Psyllid ID: psy5810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MPFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWFSKVSCENLLVL
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEccccccccEEEEEccccccccccccccccEEEEEEEEcccEEEEEEEcccccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHEEEcccccEEEEEEEcccccccccccccccccHHHHHEEEcEEEEEEEccccccccccccccccccHHHHHHcccccEEEEEEEcccccccEHHHHHccccHHHHHHcccccEEEEEEEcccHHHHHHHccHHHHHHHHHccccccEEEEEEcHHHHHHccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mpfcsqvenivhtyhpdvFFIVYSdtnhtqrcltsipfcstVENFVQTYHHVFFIVHsdtnhtqrcltsmpfcsqVENFVQTYHPDVFFIVYSdtnhtqrcltpmpfcsqVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSvglvyktdELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWFSkvscenllvl
Flexible Loop (DISEMBL)
MPFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLwdskyigekAVILVankadlerrrqvthsdgkklayawGVKFVETSVGLVYKTDELLVGIarqaglnkkrnKLLAKKQKKMASYINNikqfkwfskvsCENLLVL
Low Complexity Region (SEG)
MPFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGlnkkrnkllakkqkkMASYINNIKQFKWFSKVSCENLLVL
Disordered region (IsUnstruct)
***CSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWFSKVSCENLL**
Disordered Region (DISOPRED)
****SQVENIVHTYHPDVFFIVYSDTNH********************YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA*************************************CENLLVL
Disordered Region (DISEMBL)
MPFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR********KKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWFSKVSCENLLVL
Disordered Region (DISPRO)
*PFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL*****KKMASYINNIKQFKWFSKVSCE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFCSQVENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWFSKVSCENLLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q8IYK8	340	GTP-binding protein REM 2	yes	N/A	0.516	0.379	0.346	3e-12
P55041	295	GTP-binding protein GEM O	yes	N/A	0.5	0.423	0.341	4e-12
P55040	296	GTP-binding protein GEM O	no	N/A	0.5	0.422	0.341	4e-12
Q5R541	296	GTP-binding protein GEM O	yes	N/A	0.5	0.422	0.341	5e-12
Q8VEL9	341	GTP-binding protein REM 2	no	N/A	0.516	0.378	0.339	1e-11
Q9WTY2	341	GTP-binding protein REM 2	no	N/A	0.516	0.378	0.339	1e-11
O88667	308	GTP-binding protein RAD O	no	N/A	0.52	0.422	0.315	3e-11
P55042	308	GTP-binding protein RAD O	no	N/A	0.52	0.422	0.321	3e-11
O35929	297	GTP-binding protein REM 1	no	N/A	0.512	0.430	0.312	7e-11
Q5R988	183	Ras-related protein Rap-2	no	N/A	0.344	0.469	0.383	4e-10

>sp|Q8IYK8|REM2_HUMAN GTP-binding protein REM 2 OS=Homo sapiens GN=REM2 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 24/153 (15%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 189 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 248

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN---------------------KLL 219
                K +ETS  L + T EL  G  RQ  L + RN                     + L
Sbjct: 249 GTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRESL 308

Query: 220 AKKQKKMASYI--NNIKQFKWFSKVSCENLLVL 250
            KK K+  + +   N K FK  S+ SC +L VL
Sbjct: 309 TKKAKRFLANLVPRNAKFFKQRSR-SCHDLSVL 340

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.
Homo sapiens (taxid: 9606)

>sp|P55041|GEM_MOUSE GTP-binding protein GEM OS=Mus musculus GN=Gem PE=1 SV=2

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  A
Sbjct: 150 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 209

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGL---NKKRNKLLAKKQKKMASYINNIKQFK 237
             +  KF+ETS  + +   EL  GI RQ  L   +K++N+     QK+  S     ++F 
Sbjct: 210 VVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRRESIPRKARRF- 268

Query: 238 WFSKVSCEN 246
           W   V+  N
Sbjct: 269 WGKIVAKNN 277

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|P55040|GEM_HUMAN GTP-binding protein GEM OS=Homo sapiens GN=GEM PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  A
Sbjct: 151 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 210

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGL---NKKRNKLLAKKQKKMASYINNIKQFK 237
             +  KF+ETS  + +   EL  GI RQ  L   +K++N+     QK+  S     ++F 
Sbjct: 211 VVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRF- 269

Query: 238 WFSKVSCEN 246
           W   V+  N
Sbjct: 270 WGKIVAKNN 278

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R541|GEM_PONAB GTP-binding protein GEM OS=Pongo abelii GN=GEM PE=2 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  A
Sbjct: 151 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRTCA 210

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGL---NKKRNKLLAKKQKKMASYINNIKQFK 237
             +  KF+ETS  + +   EL  GI RQ  L   +K++N+     QK+  S     ++F 
Sbjct: 211 VVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRF- 269

Query: 238 WFSKVSCEN 246
           W   V+  N
Sbjct: 270 WGKIVAKNN 278

Could be a regulatory protein, possibly participating in receptor-mediated signal transduction at the plasma membrane. Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity.

Pongo abelii (taxid: 9601)

>sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus GN=Rem2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 73/153 (47%), Gaps = 24/153 (15%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R+ F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 190 DAFLIVFSVTDRRGFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 249

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN---------------------KLL 219
                K +ETS  L + T EL  G  RQ  L + R                      + L
Sbjct: 250 GTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESL 309

Query: 220 AKKQKKMASYI--NNIKQFKWFSKVSCENLLVL 250
            KK K+  + +   N K FK  S+ SC +L VL
Sbjct: 310 TKKAKRFLANLVPRNAKFFKQRSR-SCHDLSVL 341

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.

Mus musculus (taxid: 10090)

>sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicus GN=Rem2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 190 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 249

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN---------------------KLL 219
                K +ETS  L + T EL  G  RQ  L + R                      + L
Sbjct: 250 GTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESL 309

Query: 220 AKKQKKMASYI--NNIKQFKWFSKVSCENLLVL 250
            KK K+  + +   N K FK  S+ SC +L VL
Sbjct: 310 TKKAKRFLANLVPRNAKFFKQRSR-SCHDLSVL 341

Binds GTP saturably and exhibits a low intrinsic rate of GTP hydrolysis.

Rattus norvegicus (taxid: 10116)

>sp|O88667|RAD_MOUSE GTP-binding protein RAD OS=Mus musculus GN=Rrad PE=1 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYS+ ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 163 DAYVIVYSITDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 222

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNK-------------KRNKLLAKKQKKMA 227
             +  KF+ETS  L +    L  G+ RQ  L +             +R + L KK K+  
Sbjct: 223 VVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEDNARRQAGTRRRESLGKKAKRFL 282

Query: 228 SYI--NNIKQFKWFSKV-SCENLLVL 250
             I   N ++  + +K  SC +L VL
Sbjct: 283 GRIVARNSRKMAFRAKSKSCHDLSVL 308

May play an important role in cardiac antiarrhythmia via the strong suppression of voltage-gated L-type Ca(2+) currents. Regulates voltage-dependent L-type calcium channel subunit alpha-1C trafficking to the cell membrane. Inhibits cardiac hypertrophy through the calmodulin-dependent kinase II (CaMKII) pathway. Inhibits phosphorylation and activation of CAMK2D.

Mus musculus (taxid: 10090)

>sp|P55042|RAD_HUMAN GTP-binding protein RAD OS=Homo sapiens GN=RRAD PE=1 SV=2

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYSV ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 163 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 222

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNK-------------KRNKLLAKKQKKMA 227
             +  KF+ETS  L +    L  G+ RQ  L +             +R + L KK K+  
Sbjct: 223 VVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFL 282

Query: 228 SYI--NNIKQFKWFSKV-SCENLLVL 250
             I   N ++  + +K  SC +L VL
Sbjct: 283 GRIVARNSRKMAFRAKSKSCHDLSVL 308

May play an important role in cardiac antiarrhythmia via the strong suppression of voltage-gated L-type Ca(2+) currents. Regulates voltage-dependent L-type calcium channel subunit alpha-1C trafficking to the cell membrane (By similarity). Inhibits cardiac hypertrophy through the calmodulin-dependent kinase II (CaMKII) pathway. Inhibits phosphorylation and activation of CAMK2D.

Homo sapiens (taxid: 9606)

>sp|O35929|REM1_MOUSE GTP-binding protein REM 1 OS=Mus musculus GN=Rem1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181
            +VIVYS+ +R +F+ A ++   L  +       +ILV NKADL R R+V+  +G+  A 
Sbjct: 155 AYVIVYSIADRSSFESASELRIQLRRTHQANHVPIILVGNKADLARCREVSVEEGRACAV 214

Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQAGLNK-----------KRNKLLAKKQKKMASYI 230
            +  KF+ETS  L +   EL  G+ RQ  L +           +R   L ++ ++  + +
Sbjct: 215 VFDCKFIETSATLQHNVTELFEGVVRQLRLRRQDNAAPETPSPRRRASLGQRARRFLARL 274

Query: 231 N----NIKQFKWFSKVSCENLLVL 250
                  +  K  SK SC NL VL
Sbjct: 275 TARSARRRALKARSK-SCHNLAVL 297

Promotes endothelial cell sprouting and actin cytoskeletal reorganization (By similarity). May be involved in angiogenesis. May function in Ca(2+) signaling.

Mus musculus (taxid: 10090)

>sp|Q5R988|RAP2A_PONAB Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ ++G+ LA  
Sbjct: 78  FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEE 137

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           WG  F+ETS       DEL   I RQ
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. In its active form interacts with and regulates several effectors including MAP4K4, MINK1 and TNIK. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it is part of several signaling cascades and may regulate cytoskeletal rearrangements, cell migration, cell adhesion and cell spreading.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
328722064	432	PREDICTED: hypothetical protein LOC10056	0.46	0.266	0.460	5e-24
170065034	501	conserved hypothetical protein [Culex qu	0.492	0.245	0.48	4e-23
194881125	742	GG21907 [Drosophila erecta] gi|190657886	0.56	0.188	0.433	4e-23
24655095	740	Rgk2 [Drosophila melanogaster] gi|232402	0.56	0.189	0.433	4e-23
195487424	743	GE11981 [Drosophila yakuba] gi|194178004	0.56	0.188	0.433	4e-23
194754601	744	GF11972 [Drosophila ananassae] gi|190620	0.56	0.188	0.433	7e-23
157120243	587	hypothetical protein AaeL_AAEL001571 [Ae	0.54	0.229	0.419	9e-23
242017925	621	conserved hypothetical protein [Pediculu	0.46	0.185	0.487	2e-22
198458177	733	GA13469 [Drosophila pseudoobscura pseudo	0.56	0.190	0.446	2e-22
195153877	750	GL17084 [Drosophila persimilis] gi|19411	0.56	0.186	0.446	2e-22

>gi|328722064|ref|XP_003247471.1| PREDICTED: hypothetical protein LOC100569464 [Acyrthosiphon pisum]

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 78/115 (67%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           +E    TY+P+VF+++YSV++ ++F  AE ML  LW  +YI  + VILV NK+DLER R+
Sbjct: 292 IETLCSTYNPNVFIVMYSVVDERSFDMAEQMLLFLWKGEYIHTRGVILVGNKSDLERTRK 351

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKK 225
           +  + G+ LAY+W  KF+ETS G+ +  D+LLVGI  Q  LN  R ++   K+KK
Sbjct: 352 IQTNVGRNLAYSWNCKFIETSSGMDHNVDKLLVGILAQIKLNPLRERMYNSKRKK 406

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065034|ref|XP_001867775.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167882178|gb|EDS45561.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 2/125 (1%)

Query: 106 PFCSQVEN-FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 164
           P C   E  F  TYH D+FV+VYSV++R +FKKAE +L  L D + +  + VILV NK D
Sbjct: 162 PACEMSEEAFCSTYHIDIFVVVYSVVDRGSFKKAEKILHFLRDGEMLLTRGVILVGNKTD 221

Query: 165 LERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR-NKLLAKKQ 223
           LER+R+V     ++LA   G KF+ETS G+ Y  DELLVGI  Q  LN +R N+L  K++
Sbjct: 222 LERQREVQTQVARRLAKEIGAKFIETSSGMDYNVDELLVGITAQVKLNPQRVNRLTDKQR 281

Query: 224 KKMAS 228
             +A 
Sbjct: 282 NSIAG 286

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194881125|ref|XP_001974699.1| GG21907 [Drosophila erecta] gi|190657886|gb|EDV55099.1| GG21907 [Drosophila erecta]

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R +F+ AE+++  LW   Y  +KAVILV NKADL R R 
Sbjct: 593 VENSLSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL 652

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN-KLLAKKQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L +KR  K  A K K   ++
Sbjct: 653 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKATASKMKTSRTH 712

Query: 230 INNIKQFKWFSKV---------SCENLLVL 250
           I+     +   K+         SCENL VL
Sbjct: 713 ISLHLAKELLQKICLSDISKSKSCENLHVL 742

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24655095|ref|NP_611342.1| Rgk2 [Drosophila melanogaster] gi|23240242|gb|AAF57675.3| Rgk2 [Drosophila melanogaster] gi|41058182|gb|AAR99135.1| RE10036p [Drosophila melanogaster]

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R +F+ AE+++  LW   Y  +KAVILV NKADL R R 
Sbjct: 591 VENSLSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL 650

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN-KLLAKKQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L +KR  K  A K K   ++
Sbjct: 651 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKATASKMKTSRTH 710

Query: 230 INNIKQFKWFSKV---------SCENLLVL 250
           I+     +   K+         SCENL VL
Sbjct: 711 ISLHLAKELLQKICLSDISKSKSCENLHVL 740

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195487424|ref|XP_002091903.1| GE11981 [Drosophila yakuba] gi|194178004|gb|EDW91615.1| GE11981 [Drosophila yakuba]

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R +F+ AE+++  LW   Y  +KAVILV NKADL R R 
Sbjct: 594 VENSLSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL 653

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN-KLLAKKQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L +KR  K  A K K   ++
Sbjct: 654 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKATASKMKTSRTH 713

Query: 230 INNIKQFKWFSKV---------SCENLLVL 250
           I+     +   K+         SCENL VL
Sbjct: 714 ISLHLAKELLQKICLSDISKSKSCENLHVL 743

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754601|ref|XP_001959583.1| GF11972 [Drosophila ananassae] gi|190620881|gb|EDV36405.1| GF11972 [Drosophila ananassae]

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R +F+ AE+++  LW   Y  +KAVILV NKADL R R 
Sbjct: 595 VENSLSTYEPHGCVVVFSVVDRGSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL 654

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN-KLLAKKQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L +KR  K  A K K   ++
Sbjct: 655 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKATASKMKTSRTH 714

Query: 230 INNIKQFKWFSKV---------SCENLLVL 250
           I+     +   K+         SCENL VL
Sbjct: 715 ISLHLAKELLQKICLSDISKSKSCENLHVL 744

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120243|ref|XP_001653567.1| hypothetical protein AaeL_AAEL001571 [Aedes aegypti] gi|108883080|gb|EAT47305.1| AAEL001571-PA [Aedes aegypti]

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 20/155 (12%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+VYS+++R TF+ AE++L  LW  KY  EKAVI+ ANK+DL R R 
Sbjct: 438 VENSLSTYEPHACVVVYSIVDRNTFRVAEEILNYLWSEKYTKEKAVIIAANKSDLARSRV 497

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL-----LAKKQKK 225
           +  S+GK+LA +   KF+ETS G+ +  DELLVG+ +Q  L ++R K      L   + +
Sbjct: 498 INTSEGKQLATSREAKFIETSSGIQHNVDELLVGVLKQIRLKEQREKRASATNLRNSRTQ 557

Query: 226 MASYI----------NNIKQFKWFSKVSCENLLVL 250
           M+ +I           +I + K     SCENL VL
Sbjct: 558 MSLHIAKEILHKICLTDITKSK-----SCENLHVL 587

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017925|ref|XP_002429434.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514366|gb|EEB16696.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 77/119 (64%), Gaps = 4/119 (3%)

Query: 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 169
            VEN + TY P   V+VYSV ++ TF+ AED+L  LW   Y  EK+VILV NK+DL R R
Sbjct: 463 SVENCLATYAPHACVVVYSVDDKNTFQVAEDILNYLWRENYTHEKSVILVGNKSDLARSR 522

Query: 170 QVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMAS 228
            ++ +DGK LA +   KF+ETS G+ +  DELLVGI +Q+ L + R     KKQK+  S
Sbjct: 523 VISTADGKSLAASRDSKFIETSSGIQHNVDELLVGILKQSRLKETR----EKKQKRRGS 577

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198458177|ref|XP_001360942.2| GA13469 [Drosophila pseudoobscura pseudoobscura] gi|198136248|gb|EAL25517.2| GA13469 [Drosophila pseudoobscura pseudoobscura]

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 90/150 (60%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R TF+ AE+++  LW  KY  +KAVILV NKADL R R 
Sbjct: 584 VENSLSTYEPHGCVVVFSVVDRGTFRVAEEIINYLWQEKYTKDKAVILVGNKADLARARL 643

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAK-KQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L + R K   + K K   ++
Sbjct: 644 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEVREKKATQSKMKHSRTH 703

Query: 230 IN-----NIKQFKWFSKV----SCENLLVL 250
           I+      I Q    S +    SCENL VL
Sbjct: 704 ISLHLAKEILQKICLSDISKSKSCENLHVL 733

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153877|ref|XP_002017850.1| GL17084 [Drosophila persimilis] gi|194113646|gb|EDW35689.1| GL17084 [Drosophila persimilis]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 90/150 (60%), Gaps = 10/150 (6%)

Query: 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
           VEN + TY P   V+V+SV++R TF+ AE+++  LW  KY  +KAVILV NKADL R R 
Sbjct: 601 VENSLSTYEPHGCVVVFSVVDRGTFRVAEEIINYLWQEKYTKDKAVILVGNKADLARARL 660

Query: 171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAK-KQKKMASY 229
           +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q  L + R K   + K K   ++
Sbjct: 661 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEVREKKATQSKMKHSRTH 720

Query: 230 IN-----NIKQFKWFSKV----SCENLLVL 250
           I+      I Q    S +    SCENL VL
Sbjct: 721 ISLHLAKEILQKICLSDISKSKSCENLHVL 750

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
FB|FBgn0085419	740	Rgk2 "Rad, Gem/Kir family memb	0.392	0.132	0.5	2.9e-20
FB|FBgn0260658	1418	CG42541 [Drosophila melanogast	0.472	0.083	0.453	5e-18
FB|FBgn0085426	449	Rgk3 "Rad, Gem/Kir family memb	0.352	0.195	0.443	1.9e-14
UNIPROTKB|F1NUA6	209	REM1 "Uncharacterized protein"	0.352	0.421	0.375	6.4e-12
ZFIN|ZDB-GENE-041024-1	183	rap2c "RAP2C, member of RAS on	0.344	0.469	0.395	1.3e-11
UNIPROTKB|P10114	183	RAP2A "Ras-related protein Rap	0.344	0.469	0.395	2.2e-11
UNIPROTKB|E1BNQ3	183	RAP2A "Uncharacterized protein	0.344	0.469	0.383	4.5e-11
UNIPROTKB|J9P6K0	183	RAP2A "Uncharacterized protein	0.344	0.469	0.383	4.5e-11
UNIPROTKB|Q5R988	183	RAP2A "Ras-related protein Rap	0.344	0.469	0.383	4.5e-11
MGI|MGI:97855	183	Rap2a "RAS related protein 2a"	0.344	0.469	0.383	4.5e-11

FB|FBgn0085419 Rgk2 "Rad, Gem/Kir family member 2" [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 49/98 (50%), Positives = 67/98 (68%)

Query:   111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170
             VEN + TY P   V+V+SV++R +F+ AE+++  LW   Y  +KAVILV NKADL R R 
Sbjct:   591 VENSLSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL 650

Query:   171 VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
             +T  +GK LA +   KF+ETS G+ +  DELLVGI +Q
Sbjct:   651 ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQ 688

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0260658 CG42541 [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 54/119 (45%), Positives = 71/119 (59%)

Query:    91 VYSDTNHTQRCLTPMPFCSQ-VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK 149
             V  D   T   +   P C    E F  TY+ D+FV+VYSVI+R TF  AE +L+ L +++
Sbjct:  1051 VLVDNIETDLEIIDHPACEMSTEAFCATYNIDLFVVVYSVIDRNTFAAAERVLQYLKENE 1110

Query:   150 YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
              +  +  ILVANK DL+R R VT   G+K+A     KF+ETS GL +  DELLVGI  Q
Sbjct:  1111 MLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIETSSGLDHNVDELLVGIVAQ 1169

GO:0005525 "GTP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

FB|FBgn0085426 Rgk3 "Rad, Gem/Kir family member 3" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 39/88 (44%), Positives = 56/88 (63%)

Query:   121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
             D F++VYS I++++F +A+ +L  L D   +  +  ILVANK DL R R V+  DGK +A
Sbjct:   303 DAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVA 362

Query:   181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
               +G KF+E SVG+ +  DELL G   Q
Sbjct:   363 CTFGAKFIEVSVGINHNCDELLAGTLTQ 390

GO:0005525 "GTP binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003924 "GTPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

UNIPROTKB|F1NUA6 REM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 33/88 (37%), Positives = 54/88 (61%)

Query:   121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
             + +VIVYS+ +R +F+ A ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct:    68 NAYVIVYSITDRSSFESASELRIHLRRARQAEDIPIILVGNKSDLVRCREVSIEEGRACA 127

Query:   181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
               +  KF+ETS  L +  DEL  G+ RQ
Sbjct:   128 VVFDCKFIETSAALQHNVDELFEGVVRQ 155

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-041024-1 rap2c "RAP2C, member of RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+    M   +   K   +  +ILV NK DLE  R+V  SDG+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIRPMRDQIVRVKRFEKVPLILVGNKVDLESEREVAGSDGRALAQE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFIETSAKSKSMVDELFAEIVRQ 163

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P10114 RAP2A "Ras-related protein Rap-2a" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/86 (39%), Positives = 50/86 (58%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ S+G+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

GO:0005525 "GTP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IDA

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

GO:0032486 "Rap protein signal transduction" evidence=ISS

GO:0045184 "establishment of protein localization" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

UNIPROTKB|E1BNQ3 RAP2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ ++G+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0032486 "Rap protein signal transduction" evidence=IEA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|J9P6K0 RAP2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ ++G+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q5R988 RAP2A "Ras-related protein Rap-2a" [Pongo abelii (taxid:9601)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ ++G+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

GO:0003924 "GTPase activity" evidence=ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0031954 "positive regulation of protein autophosphorylation" evidence=ISS

GO:0032486 "Rap protein signal transduction" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0046328 "regulation of JNK cascade" evidence=ISS

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=ISS

MGI|MGI:97855 Rap2a "RAS related protein 2a" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query:   123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
             F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ ++G+ LA  
Sbjct:    78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEE 137

Query:   183 WGVKFVETSVGLVYKTDELLVGIARQ 208
             WG  F+ETS       DEL   I RQ
Sbjct:   138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0030336 "negative regulation of cell migration" evidence=IDA

GO:0031532 "actin cytoskeleton reorganization" evidence=ISO

GO:0031954 "positive regulation of protein autophosphorylation" evidence=ISO;IDA

GO:0032486 "Rap protein signal transduction" evidence=IDA

GO:0034613 "cellular protein localization" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=ISO

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO;IDA

GO:0055038 "recycling endosome membrane" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	250
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-34
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-16
pfam00071	162	pfam00071, Ras, Ras family	2e-15
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-15
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-15
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	7e-15
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-14
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-13
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-12
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-12
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-11
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-11
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-10
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-10
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-10
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-09
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-09
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-09
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-08
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-08
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-08
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-08
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	7e-08
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-08
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-08
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-07
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-07
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-07
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-07
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-07
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-06
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-06
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-06
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-05
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-05
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-05
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	8e-05
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-04
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-04
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	0.001
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	0.001
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	0.002
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.003

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  122 bits (308), Expect = 3e-34
 Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 24/160 (15%)

Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
            C QV         D +VIVYSV +R +F+KA ++   L  ++   +  +ILV NK+DL 
Sbjct: 68  SCMQV--------GDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLV 119

Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL-------- 218
           R R+V+  +G+  A  +  KF+ETS  L +  DEL  GI RQ  L +   +         
Sbjct: 120 RSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNTRRMASR 179

Query: 219 -----LAKKQKKMASYI---NNIKQFKWFSKVSCENLLVL 250
                + KK K+  S I   NN          SC +L VL
Sbjct: 180 KRRESITKKAKRFLSKIVAKNNKGMAFKQKSKSCHDLSVL 219

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 73.7 bits (182), Expect = 2e-16
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 121 DVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK 177
           D F++VYS+  R++F++ +   + +  + D + +    ++LV NK DLE  RQV+  +G+
Sbjct: 72  DGFILVYSITSRESFEEIKNIREQILRVKDKEDV---PIVLVGNKCDLENERQVSTEEGE 128

Query: 178 KLAYAWGVKFVETSVGLVYKTDELLVGIARQA 209
            LA  WG  F+ETS       DEL   + R+ 
Sbjct: 129 ALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKL 179
             F++VY +  R +F+  +  L+ +   ++  E   I LV NK DLE +R V+  +G+ L
Sbjct: 73  QGFLLVYDITSRDSFENVKKWLEEI--LRHADENVPIVLVGNKCDLEDQRVVSTEEGEAL 130

Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQA 209
           A   G+ F+ETS       +E    +AR+ 
Sbjct: 131 AKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           + F++VYS+ +R++F++     + +   K   +  ++LV NK DLE  R V+  +GK+LA
Sbjct: 75  EGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENERVVSTEEGKELA 134

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQA 209
             WG  F+ETS       DE    + R+ 
Sbjct: 135 RQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           + F++VYS+ +R++F++ +   + +   K   +  ++LV NK DLE  R V+  +GK+LA
Sbjct: 73  EGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA 132

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQA 209
             WG  F+ETS       DE    + R+ 
Sbjct: 133 RQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 30/86 (34%), Positives = 51/86 (59%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+I YSV +R +F++A +  + +   +   +  ++LV NK DLE++RQVT  +G+ LA  
Sbjct: 77  FIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLARE 136

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           +   F ETS  L +  D+   G+ R+
Sbjct: 137 FNCPFFETSAALRFYIDDAFHGLVRE 162

