 5  CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHA 39

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 37.2 bits (86), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 49 CPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          CP G+F C         C PQ+W CDG  DC  G DE  C
Sbjct: 2  CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 36.8 bits (85), Expect = 5e-05
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C  + WLCDG  DC D  DE  C
Sbjct: 18  ECYPQDWLCDGHPDCDDGRDEWGC 41

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 5e-05
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
          C   EF C  S  CI   W+CDG  DC    DE  C
Sbjct: 2  CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 8e-05
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+  SW CDG  DC D SDE NC
Sbjct: 13  ECIHSSWRCDGGPDCKDKSDEENC 36

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 8e-05
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 42 ASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
           S    +C   EF C     CI  +W CDG  +C  G DE +  
Sbjct: 1  GSAVGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQET 43

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
           KC+   W+CDG  +C D SDE    
Sbjct: 19  KCISYKWVCDGSAECQDGSDESQET 43

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          +C  GEF C  +  CI + WKCDGD DC    DE   +
Sbjct: 5  QCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
           +C+++ W CDG++DC D SDE   +
Sbjct: 17  RCIQERWKCDGDNDCLDNSDEAPAL 41

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          C    F C      CI     CDG  DC+   DE   V
Sbjct: 2  CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 32.5 bits (74), Expect = 0.002
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
           +C+    +CDG  DC +  DE   V
Sbjct: 15  ECISDLLVCDGHKDCHNAHDEDPDV 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          C    F C  S  CIPQ W CD D DC  G DE    
Sbjct: 3  CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQR 38

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 4e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
            C+ + W CD + DC D SDE    
Sbjct: 14  TCIPQLWACDNDPDCEDGSDEWPQR 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
          C   E  C      CI     CDG+ DC  G DE    
Sbjct: 3  CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 32.5 bits (74), Expect = 0.002
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
           +C+     CDGE DC D SDE    
Sbjct: 16  ECIHDLLFCDGEKDCRDGSDEDPET 40

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 6e-04
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
           +C+    +C+   DC D+SDE   
Sbjct: 18  ECITLDKVCNMARDCRDWSDEPIK 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.003
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
              +F C  S  CI  +  C+   DC    DE   
Sbjct: 7  EGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIK 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.41
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.38
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.37
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.35
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.35
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.34
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.33
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.31
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.3
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.29
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.29
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.28
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.25
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.24
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.24
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.23
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.22
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.22
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.21
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.21
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.2
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.2
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.15
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.11
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.1
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.1
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.06
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.01
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.0
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.0

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.7e-14  Score=80.66  Aligned_cols=37  Identities=41%  Similarity=1.009  Sum_probs=34.7

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      +|++.+|+|.++ +||+..|+|||+.||.|||||.+|.
T Consensus         1 PC~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           1 PCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCCceEcCCC-CEECchhcCCCCCcCCCCchhhccC
Confidence            488999999998 9999999999999999999999884

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-13  Score=79.62  Aligned_cols=37  Identities=41%  Similarity=0.841  Sum_probs=35.0

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|++.+|+|.++ +||+..|+|||+.||.|||||.+|.
T Consensus         2 sC~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCTTEEECSSS-CEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCCCceEeCCC-CeEChhhcCCCCCcCCCCchhccCc
Confidence            488999999998 9999999999999999999999985

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.4e-13  Score=80.07  Aligned_cols=40  Identities=45%  Similarity=1.049  Sum_probs=36.0

Q ss_pred             CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP   86 (160)
Q Consensus        47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~   86 (160)
                      ..|++.+|+|.++++||+..|+|||+.||.|||||.+|..
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~~   41 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCCC
Confidence            3588999999765699999999999999999999999963

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-13  Score=79.39  Aligned_cols=40  Identities=35%  Similarity=0.656  Sum_probs=35.9

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL  142 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~  142 (160)
                      ..|..  ++|+|     ..+++||+++|+|||+.||.|+|||.+|..
T Consensus         2 ~~C~~--~~f~C-----~~~~~CI~~~~~CDg~~DC~DgsDE~~C~~   41 (42)
T d1cr8a_           2 GGCHT--DEFQC-----RLDGLCIPLRWRCDGDTDCMDSSDEKSCEG   41 (42)
T ss_dssp             CCSST--TCEEC-----TTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred             CCCCC--CceEc-----CCCCEEccchhcCCCcCcCCCcchhccCCC
Confidence            46888  99999     457899999999999999999999999974

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-13  Score=79.15  Aligned_cols=37  Identities=41%  Similarity=0.977  Sum_probs=34.4

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|++.+|+|.+| +||+..|+|||+.||.|||||.+|+
T Consensus         2 tC~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred             cCCCCCEEcCCC-CEEcchhcCcCcCcCcCCchhcCCC
Confidence            388899999988 9999999999999999999999873

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.3e-13  Score=78.60  Aligned_cols=38  Identities=50%  Similarity=1.156  Sum_probs=33.8

Q ss_pred             CCCCCCcEEeCCC-CeEeeCccccCCcccCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGS-CVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        47 ~~C~~~~f~C~~g-~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      .+|++.+|+|..+ ++|||..|+|||+.||.|||||.+|
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            3588999999643 4899999999999999999999987

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-13  Score=79.12  Aligned_cols=37  Identities=38%  Similarity=0.805  Sum_probs=34.4

Q ss_pred             CCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        97 ~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      .|+.  ++|+|      .+|.||+..|+|||+.||.|||||.+|+
T Consensus         2 tC~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           2 TCSQ--AEFRC------HDGKCISRQFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCT--TEEEC------TTSCEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred             cCCC--CCEEc------CCCCEEcchhcCcCcCcCcCCchhcCCC
Confidence            4777  89999      8899999999999999999999999985

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.7e-13  Score=78.67  Aligned_cols=37  Identities=46%  Similarity=1.093  Sum_probs=33.8

Q ss_pred             CCCCcEEeCCC-CeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          49 CPVGEFLCIGS-CVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        49 C~~~~f~C~~g-~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      |++.+|+|.++ .+||+..|+|||+.||.|||||.+|.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            67899999875 47999999999999999999999986

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.8e-13  Score=78.86  Aligned_cols=38  Identities=37%  Similarity=0.915  Sum_probs=35.1

Q ss_pred             CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      ..|++.+|+|.++ +|||..|+|||+.||.|||||.+|.
T Consensus         6 ~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c~   43 (44)
T d1f5ya1           6 DRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQET   43 (44)
T ss_dssp             CCCCSSSEECSSS-CEECTTTTTSSSCSSSSSGGGTTSS
T ss_pred             CccCCCCeEcCCC-CeEChhHcCCCcCcCCCCCcCCCCc
Confidence            4588999999998 9999999999999999999998873

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.3e-13  Score=77.03  Aligned_cols=37  Identities=43%  Similarity=0.807  Sum_probs=34.4

Q ss_pred             CCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        97 ~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      .|.+  ++|+|      .+++||+..|+|||+.||.|+|||.+|.
T Consensus         2 sC~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRP--DEFQC------SDGNCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCT--TEEEC------SSSCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCC--CceEe------CCCCeEChhhcCCCCCcCCCCchhccCc
Confidence            3777  99999      8899999999999999999999999995

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-13  Score=76.07  Aligned_cols=36  Identities=44%  Similarity=0.906  Sum_probs=33.5

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      |+.  ++|+|      .+|+||+..|+|||+.||.|||||.+|.
T Consensus         2 C~~--~~f~C------~~g~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           2 CSA--FEFHC------LSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCT--TCEEC------TTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCC--CceEc------CCCCEECchhcCCCCCcCCCCchhhccC
Confidence            666  89999      8899999999999999999999999983

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.28  E-value=4.2e-13  Score=78.66  Aligned_cols=38  Identities=42%  Similarity=0.864  Sum_probs=33.9

Q ss_pred             CCCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        48 ~C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      .|.+++|+|.+ .++||+..|+|||+.||.|||||.+|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            48899999963 249999999999999999999999985

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.3e-12  Score=75.42  Aligned_cols=39  Identities=36%  Similarity=0.865  Sum_probs=33.4

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      ..|++  ++|+|..    .+++|||..|+|||+.||.|||||.+|
T Consensus         3 ~~C~~--~~f~C~~----~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           3 VTCKS--GDFSCGG----RVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTCCS--SCEECCS----SCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             cccCC--CceECCC----CCCCCccchhcCCCcCcCcCcccccCC
Confidence            45877  9999921    246899999999999999999999987

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-12  Score=75.47  Aligned_cols=34  Identities=50%  Similarity=1.042  Sum_probs=32.3

Q ss_pred             CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCC
Q psy5809          49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK   83 (160)
Q Consensus        49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~   83 (160)
                      |++++|+|.+| .||+..|+|||+.||.|||||..
T Consensus         3 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           3 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             CCTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             cCCCceEcCCC-CeEChhhcCCCCCCCCCCCcCCC
Confidence            78899999998 99999999999999999999975

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.4e-12  Score=76.47  Aligned_cols=38  Identities=34%  Similarity=0.714  Sum_probs=35.1