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 8/74 (10%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDS--KYIGEKAV--ILVANKADLERRRQVTHSDGKK 178
           +++VYSV  RK+F    +++K ++D     +G+++V  +LV NK+DL   RQV+  +GKK
Sbjct: 76  YILVYSVTSRKSF----EVVKVIYDKILDMLGKESVPIVLVGNKSDLHMERQVSAEEGKK 131

Query: 179 LAYAWGVKFVETSV 192
           LA +WG  F+E+S 
Sbjct: 132 LAESWGAAFLESSA 145

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F +VYS+  +++F   +D+ + +   K   +  +ILV NK DLE  R V+  +G+ LA  
Sbjct: 76  FALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQ 135

Query: 183 WG-VKFVETSVGLVYKTDELLVGIARQ 208
           WG   F+ETS       DE+   + RQ
Sbjct: 136 WGNCPFLETSAKSKINVDEIFYDLVRQ 162

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++VYS++ ++TF+  + M   +   K   +  +ILV NK DLE  R+V+ ++G+ LA  
Sbjct: 76  FIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE 135

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           WG  F+ETS       +EL   I RQ
Sbjct: 136 WGCPFMETSAKSKTMVNELFAEIVRQ 161

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQVTHSDGKKL 179
           D FV+VYS+ +R +F     +L+ + + K   GE  VILV NKADL   RQV+  +G+KL
Sbjct: 74  DGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQVSTEEGQKL 133

Query: 180 AYAWGVKFVETSVGLVY 196
           A   G  F E S    Y
Sbjct: 134 ALELGCLFFEVSAAENY 150

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKL 179
              ++VY V  R++F+  +  L  L   +Y      I LV NK+DLE  RQV+  + ++ 
Sbjct: 74  HGAILVYDVTNRESFENLDKWLNEL--KEYAPPNIPIILVGNKSDLEDERQVSTEEAQQF 131

Query: 180 AYAWGVKFVETS 191
           A   G+ F ETS
Sbjct: 132 AKENGLLFFETS 143

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ VYS+  R +F++     + +   K      +ILV NK DL+  RQV+  +G++LA +
Sbjct: 80  FLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS 139

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKK 225
           +G+ F+ETS       DE    + R+     K +    K++KK
Sbjct: 140 FGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQKKK 182

Length = 189

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 31/86 (36%), Positives = 45/86 (52%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           FV+VYS+  + TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  
Sbjct: 76  FVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 135

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           WG  F+ETS       +E+   + RQ
Sbjct: 136 WGCAFLETSAKAKINVNEIFYDLVRQ 161

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 56.4 bits (137), Expect = 4e-10
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAY 181
            ++VY +  R++F+  E+ LK L   +Y     VI LV NK+DLE +RQV+  + +  A 
Sbjct: 76  ALLVYDITNRESFENLENWLKEL--REYASPNVVIMLVGNKSDLEEQRQVSREEAEAFAE 133

Query: 182 AWGVKFVETS 191
             G+ F ETS
Sbjct: 134 EHGLPFFETS 143

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + + K+F+  ++ ++ +   ++  E    +LV NK D+E +R V+  +G+ LA  
Sbjct: 80  ILVYDITDEKSFENIKNWMRNI--DEHASEDVERMLVGNKCDMEEKRVVSKEEGEALARE 137

Query: 183 WGVKFVETS 191
           +G+KF+ETS
Sbjct: 138 YGIKFLETS 146

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           ++VY +   ++F+KA+  +K L          + L  NKADLE +RQV+  + ++ A   
Sbjct: 78  IVVYDITSEESFEKAKSWVKEL-QEHGPPNIVIALAGNKADLESKRQVSTEEAQEYADEN 136

Query: 184 GVKFVETSVGLVYKT----DELLVGIARQ 208
           G+ F+ETS     KT    +EL   IAR+
Sbjct: 137 GLLFMETSA----KTGENVNELFTEIARK 161

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++V+SV +R +F++ +     +   K   E  +ILV NKADLE +RQV+  +G++LA  
Sbjct: 77  FLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRQVSREEGQELARQ 136

Query: 183 WGVKFVETSVGLVYKTDELLVGIAR 207
             + ++ETS       D+    + R
Sbjct: 137 LKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++VYSV    +  +  ++ + +   K      ++LV NKADLE  RQV+  DG  L+  
Sbjct: 76  FLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ 135

Query: 183 WG-VKFVETSVGLVYKTDELLVGIARQ 208
           WG V F ETS       DE+ + + RQ
Sbjct: 136 WGNVPFYETSARKRTNVDEVFIDLVRQ 162

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 11/156 (7%)

Query: 55  IVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD--VFFIVYSDTNHTQRCLTPMPFCSQVE 112
           + HSD    Q+  T    C  V   V        V   ++      Q   + M     VE
Sbjct: 19  MFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSAG--QELFSDM-----VE 71

Query: 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 172
           N  +   P V  +VY V    +F      +  +    +      +LV NK DL  RR+V 
Sbjct: 72  NVWE--QPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCDLTDRREVD 129

Query: 173 HSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
            +  + LA A  +KF ETS       +   + +AR 
Sbjct: 130 AAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLA 180
           V V+VY +  R++F   +  +  + D +  G   +I LV NK DL  +RQV+  +G+K A
Sbjct: 75  VAVVVYDITNRQSFDNTDKWIDDVRDER--GNDVIIVLVGNKTDLSDKRQVSTEEGEKKA 132

Query: 181 YAWGVKFVETS 191
                 F+ETS
Sbjct: 133 KENNAMFIETS 143

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +  +F+K +  +K L      G   ++++V NK DLER+R V+ S+ ++ A +
Sbjct: 77  ILVYDITDADSFQKVKKWIKELKQM--RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKS 134

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
            G K  ETS       +EL + +A++
Sbjct: 135 VGAKHFETSAKTGKGIEELFLSLAKR 160

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 26/88 (29%), Positives = 47/88 (53%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           + F++V+S+ + ++F    +  + +   K      ++LV NK DLE +RQV+  +   LA
Sbjct: 73  EGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKRQVSVEEAANLA 132

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
             WGV +VETS       D++   + R+
Sbjct: 133 EQWGVNYVETSAKTRANVDKVFFDLVRE 160

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           +IVY V ++++F   +  L+ +   +Y  E    +LV NK DL  ++ V +++ K+ A  
Sbjct: 79  IIVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTDKKVVDYTEAKEFADE 136

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
            G+ F+ETS       +E  + +AR+
Sbjct: 137 LGIPFLETSAKNATNVEEAFMTMARE 162

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAY 181
           ++V+ +  R++F+   D L+      +I       ILV +K DLE +RQVT  + +KLA 
Sbjct: 80  LLVFDITNRESFEHVHDWLEEA--RSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK 137

Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL 218
             G+K++ETS       +E    + ++     KR +L
Sbjct: 138 DLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGEL 174

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+++  RK+F+      + +   K   +  ++LV NK DL  R  V+   G+ LA +
Sbjct: 76  FLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSTRQGQDLAKS 134

Query: 183 WGVKFVETS 191
           +G+ ++ETS
Sbjct: 135 YGIPYIETS 143

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R+TF      L+     ++      I L+ NK DLE RR+V++ +G+  A  
Sbjct: 81  LLVYDITRRETFNHLTSWLEDA--RQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFARE 138

Query: 183 WGVKFVETSVGLVYKTDELLVGIAR 207
            G+ F+ETS       +E  +  A+
Sbjct: 139 HGLIFMETSAKTASNVEEAFINTAK 163

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 125 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYAW 183
           +VY + ++ TF+  E  LK L D  +     VI LV NK+DL   R V   + K  A   
Sbjct: 81  LVYDITKKSTFENVERWLKELRD--HADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN 138

Query: 184 GVKFVETS 191
           G+ F+ETS
Sbjct: 139 GLSFIETS 146

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +   ++F    + +  L    Y     ++L+ NKADL  +R+V+    ++LA  
Sbjct: 90  FLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNKADLPDQREVSERQARELADK 149

Query: 183 WGVKFVETSVGL---VYKTDELLVGI 205
           +G+ + ETS      V K  E L+ +
Sbjct: 150 YGIPYFETSAATGQNVEKAVETLLDL 175

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWD------SKYIGEKAVILVANKADLERRRQVTHSDG 176
           F++VYS+  +++ ++    LK +++         + +  ++LV NK D    R+V+ S+G
Sbjct: 76  FILVYSITSKQSLEE----LKPIYELICEIKGNNLEKIPIMLVGNKCDESPSREVSSSEG 131

Query: 177 KKLAYAWGVKFVETSVGLVYKTDEL 201
             LA  W   F+ETS    +   EL
Sbjct: 132 AALARTWNCAFMETSAKTNHNVQEL 156

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           F++VYS+  R TF++ E   + +   K     +  +++V NK D    R+V+  +G  LA
Sbjct: 74  FILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA 133

Query: 181 YAWGVKFVETS------VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKK 225
              G +F+E S      V   + T    +   RQ G   K      K++KK
Sbjct: 134 RRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKK 184

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
           ++VY +  R++F     +   L D++ +      +ILV NK DLE  R+VT  +  + A 
Sbjct: 77  LLVYDITSRESF---NALTNWLTDARTLASPDIVIILVGNKKDLEDDREVTFLEASRFAQ 133

Query: 182 AWGVKFVETS 191
             G+ F+ETS
Sbjct: 134 ENGLLFLETS 143

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 123 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
           F+++Y +   ++F   +D    +KT  WD+       VILV NK D+E  R V+   G++
Sbjct: 77  FILMYDITNEESFNAVQDWSTQIKTYSWDNA-----QVILVGNKCDMEDERVVSAERGRQ 131

Query: 179 LAYAWGVKFVETS 191
           LA   G +F E S
Sbjct: 132 LADQLGFEFFEAS 144

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI--LVANKADLERRRQVTHSDGKKLAY 181
           ++VY V  R TF   +  L  L    Y      +  LV NK D E R +VT  +G+K A 
Sbjct: 77  ILVYDVTRRDTFDNLDTWLNEL--DTYSTNPDAVKMLVGNKIDKENR-EVTREEGQKFAR 133

Query: 182 AWGVKFVETS----VGLVYKTDELLVGI 205
              + F+ETS    +G+    +EL+  I
Sbjct: 134 KHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV--ANKADLERRRQVTHSDGKKLAY 181
           +++Y V  + +F   +++   L +     +  V+++   NKAD+   R V   DG++LA 
Sbjct: 78  LLLYDVTNKSSF---DNIRAWLTEILEYAQSDVVIMLLGNKADMSGERVVKREDGERLAK 134

Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
            +GV F+ETS       +     +A++
Sbjct: 135 EYGVPFMETSAKTGLNVELAFTAVAKE 161

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA-NKADLERRRQVTHSDGKKLAYA 182
           ++VY + +R+TF   +  L+ L D  +     VI++A NK+DL   R V   DG+ LA  
Sbjct: 89  LLVYDITKRQTFDNVQRWLRELRD--HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK 146

Query: 183 WGVKFVETS 191
            G+ F+ETS
Sbjct: 147 EGLSFLETS 155

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +++TF      +K +   KY  E A ++LV NK D E  R++T   G+K A  
Sbjct: 77  ILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 134

Query: 183 -WGVKFVETSVGLVYKTDELLV----GIARQAGLNKKRNKL 218
             G++F E S    +  DE+ +     I ++  L+  RN+L
Sbjct: 135 ITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNEL 175

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH-SDGKKL 179
           D+ ++V    +R++ + A+ ++             +ILV NK DL   R+V      ++L
Sbjct: 77  DLILLVVDSTDRESEEDAKLLIL---RRLRKEGIPIILVGNKIDLLEEREVEELLRLEEL 133

Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIAR 207
           A   GV   E S       DEL   +  
Sbjct: 134 AKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 19/88 (21%)

Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
             DVF++ +SV    +F+  +      W      Y     +ILV  K DL          
Sbjct: 71  QTDVFLLCFSVDSPSSFENVKTK----WYPEIKHYCPNVPIILVGTKIDLRDDGNTLKKL 126

Query: 166 -ERRRQVTHSDGKKLAYAWG-VKFVETS 191
            ++++ +T  +G+KLA   G VK++E S
Sbjct: 127 EKKQKPITPEEGEKLAKEIGAVKYMECS 154

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 124 VIVYSVIERKTF----KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
           ++VY V +R++F       ++M +       +    V++ ANK DL + R V+  +G+  
Sbjct: 77  LLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW 136

Query: 180 AYAWGVKFVETS 191
           A + G K+ ETS
Sbjct: 137 AESKGFKYFETS 148

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F +VYSV + ++F++ + + + + + K      +++V NK D    RQV  +D     
Sbjct: 72  DAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAERQVEAADALSTV 131

Query: 181 -YAWGVKFVETSVGLVYKTDELLVGIARQAGL 211
              W   FVE S        E+   + +QA L
Sbjct: 132 ELDWNNGFVEASAKDNENVTEVFKELLQQANL 163

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 125 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAYA 182
           +VY +   +++   + ++K + D      + V  IL+ NKAD E++RQV    G KLA  
Sbjct: 78  LVYDISSERSY---QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE 134

Query: 183 WGVKFVETSVGLVYKTDELLVGIA 206
           +G+ F ETS        E    + 
Sbjct: 135 YGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
           ++VY +  R+TF      L+   D++        ++L+ NK DL  RR V+  +G++ A 
Sbjct: 83  LLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 139

Query: 182 AWGVKFVETSVGLVYKTDELLVGIA 206
             G+ F+E S       +E  +  A
Sbjct: 140 EHGLIFMEASAKTAQNVEEAFIKTA 164

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           +I Y +  R +F+     ++ +   KY     V +L+ NK DLE +R+V   +   LA  
Sbjct: 80  IIAYDITRRSSFESVPHWIEEV--EKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEH 137

Query: 183 WGVKFV-ETSVGLVYKTDELLVGIARQ 208
           +G+  V ETS       +E  + +A +
Sbjct: 138 YGILAVLETSAKESSNVEEAFLLMATE 164

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIG--EKAVILVANKADLERRRQVTHSDGKKLAY 181
           ++VY +  R T+      L    D++ +      + L+ NKADLE +R VT+ + K+ A 
Sbjct: 79  LMVYDITRRSTYNHLSSWLT---DARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD 135

Query: 182 AWGVKFVETS 191
             G+ F+E S
Sbjct: 136 ENGLLFLECS 145

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R++F+     ++ + + +  G+  +I LV NK DL   R+VT+ +G + A  
Sbjct: 57  IVVYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQE 114

Query: 183 WGVKFVETS 191
           +   F ETS
Sbjct: 115 YNTMFHETS 123

Length = 176

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           ++VY V  R+TF    D+     +     +  V +LV NK D E  R V+  +G  LA  
Sbjct: 90  ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE 149

Query: 183 WGVKFVETS 191
            G  F+E S
Sbjct: 150 HGCLFLECS 158

Length = 211

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           ++VY V   ++F   +  L+ +  +     K  +LV NK D   R+ V   D  K A   
Sbjct: 83  IVVYDVTNGESFVNVKRWLQEIEQNCDDVCK--VLVGNKNDDPERKVVETEDAYKFAGQM 140

Query: 184 GVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINN 232
           G+   ETS       +E+   I       KK N    ++Q++       
Sbjct: 141 GISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLP 189

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSD 175
           Y      +VY +   ++F+  ED L  +       E    ++LV NK DLE  RQVT   
Sbjct: 72  YGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEHNRQVTAEK 131

Query: 176 GKKLAYAWG 184
             + A    
Sbjct: 132 HARFAQEND 140

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
KOG0078|consensus	207		100.0
KOG0098|consensus	216		100.0
KOG0080|consensus	209		100.0
KOG0394|consensus	210		100.0
KOG0079|consensus	198		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0091|consensus	213		100.0
KOG0087|consensus	222		100.0
KOG0093|consensus	193		100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0088|consensus	218		100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0081|consensus	219		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0086|consensus	214		100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.98
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.98
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.98
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.98
PTZ00369	189	Ras-like protein; Provisional	99.98
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.98
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
KOG0083|consensus	192		99.97
KOG0095|consensus	213		99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
PLN03108	210	Rab family protein; Provisional	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
KOG0097|consensus	215		99.96
KOG0395|consensus	196		99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
PLN03118	211	Rab family protein; Provisional	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.95
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.94
KOG0393|consensus	198		99.94
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.94
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.94
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
KOG4252|consensus	246		99.93
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.92
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.92
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.92
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.92
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.92
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.91
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.91
PTZ00099	176	rab6; Provisional	99.9
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.9
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.9
PLN00023	334	GTP-binding protein; Provisional	99.9
KOG3883|consensus	198		99.9
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.89
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
KOG0073|consensus	185		99.89
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.88
KOG0070|consensus	181		99.88
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.88
PRK12299	335	obgE GTPase CgtA; Reviewed	99.87
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.87
PRK15494	339	era GTPase Era; Provisional	99.87
COG1100	219	GTPase SAR1 and related small G proteins [General	99.87
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.85
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.85
PRK04213	201	GTP-binding protein; Provisional	99.84
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.84
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.83
KOG0071|consensus	180		99.83
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.83
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.82
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.82
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.82
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.82
KOG4423|consensus	229		99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.81
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.81
KOG0096|consensus	216		99.8
PRK11058	426	GTPase HflX; Provisional	99.8
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.8
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.8
PRK00089	292	era GTPase Era; Reviewed	99.79
PRK12297	424	obgE GTPase CgtA; Reviewed	99.79
KOG0075|consensus	186		99.79
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.79
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.79
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.78
PRK03003	472	GTP-binding protein Der; Reviewed	99.78
PRK12298	390	obgE GTPase CgtA; Reviewed	99.78
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.77
KOG0076|consensus	197		99.77
COG1159	298	Era GTPase [General function prediction only]	99.77
PRK12296	500	obgE GTPase CgtA; Reviewed	99.76
KOG1673|consensus	205		99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.76
cd00881	189	GTP_translation_factor GTP translation factor fami	99.74
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.73
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
KOG0072|consensus	182		99.71
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.71
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.71
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.7
KOG0074|consensus	185		99.69
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.69
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.69
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.68
PRK00093	435	GTP-binding protein Der; Reviewed	99.68
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.67
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.67
KOG1707|consensus	625		99.66
COG1160	444	Predicted GTPases [General function prediction onl	99.65
COG1160	444	Predicted GTPases [General function prediction onl	99.65
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.64
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.63
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.63
CHL00189	742	infB translation initiation factor 2; Provisional	99.62
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.62
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.61
PRK05306	787	infB translation initiation factor IF-2; Validated	99.6
COG0486	454	ThdF Predicted GTPase [General function prediction	99.6
PRK05433	600	GTP-binding protein LepA; Provisional	99.6
COG2229	187	Predicted GTPase [General function prediction only	99.54
PRK04004	586	translation initiation factor IF-2; Validated	99.54
PRK12317	425	elongation factor 1-alpha; Reviewed	99.54
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.54
COG2262	411	HflX GTPases [General function prediction only]	99.52
KOG1423|consensus	379		99.51
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.51
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.51
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.5
KOG0077|consensus	193		99.48
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.48
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.48
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.48
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.47
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.46
KOG1489|consensus	366		99.45
PRK10218	607	GTP-binding protein; Provisional	99.44
COG0218	200	Predicted GTPase [General function prediction only	99.44
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.43
COG0536	369	Obg Predicted GTPase [General function prediction	99.4
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.39
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.38
KOG1532|consensus	366		99.38
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.36
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.34
COG1084	346	Predicted GTPase [General function prediction only	99.32
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.3
PRK09866	741	hypothetical protein; Provisional	99.29
KOG1191|consensus	531		99.29
COG1163	365	DRG Predicted GTPase [General function prediction	99.29
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.27
PRK12736	394	elongation factor Tu; Reviewed	99.27
PRK12735	396	elongation factor Tu; Reviewed	99.26
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.26
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.25
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.25
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.24
PRK13351	687	elongation factor G; Reviewed	99.24
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.2
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.19
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.19
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.17
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.17
KOG1490|consensus	620		99.17
PRK13768	253	GTPase; Provisional	99.17
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.16
CHL00071	409	tufA elongation factor Tu	99.14
PRK09602	396	translation-associated GTPase; Reviewed	99.14
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.13
PLN00043	447	elongation factor 1-alpha; Provisional	99.13
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.13
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.12
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.1
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.1
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.09
PLN03126	478	Elongation factor Tu; Provisional	99.09
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.09
COG3596	296	Predicted GTPase [General function prediction only	99.08
KOG0090|consensus	238		99.07
KOG1707|consensus	625		99.07
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.07
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.05
PRK14845	1049	translation initiation factor IF-2; Provisional	99.05
PRK00049	396	elongation factor Tu; Reviewed	99.04
PLN03127	447	Elongation factor Tu; Provisional	99.04
KOG0705|consensus	749		99.0
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.99
KOG3905|consensus	473		98.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.94
PRK12740	668	elongation factor G; Reviewed	98.93
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.92
PTZ00141	446	elongation factor 1- alpha; Provisional	98.9
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.88
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.86
PRK12739	691	elongation factor G; Reviewed	98.86
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.85
KOG1145|consensus	683		98.84
PRK12288	347	GTPase RsgA; Reviewed	98.84
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.84
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.83
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.83
PTZ00258	390	GTP-binding protein; Provisional	98.82
KOG0410|consensus	410		98.82
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.81
PRK00098	298	GTPase RsgA; Reviewed	98.8
PRK12289	352	GTPase RsgA; Reviewed	98.77
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.77
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.74
KOG3886|consensus	295		98.72
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.72
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.72
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.69
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.69
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.68
KOG0462|consensus	650		98.68
PRK00007	693	elongation factor G; Reviewed	98.66
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.65
KOG0082|consensus	354		98.64
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.61
PRK09601	364	GTP-binding protein YchF; Reviewed	98.61
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.55
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.53
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.5
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.49
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.48
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.47
KOG1144|consensus	1064		98.45
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.42
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.38
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.38
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.3
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.26
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.23
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.21
KOG1486|consensus	364		98.21
PTZ00416	836	elongation factor 2; Provisional	98.12
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.11
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.11
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.1
PRK13796	365	GTPase YqeH; Provisional	98.07
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.05
PRK01889	356	GTPase RsgA; Reviewed	98.05
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.04
KOG0458|consensus	603		98.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.0
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.99
KOG3887|consensus	347		97.98
KOG0461|consensus	522		97.97
PRK07560	731	elongation factor EF-2; Reviewed	97.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.92
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.9
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.87
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.83
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.8
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.77
KOG0468|consensus	971		97.74
KOG2486|consensus	320		97.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.72
PRK10416	318	signal recognition particle-docking protein FtsY;	97.69
COG1161	322	Predicted GTPases [General function prediction onl	97.68
PRK14974	336	cell division protein FtsY; Provisional	97.66
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.66
KOG1954|consensus	532		97.65
KOG0448|consensus	749		97.61
KOG1491|consensus	391		97.55
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.52
COG1162	301	Predicted GTPases [General function prediction onl	97.45
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.43
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.43
KOG1143|consensus	591		97.41
PRK12288	347	GTPase RsgA; Reviewed	97.4
KOG0099|consensus	379		97.4
KOG4273|consensus	418		97.37
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.35
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.3
PRK12289	352	GTPase RsgA; Reviewed	97.3
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.28
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.26
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.26
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.26
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.25
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.23
KOG0447|consensus	980		97.22
COG3523	1188	IcmF Type VI protein secretion system component Va	97.18
cd03112	158	CobW_like The function of this protein family is u	97.13
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.13
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.11
KOG1547|consensus	336		97.09
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.04
PRK13796	365	GTPase YqeH; Provisional	97.04
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.0
COG1162	301	Predicted GTPases [General function prediction onl	96.99
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.98
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.97
KOG2655|consensus	366		96.96
PRK00098	298	GTPase RsgA; Reviewed	96.95
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.94
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.92
KOG1487|consensus	358		96.91
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.89
TIGR00959	428	ffh signal recognition particle protein. This mode	96.88
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.84
PRK10867	433	signal recognition particle protein; Provisional	96.82
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.75
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.72
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.71
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.63
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.54
cd03114	148	ArgK-like The function of this protein family is u	96.53
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.48
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.47
KOG0466|consensus	466		96.46
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.38
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.37
KOG1424|consensus	562		96.36
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.34
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.32
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.3
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	96.29
KOG0085|consensus	359		96.25
KOG0463|consensus	641		96.24
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.2
KOG2485|consensus	335		96.2
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.13
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.11
PRK08118	167	topology modulation protein; Reviewed	96.11
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.07
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.05
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.02
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.02
PRK07261	171	topology modulation protein; Provisional	95.99
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	95.96
cd03110	179	Fer4_NifH_child This protein family's function is	95.92
cd02036	179	MinD Bacterial cell division requires the formatio	95.91
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.87
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.81
KOG1533|consensus	290		95.8
KOG2484|consensus	435		95.75
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.72
cd03111	106	CpaE_like This protein family consists of proteins	95.59
COG0523	323	Putative GTPases (G3E family) [General function pr	95.56
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.54
COG1161	322	Predicted GTPases [General function prediction onl	95.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.54
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.53
KOG1534|consensus	273		95.48
PRK06217	183	hypothetical protein; Validated	95.46
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.44
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.44
PF00004	132	AAA: ATPase family associated with various cellula	95.42
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.41
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.39
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.37
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.37
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.36
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.32
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.29
PRK01889	356	GTPase RsgA; Reviewed	95.25
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.2
smart00382	148	AAA ATPases associated with a variety of cellular	95.2
COG4639	168	Predicted kinase [General function prediction only	95.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.16
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.15
KOG2423|consensus	572		95.14
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.13
PRK14738	206	gmk guanylate kinase; Provisional	95.12
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.11
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.11
PRK14737	186	gmk guanylate kinase; Provisional	95.07
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	95.07
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.05
KOG0467|consensus	887		94.99
PRK03839	180	putative kinase; Provisional	94.98
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.97
KOG0066|consensus	807		94.94
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	94.92
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.89
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	94.81
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.8
PRK14530	215	adenylate kinase; Provisional	94.79
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.74
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.73
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	94.69
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.68
PRK08233	182	hypothetical protein; Provisional	94.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.68
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.67
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.66
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.64
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.63
PRK13695	174	putative NTPase; Provisional	94.61
PRK05480	209	uridine/cytidine kinase; Provisional	94.61
PRK00300	205	gmk guanylate kinase; Provisional	94.61
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	94.6
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.59
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.58
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.57
PF05729	166	NACHT: NACHT domain	94.57
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	94.56
PRK13949	169	shikimate kinase; Provisional	94.54
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.53
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.52
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.52
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	94.51
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.51
PRK14532	188	adenylate kinase; Provisional	94.5
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.49
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	94.49
PF13173	128	AAA_14: AAA domain	94.48
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.47

>KOG0084|consensus

Probab=100.00  E-value=4.4e-40  Score=258.24  Aligned_cols=158  Identities=20%  Similarity=0.319  Sum_probs=141.9

Q ss_pred             cccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      .+++ +||+|+|++|||||+|+. ||.+  +.|.+.+..|++               +++||||+||+  +.++..||+ 
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~-Rf~~--~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR-   80 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLL-RFKD--DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR-   80 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhh-hhcc--CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc-
Confidence            4444 689999999999999997 8999  777777777765               78999999997  788999999 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EE
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FV  188 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~  188 (250)
                               +|||+|+|||+|+.+||+++..|+.++.++ ...++|.+|||||+|+.+.+.++.++++.|+.+++++ |+
T Consensus        81 ---------~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~  150 (205)
T KOG0084|consen   81 ---------GAHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL  150 (205)
T ss_pred             ---------CCCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence                     999999999999999999999999999876 4567899999999999999999999999999999999 99


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      |+||+++.|+++.|..|+..+..+.......
T Consensus       151 ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~  181 (205)
T KOG0084|consen  151 ETSAKDSTNVEDAFLTLAKELKQRKGLHVKW  181 (205)
T ss_pred             ecccCCccCHHHHHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999988766554433

>KOG0092|consensus

Probab=100.00  E-value=1.8e-38  Score=248.30  Aligned_cols=155  Identities=23%  Similarity=0.349  Sum_probs=141.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|+.|||||||+. ||..  +.|.+...+|++               ++.||||+|||  +++.++||+    
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~-Rfvk--~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR----   76 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVL-RFVK--DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR----   76 (200)
T ss_pred             ceEEEEEECCCCCCchhhhh-hhhh--CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec----
Confidence            45789999999999999997 8999  777777667765               67799999998  799999999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +|+++|+|||+++.+||..++.|++++.+. ..+++-+.|||||+||.+.|.|..+++..+|+..|+.|+|+||
T Consensus        77 ------gA~AAivvYDit~~~SF~~aK~WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA  149 (200)
T KOG0092|consen   77 ------GANAAIVVYDITDEESFEKAKNWVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA  149 (200)
T ss_pred             ------CCcEEEEEEecccHHHHHHHHHHHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence                  999999999999999999999999999765 4477889999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      ++|.||+++|..|++.+.........
T Consensus       150 KTg~Nv~~if~~Ia~~lp~~~~~~~~  175 (200)
T KOG0092|consen  150 KTGENVNEIFQAIAEKLPCSDPQERQ  175 (200)
T ss_pred             ccccCHHHHHHHHHHhccCccccccc
Confidence            99999999999999999887666554

>KOG0094|consensus

Probab=100.00  E-value=5.6e-38  Score=245.65  Aligned_cols=163  Identities=24%  Similarity=0.354  Sum_probs=149.0

Q ss_pred             ccccCCccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cc
Q psy5810          39 CSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RC  101 (250)
Q Consensus        39 ~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~  101 (250)
                      |+.+.......+..|++++|+.+|||||||+ ||+.  +.|..+|.+|++               .+++|||+|||  ++
T Consensus        10 ~~~~~~~~~~~k~~KlVflGdqsVGKTslIt-Rf~y--d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs   86 (221)
T KOG0094|consen   10 CQTMATFGAPLKKYKLVFLGDQSVGKTSLIT-RFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   86 (221)
T ss_pred             HHhccccCccceEEEEEEEccCccchHHHHH-HHHH--hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh
Confidence            4455555667777889999999999999999 8999  888888888887               68899999998  89


Q ss_pred             cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH
Q psy5810         102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY  181 (250)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  181 (250)
                      +.+.|++          +++++|+|||++|..||++..+|++++...++..++-++|||||.||.+.|+++.+++...|+
T Consensus        87 lipsY~R----------ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk  156 (221)
T KOG0094|consen   87 LIPSYIR----------DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK  156 (221)
T ss_pred             hhhhhcc----------CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH
Confidence            9999999          999999999999999999999999999998877789999999999999999999999999999


Q ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         182 AWGVKFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       182 ~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +++..|+|+||+.|+||.++|..++..+.....
T Consensus       157 el~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  157 ELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             HhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            999999999999999999999998888776544

>KOG0078|consensus

Probab=100.00  E-value=5.1e-37  Score=244.18  Aligned_cols=155  Identities=25%  Similarity=0.395  Sum_probs=139.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|++|||||+|+. +|..  +.|..++..+++               .+++|||+||+  +.++..||+    
T Consensus        11 ~~~kvlliGDs~vGKt~~l~-rf~d--~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr----   83 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLL-RFSD--DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR----   83 (207)
T ss_pred             eEEEEEEECCCCCchhHhhh-hhhh--ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh----
Confidence            45789999999999999997 8998  666666666655               67899999998  788899999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +|+++++|||+++..||+++..|++.+.++ ..+++|++|||||+|+...|+|+.+.++++|.++|++|+|+||
T Consensus        84 ------gA~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSA  156 (207)
T KOG0078|consen   84 ------GAMGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSA  156 (207)
T ss_pred             ------hcCeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccc
Confidence                  999999999999999999999999999776 4558999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      ++|.||.+.|..|++.+..+......
T Consensus       157 k~~~NI~eaF~~La~~i~~k~~~~~~  182 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQKLEDAEL  182 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhhcchhhh
Confidence            99999999999999999986555433

>KOG0098|consensus

Probab=100.00  E-value=9.1e-37  Score=237.08  Aligned_cols=155  Identities=22%  Similarity=0.324  Sum_probs=142.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+|++++|+.|||||+|+. ||++  ..|.+.+..|++               +++||||+||+  ++++..||+    
T Consensus         5 ~~fKyIiiGd~gVGKSclll-rf~~--krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr----   77 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLL-RFTD--KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYR----   77 (216)
T ss_pred             ceEEEEEECCCCccHHHHHH-HHhc--cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhc----
Confidence            45789999999999999997 8999  788877777765               78899999998  789999999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +|.+++||||+++++||+.+..|+.++.++ ..+++.++|+|||+||+..|.|+.+|+++||+++|+.|+|+||
T Consensus        78 ------~a~GalLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSa  150 (216)
T KOG0098|consen   78 ------GAAGALLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSA  150 (216)
T ss_pred             ------cCcceEEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhh
Confidence                  999999999999999999999999999776 4689999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      ++++||+|.|......++...+..-.
T Consensus       151 kt~~~VEEaF~nta~~Iy~~~q~g~~  176 (216)
T KOG0098|consen  151 KTAENVEEAFINTAKEIYRKIQDGVF  176 (216)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999987666544

>KOG0080|consensus

Probab=100.00  E-value=1.1e-35  Score=225.64  Aligned_cols=153  Identities=22%  Similarity=0.203  Sum_probs=138.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      -.+||++||++|||||||+- +|..  ..|.+....+++               ++-||||+||+  +.+++.||+    
T Consensus        10 ~t~KiLlIGeSGVGKSSLll-rFv~--~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyR----   82 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLL-RFVS--NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYR----   82 (209)
T ss_pred             eeEEEEEEccCCccHHHHHH-HHHh--cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhc----
Confidence            35789999999999999996 8998  666655555444               66789999998  899999999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +|.++|+|||++.+++|..+..|+.++..+...+++..++||||+|.+++|.|+.+++.+||+++++.|+|+||
T Consensus        83 ------gaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SA  156 (209)
T KOG0080|consen   83 ------GAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSA  156 (209)
T ss_pred             ------cCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcch
Confidence                  99999999999999999999999999998888888999999999999888999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++.+|++..|++|+.+|.+.+.-
T Consensus       157 kt~~~V~~~FeelveKIi~tp~l  179 (209)
T KOG0080|consen  157 KTRENVQCCFEELVEKIIETPSL  179 (209)
T ss_pred             hhhccHHHHHHHHHHHHhcCcch
Confidence            99999999999999999876544

>KOG0394|consensus

Probab=100.00  E-value=2e-34  Score=223.66  Aligned_cols=155  Identities=23%  Similarity=0.305  Sum_probs=137.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      .-..+||+++|++|||||||++ +|++  ..|...|..+++               .++||||+||+  +++.-.+|+  
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn-~yv~--~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR--   80 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMN-QYVN--KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR--   80 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHH-HHHH--HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec--
Confidence            4566899999999999999999 8998  777777776665               67899999998  788999999  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC---CCcEEEEeeCCCccC--CCccCHHHHHHHHHHhC-
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG---EKAVILVANKADLER--RRQVTHSDGKKLAYAWG-  184 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~-  184 (250)
                              +||++++|||++++.||+.+..|.+++..+....   .-|+||+|||+|+++  .|+|+...++.||...| 
T Consensus        81 --------gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn  152 (210)
T KOG0394|consen   81 --------GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN  152 (210)
T ss_pred             --------CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence                    9999999999999999999999999998775533   479999999999965  38999999999998875 


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      +||+|+|||++.||.+.|..+++.++.....
T Consensus       153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  153 IPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            8999999999999999999999988876543

>KOG0079|consensus

Probab=100.00  E-value=3.5e-35  Score=220.08  Aligned_cols=150  Identities=21%  Similarity=0.313  Sum_probs=135.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +|.+|||++|||||+|+. +|.+  +.|...|..+++               +++||||+|||  +.++..||+      
T Consensus         9 fkllIigDsgVGKssLl~-rF~d--dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyr------   79 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLL-RFAD--DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYR------   79 (198)
T ss_pred             HHHHeecCCcccHHHHHH-HHhh--cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHcc------
Confidence            569999999999999996 8988  677777776665               78899999998  788899999      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          +.+++++|||++|.+||.++..|++++...  .+.+|-+|||||+|+++.+.|..++++.||...|+.++|+||+.
T Consensus        80 ----gthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe  153 (198)
T KOG0079|consen   80 ----GTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE  153 (198)
T ss_pred             ----CCceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence                999999999999999999999999999654  46899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      +.|+++.|.-|.++..+.....
T Consensus       154 ~~NvE~mF~cit~qvl~~k~r~  175 (198)
T KOG0079|consen  154 NENVEAMFHCITKQVLQAKLRE  175 (198)
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            9999999999999888766333

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.6e-34  Score=230.99  Aligned_cols=151  Identities=18%  Similarity=0.190  Sum_probs=129.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|+.|||||||+. +|.+  ..|.+.+.++++               .+++|||+|++  ..+++.+++    
T Consensus         5 ~~~KivviG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~----   77 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILA-SLQD--GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSR----   77 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc----
Confidence            35889999999999999997 8887  444443333221               56789999987  566777888    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||+++++||+++..|+.++.+.  .+++|++|||||.|+.+.+.++.++++.+++.++++|+||||
T Consensus        78 ------~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SA  149 (189)
T cd04121          78 ------GAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSP  149 (189)
T ss_pred             ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecC
Confidence                  999999999999999999999999999664  368999999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++|.||+++|.++++.+...+..
T Consensus       150 k~g~~V~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         150 LCNFNITESFTELARIVLMRHGR  172 (189)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999888755443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0091|consensus

Probab=100.00  E-value=7.6e-34  Score=216.25  Aligned_cols=152  Identities=25%  Similarity=0.307  Sum_probs=136.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+++++||++-||||||+. +|..  +.|..--+|+++                ++++|||+||+  ++++..||+    
T Consensus         8 qfrlivigdstvgkssll~-~ft~--gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyr----   80 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLR-YFTE--GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR----   80 (213)
T ss_pred             EEEEEEEcCCcccHHHHHH-HHhc--CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh----
Confidence            3569999999999999996 8888  666665566665                88999999998  899999999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                            ++-++++|||++|++||+.+..|+++...+...+ .+.+.|||+|+||...|+|+.++++.+++.+|+.|+|+|
T Consensus        81 ------nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETS  154 (213)
T KOG0091|consen   81 ------NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETS  154 (213)
T ss_pred             ------cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEec
Confidence                  9999999999999999999999999987665534 455899999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      |++|.|+++.|..|++.+.....+
T Consensus       155 ak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999877665

>KOG0087|consensus

Probab=100.00  E-value=2.5e-33  Score=222.29  Aligned_cols=158  Identities=24%  Similarity=0.283  Sum_probs=138.9

Q ss_pred             ccccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccc
Q psy5810          47 QTYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFC  108 (250)
Q Consensus        47 ~~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~  108 (250)
                      ..|++ +||++||++|||||-|+. ||..  +.|...--+|++               +.+||||+|||  +.++..||+
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLls-Rftr--nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLS-RFTR--NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHH-Hhcc--cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence            46655 569999999999999997 8888  566544444443               67899999998  788999999


Q ss_pred             cccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEE
Q psy5810         109 SQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       109 ~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  188 (250)
                                +|.++++|||+++..+|+++..|+.++..+ .+++++++|||||+||...|.|..+++..+++..++.++
T Consensus        86 ----------gAvGAllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~  154 (222)
T KOG0087|consen   86 ----------GAVGALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL  154 (222)
T ss_pred             ----------ccceeEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence                      999999999999999999999999999765 567999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      |+||+++.|+++.|..++..|.........
T Consensus       155 EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~  184 (222)
T KOG0087|consen  155 ETSALDATNVEKAFERVLTEIYKIVSKKQL  184 (222)
T ss_pred             EecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998876555443

>KOG0093|consensus

Probab=100.00  E-value=1.4e-33  Score=211.26  Aligned_cols=152  Identities=19%  Similarity=0.300  Sum_probs=133.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      .|++|+|++.||||||+. ++++.  +..|..|.|..+.           ++++|||+|||  +.++..||+        
T Consensus        22 fKlliiGnssvGKTSfl~-ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR--------   92 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLF-RYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR--------   92 (193)
T ss_pred             eeEEEEccCCccchhhhH-HhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh--------
Confidence            479999999999999995 89983  2334455554443           78899999998  678888999        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                        +|+++|++||++|.+||+.++.|.-.|.-+ .-.++|+|+||||||++++|.++.+.++.+++++|+.|+|+||+.+.
T Consensus        93 --gamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni  169 (193)
T KOG0093|consen   93 --GAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI  169 (193)
T ss_pred             --ccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence              999999999999999999999999998554 44689999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy5810         197 KTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~  215 (250)
                      |++++|+.++..|.++...
T Consensus       170 nVk~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  170 NVKQVFERLVDIICDKMSE  188 (193)
T ss_pred             cHHHHHHHHHHHHHHHhhh
Confidence            9999999999888765443

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.7e-33  Score=222.68  Aligned_cols=145  Identities=21%  Similarity=0.376  Sum_probs=125.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||+. +|..  +.|...+.++++              ++++|||+|++  +.+.+.+++       
T Consensus         2 ~kivv~G~~~vGKTsli~-~~~~--~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~-------   71 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLI-CYTS--NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYR-------   71 (176)
T ss_pred             eEEEEECCCCCcHHHHHH-HHhc--CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcC-------
Confidence            689999999999999997 8888  566665666653              56799999987  567788888       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCCC----------ccCHHHHHHHHHHhC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERRR----------QVTHSDGKKLAYAWG  184 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~  184 (250)
                         ++|++|+|||+++++||+++ ..|+.++.+..  +++|++|||||+|+.+.+          .++.+++.++++.++
T Consensus        72 ---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  146 (176)
T cd04133          72 ---GADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG  146 (176)
T ss_pred             ---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence               99999999999999999998 68999996653  579999999999996543          589999999999999


Q ss_pred             C-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 V-KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      + +|+||||++|.||+++|+.+++.+.+
T Consensus       147 ~~~~~E~SAk~~~nV~~~F~~~~~~~~~  174 (176)
T cd04133         147 AAAYIECSSKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence            8 59999999999999999999987643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.9e-33  Score=223.40  Aligned_cols=146  Identities=18%  Similarity=0.289  Sum_probs=125.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||+. +|..  ..|.+.+.|+++              .+++|||+|++  ..+++.+|+     
T Consensus         4 ~~~KivvvGd~~vGKTsli~-~~~~--~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~-----   75 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP-----   75 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHH-HHHh--CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcC-----
Confidence            35679999999999999997 8888  566666665554              57789999986  567788888     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHH
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLA  180 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~  180 (250)
                           ++|++|+|||++++.||+++ ..|+.++.+..  ++.|++|||||+|+.+            .+.++.+++.++|
T Consensus        76 -----~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a  148 (182)
T cd04172          76 -----DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA  148 (182)
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence                 99999999999999999997 79999997653  6799999999999853            3569999999999


Q ss_pred             HHhCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy5810         181 YAWGV-KFVETSVGLVYK-TDELLVGIARQAG  210 (250)
Q Consensus       181 ~~~~~-~~~evSa~~~~~-I~~lf~~l~~~i~  210 (250)
                      +.+++ +|+||||++|.| |+++|..+++.++
T Consensus       149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         149 KQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            99996 899999999998 9999999998644

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=9.9e-33  Score=229.11  Aligned_cols=187  Identities=28%  Similarity=0.433  Sum_probs=142.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc-ccccCce---------------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDV---------------FFIVYSDTNHTQRCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~---------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|..+  .+. ..+.++.               ..+.+|||+|++..+...++.       
T Consensus         1 ~KI~lvG~~gvGKTsLi~-~~~~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------   70 (221)
T cd04148           1 YRVVMLGSPGVGKSSLAS-QFTSG--EYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQ-------   70 (221)
T ss_pred             CEEEEECCCCCcHHHHHH-HHhcC--CcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhh-------
Confidence            379999999999999998 78652  322 2222221               157789999998322222221       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                        +++|++++|||++++.||+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++.+++..++++|+|+||+++
T Consensus        71 --~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~  148 (221)
T cd04148          71 --YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQ  148 (221)
T ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence              058999999999999999999999999877654568999999999999877888888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccC------CcCcCcccccccC
Q psy5810         196 YKTDELLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFK------WFSKVSCENLLVL  250 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  250 (250)
                      .||+++|+++++.+..........            ....++++.++.++..++      +.+++||+||+||
T Consensus       149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (221)
T cd04148         149 HNVDELLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVAKNNKGMAFKSKSKSCHDLSVL  221 (221)
T ss_pred             CCHHHHHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhccccchhhhhhccCCccccccC
Confidence            999999999999886433221111            111157777888887763      3578999999998

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-32  Score=225.61  Aligned_cols=146  Identities=20%  Similarity=0.327  Sum_probs=126.6

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .|+++|+.|||||||+. +|..  +.|...+.++++               .+++|||+|++  +.++..|++       
T Consensus         2 ~vvvlG~~gVGKTSli~-r~~~--~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~-------   71 (202)
T cd04120           2 QVIIIGSRGVGKTSLMR-RFTD--DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR-------   71 (202)
T ss_pred             EEEEECcCCCCHHHHHH-HHHh--CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhc-------
Confidence            59999999999999997 8887  556555544442               56789999997  567888888       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~~  194 (250)
                         ++|++|+|||+++++||+++..|+..+.+. ...++|++|||||+|+...+.++.+++.++++.. ++.|+||||++
T Consensus        72 ---~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt  147 (202)
T cd04120          72 ---SAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD  147 (202)
T ss_pred             ---CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence               999999999999999999999999987654 3467999999999999878899999999999885 78999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.||+++|.++++.+...
T Consensus       148 g~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         148 NFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999887654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=9.4e-33  Score=229.91  Aligned_cols=152  Identities=15%  Similarity=0.241  Sum_probs=129.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+++|++|||||||+. +|..  ..|..++.++++              .+++|||+|++  +.+++.+|+    
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~-r~~~--~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~----   83 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQ-VLAK--DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS----   83 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHH-HHhc--CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC----
Confidence            356789999999999999997 8888  566666666653              57799999987  567788888    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~  179 (250)
                            +||++|+|||+++++||+.+ ..|+.++.+..  ++.|++|||||+|+.+            .+.|+.++++++
T Consensus        84 ------~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~  155 (232)
T cd04174          84 ------DSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL  155 (232)
T ss_pred             ------CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence                  99999999999999999985 79999997643  5789999999999964            367999999999


Q ss_pred             HHHhCC-eEEEEecCCCC-CHHHHHHHHHHHHHhhhhh
Q psy5810         180 AYAWGV-KFVETSVGLVY-KTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       180 ~~~~~~-~~~evSa~~~~-~I~~lf~~l~~~i~~~~~~  215 (250)
                      |+.+++ .|+||||++|. ||+++|..++..+.+....
T Consensus       156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence            999998 69999999998 8999999999988765333

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.6e-32  Score=219.42  Aligned_cols=149  Identities=26%  Similarity=0.382  Sum_probs=127.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|..  ..|...+.++++              .+.+|||+|++  ..+++.+++      
T Consensus         2 ~~ki~vvG~~~vGKTsL~~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~------   72 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTM-QFIS--HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMR------   72 (172)
T ss_pred             ceEEEEECCCCCcHHHHHH-HHHh--CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhh------
Confidence            3679999999999999997 7887  455444433332              56789999986  567777787      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.||+.+..|...+.+.....++|+++||||+|+.+.+.++.+++.++++.++++|+||||++
T Consensus        73 ----~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~  148 (172)
T cd04141          73 ----CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAAL  148 (172)
T ss_pred             ----cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCC
Confidence                8999999999999999999999988887655556899999999999987788999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.||+++|++|++.+.+.
T Consensus       149 ~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         149 RHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999887754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0088|consensus

Probab=100.00  E-value=2.5e-33  Score=212.45  Aligned_cols=154  Identities=19%  Similarity=0.257  Sum_probs=134.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      ..-.+|++++|..-||||||+- ||+.  ..|....-.++               ..+.||||+||+  ..+.|.||+  
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVL-Ry~E--nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR--   84 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVL-RYVE--NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR--   84 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHH-HHHH--hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe--
Confidence            3344889999999999999997 8888  55543222221               267899999998  789999999  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                              +++++++|||++|++||+.+++|..++.+. ....+.+++||||+||+++|.|+.++++.+++..|..|+|+
T Consensus        85 --------gSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT  155 (218)
T KOG0088|consen   85 --------GSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET  155 (218)
T ss_pred             --------CCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence                    999999999999999999999999999776 45778899999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ||+.+.||.++|..|...+++....
T Consensus       156 SAk~N~Gi~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  156 SAKDNVGISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988776533

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.3e-32  Score=219.72  Aligned_cols=144  Identities=19%  Similarity=0.276  Sum_probs=124.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|..  ..|..++.++++              .+.+|||+|++  ..+.+.+++       
T Consensus         2 ~Kiv~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~-------   71 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQ-VFAK--DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYP-------   71 (178)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcC-------
Confidence            689999999999999997 8888  556666655543              56789999986  567788888       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~  182 (250)
                         ++|++|+|||+++++||+++ ..|+.++.+..  +++|++|||||+|+.+            .+.++.+++.+++++
T Consensus        72 ---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~  146 (178)
T cd04131          72 ---DSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ  146 (178)
T ss_pred             ---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH
Confidence               99999999999999999996 78999997653  6899999999999953            346999999999999


Q ss_pred             hCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy5810         183 WGV-KFVETSVGLVYK-TDELLVGIARQAG  210 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~-I~~lf~~l~~~i~  210 (250)
                      +++ +|+||||++|+| |+++|..+++..+
T Consensus       147 ~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         147 LGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             hCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            997 799999999995 9999999998544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081|consensus

Probab=100.00  E-value=9e-34  Score=214.95  Aligned_cols=157  Identities=20%  Similarity=0.302  Sum_probs=140.3

Q ss_pred             cccE-EEEEEEcCCCCchhhhchhhhccc--cccccccccCcee--------------------EEEEEeCCCCc--ccc
Q psy5810          48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF--------------------FIVYSDTNHTQ--RCL  102 (250)
Q Consensus        48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~--------------------~i~i~Dt~g~~--~~~  102 (250)
                      .|++ +|++.+|++||||||+++ +|.++  ..+|.+|+|.++.                    .+++|||+||+  +++
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly-~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLY-QYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEE-EecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            3444 579999999999999998 89885  4456667666653                    67899999998  789


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      +..+|+          +|-+++++||+++..||-++++|+.++..+....+..+|++|||+||++.|+|+.+++.++|.+
T Consensus        84 TTAFfR----------DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k  153 (219)
T KOG0081|consen   84 TTAFFR----------DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK  153 (219)
T ss_pred             HHHHHH----------hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence            999999          9999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      +|+||+|+||.+|.||++..+.|+..+.+....
T Consensus       154 yglPYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  154 YGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             hCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888776554

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.4e-32  Score=219.84  Aligned_cols=146  Identities=21%  Similarity=0.322  Sum_probs=124.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||+. +|..  +.|...+.++++              .+.+|||+|++  +.+++.+++      
T Consensus         3 ~~ki~~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~------   73 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLI-CYTT--NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYP------   73 (191)
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHh--CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcc------
Confidence            3689999999999999997 8887  555555555553              46789999997  677888888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHH
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAY  181 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~  181 (250)
                          ++|++|+|||++++.||+.+. .|+.++.+.  .+++|++|||||+|+.+.            +.++.+++.++++
T Consensus        74 ----~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~  147 (191)
T cd01875          74 ----QTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK  147 (191)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence                999999999999999999997 698888653  358999999999999653            3478889999999


Q ss_pred             HhC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         182 AWG-VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       182 ~~~-~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      .++ ++|+|+||++|.||+++|.++++.+..
T Consensus       148 ~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         148 QIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            998 589999999999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0086|consensus

Probab=100.00  E-value=1.2e-32  Score=207.60  Aligned_cols=160  Identities=23%  Similarity=0.262  Sum_probs=139.9

Q ss_pred             cccccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcc
Q psy5810          46 VQTYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPF  107 (250)
Q Consensus        46 ~~~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~  107 (250)
                      ..+|++ +|++++|+.|.|||+|++ +|+.  .+|.+....+++               +++||||+||+  ++.+..||
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh-~Fie--~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYY   79 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLH-QFIE--NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYY   79 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHH-HHHH--hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHh
Confidence            456766 579999999999999997 8888  455444333333               78999999998  78889999