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|..  ++|+|      .+++||+++|+|||+.||.|||||.+|.
T Consensus         6 ~~C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~c~   43 (44)
T d1f5ya1           6 DRCER--NEFQC------QDGKCISYKWVCDGSAECQDGSDESQET   43 (44)
T ss_dssp             CCCCS--SSEEC------SSSCEECTTTTTSSSCSSSSSGGGTTSS
T ss_pred             CccCC--CCeEc------CCCCeEChhHcCCCcCcCCCCCcCCCCc
Confidence            56888  99999      8899999999999999999999999884

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.23  E-value=1.9e-12  Score=76.12  Aligned_cols=41  Identities=37%  Similarity=0.798  Sum_probs=33.1

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      |++  ++|+|.... ..+++|||++|+|||+.||.|||||.+|.
T Consensus         2 C~~--~~f~C~~~~-~~~~~CIp~~~~CDg~~DC~DgsDE~~CG   42 (42)
T d1k7ba_           2 CPP--GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGCG   42 (42)
T ss_dssp             CST--TEECCSSCT-TSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCc--CcEEcCCCC-CCCCcEechhhcCCCcCcCcCChhhhccC
Confidence            666  899994321 13468999999999999999999999984

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-12  Score=75.79  Aligned_cols=37  Identities=49%  Similarity=1.087  Sum_probs=34.2

Q ss_pred             CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809          47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      ..|++.+|+|.++ +||+..|+|||+.||.|||||..+
T Consensus         4 ~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           4 PQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CBTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CcCCCCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCcC
Confidence            3488999999998 999999999999999999999875

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.22  E-value=2e-12  Score=76.09  Aligned_cols=37  Identities=49%  Similarity=1.129  Sum_probs=33.0

Q ss_pred             CCCCcEEeCCC----CeEeeCccccCCcccCCCCCCCCCCC
Q psy5809          49 CPVGEFLCIGS----CVCIPQEWKCDGDLDCYAGEDEVKCV   85 (160)
Q Consensus        49 C~~~~f~C~~g----~~CI~~~~~CDg~~DC~dgsDE~~C~   85 (160)
                      |++.+|+|.+.    ++|||..|+|||+.||.|||||.+|.
T Consensus         2 C~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~CG   42 (42)
T d1k7ba_           2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   42 (42)
T ss_dssp             CSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhccC
Confidence            78899999753    37999999999999999999999884

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-12  Score=74.85  Aligned_cols=36  Identities=42%  Similarity=0.902  Sum_probs=31.6

Q ss_pred             CCCCCCCccCCCCCCCCC--CeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPL--FKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~--g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      |++  ++|+|      .+  .+||+..|+|||+.||.|||||.+|.
T Consensus         1 C~~--~~f~C------~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRI--HEISC------GAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCT--TSCCC------SSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CCC--CceEC------CCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            445  89999      44  46999999999999999999999996

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.21  E-value=1.2e-12  Score=76.65  Aligned_cols=39  Identities=31%  Similarity=0.812  Sum_probs=33.6

Q ss_pred             CCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        97 ~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      .|..  ++|+|..    .+++||+..|+|||+.||.|+|||.+|.
T Consensus         2 ~C~~--~~f~C~~----~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDE--HEHQCGG----DDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCT--TEEECCS----SSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCc--CeeECCC----CCCcEeechhccCCCCcCCCCchhccCc
Confidence            4777  9999921    3578999999999999999999999995

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-12  Score=77.00  Aligned_cols=36  Identities=42%  Similarity=0.976  Sum_probs=34.0

Q ss_pred             CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809          48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC   84 (160)
Q Consensus        48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C   84 (160)
                      .|++++|+|.++ +||+..|+|||+.||.|||||.+|
T Consensus         4 ~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             cCCCCcEEcCCC-CEEChhhcCcCcccCCCCCcCCCC
Confidence            488999999998 999999999999999999999876

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.9e-12  Score=75.05  Aligned_cols=39  Identities=36%  Similarity=0.882  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          95 PVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        95 ~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      +..|+.  ++|+|      .+++||+.+++|||+.||.|||||..+.
T Consensus         3 p~~C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~~~   41 (45)
T d1d2la_           3 PPQCQP--GEFAC------ANSRCIQERWKCDGDNDCLDNSDEAPAL   41 (45)
T ss_dssp             CCBTTB--TCEEE------TTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred             CCcCCC--CCeEc------CCCCeEChhhhCcCcCcCCCCCCCCcCc
Confidence            356888  99999      8899999999999999999999998764

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.3e-12  Score=75.85  Aligned_cols=38  Identities=37%  Similarity=0.979  Sum_probs=34.9