Q ss_pred             ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeE
Q psy5810         108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKF  187 (250)
Q Consensus       108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  187 (250)
                      +          +|-++++|||+++++||+.+.+|+.++... ..+++-++|+|||.||.++|+|+..++..||++..+.+
T Consensus        80 R----------GAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f  148 (214)
T KOG0086|consen   80 R----------GAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF  148 (214)
T ss_pred             c----------cccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence            9          999999999999999999999999998654 56788999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      .|+||++|+|++|.|-..++.|+.+.......
T Consensus       149 lETSa~TGeNVEEaFl~c~~tIl~kIE~GElD  180 (214)
T KOG0086|consen  149 LETSALTGENVEEAFLKCARTILNKIESGELD  180 (214)
T ss_pred             eeecccccccHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999998877665443

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.1e-31  Score=218.59  Aligned_cols=146  Identities=18%  Similarity=0.245  Sum_probs=119.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc---cccccccccCce------------------------eEEEEEeCCCCccccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ---VENFVQTYHPDV------------------------FFIVYSDTNHTQRCLT  103 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~---~~~~~~~~~~~~------------------------~~i~i~Dt~g~~~~~~  103 (250)
                      .+||+++|++|||||||+.+++.+.   ...|.+.+.|++                        ..+.+|||+|+++.+.
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~   81 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDR   81 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhh
Confidence            3689999999999999996455542   112222222222                        2567999999987677


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC---------------
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER---------------  167 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~---------------  167 (250)
                      ..+|+          ++|++|+|||++++.||+.+. .|+.++.+.  .+++|++|||||+|+..               
T Consensus        82 ~~~~~----------~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~  149 (195)
T cd01873          82 RFAYG----------RSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLAR  149 (195)
T ss_pred             cccCC----------CCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhccccccc
Confidence            77888          999999999999999999997 599988654  25789999999999853               


Q ss_pred             ----CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         168 ----RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       168 ----~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                          .+.|+.++++++|++++++|+||||++|.||+++|..+++.
T Consensus       150 ~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         150 PIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                47899999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.98  E-value=1.2e-31  Score=219.48  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=128.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +||+++|++|||||||++ +|.+  ..+...+.++++                .+.+|||+|++  +.++..+++     
T Consensus         1 ~KivivG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-----   72 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIK-RYVH--GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYR-----   72 (201)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhC-----
Confidence            479999999999999998 8887  344333333321                46789999986  556677777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVE  189 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e  189 (250)
                           ++|++|+|||+++++||+.+..|+.++....   ...++|++|||||+|+.+.+.++.+++.++++..+ ..|++
T Consensus        73 -----~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  147 (201)
T cd04107          73 -----GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE  147 (201)
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence                 8999999999999999999999999886432   23678999999999997667888999999999998 68999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      +||++|.||+++|++|++.+.+.......+
T Consensus       148 ~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         148 TSAKEGINIEEAMRFLVKNILANDKNLQQA  177 (201)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhchhhHhh
Confidence            999999999999999999988765544444

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.98  E-value=8.4e-32  Score=218.46  Aligned_cols=151  Identities=24%  Similarity=0.393  Sum_probs=126.9

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      ||+++|++|||||||++ +|+.  +.|...+.++++              .+++|||+|++  ..++..+++        
T Consensus         1 ki~ivG~~~vGKTsli~-~l~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--------   69 (190)
T cd04144           1 KLVVLGDGGVGKTALTI-QLCL--NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIR--------   69 (190)
T ss_pred             CEEEECCCCCCHHHHHH-HHHh--CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHH--------
Confidence            58999999999999998 8887  455554444432              47789999986  455666777        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                        ++|++|+|||+++++||+.+..|+..+.....  ..++|+++||||+|+...+.++..++.++++.++++|+++||++
T Consensus        70 --~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~  147 (190)
T cd04144          70 --EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKT  147 (190)
T ss_pred             --hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCC
Confidence              89999999999999999999999998876543  35789999999999977788888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      |.|++++|.++++.+...+...
T Consensus       148 ~~~v~~l~~~l~~~l~~~~~~~  169 (190)
T cd04144         148 NVNVERAFYTLVRALRQQRQGG  169 (190)
T ss_pred             CCCHHHHHHHHHHHHHHhhccc
Confidence            9999999999998887555544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.98  E-value=2.4e-31  Score=220.07  Aligned_cols=152  Identities=22%  Similarity=0.204  Sum_probs=124.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc---ccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +||+|+|++|||||||++ +|..  ..|.   ++++..+.       .+.+|||+|++  +.++..+++          +
T Consensus         1 ~KIvivG~~~vGKTSLi~-r~~~--~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~----------~   67 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLH-RYME--RRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCR----------G   67 (220)
T ss_pred             CEEEEECCCCCcHHHHHH-HHhc--CCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhc----------c
Confidence            479999999999999998 7887  3443   33333222       57789999986  456666777          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-------------------CCccCHHHHHHHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-------------------RRQVTHSDGKKLA  180 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------------~~~v~~~~~~~~~  180 (250)
                      +|++|+|||+++++||+++..|+..+.+. ...++|++|||||+|+.+                   .+.++.+++.+++
T Consensus        68 ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a  146 (220)
T cd04126          68 AAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY  146 (220)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence            99999999999999999999988887654 346789999999999965                   6889999999999


Q ss_pred             HHhC--------------CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         181 YAWG--------------VKFVETSVGLVYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       181 ~~~~--------------~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      ++.+              ++|+||||++|.||+++|..+++.+........
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~  197 (220)
T cd04126         147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR  197 (220)
T ss_pred             HHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            9876              689999999999999999999998875444333

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04122 Rab14 Rab14 subfamily

Probab=99.98  E-value=2.7e-31  Score=210.56  Aligned_cols=147  Identities=22%  Similarity=0.300  Sum_probs=125.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|..  ..|.+.+.++++               .+.+|||+|++  ..++..+++     
T Consensus         2 ~~ki~iiG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-----   73 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLH-QFTE--KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYR-----   73 (166)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-----
Confidence            3789999999999999998 8887  455544443321               56799999986  455666777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++|+|||+++++||+.+..|+..+... ..++.|+++||||+|+.+.+.++.+++.++++..+++|+|+||+
T Consensus        74 -----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  147 (166)
T cd04122          74 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAK  147 (166)
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECC
Confidence                 899999999999999999999999988654 34678999999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||.++|.+++..+.+
T Consensus       148 ~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         148 TGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=99.98  E-value=3.2e-31  Score=214.89  Aligned_cols=153  Identities=25%  Similarity=0.392  Sum_probs=128.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|.+  ..|...+.++.+              .+.+|||+|++  ..++..+++      
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~------   75 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTI-QFIQ--NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMR------   75 (189)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhc--CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhh------
Confidence            3679999999999999998 8887  444444433321              46789999986  556667777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.++.+++..+++.++++|+++||++
T Consensus        76 ----~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~  151 (189)
T PTZ00369         76 ----TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQ  151 (189)
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCC
Confidence                8999999999999999999999999987665556899999999999977778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      |.||.++|.++++.+.+..+..
T Consensus       152 ~~gi~~~~~~l~~~l~~~~~~~  173 (189)
T PTZ00369        152 RVNVDEAFYELVREIRKYLKED  173 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999887654433

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.98  E-value=1.4e-31  Score=221.68  Aligned_cols=149  Identities=20%  Similarity=0.301  Sum_probs=124.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+|+|++|||||||+. +|..  ..|...|.|++.              .+.+|||+|++  ..+++.+|+       
T Consensus         2 ~KIvvvGd~~vGKTsLi~-~~~~--~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~-------   71 (222)
T cd04173           2 CKIVVVGDAECGKTALLQ-VFAK--DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYP-------   71 (222)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHc--CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhcc-------
Confidence            689999999999999997 8887  555555555543              56789999986  667788888       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~  182 (250)
                         ++|++|+|||+++++||+.+ ..|..++..  ..+++|++|||||+|+...            ..++.+++..+++.
T Consensus        72 ---~~d~illvfdis~~~Sf~~i~~~w~~~~~~--~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~  146 (222)
T cd04173          72 ---DSDAVLICFDISRPETLDSVLKKWQGETQE--FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ  146 (222)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence               99999999999999999999 468877644  3468999999999998542            24888999999999


Q ss_pred             hCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhhhh
Q psy5810         183 WGV-KFVETSVGLVYK-TDELLVGIARQAGLNKKR  215 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~-I~~lf~~l~~~i~~~~~~  215 (250)
                      .++ +|+||||+++.+ |+++|..++.....+...
T Consensus       147 ~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         147 VGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             cCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence            996 899999999985 999999999987765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=4.9e-31  Score=211.36  Aligned_cols=143  Identities=24%  Similarity=0.388  Sum_probs=121.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|..  +.|.+.+.|+++              .+.+|||+|++  ..++..+++       
T Consensus         2 ~ki~vvG~~~vGKTsl~~-~~~~--~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLI-SYTT--NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP-------   71 (175)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcc-------
Confidence            689999999999999998 8887  556555555553              46689999987  456777888       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~  182 (250)
                         ++|++|+|||+++++||+.+. .|+.++.+.  .+++|++|||||+|+.+.            +.++.+++.+++++
T Consensus        72 ---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~  146 (175)
T cd01874          72 ---QTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARD  146 (175)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHH
Confidence               899999999999999999997 599888654  357999999999998543            67889999999998


Q ss_pred             hC-CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         183 WG-VKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       183 ~~-~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      .+ +.|+|+||++|.|++++|+.+++.+
T Consensus       147 ~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         147 LKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            87 6899999999999999999999754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=5.2e-31  Score=211.38  Aligned_cols=149  Identities=21%  Similarity=0.340  Sum_probs=126.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce-------------------------eEEEEEeCCCCc--ccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------------------FFIVYSDTNHTQ--RCL  102 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------------------~~i~i~Dt~g~~--~~~  102 (250)
                      ..+||+++|++|||||||++ +|.++  .|.+.+.+++                         ..+.+|||+|++  ..+
T Consensus         3 ~~~ki~ivG~~~vGKTsli~-~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   79 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLY-QYTDN--KFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL   79 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHH-HHhcC--CCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH
Confidence            34899999999999999998 78773  3333222221                         246799999987  456


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      +..+++          ++|++++|||+++++||+++..|+.++.......+.|+++||||+|+.+.+.++.+++.++++.
T Consensus        80 ~~~~~~----------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~  149 (180)
T cd04127          80 TTAFFR----------DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK  149 (180)
T ss_pred             HHHHhC----------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence            677777          8999999999999999999999999997665556889999999999987788899999999999


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++++++++||++|.|++++|++|++.+.+
T Consensus       150 ~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         150 YGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=4.8e-31  Score=215.62  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=127.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ..+.++.+..+.           .+.+|||+|++  ..++..+++      
T Consensus         5 ~~~kivvvG~~~vGKTsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------   77 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLL-RFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYR------   77 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHH-HHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhC------
Confidence            35789999999999999998 887731  122334332221           56799999986  456666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          +++++++|||+++++||+.+..|+..+...  ....|++|||||+|+.+.+.++.+++..+++.++++|+++||++
T Consensus        78 ----~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  151 (199)
T cd04110          78 ----GTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKE  151 (199)
T ss_pred             ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence                899999999999999999999999998653  36789999999999987778888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      |.||.++|+++++.+........
T Consensus       152 ~~gi~~lf~~l~~~~~~~~~~~~  174 (199)
T cd04110         152 NINVEEMFNCITELVLRAKKDNL  174 (199)
T ss_pred             CcCHHHHHHHHHHHHHHhhhccC
Confidence            99999999999998876544443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=5.7e-31  Score=217.09  Aligned_cols=153  Identities=25%  Similarity=0.344  Sum_probs=128.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+||+|+|++|||||||++ +|.+  ..+...+.+++                ..+++|||+|++  ..++..+++    
T Consensus         2 ~~KIvvvG~~~vGKTsLi~-~l~~--~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----   74 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLK-RFTE--GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYR----   74 (211)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhc----
Confidence            4789999999999999998 7887  33333333322                257799999987  455566777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||+++++||+++..|+.++.+......+|++|||||+|+.+.+.++.+++.++++.++++|+|+||
T Consensus        75 ------~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  148 (211)
T cd04111          75 ------NSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA  148 (211)
T ss_pred             ------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence                  89999999999999999999999999977655556889999999999877889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      ++|.||+++|++|++.+.+.....
T Consensus       149 k~g~~v~e~f~~l~~~~~~~~~~~  172 (211)
T cd04111         149 RTGDNVEEAFELLTQEIYERIKRG  172 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999887664443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=5.7e-31  Score=207.36  Aligned_cols=145  Identities=28%  Similarity=0.453  Sum_probs=123.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ ++..  +.|..++.+++.              .+.+|||+|++  ..++..+++       
T Consensus         2 ~ki~i~G~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (163)
T cd04136           2 YKVVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIK-------   71 (163)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhh-------
Confidence            579999999999999998 7887  445444444432              46789999986  456667777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.++.+++..+++.++.+++++||++|
T Consensus        72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (163)
T cd04136          72 ---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK  148 (163)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence               89999999999999999999999999977655568999999999999777778888888899988999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQA  209 (250)
Q Consensus       196 ~~I~~lf~~l~~~i  209 (250)
                      .|+.++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~~  162 (163)
T cd04136         149 INVDEVFADLVRQI  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=5.9e-31  Score=207.96  Aligned_cols=146  Identities=29%  Similarity=0.460  Sum_probs=125.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +++.  +.+.+.+.+++.              .+.+|||+|++  ..++..+++       
T Consensus         2 ~ki~~~G~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (164)
T cd04175           2 YKLVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMK-------   71 (164)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHh-------
Confidence            579999999999999998 7876  444444444432              46689999986  566777777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++++.+|+.+.+|+..+.......+.|+++||||+|+.+.+.++.+++.++++.++++|+++||++|
T Consensus        72 ---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (164)
T cd04175          72 ---NGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK  148 (164)
T ss_pred             ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence               89999999999999999999999999977655678999999999999877788888888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999997653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.2e-30  Score=215.70  Aligned_cols=148  Identities=20%  Similarity=0.212  Sum_probs=125.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +||+++|++|||||||++ +|.+  ..|...+.++++                .+.+|||+|++  ..++..+++     
T Consensus         1 ~Ki~ivG~~~vGKSsLi~-~l~~--~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~-----   72 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCR-RFAK--EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIY-----   72 (215)
T ss_pred             CEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhh-----
Confidence            479999999999999998 8887  444444444432                56789999986  566677777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                           ++|++|+|||+++++||+.+..|+..+.+...  ..++|+++||||+|+.+.+.++.+++.++++.++++++++|
T Consensus        73 -----~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS  147 (215)
T cd04109          73 -----GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS  147 (215)
T ss_pred             -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence                 89999999999999999999999999976543  24578999999999987788999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |++|.||+++|+++++.+...
T Consensus       148 Aktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         148 AKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=1.1e-30  Score=206.37  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=122.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|.+  ..|.+++.++++               .+++|||+|++  ..++..+++      
T Consensus         1 ~ki~vvG~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------   71 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLC-RFTD--NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYR------   71 (161)
T ss_pred             CEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhc------
Confidence            379999999999999998 7887  555555555443               46789999986  455666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||+++++||+.+..|+.++.+. ...++|+++||||.|+.+.+.++.+++..+++.++++|+|+||++
T Consensus        72 ----~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  146 (161)
T cd04117          72 ----RAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACT  146 (161)
T ss_pred             ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                899999999999999999999999998654 345799999999999988788999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQ  208 (250)
Q Consensus       195 ~~~I~~lf~~l~~~  208 (250)
                      |.|++++|.+|++.
T Consensus       147 ~~~v~~~f~~l~~~  160 (161)
T cd04117         147 NSNIKESFTRLTEL  160 (161)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0083|consensus

Probab=99.97  E-value=4.6e-32  Score=200.16  Aligned_cols=149  Identities=26%  Similarity=0.403  Sum_probs=133.1

Q ss_pred             EEEcCCCCchhhhchhhhccc---cccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          55 IVHSDTNHTQRCLTSMPFCSQ---VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        55 ~iiG~~~vGKSsLi~~~~~~~---~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      +++|++++|||+|+- ||-++   ...|.+++|.++.           ++++|||+||+  ++.+..||+          
T Consensus         1 mllgds~~gktclli-r~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyr----------   69 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLI-RFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYR----------   69 (192)
T ss_pred             CccccCccCceEEEE-EeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhc----------
Confidence            478999999999997 76654   4678888887765           78999999998  788999999          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      +||+++++||++|..||++++.|+.+|.++ ....+.+.++|||+|+..+|.|..++++++++.+++||+|+||++|.|+
T Consensus        70 da~allllydiankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nv  148 (192)
T KOG0083|consen   70 DADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNV  148 (192)
T ss_pred             ccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccH
Confidence            999999999999999999999999999776 3456889999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy5810         199 DELLVGIARQAGLNKKR  215 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~~~  215 (250)
                      +-.|..+++.+.+....
T Consensus       149 d~af~~ia~~l~k~~~~  165 (192)
T KOG0083|consen  149 DLAFLAIAEELKKLKMG  165 (192)
T ss_pred             hHHHHHHHHHHHHhccC
Confidence            99999999988765433

>KOG0095|consensus

Probab=99.97  E-value=2.2e-31  Score=200.09  Aligned_cols=156  Identities=21%  Similarity=0.290  Sum_probs=137.7

Q ss_pred             cccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      .|+. +||+++|+.|||||+|+ |+|..  +-|.+..+.+++               +++||||+||+  ++++..||+ 
T Consensus         3 dykflfkivlvgnagvgktclv-rrftq--glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyr-   78 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLV-RRFTQ--GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYR-   78 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhh-hhhhc--cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhh-
Confidence            4555 57999999999999999 58988  777777777765               78899999998  789999999 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                               .|+++|+|||++...||+-+.+|+.+|.++. ...+-.||||||.|+.+.|+++..-+++|++....-|+|
T Consensus        79 ---------sahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfle  148 (213)
T KOG0095|consen   79 ---------SAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLE  148 (213)
T ss_pred             ---------hcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhh
Confidence                     8999999999999999999999999998773 456778999999999988999999999999998888999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      +||+...|++.+|..++..+........
T Consensus       149 tsakea~nve~lf~~~a~rli~~ar~~d  176 (213)
T KOG0095|consen  149 TSAKEADNVEKLFLDLACRLISEARQND  176 (213)
T ss_pred             hcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988876554443

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=1.4e-30  Score=205.38  Aligned_cols=141  Identities=14%  Similarity=0.255  Sum_probs=116.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~  118 (250)
                      +||+++|++|||||||+. +|..  ..|.+.+.++.             ..+.+|||+|++.   ..+++          
T Consensus         1 ~ki~vvG~~gvGKTsli~-~~~~--~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---~~~~~----------   64 (158)
T cd04103           1 LKLGIVGNLQSGKSALVH-RYLT--GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---AQFAS----------   64 (158)
T ss_pred             CEEEEECCCCCcHHHHHH-HHHh--CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---hhHHh----------
Confidence            479999999999999997 7876  33333332211             1578899999974   24555          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc--CCCccCHHHHHHHHHHh-CCeEEEEecCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE--RRRQVTHSDGKKLAYAW-GVKFVETSVGLV  195 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~evSa~~~  195 (250)
                      ++|++++|||+++++||+++..|+.++.+.....++|+++||||.|+.  ..+.++.+++.++++.. ++.|+||||++|
T Consensus        65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  144 (158)
T cd04103          65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG  144 (158)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence            899999999999999999999999999876555679999999999985  35789999999999876 489999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQ  208 (250)
Q Consensus       196 ~~I~~lf~~l~~~  208 (250)
                      .||+++|..+++.
T Consensus       145 ~~i~~~f~~~~~~  157 (158)
T cd04103         145 LNVERVFQEAAQK  157 (158)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=4e-30  Score=203.71  Aligned_cols=146  Identities=18%  Similarity=0.291  Sum_probs=123.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+  ..|...+.++.+               .+++|||+|++  ..++..+++      
T Consensus         2 ~ki~i~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~------   72 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLF-RYAD--DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYR------   72 (165)
T ss_pred             eEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHcc------
Confidence            689999999999999998 8888  444433333221               57789999986  455666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+..+.+. ...+.|+++||||+|+.+.+.++.+++.++++.++++++++||++
T Consensus        73 ----~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (165)
T cd01865          73 ----GAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE  147 (165)
T ss_pred             ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence                899999999999999999999999998654 345789999999999987778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.|+.++|++++..+..
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         148 NINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=4.1e-30  Score=208.04  Aligned_cols=151  Identities=17%  Similarity=0.240  Sum_probs=125.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|.+  ..|...+.++++               .+++|||+|++  ..++..+++      
T Consensus         1 ~ki~v~G~~~vGKSsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~------   71 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLK-RFTE--DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYR------   71 (188)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHcc------
Confidence            479999999999999998 8887  444332322221               45789999986  445666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||+++++||+.+..|+.++.... ..+.|+++||||+|+.+.+.++.+++..+++..+++|+++||++
T Consensus        72 ----~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  146 (188)
T cd04125          72 ----GAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQ  146 (188)
T ss_pred             ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence                8999999999999999999999999987642 34689999999999987788889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      |.|++++|.+|++.+.......
T Consensus       147 ~~~i~~~f~~l~~~~~~~~~~~  168 (188)
T cd04125         147 SINVEEAFILLVKLIIKRLEEQ  168 (188)
T ss_pred             CCCHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999887544333

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=2.8e-30  Score=203.78  Aligned_cols=145  Identities=30%  Similarity=0.468  Sum_probs=123.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ ++..  +.+.+++.+++.              .+++|||+|++  ..++..+++       
T Consensus         2 ~ki~i~G~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (163)
T cd04176           2 YKVVVLGSGGVGKSALTV-QFVS--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK-------   71 (163)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHh-------
Confidence            579999999999999998 7887  455444444421              46789999986  566777777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||+++++||+++..|+..+.+.....++|+++||||+|+...+.+...++..+++.++++++++||++|
T Consensus        72 ---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (163)
T cd04176          72 ---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK  148 (163)
T ss_pred             ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence               89999999999999999999999999977655578999999999999776778888889999888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQA  209 (250)
Q Consensus       196 ~~I~~lf~~l~~~i  209 (250)
                      .|+.++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd04176         149 TMVNELFAEIVRQM  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=4.1e-30  Score=205.84  Aligned_cols=142  Identities=23%  Similarity=0.374  Sum_probs=119.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||+. +|..  ..|...+.+++.              .+.+|||+|++  ..+++.+++       
T Consensus         2 ~ki~iiG~~~vGKSsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP-------   71 (174)
T ss_pred             eEEEEECCCCCCHHHHHH-HHhc--CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcC-------
Confidence            689999999999999997 8887  455555544432              56789999986  567777887       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~  182 (250)
                         ++|++|+|||+++++||+++. .|+..+...  .+++|++|||||+|+.+.            +.++.+++.+++++
T Consensus        72 ---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  146 (174)
T cd01871          72 ---QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  146 (174)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence               899999999999999999996 698888654  357999999999999542            35889999999999


Q ss_pred             hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy5810         183 WGV-KFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      ++. +|+||||++|.|++++|+.+++.
T Consensus       147 ~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         147 IGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCcEEEEecccccCCHHHHHHHHHHh
Confidence            985 89999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=3.6e-30  Score=213.03  Aligned_cols=151  Identities=21%  Similarity=0.248  Sum_probs=127.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|++|||||||++ +|.+  ..+...+.++++               .+++|||+|++  ..++..+++    
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~-~l~~--~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~----   83 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILS-RFTR--NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR----   83 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhC----
Confidence            34789999999999999998 7877  344333333322               67799999986  455666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +++++|+|||++++.+|+.+..|+..+.+. ...++|+++||||+|+.+.+.++.+++..++..++++|+++||
T Consensus        84 ------~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA  156 (216)
T PLN03110         84 ------GAVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSA  156 (216)
T ss_pred             ------CCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999988654 3467999999999999887888999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++|.|++++|++++..+.+...
T Consensus       157 ~~g~~v~~lf~~l~~~i~~~~~  178 (216)
T PLN03110        157 LEATNVEKAFQTILLEIYHIIS  178 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999998877433

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=5.2e-30  Score=207.79  Aligned_cols=146  Identities=24%  Similarity=0.335  Sum_probs=121.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      ||+++|++|||||||++ +|.+  ..|...+.++++              .+.+|||+|++  ..+++.+++        
T Consensus         2 kivivG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~--------   70 (189)
T cd04134           2 KVVVLGDGACGKTSLLN-VFTR--GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYA--------   70 (189)
T ss_pred             EEEEECCCCCCHHHHHH-HHhc--CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccccccc--------
Confidence            79999999999999998 8887  455444444432              56789999986  567777888        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHHHHHHh
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKKLAYAW  183 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~  183 (250)
                        ++|++|+|||+++++||+.+. .|+..+.+.  ..+.|++|||||+|+.+.+            .++.+++.++++..
T Consensus        71 --~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  146 (189)
T cd04134          71 --DTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI  146 (189)
T ss_pred             --CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence              899999999999999999986 699988654  3589999999999996533            46778888999888


Q ss_pred             C-CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         184 G-VKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       184 ~-~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      + ++|+||||++|.||+++|.++++.+....
T Consensus       147 ~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         147 NALRYLECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence            7 68999999999999999999998887433

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=4.6e-30  Score=203.78  Aligned_cols=147  Identities=22%  Similarity=0.391  Sum_probs=124.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ ++.+  ..|.+.+.++.+               .+.+|||+|++  ..++..+++     
T Consensus         3 ~~ki~vvG~~~~GKSsl~~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~-----   74 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLL-RFSE--DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYR-----   74 (167)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhh--CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhC-----
Confidence            4789999999999999998 8887  444444433322               56799999986  444555666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++++|+.+..|+..+.+. ...++|+++||||+|+.+.+.+..+++..+++.++++++++||+
T Consensus        75 -----~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (167)
T cd01867          75 -----GAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK  148 (167)
T ss_pred             -----CCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence                 899999999999999999999999999764 34678999999999998777888889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.|++++|+++++.+..
T Consensus       149 ~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         149 ANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999988764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2.1e-30  Score=204.15  Aligned_cols=144  Identities=22%  Similarity=0.349  Sum_probs=126.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      ||+++|++|||||||++ +|.+  ..|.+.+.++.+               .+.+||++|++  ..+...+++       
T Consensus         1 Ki~vvG~~~vGKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~-------   70 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLIN-RLIN--GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYR-------   70 (162)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH--SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHT-------
T ss_pred             CEEEECCCCCCHHHHHH-HHHh--hcccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence            79999999999999998 8888  566666666652               57899999986  344456666       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++|+|||+++++||+.+..|+..+..... .++|++|||||.|+.+.+.++.+++++++++++.+|+|+||+++
T Consensus        71 ---~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  146 (162)
T PF00071_consen   71 ---NSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG  146 (162)
T ss_dssp             ---TESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred             ---cccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence               89999999999999999999999999977643 57999999999999888899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .||.++|..+++.+.
T Consensus       147 ~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  147 ENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=4.8e-30  Score=202.59  Aligned_cols=146  Identities=21%  Similarity=0.338  Sum_probs=122.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++++  ..+...+.++++               .+.+|||+|++  ..+++.+++      
T Consensus         1 ~ki~~vG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------   71 (168)
T cd04119           1 IKVISMGNSGVGKSCIIK-RYCE--GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYK------   71 (168)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhc------
Confidence            479999999999999998 8887  444433333321               56799999986  445566666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC----CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI----GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                          ++|++|+|||++++++|+.+..|+.++.+....    .+.|+++|+||+|+.+.+.++.+++..++...+++++++
T Consensus        72 ----~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (168)
T cd04119          72 ----DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET  147 (168)
T ss_pred             ----cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence                899999999999999999999999999776442    578999999999997667788899999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~  210 (250)
                      ||++|.|+.++|++|++.+.
T Consensus       148 Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         148 SACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=8.7e-30  Score=205.68  Aligned_cols=148  Identities=22%  Similarity=0.342  Sum_probs=121.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ +|.+  ..+..++.++++               .+.+|||+|++  ..+++.+++      
T Consensus         1 ~ki~vvG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------   71 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLI-VYSQ--GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYP------   71 (187)
T ss_pred             CeEEEECCCCCCHHHHHH-HHHh--CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCC------
Confidence            489999999999999998 8887  444433333321               57789999986  455666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC----CccCHHHHHHHHHHhCC-eEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR----RQVTHSDGKKLAYAWGV-KFV  188 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~  188 (250)
                          ++|++|+|||+++++||+++. .|+..+...  .+++|+++||||+|+...    +.++.+++.+++..+++ +++
T Consensus        72 ----~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~  145 (187)
T cd04132          72 ----DVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL  145 (187)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence                899999999999999999996 598887543  367999999999998543    36788899999999998 899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++||++|.||.++|..+++.+.....
T Consensus       146 e~Sa~~~~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         146 ECSAKTMENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             EccCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999988875433

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=6.7e-30  Score=206.04  Aligned_cols=146  Identities=12%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|..  ..|.+.+.++++               .+++|||+|++  ..+++.+++      
T Consensus         1 ~Ki~vlG~~~vGKTsLi~-~~~~--~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~------   71 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMV-KYVE--GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCN------   71 (182)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCc------
Confidence            479999999999999997 8887  455444444432               56789999986  566777777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-----CCccCHHHHHHHHHHhCCeEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-----RRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                          ++|++++|||+++++||+++..|+.++.+.. ....| ++||||+|+..     .+....+++.++++.+++++++
T Consensus        72 ----~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e  145 (182)
T cd04128          72 ----DAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIF  145 (182)
T ss_pred             ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEE
Confidence                8999999999999999999999999987652 34566 68899999842     1222346788899999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +||++|.|++++|+++++.+.+.
T Consensus       146 ~SAk~g~~v~~lf~~l~~~l~~~  168 (182)
T cd04128         146 CSTSHSINVQKIFKIVLAKAFDL  168 (182)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=7e-30  Score=207.32  Aligned_cols=152  Identities=22%  Similarity=0.351  Sum_probs=124.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc---cccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|.+...   .+.++.+.++.           .+.+|||+|++  ..++..+++       
T Consensus         1 ~Ki~vvG~~~vGKTSli~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-------   72 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLV-RFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYR-------   72 (191)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHcc-------
Confidence            479999999999999998 7877311   22233332221           56799999986  344556666       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++|+|||++++++|+++..|+..+.+. ...++|+++||||+|+...+.+..+++..+++.++++|+|+||++|
T Consensus        73 ---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~  148 (191)
T cd04112          73 ---DAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG  148 (191)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence               899999999999999999999999998765 3457899999999999776788888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhh
Q psy5810         196 YKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~  215 (250)
                      .|++++|.++++.+......
T Consensus       149 ~~v~~l~~~l~~~~~~~~~~  168 (191)
T cd04112         149 LNVELAFTAVAKELKHRKYE  168 (191)
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            99999999999988766433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=1.3e-29  Score=200.85  Aligned_cols=143  Identities=22%  Similarity=0.396  Sum_probs=118.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ ++++  +.|..++.++..              .+.+|||+|++  ..++..++.       
T Consensus         2 ~kv~~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVL-RFVK--GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSIS-------   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhh-------
Confidence            579999999999999998 8887  444444444322              56799999987  333444555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                         ++|++++|||+++++||+.+..|+..+.+...  ..++|+++||||+|+.+.+.+..+++..++..++++|+|+||+
T Consensus        72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~  148 (165)
T cd04140          72 ---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK  148 (165)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence               89999999999999999999999888765432  2579999999999997767888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIAR  207 (250)
Q Consensus       194 ~~~~I~~lf~~l~~  207 (250)
                      +|.|++++|++|++
T Consensus       149 ~g~~v~~~f~~l~~  162 (165)
T cd04140         149 TNHNVQELFQELLN  162 (165)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999999985

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=1.6e-29  Score=201.57  Aligned_cols=146  Identities=18%  Similarity=0.279  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      ||+++|++|||||||++ +|+.  ..|...|.++++               .+.+|||+|++  ..++..+++       
T Consensus         2 ki~ivG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (170)
T cd04108           2 KVIVVGDLSVGKTCLIN-RFCK--DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYR-------   71 (170)
T ss_pred             EEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhc-------
Confidence            79999999999999998 8888  556555555543               46799999986  456667777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                         ++|++++|||++++++|+.+..|+.++.+.....+.|+++||||.|+.+.+  .+..+++.++++.++.+|+++||+
T Consensus        72 ---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  148 (170)
T cd04108          72 ---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSAL  148 (170)
T ss_pred             ---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECC
Confidence               899999999999999999999999998766545568899999999985533  345677888888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.|++++|+.+++.+.+
T Consensus       149 ~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         149 SGENVREFFFRVAALTFE  166 (170)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=1.5e-29  Score=200.29  Aligned_cols=146  Identities=23%  Similarity=0.350  Sum_probs=122.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ ++.+  ..+..    +.+.++.           .+++|||+|++  ..++..+++     
T Consensus         2 ~~ki~i~G~~~vGKSsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   73 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLL-RFAD--DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR-----   73 (166)
T ss_pred             eEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhC-----
Confidence            3689999999999999998 7887  33333    3332221           57889999986  344555666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.++.+++..+++.++++|+++||+
T Consensus        74 -----~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (166)
T cd01869          74 -----GAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK  147 (166)
T ss_pred             -----cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence                 8999999999999999999999999986642 3578999999999998777888899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.|++++|.++++.+.
T Consensus       148 ~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         148 NATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=1.3e-29  Score=198.92  Aligned_cols=144  Identities=22%  Similarity=0.362  Sum_probs=121.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|++  ..+...+.++.+              .+.+|||+|++  +.++..+++       
T Consensus         2 ~ki~iiG~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~-------   71 (162)
T cd04138           2 YKLVVVGAGGVGKSALTI-QLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR-------   71 (162)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHh-------
Confidence            579999999999999998 8887  444444444432              36789999986  456666777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++++.+|+++..|+..+.+.....+.|+++|+||+|+.+ +.+...++.++++.++++++++||++|
T Consensus        72 ---~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (162)
T cd04138          72 ---TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTR  147 (162)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCC
Confidence               8999999999999999999999999998765556899999999999865 567788888999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQA  209 (250)
Q Consensus       196 ~~I~~lf~~l~~~i  209 (250)
                      .|++++|+++++.+
T Consensus       148 ~gi~~l~~~l~~~~  161 (162)
T cd04138         148 QGVEEAFYTLVREI  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.7e-29  Score=209.42  Aligned_cols=147  Identities=18%  Similarity=0.270  Sum_probs=121.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ...+||+++|++|||||||++ +|..  +.|...+.++++               .+.+|||+|++  ..++..+++   
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~-~~~~--~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---   84 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVK-RHLT--GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---   84 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHH-HHhh--CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc---
Confidence            556889999999999999998 7876  334333333322               56789999987  566777788   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++|+|||+++++||+.+..|+.++.+.  ..++|++|||||+|+.. +.+..+++ ++++..+++|+|+|
T Consensus        85 -------~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~S  153 (219)
T PLN03071         85 -------HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEIS  153 (219)
T ss_pred             -------cccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcC
Confidence                   899999999999999999999999999764  36799999999999864 45555555 78888889999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |++|.||+++|.+|++.+.+.
T Consensus       154 Ak~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        154 AKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999988754

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.2e-29  Score=200.30  Aligned_cols=145  Identities=27%  Similarity=0.456  Sum_probs=122.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      ||+++|++|||||||++ ++.+  ..+...+.++..              .+.+|||+|++  ..++..+++        
T Consensus         2 ki~v~G~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~--------   70 (164)
T smart00173        2 KLVVLGSGGVGKSALTI-QFVQ--GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMR--------   70 (164)
T ss_pred             EEEEECCCCCCHHHHHH-HHHh--CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHh--------
Confidence            79999999999999998 8887  344433333321              57789999986  344555666        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                        ++|++++|||++++++|+.+..|...+.+.....+.|+++||||+|+...+.++.+++..+++.++.+|+++||++|.
T Consensus        71 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  148 (164)
T smart00173       71 --TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERV  148 (164)
T ss_pred             --hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCC
Confidence              899999999999999999999999988776555689999999999998777788888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQAG  210 (250)
Q Consensus       197 ~I~~lf~~l~~~i~  210 (250)
                      |++++|++|++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=2e-29  Score=198.77  Aligned_cols=146  Identities=25%  Similarity=0.383  Sum_probs=122.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++++  ..+...+.++..              .+.+|||+|++  ..++..+++      
T Consensus         2 ~~ki~i~G~~~~GKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   72 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTI-QFIQ--SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMR------   72 (164)
T ss_pred             ceEEEEECCCCCcHHHHHH-HHHh--CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHh------
Confidence            3689999999999999998 7876  333333333321              46789999976  445555666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+...+.++.+++.++++..+++++++||++
T Consensus        73 ----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (164)
T cd04145          73 ----TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKD  148 (164)
T ss_pred             ----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCC
Confidence                8999999999999999999999999997765567899999999999987777888889999999899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQA  209 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i  209 (250)
                      |.|++++|+++++.+
T Consensus       149 ~~~i~~l~~~l~~~~  163 (164)
T cd04145         149 RLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=4.3e-29  Score=198.33  Aligned_cols=143  Identities=17%  Similarity=0.214  Sum_probs=115.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++..  ..+...+.++.+               .+.+|||+|++  ..++..++.      
T Consensus         1 ~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------   71 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVK-RHLT--GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYI------   71 (166)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhc------
Confidence            479999999999999998 7776  333333333322               46789999987  455566666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||+++++||+.+..|+.++.+..  .++|+++||||+|+.+ +.+. .+..++++..+++++|+||++
T Consensus        72 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~  143 (166)
T cd00877          72 ----GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKS  143 (166)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCC
Confidence                8999999999999999999999999997653  3899999999999974 3443 345667777888999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.|++++|++|++.+.+
T Consensus       144 ~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         144 NYNFEKPFLWLARKLLG  160 (166)
T ss_pred             CCChHHHHHHHHHHHHh
Confidence            99999999999988875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=4.4e-29  Score=198.74  Aligned_cols=146  Identities=23%  Similarity=0.302  Sum_probs=123.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCcc---ccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQR---CLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~~---~~~~~~~~~~~~  112 (250)
                      .+||+++|++|||||||++ ++..  ..+...+.++++               .+.+|||+|+++   .++..+++    
T Consensus         2 ~~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----   74 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTY-RFCA--GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYR----   74 (170)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHh--CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhc----
Confidence            4689999999999999998 7876  334333333321               577999999872   45666676    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+.......++|+++||||+|+.+.+.++.+++.++++..+++|+|+||
T Consensus        75 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (170)
T cd04115          75 ------NVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA  148 (170)
T ss_pred             ------CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence                  89999999999999999999999999977655578999999999999888888999999999999999999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q psy5810         193 GL---VYKTDELLVGIARQA  209 (250)
Q Consensus       193 ~~---~~~I~~lf~~l~~~i  209 (250)
                      ++   +.+++++|.++++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=5e-29  Score=198.68  Aligned_cols=143  Identities=27%  Similarity=0.372  Sum_probs=119.3

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      |+|+|++|||||||++ +|.+  ..|...+.++..              .+++|||+|++  ..+++.++.         
T Consensus         1 i~i~G~~~vGKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---------   68 (174)
T smart00174        1 LVVVGDGAVGKTCLLI-SYTT--NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYP---------   68 (174)
T ss_pred             CEEECCCCCCHHHHHH-HHHh--CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcC---------
Confidence            6899999999999998 8887  455544444432              47799999986  456666777         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHHhC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYAWG  184 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~  184 (250)
                       ++|++|+|||+++++||+.+. .|+..+.+.  .+++|+++||||+|+...            +.++.+++.++++.++
T Consensus        69 -~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (174)
T smart00174       69 -DTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG  145 (174)
T ss_pred             -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence             899999999999999999996 599988654  368999999999998542            3488899999999999


Q ss_pred             C-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 V-KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      . +|+|+||++|.||+++|..+++.+.+
T Consensus       146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      146 AVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            6 89999999999999999999987653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=5.9e-29  Score=195.76  Aligned_cols=142  Identities=20%  Similarity=0.316  Sum_probs=119.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce-----------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      +||+++|++|||||||++ ++.+  ..+...+.+++                 ..+.+|||+|++  ..++..+++    
T Consensus         1 ~kv~~vG~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----   73 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQ-RFVK--GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYR----   73 (162)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhc----
Confidence            479999999999999998 7887  33333333332                 157899999986  556666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++++|+.+..|+..+.+.  ..++|+++|+||+|+..++.++.+++..+++.++++++++||
T Consensus        74 ------~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  145 (162)
T cd04106          74 ------GAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSV  145 (162)
T ss_pred             ------CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence                  899999999999999999999999998653  368999999999999777788889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      ++|.|++++|.+|...
T Consensus       146 ~~~~~v~~l~~~l~~~  161 (162)
T cd04106         146 KDDFNVTELFEYLAEK  161 (162)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=3.8e-29  Score=197.88  Aligned_cols=145  Identities=28%  Similarity=0.388  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc---ccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR---CLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~---~~~~~~~~~~~~~~~  115 (250)
                      ||+++|++|||||||++ +++.  ..|...+.++..              .+.+|||+|+++   .....+++       
T Consensus         1 ki~vvG~~~~GKtsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-------   70 (165)
T cd04146           1 KIAVLGASGVGKSALVV-RFLT--KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIR-------   70 (165)
T ss_pred             CEEEECCCCCcHHHHHH-HHHh--CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHH-------
Confidence            59999999999999998 7776  334333333321              477999999873   22344455       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                         ++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+.+.+.++.+++.++++..+++|+++||++
T Consensus        71 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  147 (165)
T cd04146          71 ---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAE  147 (165)
T ss_pred             ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCC
Confidence               89999999999999999999999998876543 45799999999999977788899999999999999999999999


Q ss_pred             CC-CHHHHHHHHHHHHH
Q psy5810         195 VY-KTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~-~I~~lf~~l~~~i~  210 (250)
                      |. ||+++|.++++.+.
T Consensus       148 ~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         148 DYDGVHSVFHELCREVR  164 (165)
T ss_pred             CchhHHHHHHHHHHHHh
Confidence            95 99999999998654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=9.4e-29  Score=196.47  Aligned_cols=145  Identities=16%  Similarity=0.197  Sum_probs=120.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|++|||||||++ +|.+  ..+.+.+.++++               .+++|||+|++  +.++..+++    
T Consensus         4 ~~~ki~vvG~~~~GKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~----   76 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMN-RYVT--NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR----   76 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHH-HHHc--CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc----
Confidence            35789999999999999998 8887  444433333321               56789999987  566777777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFV  188 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  188 (250)
                            ++|++++|||+++++||+.+..|+.++.+...   ..++|+++||||+|+. .+.++.+++.+++++++. +++
T Consensus        77 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          77 ------GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             ------CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEE
Confidence                  89999999999999999999999998876532   2568999999999986 467888999999999884 799


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~  208 (250)
                      |+||++|.|+.++|.++++.
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04142 RRP22 RRP22 subfamily

Probab=99.96  E-value=1.5e-28  Score=200.76  Aligned_cols=159  Identities=17%  Similarity=0.257  Sum_probs=120.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCccc--cCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQRC--LTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~~~--~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ +|.+  ..|...+.++.+               .+.+|||+|....  .....+..  ...
T Consensus         1 ~kI~ivG~~~vGKTsLi~-~~~~--~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~--~~~   75 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVR-QFLA--QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMD--PRF   75 (198)
T ss_pred             CEEEEECCCCCcHHHHHH-HHHc--CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHH--HHH
Confidence            479999999999999998 8887  344433333321               4668999997521  11110000  011


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEEEEe
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFVETS  191 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~evS  191 (250)
                      ..++++|++|+|||+++++||+.+..|+..+.+..  ...++|+++||||+|+...+.++.+++..++. .++++|+|+|
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S  155 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECS  155 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEec
Confidence            12238999999999999999999999999887654  24679999999999997777788887877764 5689999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      |++|.||+++|+.+++.+....+.
T Consensus       156 ak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         156 AKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCCCHHHHHHHHHHHhhccCCC
Confidence            999999999999999988765444

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=1.3e-28  Score=194.64  Aligned_cols=145  Identities=23%  Similarity=0.275  Sum_probs=120.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ ++.+.  .+...+.++.+               .+.+||++|++  ..+++.+++     
T Consensus         3 ~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-----   74 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLS-RFTRN--EFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYR-----   74 (165)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHC-----
Confidence            3689999999999999998 78763  33322222221               56799999986  455566666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           +++++|+|||++++.+|+++.+|+..+.+. ...++|+++||||+|+...+.+..++...++...+++|+|+||+
T Consensus        75 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (165)
T cd01868          75 -----GAVGALLVYDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL  148 (165)
T ss_pred             -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence                 899999999999999999999999998665 33468999999999998777888889999999889999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQA  209 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i  209 (250)
                      +|.|++++|++++..+
T Consensus       149 ~~~~v~~l~~~l~~~i  164 (165)
T cd01868         149 DGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=1.8e-28  Score=194.92  Aligned_cols=146  Identities=24%  Similarity=0.367  Sum_probs=121.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ ++.+.  .+...+.++    .           ..+.+|||+|++  ..+...+++      
T Consensus         5 ~ki~vvG~~~vGKSsLl~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   75 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLL-QFTDK--RFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYR------   75 (168)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc------
Confidence            679999999999999998 78873  333222222    1           157799999986  344455566      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||+++++||+.+..|+.++.+.. .+++|+++||||.|+.+.+.++.+++..++...+++|+|+||++
T Consensus        76 ----~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (168)
T cd01866          76 ----GAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKT  150 (168)
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                8999999999999999999999999986653 46799999999999976677888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      +.|++++|.++++.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=1.8e-28  Score=199.04  Aligned_cols=147  Identities=18%  Similarity=0.232  Sum_probs=120.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc-cccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +||+|+|++|||||||++ +|.+  ..|.. .+.++++               .+.+|||+|++  ..++..+++     
T Consensus         1 ~ki~vvG~~~vGKSsLi~-~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-----   72 (193)
T cd04118           1 VKVVMLGKESVGKTSLVE-RYVH--HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYR-----   72 (193)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcC-----
Confidence            479999999999999998 7887  33332 2333321               45689999986  455666676     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC----CCccCHHHHHHHHHHhCCeEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER----RRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                           ++|++++|||++++.+|+.+..|+..+.+.  ..+.|+++|+||+|+.+    .+.++.+++.+++..+++++++
T Consensus        73 -----~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~  145 (193)
T cd04118          73 -----GAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFE  145 (193)
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEE
Confidence                 899999999999999999999999998653  35789999999999843    2466777888899988999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +||++|.|++++|+++++.+.+..
T Consensus       146 ~Sa~~~~gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         146 TSSKTGQNVDELFQKVAEDFVSRA  169 (193)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999887544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=1.9e-28  Score=194.61  Aligned_cols=146  Identities=28%  Similarity=0.419  Sum_probs=124.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|.+  ..+..++.++..              .+++|||+|++  ..++..+++       
T Consensus         2 ~ki~liG~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-------   71 (168)
T cd04177           2 YKIVVLGAGGVGKSALTV-QFVQ--NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIK-------   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHh-------
Confidence            579999999999999998 8887  444444444432              45789999976  566677777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~  194 (250)
                         .++++++|||++++++|+.+..|...+.+.....+.|++++|||.|+.+.+.++.+++..+++.++ ++++++||++
T Consensus        72 ---~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  148 (168)
T cd04177          72 ---SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK  148 (168)
T ss_pred             ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence               899999999999999999999999999776556789999999999998777888888888988888 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~  210 (250)
                      +.|++++|.+++.++.
T Consensus       149 ~~~i~~~f~~i~~~~~  164 (168)
T cd04177         149 RTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=1.5e-28  Score=193.97  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=119.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +||+++|++|||||||++ ++......|.+.+.+++                ..+.+|||+|++  ..++..++.     
T Consensus         1 ~ki~vvG~~~~GKtsl~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-----   74 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQ-MFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWE-----   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhC-----
Confidence            489999999999999998 77653223444433332                156799999986  344455555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++++|+.+..|+..+.+..  .++|+++||||+|+.+.+.++..++..++..++++++++||+
T Consensus        75 -----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (164)
T cd04101          75 -----SPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSAL  147 (164)
T ss_pred             -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence                 8999999999999999999999999986643  579999999999997777788888888888888999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQA  209 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i  209 (250)
                      ++.|++++|+.+++.+
T Consensus       148 ~~~gi~~l~~~l~~~~  163 (164)
T cd04101         148 RGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCChHHHHHHHHHHh
Confidence            9999999999999765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=1.8e-28  Score=194.02  Aligned_cols=144  Identities=22%  Similarity=0.295  Sum_probs=119.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ ++..  ..+..++.++.+               .+.+|||+|++  ..++..+++     
T Consensus         3 ~~kv~vvG~~~~GKTsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-----   74 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQ-RFKS--GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYR-----   74 (165)
T ss_pred             eeEEEEECCCCCCHHHHHH-HHhh--CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhc-----
Confidence            4789999999999999998 7876  344333333321               56799999986  445556666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEec
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSV  192 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa  192 (250)
                           ++|++++|||++++.||+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.++++.++. .++|+||
T Consensus        75 -----~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (165)
T cd01864          75 -----SANGAIIAYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA  148 (165)
T ss_pred             -----cCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence                 899999999999999999999999999654 346899999999999987778888899999998886 5899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      ++|.|++++|+++++.
T Consensus       149 ~~~~~v~~~~~~l~~~  164 (165)
T cd01864         149 KESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=201.08  Aligned_cols=150  Identities=22%  Similarity=0.326  Sum_probs=125.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ ++..  ..+...+.++++               .+.+|||+|++  ..++..+++     
T Consensus         6 ~~kivivG~~gvGKStLi~-~l~~--~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~-----   77 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLL-QFTD--KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR-----   77 (210)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc-----
Confidence            4789999999999999998 7877  333333322221               46799999986  445566677     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++|+|||++++++|+.+..|+..+.+. ...+.|+++|+||+|+.+.+.++.+++.++++.++++|+++||+
T Consensus        78 -----~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  151 (210)
T PLN03108         78 -----GAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (210)
T ss_pred             -----cCCEEEEEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence                 899999999999999999999999988654 33579999999999998878899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++.||+++|.++++.+.++..
T Consensus       152 ~~~~v~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        152 TAQNVEEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998876544

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=1.7e-28  Score=193.20  Aligned_cols=143  Identities=24%  Similarity=0.330  Sum_probs=119.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+.  .+...+.++.               ..+++||++|++  ..++..+++      
T Consensus         1 ~ki~v~G~~~vGKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------   71 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLH-RFVEN--KFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYR------   71 (161)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHhC--CCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhc------
Confidence            479999999999999998 78763  3332222221               257799999986  444555666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+..+... ..+++|+++|+||+|+.+.+.++.+++..+++.++++++++||++
T Consensus        72 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (161)
T cd04113          72 ----GAAGALLVYDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALT  146 (161)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCC
Confidence                899999999999999999999999988554 346899999999999987778889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQ  208 (250)
Q Consensus       195 ~~~I~~lf~~l~~~  208 (250)
                      +.|+.++|+++++.
T Consensus       147 ~~~i~~~~~~~~~~  160 (161)
T cd04113         147 GENVEEAFLKCARS  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=2.7e-28  Score=192.62  Aligned_cols=143  Identities=17%  Similarity=0.197  Sum_probs=116.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++..  ..|.+.+.++.               ..+.+|||+|++  ..++..+++      
T Consensus         1 ~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   71 (161)
T cd04124           1 VKIILLGDSAVGKSKLVE-RFLM--DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYH------   71 (161)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhC------
Confidence            479999999999999998 7877  44444333221               156799999987  466677777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+.+.  .++.|+++|+||+|+...  + .++..++++..+++++++||++
T Consensus        72 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~  142 (161)
T cd04124          72 ----KAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAAD  142 (161)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCC
Confidence                899999999999999999999999999653  357999999999998531  2 3456677888889999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|+.+++.+.+.
T Consensus       143 ~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         143 GTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999887754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=1.7e-28  Score=200.44  Aligned_cols=139  Identities=16%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             EcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          57 HSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        57 iG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +|++|||||||++ +|+.  ..|...+.++++               .+.+|||+|++  ..+++.+|+          +
T Consensus         1 vG~~~vGKTsLi~-r~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~----------~   67 (200)
T smart00176        1 VGDGGTGKTTFVK-RHLT--GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI----------Q   67 (200)
T ss_pred             CCCCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc----------C
Confidence            6999999999998 8887  455555555543               56689999987  567778888          9