Q ss_pred             CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809          96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV  141 (160)
Q Consensus        96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~  141 (160)
                      ..|++  ++|+|      .+++||+..++|||+.||.|||||.+|.
T Consensus         3 ~~C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~c~   40 (44)
T d1j8ea_           3 HSCSS--TQFKC------NSGRCIPEHWTCDGDNDCGDYSDETHAN   40 (44)
T ss_dssp             SSSCT--TEEEC------TTSCEEEGGGTTSSSCCSSSSGGGSHHH
T ss_pred             ccCCC--CcEEc------CCCCEEChhhcCcCcccCCCCCcCCCCC
Confidence            45887  99999      8899999999999999999999999874

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-11  Score=71.82  Aligned_cols=35  Identities=34%  Similarity=0.732  Sum_probs=32.2

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      |+.  ++|+|      .+|.||+..|+|||+.||.|||||..+
T Consensus         3 C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~~   37 (39)
T d2fcwb2           3 CGP--ASFQC------NSSTCIPQLWACDNDPDCEDGSDEWPQ   37 (39)
T ss_dssp             CCT--TEEEC------TTSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred             cCC--CceEc------CCCCeEChhhcCCCCCCCCCCCcCCCC
Confidence            666  89999      889999999999999999999999754

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.10  E-value=2.2e-11  Score=71.46  Aligned_cols=34  Identities=41%  Similarity=0.734  Sum_probs=30.9

Q ss_pred             CCCCcEEeCCC-CeEeeCccccCCcccCCCCCCCC
Q psy5809          49 CPVGEFLCIGS-CVCIPQEWKCDGDLDCYAGEDEV   82 (160)
Q Consensus        49 C~~~~f~C~~g-~~CI~~~~~CDg~~DC~dgsDE~   82 (160)
                      |++++|+|.++ ++||+..|+|||+.||.|||||.
T Consensus         3 C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            78999999753 48999999999999999999995

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.10  E-value=2.4e-11  Score=70.96  Aligned_cols=35  Identities=37%  Similarity=0.716  Sum_probs=31.4

Q ss_pred             CCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCCC
Q psy5809          49 CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVK   83 (160)
Q Consensus        49 C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~~   83 (160)
                      |++++|+|.+ .++||+..|+|||+.||.|||||..
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            7889999974 2499999999999999999999965

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.1e-11  Score=70.18  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=31.2

Q ss_pred             CC-CCcEEeCCCCeEeeCccccCCcccCCCCCCCCC
Q psy5809          49 CP-VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK   83 (160)
Q Consensus        49 C~-~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~   83 (160)
                      |. +.+|+|.+| +||+..|+|||+.||.|||||..
T Consensus         6 C~~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           6 CEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             CCSTTEEECTTS-CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             CCCCCeEECCCC-CeEchhhcCCCCCCCCCCCccCc
Confidence            53 699999999 99999999999999999999963

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.01  E-value=8.1e-11  Score=68.63  Aligned_cols=37  Identities=27%  Similarity=0.603  Sum_probs=31.2

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC  140 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C  140 (160)
                      |++  ++|+|.+    .+++||+.+|+|||+.||.|||||..+
T Consensus         2 C~~--~~f~C~~----~~g~Ci~~~~~CDg~~DC~DgsDE~~~   38 (41)
T d2gtln2           2 CEK--RTFQCGG----NEQECISDLLVCDGHKDCHNAHDEDPD   38 (41)
T ss_dssp             SCT--TEEECCS----SSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred             CCC--CeeECCC----cCCCeechHHcCCCCccCCCCCccccc
Confidence            666  8999921    257899999999999999999999754

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.00  E-value=7.9e-11  Score=69.02  Aligned_cols=35  Identities=37%  Similarity=0.784  Sum_probs=29.9

Q ss_pred             CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCC
Q psy5809          98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEV  138 (160)
Q Consensus        98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~  138 (160)
                      |+.  ++|+|.+    .+++||+..|+|||+.||.|||||.
T Consensus         3 C~~--~~f~C~~----~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           3 CDE--HESECRG----DVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCT--TEEECSS----SSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCC--CeeECCC----CCCCEechhhcCCCCccCCCCCcCC
Confidence            666  9999921    2478999999999999999999995

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=68.51  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCC
Q psy5809         103 SPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVN  139 (160)
Q Consensus       103 ~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~  139 (160)
                      ++|+|      .+|+||+..|+|||+.||.|+|||..
T Consensus        10 ~~f~C------~~g~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2          10 NKFKC------HSGECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             TEEEC------TTSCEEESTTTTCSSCCCSSCSSSCT
T ss_pred             CeEEC------CCCCeEchhhcCCCCCCCCCCCccCc
Confidence            79999      88999999999999999999999963