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|++|+|||++++.||+.+..|+.++.+..  .++|++|||||+|+.. +.+..++ ..+++..++.|+||||++|.||.
T Consensus        68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~  143 (200)
T smart00176       68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFE  143 (200)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999999997653  6899999999999854 4565554 46888889999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy5810         200 ELLVGIARQAGLN  212 (250)
Q Consensus       200 ~lf~~l~~~i~~~  212 (250)
                      ++|.+|++.+.+.
T Consensus       144 ~~F~~l~~~i~~~  156 (200)
T smart00176      144 KPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0097|consensus

Probab=99.96  E-value=6e-29  Score=185.50  Aligned_cols=154  Identities=23%  Similarity=0.311  Sum_probs=134.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+|.+|||+-|||||+|++ +|..  ..|..    ++|..++           +++||||+||+  +..+..||+     
T Consensus        11 ifkyiiigdmgvgkscllh-qfte--kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyr-----   82 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLH-QFTE--KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR-----   82 (215)
T ss_pred             eEEEEEEccccccHHHHHH-HHHH--HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhc-----
Confidence            3679999999999999998 8887  44433    3333322           78899999998  677889999     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++-+.++|||++++.+++.+..|+...... ..++..++++|||.|++..|.|+.+++.+|+++.|+.|+|+||+
T Consensus        83 -----gaagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sak  156 (215)
T KOG0097|consen   83 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAK  156 (215)
T ss_pred             -----cccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEeccc
Confidence                 999999999999999999999999987543 55778899999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         194 LVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      +|.|+++.|-+.++++.+.......
T Consensus       157 tg~nvedafle~akkiyqniqdgsl  181 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQNIQDGSL  181 (215)
T ss_pred             ccCcHHHHHHHHHHHHHHhhhcCcc
Confidence            9999999999999999988776553

>KOG0395|consensus

Probab=99.96  E-value=4.5e-28  Score=196.91  Aligned_cols=151  Identities=31%  Similarity=0.528  Sum_probs=135.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .||+++|.+|||||+|+. +|..  ..|.+.|.|+++              .+.|+||+|++  ..+...+.+       
T Consensus         4 ~kvvvlG~~gVGKSal~~-qf~~--~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~-------   73 (196)
T KOG0395|consen    4 YKVVVLGAGGVGKSALTI-QFLT--GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIR-------   73 (196)
T ss_pred             eEEEEECCCCCCcchhee-eecc--cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhc-------
Confidence            459999999999999996 8988  889999999987              45689999964  444555666       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++||+++++.||+.+..++..|.+......+|+++||||+|+...|.|+.+++..++..++++|+|+||+.+
T Consensus        74 ---~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~  150 (196)
T KOG0395|consen   74 ---NGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN  150 (196)
T ss_pred             ---cCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence               89999999999999999999999999977777788999999999999988999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhh
Q psy5810         196 YKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~  215 (250)
                      .+++++|..|++.+......
T Consensus       151 ~~v~~~F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen  151 YNVDEVFYELVREIRLPREG  170 (196)
T ss_pred             cCHHHHHHHHHHHHHhhhcc
Confidence            99999999999988774443

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=9.3e-28  Score=191.63  Aligned_cols=141  Identities=21%  Similarity=0.358  Sum_probs=117.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||+. ++.+  ..|...+.++..              .+++|||+|++  ..+++.+++       
T Consensus         1 ~k~~i~G~~~~GKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-------   70 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIV-SYTT--NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYP-------   70 (173)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccC-------
Confidence            479999999999999997 7877  455555555432              56789999986  556667777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~  182 (250)
                         ++|++|+|||+++++||+.+. .|+..+.+.  .++.|+++||||+|+..            .+.++.+++..+++.
T Consensus        71 ---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~  145 (173)
T cd04130          71 ---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK  145 (173)
T ss_pred             ---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence               899999999999999999985 699888643  35799999999999853            467888999999999


Q ss_pred             hCC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810         183 WGV-KFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      .+. +|+|+||++|.|++++|+.++.
T Consensus       146 ~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         146 IGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             hCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            987 8999999999999999998874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=4.9e-28  Score=203.87  Aligned_cols=150  Identities=19%  Similarity=0.296  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|++  ..|...+.++++              .+.+|||+|++  ..+...++.       
T Consensus         1 ~KVvvlG~~gvGKTSLi~-r~~~--~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~-------   70 (247)
T cd04143           1 YRMVVLGASKVGKTAIVS-RFLG--GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSIL-------   70 (247)
T ss_pred             CEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhc-------
Confidence            369999999999999998 8887  445444444442              56789999986  344555566       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh--------CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCe
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK--------YIGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVK  186 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~--------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~  186 (250)
                         ++|++|+|||+++++||+++..|+.++....        ...++|+++||||+|+...+.+..+++.+++.. .++.
T Consensus        71 ---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          71 ---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             ---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence               8999999999999999999999999986542        235789999999999977677888888888764 4678


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         187 FVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       187 ~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |+++||++|.||+++|.+|+..+.....
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~p~e  175 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKLPNE  175 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhccccc
Confidence            9999999999999999999987644433

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.96  E-value=8.7e-28  Score=189.20  Aligned_cols=146  Identities=25%  Similarity=0.363  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+.  .+...+.++.               ..+.+||++|+.  ..++..++.      
T Consensus         1 ~kv~v~G~~~~GKTtli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------   71 (164)
T smart00175        1 FKIILIGDSGVGKSSLLS-RFTDG--KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYR------   71 (164)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhC------
Confidence            479999999999999998 78773  3333222221               156799999975  344555666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+.++. .+++|+++|+||+|+.+.+.+..+++.++++..+++++|+||++
T Consensus        72 ----~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  146 (164)
T smart00175       72 ----GAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKT  146 (164)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCC
Confidence                8999999999999999999999999987653 35899999999999977677888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      +.|++++|+++.+.+.+
T Consensus       147 ~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      147 NTNVEEAFEELAREILK  163 (164)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=5.3e-28  Score=192.61  Aligned_cols=146  Identities=21%  Similarity=0.341  Sum_probs=117.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      +.+||+++|++|||||||++ +|.+  ..|. ..+.++++               .+.+||++|++  ..++..++.   
T Consensus         3 ~~~kv~~vG~~~vGKTsli~-~~~~--~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~---   76 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLR-AFLG--RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELA---   76 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHH-HHhC--CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhh---
Confidence            45789999999999999998 8888  4444 33333321               46689999987  456677777   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET  190 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev  190 (250)
                             ++|++++|||++++.+|+.+..|+..+..   ..++|+++|+||+|+.+.+.+...+..++++.+++. ++++
T Consensus        77 -------~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (169)
T cd01892          77 -------ACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF  146 (169)
T ss_pred             -------cCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence                   89999999999999999999999987632   247999999999999665555556677888888874 7999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHh
Q psy5810         191 SVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ||++|.|+.++|+.+++.+..
T Consensus       147 Sa~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         147 SSKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             EeccCccHHHHHHHHHHHhhC
Confidence            999999999999999987753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=1.5e-27  Score=190.13  Aligned_cols=143  Identities=24%  Similarity=0.389  Sum_probs=118.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|..  ..|.+.+.++..              .+.+|||+|+.  ..+++.++.       
T Consensus         1 ~ki~i~G~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-------   70 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLM-SYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP-------   70 (174)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCC-------
Confidence            479999999999999998 8887  444444444332              46789999986  566777777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~  182 (250)
                         ++|++++|||++++.+|+.+. .|+..+.+.  .++.|+++||||+|+.+.            +.++.+++..+++.
T Consensus        71 ---~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  145 (174)
T cd04135          71 ---MTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE  145 (174)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence               899999999999999999996 688888654  578999999999998532            36888899999999


Q ss_pred             hCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         183 WGV-KFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      .+. +|+|+||++|.||+++|+.++..+
T Consensus       146 ~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         146 IGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            986 699999999999999999999865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03118 Rab family protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=195.19  Aligned_cols=153  Identities=24%  Similarity=0.255  Sum_probs=122.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      ..+||+|+|++|||||||++ +|.+.. ....++.+.+.           ..+.+|||+|++  ..++..+++       
T Consensus        13 ~~~kv~ivG~~~vGKTsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-------   84 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLV-SFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR-------   84 (211)
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh-------
Confidence            35789999999999999998 777631 11222222211           156799999986  455566777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                         ++|++|+|||++++++|+++.. |...+.......+.|+++||||+|+...+.++.+++..++...+++|+|+||++
T Consensus        85 ---~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~  161 (211)
T PLN03118         85 ---NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKT  161 (211)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence               8999999999999999999976 766665443345689999999999987778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy5810         195 VYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~  213 (250)
                      +.|++++|++|+..+....
T Consensus       162 ~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        162 RENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            9999999999999887643

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=1.8e-27  Score=187.48  Aligned_cols=144  Identities=26%  Similarity=0.375  Sum_probs=120.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+  ..+...+.++.+               .+.+||++|++  ..++..+++      
T Consensus         2 ~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   72 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVL-RFVK--NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYR------   72 (163)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhc------
Confidence            689999999999999998 7887  333332222221               56799999986  444555666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+..+.+.. ...+|+++++||+|+...+.++.++...++..++++++++||++
T Consensus        73 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd01860          73 ----GAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKT  147 (163)
T ss_pred             ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCC
Confidence                8999999999999999999999999987653 36799999999999976677888899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQA  209 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i  209 (250)
                      |.|+.++|+++++.+
T Consensus       148 ~~~v~~l~~~l~~~l  162 (163)
T cd01860         148 GENVNELFTEIAKKL  162 (163)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=2.7e-27  Score=186.10  Aligned_cols=142  Identities=25%  Similarity=0.405  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      ||+++|++|||||||++ ++.+.  .+...+.++.               ..+.+|||+|+.  ..++..+++       
T Consensus         2 ki~liG~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~-------   71 (161)
T cd01861           2 KLVFLGDQSVGKTSIIT-RFMYD--TFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIR-------   71 (161)
T ss_pred             EEEEECCCCCCHHHHHH-HHHcC--CCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-------
Confidence            69999999999999998 78773  3332222221               147799999986  344555566       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++++++|+.+..|+..+.+.. ..+.|+++++||+|+.+.+.++.++...+++..+++++++||+++
T Consensus        72 ---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (161)
T cd01861          72 ---DSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAG  147 (161)
T ss_pred             ---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence               8999999999999999999999999986543 247999999999999766778888899999998999999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQ  208 (250)
Q Consensus       196 ~~I~~lf~~l~~~  208 (250)
                      .|++++|+++.+.
T Consensus       148 ~~v~~l~~~i~~~  160 (161)
T cd01861         148 HNVKELFRKIASA  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.95  E-value=5.8e-27  Score=191.30  Aligned_cols=154  Identities=23%  Similarity=0.312  Sum_probs=122.9

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      ||+++|++|||||||++ +|++  ..+...+.++.              ..+.+||++|++  ..++..++.        
T Consensus         1 kv~vvG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~--------   69 (198)
T cd04147           1 RLVFMGAAGVGKTALIQ-RFLY--DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQ--------   69 (198)
T ss_pred             CEEEECCCCCCHHHHHH-HHHh--CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhh--------
Confidence            59999999999999998 7887  44544444443              156789999986  345556666        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-CCccCHHHHHHHHH-HhCCeEEEEecCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-RRQVTHSDGKKLAY-AWGVKFVETSVGL  194 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~evSa~~  194 (250)
                        ++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+ .+.+..++..+... .++.+++++||++
T Consensus        70 --~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  147 (198)
T cd04147          70 --NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKD  147 (198)
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCC
Confidence              8999999999999999999999999998776556899999999999855 45666666655543 4567899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      |.|++++|+++++.+.......+..
T Consensus       148 g~gv~~l~~~l~~~~~~~~~~~~~~  172 (198)
T cd04147         148 NENVLEVFKELLRQANLPYNLSPAL  172 (198)
T ss_pred             CCCHHHHHHHHHHHhhcccccchhh
Confidence            9999999999999887655555543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=99.95  E-value=5.2e-27  Score=184.09  Aligned_cols=144  Identities=22%  Similarity=0.360  Sum_probs=119.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+.  .+.+.+.++.               ..+.+||++|++  ..+++.++.      
T Consensus         1 ~ki~i~G~~~~GKStli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------   71 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVL-RYVEN--KFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYR------   71 (162)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHhC--CCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhc------
Confidence            479999999999999998 77763  3322221111               146789999986  566666776      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+.++.+... .++|+++|+||+|+...+.+..++..++++..+++++++||++
T Consensus        72 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  146 (162)
T cd04123          72 ----DADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT  146 (162)
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                89999999999999999999999999876543 4799999999999987777888888889999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQA  209 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i  209 (250)
                      +.|+.++|+++.+.+
T Consensus       147 ~~gi~~~~~~l~~~~  161 (162)
T cd04123         147 GKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04149 Arf6 Arf6 subfamily

Probab=99.95  E-value=1.5e-27  Score=189.83  Aligned_cols=144  Identities=11%  Similarity=0.027  Sum_probs=111.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||++ ++..+ .....++.+.++.       .+++|||+|++  +.+++.++.          ++
T Consensus         9 ~~kv~i~G~~~~GKTsli~-~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----------~a   77 (168)
T cd04149           9 EMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT----------GT   77 (168)
T ss_pred             ccEEEEECcCCCCHHHHHH-HHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------cC
Confidence            3679999999999999998 77652 1122334443332       57899999986  456677777          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-----hCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-----WGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~evSa~~~  195 (250)
                      |++|+|||++++.+|+++..|+.++.......++|++||+||+|+.+  .++.+++..++..     ..++++++||++|
T Consensus        78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            99999999999999999998888876543446789999999999864  3566777665431     2356899999999


Q ss_pred             CCHHHHHHHHHH
Q psy5810         196 YKTDELLVGIAR  207 (250)
Q Consensus       196 ~~I~~lf~~l~~  207 (250)
                      .|++++|++|.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.95  E-value=5.8e-27  Score=184.32  Aligned_cols=146  Identities=25%  Similarity=0.388  Sum_probs=120.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ ++..  ..+...+.++.              ..+.+|||+|++  ..++..+++       
T Consensus         1 ~ki~~~G~~~~GKTsl~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-------   70 (164)
T cd04139           1 YKVIVVGAGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHR-------   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhh-------
Confidence            379999999999999998 7876  44443333332              157789999986  344455555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         .++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+...+.....+...+++.++++++++||++|
T Consensus        71 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (164)
T cd04139          71 ---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTR  147 (164)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCC
Confidence               89999999999999999999999999877655568999999999999765567778888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .|+.++|+++++.+.
T Consensus       148 ~gi~~l~~~l~~~~~  162 (164)
T cd04139         148 QNVEKAFYDLVREIR  162 (164)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=7.8e-27  Score=183.59  Aligned_cols=145  Identities=24%  Similarity=0.299  Sum_probs=118.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      +||+++|++|||||||++ ++.+..  ....++.+.+.           ..+.+|||+|++  ..++..+++        
T Consensus         1 ~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~--------   71 (161)
T cd01863           1 LKILLIGDSGVGKSSLLL-RFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYR--------   71 (161)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhC--------
Confidence            479999999999999998 787731  11222222221           257899999986  344455566        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                        ++|++++|||++++.+|+.+..|+..+.+.....+.|+++||||+|+.. +.+..++...+++..+++++++||++|.
T Consensus        72 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  148 (161)
T cd01863          72 --GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRD  148 (161)
T ss_pred             --CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence              8999999999999999999999999998776667899999999999863 4667788899999999999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQ  208 (250)
Q Consensus       197 ~I~~lf~~l~~~  208 (250)
                      |++++|+++++.
T Consensus       149 gi~~~~~~~~~~  160 (161)
T cd01863         149 GVQQAFEELVEK  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=9e-27  Score=188.44  Aligned_cols=149  Identities=26%  Similarity=0.366  Sum_probs=117.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR--CLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~  115 (250)
                      .||+|+|++|||||||++ ++..  ..+.+.+.++..              .+.+|||+|++.  ...+.++.       
T Consensus         2 ~Ki~ivG~~g~GKStLl~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~-------   71 (187)
T cd04129           2 RKLVIVGDGACGKTSLLS-VFTL--GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYS-------   71 (187)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcC-------
Confidence            479999999999999998 7765  333333333221              467899999862  23334455       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC----------CCccCHHHHHHHHHHhC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER----------RRQVTHSDGKKLAYAWG  184 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~v~~~~~~~~~~~~~  184 (250)
                         ++|++++|||++++++|+.+. .|+..+.+.  .+++|+++||||+|+.+          .+.++.+++..+++.++
T Consensus        72 ---~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (187)
T cd04129          72 ---KAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG  146 (187)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence               899999999999999999996 699988654  25799999999999853          35677788999999998


Q ss_pred             C-eEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         185 V-KFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      . +|+||||++|.||+++|+++++.+...++.
T Consensus       147 ~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         147 AKKYMECSALTGEGVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             CcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence            5 799999999999999999999887655443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=99.95  E-value=3.4e-27  Score=187.85  Aligned_cols=147  Identities=14%  Similarity=0.041  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      ||+++|++|||||||++ ++.+.. ....+|.+..+.       .+.+|||+|+.  +.++..+++          ++|+
T Consensus         1 ~vvlvG~~~~GKTsl~~-~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~----------~ad~   69 (169)
T cd04158           1 RVVTLGLDGAGKTTILF-KLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYL----------NTQA   69 (169)
T ss_pred             CEEEECCCCCCHHHHHH-HHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhc----------cCCE
Confidence            58999999999999998 787731 112233332222       57799999986  445566677          8999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC------CeEEEEecCCCC
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG------VKFVETSVGLVY  196 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~------~~~~evSa~~~~  196 (250)
                      +++|||++++++|+++..|+.++.+.....+.|++||+||+|+.+  .++.+++.++++..+      +.++++||++|.
T Consensus        70 ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  147 (169)
T cd04158          70 VVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM  147 (169)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence            999999999999999999999997654455789999999999864  466777777664322      368899999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy5810         197 KTDELLVGIARQAGLN  212 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~  212 (250)
                      ||+++|++|++.+...
T Consensus       148 gv~~~f~~l~~~~~~~  163 (169)
T cd04158         148 GLYEGLDWLSRQLVAA  163 (169)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=2.1e-26  Score=183.68  Aligned_cols=143  Identities=22%  Similarity=0.358  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .||+++|++|||||||++ +|.+  ..|...+.+++.              .+.+|||+|++  ..++..++.       
T Consensus         2 ~ki~iiG~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------   71 (175)
T cd01870           2 KKLVIVGDGACGKTCLLI-VFSK--DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP-------   71 (175)
T ss_pred             cEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccC-------
Confidence            479999999999999997 8887  444433333321              56789999986  445555666       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~  182 (250)
                         ++|++++|||++++++|+.+. .|+..+.+.  ..+.|+++|+||+|+.+.            ..+...+++++++.
T Consensus        72 ---~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~  146 (175)
T cd01870          72 ---DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK  146 (175)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence               899999999999999999985 588887553  358999999999998532            34667888899988


Q ss_pred             hCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         183 WGV-KFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      .+. ++++|||++|.|++++|.++++.+
T Consensus       147 ~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         147 IGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             cCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            875 699999999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01862 Rab7 Rab7 subfamily

Probab=99.95  E-value=1.6e-26  Score=183.51  Aligned_cols=148  Identities=22%  Similarity=0.301  Sum_probs=119.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+.  .+..    +.+.++           ..+.+||++|++  ..++..+++      
T Consensus         1 ~ki~viG~~~~GKSsl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------   71 (172)
T cd01862           1 LKVIILGDSGVGKTSLMN-QYVNK--KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYR------   71 (172)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhcC--CCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhc------
Confidence            479999999999999998 78773  3332    222211           146689999986  445555666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVET  190 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~ev  190 (250)
                          ++|++|+|||++++++|+.+..|...+.+...   ..++|+++|+||+|+...+.++.++...+++..+ .+++++
T Consensus        72 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (172)
T cd01862          72 ----GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET  147 (172)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence                89999999999999999999999888765433   2379999999999997556677888888988887 789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ||++|.|++++|+++++.+.+.
T Consensus       148 Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         148 SAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=7.3e-27  Score=188.18  Aligned_cols=149  Identities=13%  Similarity=0.040  Sum_probs=111.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||++ ++..+ .....++.+.++.       .+.+||++|++  +.++..+|+          ++
T Consensus        17 ~~ki~ivG~~~~GKTsl~~-~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~----------~a   85 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NT   85 (181)
T ss_pred             ccEEEEECCCCCCHHHHHH-HHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------cC
Confidence            4679999999999999998 78652 1122344443332       57789999986  567778888          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-----CCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-----GVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~evSa~~~  195 (250)
                      |++|+|||++++++|+++..|+..+.......++|++|||||+|+.+.  +..++......-.     .+.++++||++|
T Consensus        86 ~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g  163 (181)
T PLN00223         86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            999999999999999999888888755434467999999999998653  3333333322111     123568999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy5810         196 YKTDELLVGIARQAGLN  212 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~  212 (250)
                      +||.++|++|+..+..+
T Consensus       164 ~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        164 EGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999999877643

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.94  E-value=1.2e-26  Score=187.03  Aligned_cols=155  Identities=15%  Similarity=0.057  Sum_probs=118.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCce------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDV------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      +.+||+++|++|||||||++ ++...  .+.   ++.+.+.            ..+.+|||+|++  ..++..+++    
T Consensus         2 ~~~kv~~vG~~~~GKTsli~-~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~----   74 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLY-RLKFN--EFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR----   74 (183)
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhcC--CcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc----
Confidence            46889999999999999998 77763  332   2222221            157789999986  456666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH--H----hCCe
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY--A----WGVK  186 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~----~~~~  186 (250)
                            ++|++++|||++++.+++.+..|+.++.+.....+.|+++|+||+|+.+  .+..++...+..  .    .+++
T Consensus        75 ------~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~  146 (183)
T cd04152          75 ------CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWH  146 (183)
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceE
Confidence                  8999999999999999999999999887665556899999999999864  344455554442  1    1246


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         187 FVETSVGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       187 ~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      ++++||++|.|++++|++|++.+.+.++.....
T Consensus       147 ~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~  179 (183)
T cd04152         147 VQPACAIIGEGLQEGLEKLYEMILKRRKMLRQQ  179 (183)
T ss_pred             EEEeecccCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            889999999999999999999987666655444

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0393|consensus

Probab=99.94  E-value=9.7e-27  Score=186.02  Aligned_cols=150  Identities=25%  Similarity=0.381  Sum_probs=130.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+|++|+|+.++|||+|+. .|..  +.|...|.|++.               .+.+|||+||+  ..+++..|.    
T Consensus         3 ~~~K~VvVGDga~GKT~ll~-~~t~--~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~----   75 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLI-SYTT--NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYP----   75 (198)
T ss_pred             eeeEEEEECCCCcCceEEEE-Eecc--CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCC----
Confidence            46889999999999999996 7777  688888888775               36689999997  457777888    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~  179 (250)
                            ++|+++++|++.+++||+++. .|+.++..+  .+++|+||||+|.||..            ...|+.+++..+
T Consensus        76 ------~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l  147 (198)
T KOG0393|consen   76 ------QTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL  147 (198)
T ss_pred             ------CCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence                  899999999999999999985 699999665  48999999999999953            236899999999


Q ss_pred             HHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         180 AYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       180 ~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +++.|. .|+||||++..|++++|+..++.++...+
T Consensus       148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            999995 59999999999999999999998886654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.94  E-value=2e-27  Score=187.46  Aligned_cols=143  Identities=14%  Similarity=0.086  Sum_probs=106.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      +||+++|++|||||||++ ++..+ ...+.++.+..+.       .+.+|||+|++  ..++..+|+          ++|
T Consensus         1 ~kv~~~G~~~~GKTsli~-~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~ad   69 (159)
T cd04150           1 MRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NTQ   69 (159)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------CCC
Confidence            479999999999999998 77552 1112333333222       57899999986  456677778          999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHH----HHhCCeEEEEecCCCC
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLA----YAWGVKFVETSVGLVY  196 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~~  196 (250)
                      ++|+|||++++.+|+.+.+|+..+.......++|++|++||+|+.+.  +..++. ..+.    ...++.++++||++|.
T Consensus        70 ~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~  147 (159)
T cd04150          70 GLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGD  147 (159)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence            99999999999999999998888765444457899999999998642  223332 2222    1223457899999999


Q ss_pred             CHHHHHHHHHH
Q psy5810         197 KTDELLVGIAR  207 (250)
Q Consensus       197 ~I~~lf~~l~~  207 (250)
                      ||+++|++|.+
T Consensus       148 gv~~~~~~l~~  158 (159)
T cd04150         148 GLYEGLDWLSN  158 (159)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.94  E-value=3.2e-27  Score=189.16  Aligned_cols=146  Identities=12%  Similarity=0.053  Sum_probs=109.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||++ ++..+ .....+|.+..+.       .+.+|||+|++  +.++..+++          ++
T Consensus        13 ~~ki~l~G~~~~GKTsL~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~----------~a   81 (175)
T smart00177       13 EMRILMVGLDAAGKTTILY-KLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYT----------NT   81 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHH-HHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC----------CC
Confidence            4789999999999999998 78652 1122333333222       57789999986  456677778          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~  195 (250)
                      |++|+|||++++++|+.+.+|+..+.+.....++|++|||||+|+.+.  ++.++..+..     +...+.++++||++|
T Consensus        82 d~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       82 QGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            999999999999999999999988865433467899999999998653  2333332222     122345779999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQA  209 (250)
Q Consensus       196 ~~I~~lf~~l~~~i  209 (250)
                      .|+.++|++|.+.+
T Consensus       160 ~gv~e~~~~l~~~~  173 (175)
T smart00177      160 DGLYEGLTWLSNNL  173 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=2.5e-27  Score=187.80  Aligned_cols=139  Identities=16%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      |+++|++|||||||++ +|.+.  .+...+.++++           .+.+|||+|++  +.++..+++          ++
T Consensus         2 i~ivG~~~vGKTsli~-~~~~~--~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~a   68 (164)
T cd04162           2 ILVLGLDGAGKTSLLH-SLSSE--RSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLS----------GS   68 (164)
T ss_pred             EEEECCCCCCHHHHHH-HHhcC--CCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHh----------hC
Confidence            8999999999999998 88873  34333434432           57899999986  566677777          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH----HHHHHHHHHhCCeEEEEecCC--
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH----SDGKKLAYAWGVKFVETSVGL--  194 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~evSa~~--  194 (250)
                      |++|+|||.+++.+|+.++.|+.++.+.  ..++|+++||||+|+...+.++.    .++..++++.++.++++||++  
T Consensus        69 d~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~  146 (164)
T cd04162          69 QGLIFVVDSADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG  146 (164)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence            9999999999999999999999988543  26899999999999976655432    234566777788899999998  


Q ss_pred             ----CCCHHHHHHHHHH
Q psy5810         195 ----VYKTDELLVGIAR  207 (250)
Q Consensus       195 ----~~~I~~lf~~l~~  207 (250)
                          ++||+++|..++.
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999999874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=6.1e-26  Score=182.01  Aligned_cols=149  Identities=26%  Similarity=0.380  Sum_probs=122.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .||+++|++|||||||++ ++.+  ..+...+.++.              ..+.+|||+|+.  ..++..++.       
T Consensus         2 ~kv~l~G~~g~GKTtl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------   71 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTV-QFVE--GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSI-------   71 (180)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHh-------
Confidence            479999999999999998 8887  33433333322              146789999986  344555555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         .++++++|||+++..+|+.+..|+..+.+.....+.|+++|+||+|+...+.+..++...+++.++++++++||+++
T Consensus        72 ---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (180)
T cd04137          72 ---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN  148 (180)
T ss_pred             ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence               89999999999999999999999888877655567899999999999766777777888888888999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q psy5810         196 YKTDELLVGIARQAGLNK  213 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~  213 (250)
                      .|+.++|.++.+.+....
T Consensus       149 ~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         149 ENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999998876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=3.9e-26  Score=184.08  Aligned_cols=149  Identities=12%  Similarity=0.058  Sum_probs=111.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||++ ++..+ .....+|.+..+.       .+.+|||+|++  +.++..+++          ++
T Consensus        17 ~~kv~lvG~~~vGKTsli~-~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~a   85 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILY-KLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQ----------NT   85 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHH-HHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------CC
Confidence            4679999999999999998 77552 1122344443322       57789999986  556777888          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~  195 (250)
                      |++|+|||++++++|+++..|+.++.+.....++|++||+||.|+.+  .++.++.....     ....+.++++||++|
T Consensus        86 d~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133         86 NGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            99999999999999999988888775543345789999999999864  22333332221     122245779999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy5810         196 YKTDELLVGIARQAGLN  212 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~  212 (250)
                      .|++++|++|.+.+.++
T Consensus       164 ~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        164 QGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999877654

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=1.4e-25  Score=177.82  Aligned_cols=145  Identities=19%  Similarity=0.284  Sum_probs=118.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..||+++|++|||||||++ ++..  ..+.+.++++++               .+.+||++|+.  ...+..++.     
T Consensus         7 ~~~v~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-----   78 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVR-RFTQ--GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR-----   78 (169)
T ss_pred             eeEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-----
Confidence            4779999999999999998 7876  333333333321               46789999975  344455566     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           .+|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+....+.+....+++++||+
T Consensus        79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  152 (169)
T cd04114          79 -----SANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAK  152 (169)
T ss_pred             -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence                 899999999999999999999999888654 34579999999999998777788777888888878889999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQA  209 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i  209 (250)
                      +|.|+.++|+++.+.+
T Consensus       153 ~~~gv~~l~~~i~~~~  168 (169)
T cd04114         153 ESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00876 Ras Ras family

Probab=99.94  E-value=6.6e-26  Score=177.45  Aligned_cols=143  Identities=28%  Similarity=0.457  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      ||+|+|++|||||||++ ++.+.  .+...+.++..              .+.+||++|++  ..+...++.        
T Consensus         1 ki~i~G~~~~GKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~--------   69 (160)
T cd00876           1 KVVVLGAGGVGKSAITI-QFVKG--TFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIR--------   69 (160)
T ss_pred             CEEEECCCCCCHHHHHH-HHHhC--CCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHh--------
Confidence            59999999999999998 77763  23333333321              57789999976  444445555        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                        ++|++++|||++++++++++..|...+.+.......|+++|+||+|+...+.++.+++.++++.++.+++++||+++.
T Consensus        70 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  147 (160)
T cd00876          70 --QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNI  147 (160)
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCC
Confidence              899999999999999999999999988776544689999999999997767788899999999999999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQ  208 (250)
Q Consensus       197 ~I~~lf~~l~~~  208 (250)
                      |++++|++|++.
T Consensus       148 ~i~~l~~~l~~~  159 (160)
T cd00876         148 NIDEVFKLLVRE  159 (160)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04154 Arl2 Arl2 subfamily

Probab=99.94  E-value=6.6e-26  Score=180.93  Aligned_cols=146  Identities=12%  Similarity=0.086  Sum_probs=111.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      ...+||+++|++|||||||++ ++.+. .....++.+..+.       .+.+|||+|++  +.++..+++          
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~----------   80 (173)
T cd04154          12 EREMRILILGLDNAGKTTILK-KLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFE----------   80 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHH-HHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------
Confidence            345679999999999999998 78764 1122233332222       56789999997  445566666          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVG  193 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~  193 (250)
                      ++|++++|||++++.+|+++..|+..+.+.....++|+++|+||+|+.+.  ...++...+..     ..+++++++||+
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04154          81 STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAV  158 (173)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCC
Confidence            89999999999999999999999888865444468999999999998653  24555555543     345789999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIAR  207 (250)
Q Consensus       194 ~~~~I~~lf~~l~~  207 (250)
                      +|.|++++|++++.
T Consensus       159 ~g~gi~~l~~~l~~  172 (173)
T cd04154         159 TGEGLLQGIDWLVD  172 (173)
T ss_pred             CCcCHHHHHHHHhc
Confidence            99999999999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=1.1e-25  Score=184.07  Aligned_cols=133  Identities=11%  Similarity=0.080  Sum_probs=107.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      +||+++|++|||||||++ +|++  ..|...+.++++                    .+++|||+|++  +.+++.+|+ 
T Consensus         1 vKIvlvGd~gVGKTSLi~-~~~~--~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr-   76 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVH-LICK--NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYN-   76 (202)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhC-
Confidence            479999999999999998 8887  444444433332                    46799999986  567778888 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh------------------CCCCCcEEEEeeCCCccCCCcc
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK------------------YIGEKAVILVANKADLERRRQV  171 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~------------------~~~~~piilv~nK~Dl~~~~~v  171 (250)
                               ++|++|+|||++++.||+++..|+.++.+..                  ...++|++|||||+|+.+++.+
T Consensus        77 ---------~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~  147 (202)
T cd04102          77 ---------QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES  147 (202)
T ss_pred             ---------cCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence                     9999999999999999999999999997642                  2347899999999999776766


Q ss_pred             CHHH----HHHHHHHhCCeEEEEecCCCCC
Q psy5810         172 THSD----GKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       172 ~~~~----~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      +.+.    ...+|++.+++.++.++.++..
T Consensus       148 ~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         148 SGNLVLTARGFVAEQGNAEEINLNCTNGRL  177 (202)
T ss_pred             chHHHhhHhhhHHHhcCCceEEEecCCccc
Confidence            6654    4457888999999999997654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=2.6e-25  Score=176.37  Aligned_cols=141  Identities=26%  Similarity=0.405  Sum_probs=112.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR--CLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|.+  ..+...+.++..              .+++|||+|++.  .+...+++       
T Consensus         1 iki~i~G~~~~GKSsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~-------   70 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLI-SYTT--GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYP-------   70 (171)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcC-------
Confidence            589999999999999998 7887  333222222221              578999999873  44555555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC-----------ccCHHHHHHHHHHh
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR-----------QVTHSDGKKLAYAW  183 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~v~~~~~~~~~~~~  183 (250)
                         .+|++++|||++++.+|.... .|+..+...  ..+.|+++||||+|+.+..           .+..+++.+++..+
T Consensus        71 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  145 (171)
T cd00157          71 ---NTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI  145 (171)
T ss_pred             ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh
Confidence               899999999999999998875 588877553  2489999999999985433           45678888999988


Q ss_pred             CC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810         184 GV-KFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       184 ~~-~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      ++ +|+++||++|.|++++|.++++
T Consensus       146 ~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         146 GAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHhh
Confidence            88 8999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=1.9e-25  Score=177.07  Aligned_cols=145  Identities=18%  Similarity=0.181  Sum_probs=107.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCcc--ccCCCccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQR--CLTPMPFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~  116 (250)
                      +||+++|++|||||||++ +|.+  +.|...+..+.             ..+.+|||+|++.  ..+..++.        
T Consensus         1 ~kv~ivG~~~vGKTsl~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--------   69 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIM-SLVS--EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIR--------   69 (166)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHh--CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcc--------
Confidence            479999999999999998 7877  44433322211             1577999999863  22333444        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHHHhC--CeEEEEe
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAYAWG--VKFVETS  191 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evS  191 (250)
                        ++|++++|||++++.+|+.+. .|+..+....  .+.|+++|+||+|+.+.+..  ..++...+++.++  .+++++|
T Consensus        70 --~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S  145 (166)
T cd01893          70 --KANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECS  145 (166)
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEec
Confidence              899999999999999999985 6888775532  48999999999999664432  1233444444443  3799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy5810         192 VGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~  211 (250)
                      |+++.|++++|+.+.+.+..
T Consensus       146 a~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         146 AKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             cccccCHHHHHHHHHHHhcC
Confidence            99999999999999887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252|consensus

Probab=99.93  E-value=1.8e-26  Score=178.60  Aligned_cols=152  Identities=17%  Similarity=0.253  Sum_probs=133.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .-+|++|+|..+|||||+|. +||.  +.|...|..+++               .+.+|||+||+  ..++..||+    
T Consensus        19 ~aiK~vivGng~VGKssmiq-ryCk--gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr----   91 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQ-RYCK--GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR----   91 (246)
T ss_pred             hhEEEEEECCCccchHHHHH-HHhc--cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc----
Confidence            34789999999999999995 9998  555555555544               34469999997  677889999    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +|.+.+|||+.+|+.||+.+..|.+++..  ....+|.++|-||+|+.++.+++..+++.+++..+..++.+|+
T Consensus        92 ------gaqa~vLVFSTTDr~SFea~~~w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSv  163 (246)
T KOG4252|consen   92 ------GAQASVLVFSTTDRYSFEATLEWYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSV  163 (246)
T ss_pred             ------cccceEEEEecccHHHHHHHHHHHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhh
Confidence                  99999999999999999999999999954  5689999999999999888999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      +...|+.++|.+|+..+.+...++
T Consensus       164 ked~NV~~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  164 KEDFNVMHVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988776663

>cd00154 Rab Rab family

Probab=99.93  E-value=5.5e-25  Score=171.22  Aligned_cols=141  Identities=27%  Similarity=0.362  Sum_probs=115.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ ++.+.  .+..    +.+.+..           .+.+||++|++  ..++..++.      
T Consensus         1 ~~i~~~G~~~~GKStl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~------   71 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLL-RFVDG--KFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYR------   71 (159)
T ss_pred             CeEEEECCCCCCHHHHHH-HHHhC--cCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhc------
Confidence            479999999999999998 78773  3332    2232222           56789999986  344455555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|+|++++++++.+..|+..+... .....|+++++||+|+.....+..++..+++...+.+++++||++
T Consensus        72 ----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  146 (159)
T cd00154          72 ----GAHGAILVYDITNRESFENLDKWLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKT  146 (159)
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCC
Confidence                899999999999999999999999988665 235799999999999965567788899999998899999999999


Q ss_pred             CCCHHHHHHHHH
Q psy5810         195 VYKTDELLVGIA  206 (250)
Q Consensus       195 ~~~I~~lf~~l~  206 (250)
                      +.|++++|.+++
T Consensus       147 ~~~i~~~~~~i~  158 (159)
T cd00154         147 GENVEELFQSLA  158 (159)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.92  E-value=1.4e-25  Score=178.35  Aligned_cols=144  Identities=14%  Similarity=0.056  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      +|+++|++|||||||++ ++.+. .....++.+.+..       .+.+||++|++  +.++..+++          ++|+
T Consensus         1 ~i~~~G~~~~GKTsl~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----------~a~~   69 (167)
T cd04161           1 TLLTVGLDNAGKTTLVS-ALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYA----------EAHG   69 (167)
T ss_pred             CEEEECCCCCCHHHHHH-HHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHc----------CCCE
Confidence            38999999999999998 78773 1223334333322       57799999986  566777777          8999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH-H---HHHHHHHHhC--CeEEEEecCCC-
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH-S---DGKKLAYAWG--VKFVETSVGLV-  195 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~---~~~~~~~~~~--~~~~evSa~~~-  195 (250)
                      +|+|||++++.+|+++..|+..+.+.....++|+++|+||+|+++.+.... .   ....++++.+  +.+++|||++| 
T Consensus        70 ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          70 LVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             EEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999999999999999999987654446899999999999976442111 1   1223343333  45788999998 


Q ss_pred             -----CCHHHHHHHHHH
Q psy5810         196 -----YKTDELLVGIAR  207 (250)
Q Consensus       196 -----~~I~~lf~~l~~  207 (250)
                           .|+.+.|+||..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=2e-24  Score=178.42  Aligned_cols=150  Identities=17%  Similarity=0.237  Sum_probs=118.3

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      ....+||+++|++|||||||++ ++..  ..+...+.+++               ..+.+|||+|++  ..++..++.  
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~--   80 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVK-RHLT--GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI--   80 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc--
Confidence            3344789999999999999997 6766  33333333332               167789999986  455566666  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                              +++++++|||++++.+|..+..|+..+...  ..++|++++|||+|+.+ +.+..+ ...+++..++.|+++
T Consensus        81 --------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~  148 (215)
T PTZ00132         81 --------KGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDI  148 (215)
T ss_pred             --------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEE
Confidence                    899999999999999999999999998654  35789999999999864 334433 346777888999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ||++|.|+++.|.++++.+.....
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhccc
Confidence            999999999999999998876544

>cd04157 Arl6 Arl6 subfamily

Probab=99.92  E-value=1.9e-25  Score=175.61  Aligned_cols=142  Identities=15%  Similarity=0.043  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc---ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV---ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~---~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      +|+++|++|||||||++ ++.+..   ..+.++.+.+..       .+.+|||+|++  +.++..+++          ++
T Consensus         1 ~i~~vG~~~~GKTsl~~-~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----------~~   69 (162)
T cd04157           1 NILVVGLDNSGKTTIIN-QLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYK----------NI   69 (162)
T ss_pred             CEEEECCCCCCHHHHHH-HHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHc----------cC
Confidence            38999999999999998 788741   123344443332       57899999986  456666777          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVG  193 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~  193 (250)
                      |++|+|+|++++.+|+.+..|+..+.+...  ..++|+++|+||+|+.+..  ..++.....     ....++++++||+
T Consensus        70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~  147 (162)
T cd04157          70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNAL  147 (162)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCC
Confidence            999999999999999999999988865422  2579999999999986532  222222211     1123458999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIAR  207 (250)
Q Consensus       194 ~~~~I~~lf~~l~~  207 (250)
                      +|.|++++|++|.+
T Consensus       148 ~g~gv~~~~~~l~~  161 (162)
T cd04157         148 TGEGLDEGVQWLQA  161 (162)
T ss_pred             CCCchHHHHHHHhc
Confidence            99999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.92  E-value=6.3e-25  Score=177.66  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=113.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +..||+++|++|||||||++ ++.+. ...+.++.+++..       .+.+||++|++  +.++..++.          +
T Consensus        18 ~~~ki~ilG~~~~GKStLi~-~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~   86 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLH-MLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFP----------E   86 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------c
Confidence            35669999999999999998 77763 1123334444433       56789999986  444555666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH----------------h
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA----------------W  183 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----------------~  183 (250)
                      +|++++|+|+++..+|+....|+.++.+.....+.|+++++||+|+..  .++.++..++...                .
T Consensus        87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T cd00879          87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIR  164 (190)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCce
Confidence            999999999999999999999999887654456799999999999854  5667777766642                2


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      .+++++|||++|.|++++|++|++.
T Consensus       165 ~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         165 PIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEEEEEeEecCCCChHHHHHHHHhh
Confidence            2468999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.92  E-value=7.2e-25  Score=175.26  Aligned_cols=144  Identities=16%  Similarity=0.111  Sum_probs=108.8

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      ..||+++|++|||||||++ ++..+ .....++.+.++.       .+.+|||+|++  ...+..+++          ++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~~   83 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILY-QFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT----------NT   83 (174)
T ss_pred             ccEEEEECCCCCCHHHHHH-HHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh----------cC
Confidence            4579999999999999998 78763 1112333333332       57889999986  445566676          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHH----HHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLA----YAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~  195 (250)
                      |++++|+|++++++|..+..|+..+.+.....++|+++++||+|+.+  .++.++. ..+.    +..+++++++||++|
T Consensus        84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g  161 (174)
T cd04153          84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTG  161 (174)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence            99999999999999999988888886654446799999999999864  2334432 2222    234567999999999


Q ss_pred             CCHHHHHHHHHH
Q psy5810         196 YKTDELLVGIAR  207 (250)
Q Consensus       196 ~~I~~lf~~l~~  207 (250)
                      .||+++|++|++
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.92  E-value=6.3e-25  Score=172.53  Aligned_cols=142  Identities=15%  Similarity=0.074  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      +|+++|++|||||||++ +|.+... ...++.+.++.        .+.+|||+|++  ...+..++.          ++|
T Consensus         1 ~i~i~G~~~~GKTsl~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~----------~~~   69 (160)
T cd04156           1 QVLLLGLDSAGKSTLLY-KLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLE----------NTD   69 (160)
T ss_pred             CEEEEcCCCCCHHHHHH-HHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhc----------cCC
Confidence            48999999999999998 7877411 11223322221        57789999986  344555666          899


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH------HHHHhCCeEEEEecCCC
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK------LAYAWGVKFVETSVGLV  195 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~------~~~~~~~~~~evSa~~~  195 (250)
                      ++|+|+|.+++.+|+.+..|+.++.+.....+.|+++|+||+|+...  ...++...      ++...+++++++||++|
T Consensus        70 ~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (160)
T cd04156          70 GLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTG  147 (160)
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence            99999999999999999999998876544468999999999998542  22333322      22223457999999999


Q ss_pred             CCHHHHHHHHHH
Q psy5810         196 YKTDELLVGIAR  207 (250)
Q Consensus       196 ~~I~~lf~~l~~  207 (250)
                      .|++++|++|++
T Consensus       148 ~gv~~~~~~i~~  159 (160)
T cd04156         148 EGLAEAFRKLAS  159 (160)
T ss_pred             CChHHHHHHHhc
Confidence            999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.92  E-value=1e-24  Score=171.41  Aligned_cols=142  Identities=14%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      ||+++|++|||||||++ ++..+ .....++.+.++.       .+.+|||+|++  +.++..++.          ++|+
T Consensus         1 kv~lvG~~~~GKTsl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~~~   69 (158)
T cd04151           1 RILILGLDNAGKTTILY-RLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYS----------NTDA   69 (158)
T ss_pred             CEEEECCCCCCHHHHHH-HHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------CCCE
Confidence            58999999999999998 77653 1112233333321       67899999986  555666777          8999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HH----HHhCCeEEEEecCCCCC
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LA----YAWGVKFVETSVGLVYK  197 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~evSa~~~~~  197 (250)
                      +++|+|++++.++....+|+..+.+.....+.|+++|+||+|+.+..  ...+... +.    ...+++++++||++|.|
T Consensus        70 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd04151          70 IIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEG  147 (158)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence            99999999999998877777665443334579999999999986432  2232222 11    11235699999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         198 TDELLVGIAR  207 (250)
Q Consensus       198 I~~lf~~l~~  207 (250)
                      +.++|++|++
T Consensus       148 i~~l~~~l~~  157 (158)
T cd04151         148 LDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.92  E-value=2.1e-24  Score=170.76  Aligned_cols=142  Identities=12%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc--------ccccccccCce-------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV--------ENFVQTYHPDV-------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~--------~~~~~~~~~~~-------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +|+++|++|||||||++ ++....        ....++.+..+       ..+.+|||+|++  ..++..++.       
T Consensus         1 ~i~~vG~~~~GKstLi~-~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-------   72 (167)
T cd04160           1 SVLILGLDNAGKTTFLE-QLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA-------   72 (167)
T ss_pred             CEEEEecCCCCHHHHHH-HHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC-------
Confidence            48999999999999998 676421        11222323222       267899999986  344445555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-------hCCeEE
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-------WGVKFV  188 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~  188 (250)
                         ++|++++|+|.+++++++.+..|+..+.+.....++|+++++||+|+.+  .+..++..++.+.       .+++++
T Consensus        73 ---~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (167)
T cd04160          73 ---ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVL  147 (167)
T ss_pred             ---CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEE
Confidence               8999999999999999999999999887655556899999999999865  3444555555433       245799


Q ss_pred             EEecCCCCCHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~  207 (250)
                      ++||++|.|+++++++|++
T Consensus       148 ~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         148 PVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EeeCCCCcCHHHHHHHHhc
Confidence            9999999999999999974

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.91  E-value=1.9e-24  Score=169.61  Aligned_cols=142  Identities=14%  Similarity=0.041  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      ||+++|.+|||||||++ ++++.. ....++.+.+..       .+.+||++|++  ..++..++.          ++|+
T Consensus         1 ki~iiG~~~~GKssli~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----------~~~~   69 (158)
T cd00878           1 RILILGLDGAGKTTILY-KLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYE----------NTNG   69 (158)
T ss_pred             CEEEEcCCCCCHHHHHH-HHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhc----------cCCE
Confidence            59999999999999998 787742 223334444332       67899999986  445555666          8999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGLVYK  197 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~~~  197 (250)
                      +++|||++++++|..+..|+..+.+.....+.|+++|+||+|+....  +.++..+...     ...++++++||++|.|
T Consensus        70 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  147 (158)
T cd00878          70 IIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDG  147 (158)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence            99999999999999999999888765545689999999999986533  3334433322     2346799999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         198 TDELLVGIAR  207 (250)
Q Consensus       198 I~~lf~~l~~  207 (250)
                      +.++|++|..
T Consensus       148 v~~~~~~l~~  157 (158)
T cd00878         148 LDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.91  E-value=5.4e-24  Score=171.83  Aligned_cols=146  Identities=14%  Similarity=0.085  Sum_probs=112.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|.+|||||||++ ++.+.. ....++.+++.+       .+.+||++|+.  +.++..++.          +
T Consensus        16 ~~~~i~ivG~~~~GKTsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~----------~   84 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLH-MLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP----------E   84 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHH-HHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------C
Confidence            34669999999999999998 787731 122345666554       46789999986  456677777          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH------------hCCeE
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA------------WGVKF  187 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~  187 (250)
                      +|++++|+|++++.+|.....|+.++.+.....++|+++|+||+|+..  .++.++..+...-            ..+.+
T Consensus        85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEE
Confidence            999999999999999999998988886544446799999999999854  4566665544311            12348


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q psy5810         188 VETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~  208 (250)
                      ++|||++|.|++++++||.+.
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=99.90  E-value=3.5e-23  Score=165.96  Aligned_cols=114  Identities=24%  Similarity=0.310  Sum_probs=101.7

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .+.+|||+|++  +.+++.+++          +||++|+|||+++++||+.+..|+..+.+.. ..++|++|||||+|+.
T Consensus        30 ~l~iwDt~G~e~~~~~~~~~~~----------~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~   98 (176)
T PTZ00099         30 RLQLWDTAGQERFRSLIPSYIR----------DSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLG   98 (176)
T ss_pred             EEEEEECCChHHhhhccHHHhC----------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence            67799999987  567778888          9999999999999999999999999997653 3578999999999997


Q ss_pred             CCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       167 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +.+.++.+++..+++.+++.|+|+||++|.||.++|.+|++.+.+..
T Consensus        99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            77788999999999999999999999999999999999999886543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=3.1e-23  Score=166.12  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=121.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      ..+.+||+++|..|||||||++ ++... .....+|.|..++       .+.+||.+|+.  +.+|+.||.         
T Consensus        11 ~~~~~~ililGl~~sGKTtll~-~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~---------   80 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLN-RLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ---------   80 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHH-HHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT---------
T ss_pred             cCcEEEEEEECCCccchHHHHH-HhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc---------
Confidence            3566789999999999999998 77653 2345566666665       56789999985  789999999         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH------HhCCeEEEEe
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY------AWGVKFVETS  191 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~evS  191 (250)
                       ++|++|+|+|.++++.+.+..+.+.++.......++|+++++||+|+.+  .++.++......      ...+.++.||
T Consensus        81 -~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~s  157 (175)
T PF00025_consen   81 -NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCS  157 (175)
T ss_dssp             -TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred             -ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeee
Confidence             8999999999999999999999888887765667899999999999865  345555554432      2345589999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQA  209 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i  209 (250)
                      |.+|+|+.+.|+||.+++
T Consensus       158 a~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  158 AKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTTTBTHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHhcC
Confidence            999999999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.90  E-value=5e-24  Score=164.45  Aligned_cols=139  Identities=16%  Similarity=0.067  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER  132 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~  132 (250)
                      ||+++|++|||||||++ +|.+......++.+.... ..+|||+|++.. ...+++.....   ++++|++++|||++++
T Consensus         2 kv~liG~~~vGKSsL~~-~l~~~~~~~~~t~~~~~~-~~~iDt~G~~~~-~~~~~~~~~~~---~~~ad~vilv~d~~~~   75 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQ-ALQGEEILYKKTQAVEYN-DGAIDTPGEYVE-NRRLYSALIVT---AADADVIALVQSATDP   75 (142)
T ss_pred             eEEEECCCCCCHHHHHH-HHcCCccccccceeEEEc-CeeecCchhhhh-hHHHHHHHHHH---hhcCCEEEEEecCCCC
Confidence            69999999999999998 888853333333332222 268999998411 11122222111   2289999999999999


Q ss_pred             HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHH
Q psy5810         133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~  206 (250)
                      .++.. ..|....       ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+++.
T Consensus        76 ~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        76 ESRFP-PGFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CcCCC-hhHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            99865 3454422       239999999999864 34566777888888776 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN00023 GTP-binding protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=178.81  Aligned_cols=127  Identities=15%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCce------------------------eEEEEEeCCCCc--
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDV------------------------FFIVYSDTNHTQ--   99 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~------------------------~~i~i~Dt~g~~--   99 (250)
                      ....+||+|+|+.|||||||++ +|.++  .....+|++.++                        ..++||||+|++  
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~-rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVH-LIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHH-HHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            4555789999999999999997 88873  112233333321                        126799999986  


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-----------CCCCcEEEEeeCCCccCC
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-----------IGEKAVILVANKADLERR  168 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~  168 (250)
                      +.+++.+|+          +++++|+|||++++.||+++..|+.++.+...           ..++|++|||||+||...
T Consensus        97 rsL~~~yyr----------~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         97 KDCRSLFYS----------QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhHHhcc----------CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            678888999          99999999999999999999999999976531           135899999999999654


Q ss_pred             C---c---cCHHHHHHHHHHhCC
Q psy5810         169 R---Q---VTHSDGKKLAYAWGV  185 (250)
Q Consensus       169 ~---~---v~~~~~~~~~~~~~~  185 (250)
                      +   .   +..+++++||+++++
T Consensus       167 ~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        167 EGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             ccccccccccHHHHHHHHHHcCC
Confidence            2   3   368899999999884

>KOG3883|consensus

Probab=99.90  E-value=3.7e-23  Score=156.28  Aligned_cols=159  Identities=19%  Similarity=0.155  Sum_probs=135.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc---cccCCCcccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ---RCLTPMPFCSQV  111 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~---~~~~~~~~~~~~  111 (250)
                      +..||+++|..+||||+++. +++.+.......+.+|++               .+.++||+|..   ..+...|+.   
T Consensus         8 k~~kVvVcG~k~VGKTaile-Ql~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q---   83 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILE-QLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ---   83 (198)
T ss_pred             cceEEEEECCccccHHHHHH-HHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc---
Confidence            44679999999999999997 676654555666667666               45689999953   456677777   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             -+|++++|||..|++||+.+...-++|.+..+...+||+++|||+|+.+.+.++.+.+..||+...+..+|++
T Consensus        84 -------~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVt  156 (198)
T KOG3883|consen   84 -------FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVT  156 (198)
T ss_pred             -------cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEE
Confidence                   7999999999999999999887777777777778899999999999988899999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      |.+...+.+.|..+...+......+...
T Consensus       157 a~dR~sL~epf~~l~~rl~~pqskS~Fp  184 (198)
T KOG3883|consen  157 AMDRPSLYEPFTYLASRLHQPQSKSTFP  184 (198)
T ss_pred             eccchhhhhHHHHHHHhccCCcccccCc
Confidence            9999999999999999887766555544

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.89  E-value=8.3e-23  Score=161.69  Aligned_cols=150  Identities=13%  Similarity=0.062  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccc----ccccCce-------eEEEEEeCCCCcc-ccCCCc-cc-cccccccccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-------FFIVYSDTNHTQR-CLTPMP-FC-SQVENFVQTY  118 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-------~~i~i~Dt~g~~~-~~~~~~-~~-~~~~~~~~~~  118 (250)
                      +|+++|++|||||||++ ++.+......    .+.....       ..+.+|||+|+.. ...... +. .......  .
T Consensus         2 ~i~~~G~~~~GKssli~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~--~   78 (168)
T cd01897           2 TLVIAGYPNVGKSSLVN-KLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA--H   78 (168)
T ss_pred             eEEEEcCCCCCHHHHHH-HHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHH--h
Confidence            59999999999999998 8887422111    1222221       2678999999852 111110 00 0000000  1


Q ss_pred             CCcEEEEEEeCCCHHhH--HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         119 HPDVFVIVYSVIERKTF--KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      .+|++++|+|++++.++  +....|+..+.+.  ..+.|+++|+||+|+.+.+.+..  ..++....+++++++||++|.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence            36899999999987654  6666788887543  24799999999999865444332  455556567889999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQA  209 (250)
Q Consensus       197 ~I~~lf~~l~~~i  209 (250)
                      |++++|+++.+.+
T Consensus       155 gi~~l~~~l~~~~  167 (168)
T cd01897         155 GVDEVKNKACELL  167 (168)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=4.4e-23  Score=160.61  Aligned_cols=139  Identities=15%  Similarity=0.109  Sum_probs=104.2

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      |+++|++|||||||++ ++.+  ..+...+.++.+           .+.+||++|+.  +.++..++.          ++
T Consensus         2 i~i~G~~~~GKssl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----------~~   68 (159)
T cd04159           2 ITLVGLQNSGKTTLVN-VIAG--GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCR----------GV   68 (159)
T ss_pred             EEEEcCCCCCHHHHHH-HHcc--CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHh----------cC
Confidence            8999999999999998 8887  333333333321           57799999985  444555666          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~~~  195 (250)
                      |++++|+|++++.++.....|+..+.+.....++|+++|+||+|+.+...  ..+....     ....+++++++||++|
T Consensus        69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccC
Confidence            99999999999999999888888876544446789999999999865332  2222111     1123467899999999


Q ss_pred             CCHHHHHHHHHH
Q psy5810         196 YKTDELLVGIAR  207 (250)
Q Consensus       196 ~~I~~lf~~l~~  207 (250)
                      .|+.++|+++++
T Consensus       147 ~gi~~l~~~l~~  158 (159)
T cd04159         147 TNIDIVLDWLIK  158 (159)
T ss_pred             CChHHHHHHHhh
Confidence            999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073|consensus

Probab=99.89  E-value=3.7e-22  Score=152.57  Aligned_cols=151  Identities=14%  Similarity=0.102  Sum_probs=124.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      +.+.++|+|+|..|+|||++++ +|.+. .+...++.+..+.       .+.+||.+||.  +++|+.||.         
T Consensus        13 kerE~riLiLGLdNsGKTti~~-kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfe---------   82 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVK-KLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFE---------   82 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHH-HhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhh---------
Confidence            3457889999999999999998 78875 3334455555443       67899999996  899999999         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHH------HHHHHHHhCCeEEEEe
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSD------GKKLAYAWGVKFVETS  191 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~------~~~~~~~~~~~~~evS  191 (250)
                       .+|++|+|+|.+|+..|++....+.++.........|+++++||.|+..  .++.++      ...+++...++.+-||
T Consensus        83 -stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs  159 (185)
T KOG0073|consen   83 -STDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCS  159 (185)
T ss_pred             -ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEe
Confidence             8999999999999999999988888877665556789999999999973  333333      2345577889999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy5810         192 VGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~  211 (250)
                      |.+|+++.+.+.||...+..
T Consensus       160 ~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  160 AVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence            99999999999999998876

>cd01898 Obg Obg subfamily

Probab=99.88  E-value=2e-22  Score=159.65  Aligned_cols=146  Identities=19%  Similarity=0.105  Sum_probs=104.6

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCce--------eEEEEEeCCCCccc------cCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDV--------FFIVYSDTNHTQRC------LTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~--------~~i~i~Dt~g~~~~------~~~~~~~~~~~~~~  115 (250)
                      |+++|++|||||||++ ++.+....    ...++.+.+        ..+.+|||+|+...      +...+++       
T Consensus         3 v~ivG~~~~GKStl~~-~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-------   74 (170)
T cd01898           3 VGLVGLPNAGKSTLLS-AISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLR-------   74 (170)
T ss_pred             eEEECCCCCCHHHHHH-HHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHH-------
Confidence            8999999999999998 78764211    112222222        26789999997421      1111111       


Q ss_pred             ccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCeEEEEec
Q psy5810         116 QTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVKFVETSV  192 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa  192 (250)
                      .+..+|++++|+|++++ ++++.+..|++++..... ....|+++|+||+|+.+...+ .+....+... .+.+++++||
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa  153 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISA  153 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEec
Confidence            11269999999999999 899999999998865422 246899999999998654443 3344445555 3678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      +++.|+.++|+++.+.
T Consensus       154 ~~~~gi~~l~~~i~~~  169 (170)
T cd01898         154 LTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0070|consensus

Probab=99.88  E-value=6.8e-22  Score=154.63  Aligned_cols=150  Identities=13%  Similarity=0.050  Sum_probs=122.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      .+.++|+++|..|+||||+++ ++-- +.....+|+|..++       .+.+||.+||+  +.+|..||.          
T Consensus        15 ~~e~~IlmlGLD~AGKTTILy-kLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~----------   83 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILY-KLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQ----------   83 (181)
T ss_pred             cceEEEEEEeccCCCceeeeE-eeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhcc----------
Confidence            345669999999999999998 5544 34445777777777       56689999997  789999999          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVG  193 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~  193 (250)
                      +.+++|+|.|.+|++-+.+.+..+..+.......+.|+++.+||.|+++.  .+..+..+.     .....+.+..|+|.
T Consensus        84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~  161 (181)
T KOG0070|consen   84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAI  161 (181)
T ss_pred             CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeecccc
Confidence            99999999999999999999988888877766678999999999999763  333333332     23345678899999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|+|+.|.++|+...+..
T Consensus       162 ~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  162 SGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             ccccHHHHHHHHHHHHhc
Confidence            999999999999988764

>cd04155 Arl3 Arl3 subfamily

Probab=99.88  E-value=7.4e-22  Score=157.08  Aligned_cols=143  Identities=15%  Similarity=0.112  Sum_probs=104.6

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      ...++|+++|++|||||||++ ++.+... ...++.+.++.       .+.+||++|+.  ...+..++.          
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~-~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~----------   80 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILK-QLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFE----------   80 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHH-HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------
Confidence            345779999999999999998 7877311 12233332222       56789999985  334445555          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--------CeEEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--------VKFVET  190 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~ev  190 (250)
                      ++|++++|+|+++..+|.....|+..+.+.....++|+++++||+|+.+..  ..+   .+.+..+        ++++++
T Consensus        81 ~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          81 NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEe
Confidence            899999999999999999988888877655444679999999999985422  222   2233333        247899


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIAR  207 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~  207 (250)
                      ||++|.|++++|+||++
T Consensus       156 Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         156 SAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.3e-21  Score=171.24  Aligned_cols=150  Identities=17%  Similarity=0.059  Sum_probs=112.4

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~  115 (250)
                      |+|||.+|||||||++ ++.+....    ..+|..|.++        .+.+||++|..+      .+...+++       
T Consensus       161 VglVG~PNaGKSTLln-~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr-------  232 (335)
T PRK12299        161 VGLVGLPNAGKSTLIS-AVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK-------  232 (335)
T ss_pred             EEEEcCCCCCHHHHHH-HHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH-------
Confidence            9999999999999998 78764211    1234444443        578999999742      12222222       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                      .+..++++++|+|+++.++++++..|..++..+.. ..+.|+++|+||+|+.+...+..++...+++..+++++++||++
T Consensus       233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt  312 (335)
T PRK12299        233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT  312 (335)
T ss_pred             HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            11268999999999998899999999999976532 24789999999999865444444455556666778899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      +.||++++++|.+.+.+
T Consensus       313 g~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        313 GEGLDELLRALWELLEE  329 (335)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987754

>cd01878 HflX HflX subfamily

Probab=99.87  E-value=6.7e-22  Score=161.90  Aligned_cols=151  Identities=19%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccccCCCccccccccccccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~  118 (250)
                      .++|+|+|++|||||||++ ++.+....    ..++..+...        .+.+|||+|...................+.
T Consensus        41 ~~~I~iiG~~g~GKStLl~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~  119 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFN-ALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA  119 (204)
T ss_pred             CCeEEEECCCCCCHHHHHH-HHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence            3579999999999999998 78774211    1122222211        677899999753222211111111111123


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|++++|+|.+++.++..+..|...+... ...++|+++|+||+|+.+...+.     .+....+.+++++||+++.|+
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi  193 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGL  193 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCH
Confidence            799999999999999998887777766443 34578999999999986533221     344555678999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         199 DELLVGIARQ  208 (250)
Q Consensus       199 ~~lf~~l~~~  208 (250)
                      .+++++|...
T Consensus       194 ~~l~~~L~~~  203 (204)
T cd01878         194 DELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=7.5e-22  Score=173.50  Aligned_cols=179  Identities=13%  Similarity=0.056  Sum_probs=120.7

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCce-----------eEEEEEeCCCCccccCCCccccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~  116 (250)
                      .+.+||+++|++|||||||+| +|++.... ..+.++.|.           ..+.+|||+|+...............+..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin-~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLN-RIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHH-HHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            456789999999999999999 78874211 112222221           16779999998532211111111111222


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVG  193 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~  193 (250)
                      +.++|++++|+|.++  +|+.+. .|+..+..    .+.|.++|+||+|+.+.   ...+..+++...+  ..++++||+
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            338999999999765  455554 35555533    34677889999998642   2445666665554  569999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810         194 LVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK  237 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (250)
                      +|.|++++|++|...+.......+....+....+.++.++.|++
T Consensus       200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~  243 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQ  243 (339)
T ss_pred             CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999988877777766666667777777777765

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.87  E-value=3.7e-21  Score=158.89  Aligned_cols=152  Identities=20%  Similarity=0.198  Sum_probs=117.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|+.|||||||++ +|..  ..+...+.+++.               ++.+|||+||+  +.+++.|+.      
T Consensus         6 ~kivv~G~~g~GKTtl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~------   76 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLN-RLVG--DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR------   76 (219)
T ss_pred             EEEEEEcCCCccHHHHHH-HHhc--CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhc------
Confidence            789999999999999998 8888  666665655543               37899999997  678889999      


Q ss_pred             cccCCCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHHHHH
Q psy5810         115 VQTYHPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKKLAY  181 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~  181 (250)
                          +++++++|||.++ ..+++....|...+.... ....|+++++||+|+...+            .+........+.
T Consensus        77 ----~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (219)
T COG1100          77 ----GANGILIVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV  151 (219)
T ss_pred             ----CCCEEEEEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh
Confidence                9999999999999 556666788999886542 2579999999999997643            333333333332


Q ss_pred             Hh---CCeEEEEecC--CCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         182 AW---GVKFVETSVG--LVYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       182 ~~---~~~~~evSa~--~~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      ..   ...++++|++  .+.++.++|..++..+........
T Consensus       152 ~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         152 LPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             hhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            22   3348999999  999999999999998876544433

>cd01890 LepA LepA subfamily

Probab=99.86  E-value=3.4e-21  Score=154.04  Aligned_cols=139  Identities=12%  Similarity=0.149  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc---------ccccc------ccCc----------------eeEEEEEeCCCCcc-
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE---------NFVQT------YHPD----------------VFFIVYSDTNHTQR-  100 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~---------~~~~~------~~~~----------------~~~i~i~Dt~g~~~-  100 (250)
                      +|+++|++|||||||++ +|++...         .+.++      .+.+                -..+.+|||+|+++ 
T Consensus         2 ni~~vG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           2 NFSIIAHIDHGKSTLAD-RLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             cEEEEeecCCCHHHHHH-HHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            38999999999999998 7765211         01110      0111                12467999999863 


Q ss_pred             -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                       ..+..+++          ++|++|+|||+++..+++.+..|.... .    .++|+++|+||+|+.+.+  ......++
T Consensus        81 ~~~~~~~~~----------~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~  143 (179)
T cd01890          81 SYEVSRSLA----------ACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQQI  143 (179)
T ss_pred             HHHHHHHHH----------hcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHHHH
Confidence             33444555          899999999999987777777665432 1    468999999999986422  22334566


Q ss_pred             HHHhCCe---EEEEecCCCCCHHHHHHHHHHHH
Q psy5810         180 AYAWGVK---FVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ++.++++   ++++||++|.|++++|+++.+.+
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            6666664   89999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.85  E-value=2.7e-21  Score=152.40  Aligned_cols=145  Identities=13%  Similarity=0.011  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER  132 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~  132 (250)
                      +|+++|.+|||||||++ ++.+.......+.+..+....+|||||++... +..++.+...   ++++|++++|+|.++.
T Consensus         3 ~i~~iG~~~~GKstl~~-~l~~~~~~~~~~~~v~~~~~~~iDtpG~~~~~-~~~~~~~~~~---~~~ad~il~v~d~~~~   77 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFN-ALQGNYTLARKTQAVEFNDKGDIDTPGEYFSH-PRWYHALITT---LQDVDMLIYVHGANDP   77 (158)
T ss_pred             EEEEECCCCCCHHHHHH-HHcCCCccCccceEEEECCCCcccCCccccCC-HHHHHHHHHH---HhcCCEEEEEEeCCCc
Confidence            59999999999999998 67763211112222112122369999985222 1122212222   2289999999999998


Q ss_pred             HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC--eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV--KFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      .++  +..|+..+     ..+.|+++++||+|+.+   ...+...+++++.++  +++++||++|.|++++|+++.+.+.
T Consensus        78 ~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~  147 (158)
T PRK15467         78 ESR--LPAGLLDI-----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK  147 (158)
T ss_pred             ccc--cCHHHHhc-----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence            876  33465554     13678999999999854   345667788888875  8999999999999999999988765


Q ss_pred             hh
Q psy5810         211 LN  212 (250)
Q Consensus       211 ~~  212 (250)
                      +.
T Consensus       148 ~~  149 (158)
T PRK15467        148 QE  149 (158)
T ss_pred             hh
Confidence            44

>TIGR00436 era GTP-binding protein Era

Probab=99.85  E-value=3.1e-21  Score=164.86  Aligned_cols=176  Identities=16%  Similarity=0.001  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccccc-ccCc---e--------eEEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPD---V--------FFIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~---~--------~~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~  119 (250)
                      +|+++|.+|||||||+| ++++......+. .+.|   +        ..+.+|||||....... ....+.+ ....+.+
T Consensus         2 ~V~liG~pnvGKSTLln-~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~-l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLN-QLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS-LNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch-HHHHHHHHHHHHHhh
Confidence            59999999999999999 888742111111 1111   1        15778999998633111 1111111 1112238


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I  198 (250)
                      +|++++|+|.++..+++  ..++..+..    .+.|+++|+||+|+.+... ..+....++...+. +++++||++|.|+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNT  152 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            99999999999987764  334444422    4789999999999854222 22334445554454 6999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810         199 DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK  237 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (250)
                      +++++++.+.+.......+....+.......+.++.|++
T Consensus       153 ~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~  191 (270)
T TIGR00436       153 SFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK  191 (270)
T ss_pred             HHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence            999999999887665555544444445555566665554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK04213 GTP-binding protein; Provisional

Probab=99.84  E-value=3.7e-21  Score=157.11  Aligned_cols=147  Identities=12%  Similarity=-0.038  Sum_probs=92.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccc--cCce-------eEEEEEeCCCCc-------------cccCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--HPDV-------FFIVYSDTNHTQ-------------RCLTPMPF  107 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--~~~~-------~~i~i~Dt~g~~-------------~~~~~~~~  107 (250)
                      ..++|+++|++|||||||++ ++.+.  .+....  +.+.       ..+.+|||+|..             +.++..++
T Consensus         8 ~~~~i~i~G~~~~GKSsLin-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVR-ELTGK--KVRVGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCC--CCccCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            44679999999999999998 78774  232211  1111       157899999942             11111122


Q ss_pred             ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHH--------HHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDML--------KTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~--------~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                      ..      .+..++++++|.|.+....+.  ..|.        .++.+.....++|+++|+||+|+.+.+   .+...++
T Consensus        85 ~~------~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         85 ED------NADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             Hh------hhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHHHHH
Confidence            10      111467888888876532210  1221        011111112479999999999986432   3455666


Q ss_pred             HHHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         180 AYAWGV---------KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       180 ~~~~~~---------~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++.+++         +++++||++| ||+++|++|++.+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            666665         4799999999 999999999987654

>cd04171 SelB SelB subfamily

Probab=99.84  E-value=3.5e-20  Score=145.60  Aligned_cols=137  Identities=15%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-ccccc------cccCc--------eeEEEEEeCCCCcccc--CCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQ------TYHPD--------VFFIVYSDTNHTQRCL--TPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~------~~~~~--------~~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~  115 (250)
                      -|+++|++|||||||++ +|.+.. ..+..      +....        -..+.+|||+|+++..  ...++.       
T Consensus         2 ~i~i~G~~~~GKssl~~-~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~-------   73 (164)
T cd04171           2 IIGTAGHIDHGKTTLIK-ALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAG-------   73 (164)
T ss_pred             EEEEEecCCCCHHHHHH-HHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhh-------
Confidence            38999999999999998 887531 11211      11111        1267899999986321  122333       


Q ss_pred             ccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHHHHHHH---hCCeE
Q psy5810         116 QTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGKKLAYA---WGVKF  187 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~---~~~~~  187 (250)
                         ++|++++|+|+++   +++++.+. +   +...   ...|+++++||+|+.+...  ...++..+..+.   .+.++
T Consensus        74 ---~ad~ii~V~d~~~~~~~~~~~~~~-~---~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (164)
T cd04171          74 ---GIDLVLLVVAADEGIMPQTREHLE-I---LELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPI  143 (164)
T ss_pred             ---cCCEEEEEEECCCCccHhHHHHHH-H---HHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence               7999999999987   44554433 1   2111   2248999999999864321  112333444443   35789


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q psy5810         188 VETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~  207 (250)
                      +++||+++.|++++|+.+..
T Consensus       144 ~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         144 FPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEEeCCCCcCHHHHHHHHhh
Confidence            99999999999999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.83  E-value=1.9e-20  Score=165.11  Aligned_cols=147  Identities=20%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc----cccccccCcee--------EEEEEeCCCCccccCCCc---ccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~  115 (250)
                      .++|+++|.+|||||||+| ++++...    ...+|.+++..        .+.+|||+|..+.+....   ++...+.  
T Consensus       189 ~~~ValvG~~NvGKSSLln-~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~--  265 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFN-ALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE--  265 (351)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHH--
Confidence            3779999999999999999 8887421    11223333322        677899999853332221   2222222  


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                       +++||++++|+|++++.+++.+..|...+... ...+.|+++|+||+|+.+...+     ... .....+++++||++|
T Consensus       266 -~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       266 -VREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             -HHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence             23899999999999999888887776655433 3357899999999998542221     111 112346899999999


Q ss_pred             CCHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQ  208 (250)
Q Consensus       196 ~~I~~lf~~l~~~  208 (250)
                      .|++++++++.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0071|consensus

Probab=99.83  E-value=4.2e-20  Score=137.83  Aligned_cols=147  Identities=11%  Similarity=0.034  Sum_probs=123.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .++|+++|..++||||+++ .+..+ .....+|.|..++       ++.+||.+||.  +.+|..||.          +.
T Consensus        17 E~~ilmlGLd~aGKTtiLy-KLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~----------gt   85 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT----------GT   85 (180)
T ss_pred             cceEEEEecccCCceehhh-HHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhcc----------CC
Confidence            4559999999999999998 66553 5567788888877       56789999997  899999999          99


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~  195 (250)
                      .++|||.|..+.+..++.++.+..+.+.+...+.|+++.+||.|++..+  ++.++..+.     +...+-..++||.+|
T Consensus        86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~g  163 (180)
T KOG0071|consen   86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSG  163 (180)
T ss_pred             ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccc
Confidence            9999999999999999999888888888888899999999999998643  455555443     334566889999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .++.|-|.||.+.+.
T Consensus       164 dgL~eglswlsnn~~  178 (180)
T KOG0071|consen  164 DGLKEGLSWLSNNLK  178 (180)
T ss_pred             hhHHHHHHHHHhhcc
Confidence            999999999987654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.83  E-value=9.8e-20  Score=142.28  Aligned_cols=145  Identities=20%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             EEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCccccCCCccccccccccccCCCcEEE
Q psy5810          56 VHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFV  124 (250)
Q Consensus        56 iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~ii  124 (250)
                      |+|++|||||||++ ++.+.........+.+.           ..+.+|||+|++.......-......+....++|+++
T Consensus         1 l~G~~~~GKssl~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (158)
T cd01879           1 LVGNPNVGKTTLFN-ALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCCHHHHHH-HHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence            58999999999998 78774211111111111           1578999999863221100000011111112799999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810         125 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG  204 (250)
Q Consensus       125 lV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~  204 (250)
                      +|+|.+++++..   .|...+.+    .++|+++|+||+|+.+...+... ...+++.++.+++++||.++.|+.+++++
T Consensus        80 ~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          80 NVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999865532   34444433    36899999999999664444333 45777778899999999999999999999


Q ss_pred             HHHHH
Q psy5810         205 IARQA  209 (250)
Q Consensus       205 l~~~i  209 (250)
                      +...+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.82  E-value=7.2e-20  Score=160.04  Aligned_cols=147  Identities=20%  Similarity=0.087  Sum_probs=107.7

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccc------cCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRC------LTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~------~~~~~~~~~~~~~~  115 (250)
                      |+|+|.+|||||||++ ++......    ..+|..|+++        .+.+|||||..+.      +...+++       
T Consensus       160 V~lvG~pnaGKSTLl~-~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr-------  231 (329)
T TIGR02729       160 VGLVGLPNAGKSTLIS-AVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK-------  231 (329)
T ss_pred             EEEEcCCCCCHHHHHH-HHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH-------
Confidence            9999999999999998 88874221    1234444443        5778999997521      2222222       


Q ss_pred             ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                      .+..++++++|+|+++.   ++++++..|.+++..+.. ..+.|+++|+||+|+.+... ..+....+++.++.+++++|
T Consensus       232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iS  310 (329)
T TIGR02729       232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPIS  310 (329)
T ss_pred             HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEE
Confidence            11258999999999987   688888888888866532 24789999999999865432 23445556667788899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQA  209 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i  209 (250)
                      |+++.||+++++++.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.82  E-value=1.3e-19  Score=140.20  Aligned_cols=139  Identities=16%  Similarity=0.206  Sum_probs=101.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|.+|+|||||++ ++...  .+...+.++.               ..+.+||++|+.  ..++..++.      
T Consensus         2 ~ki~~~G~~~~GKstl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------   72 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLN-RLLGN--KFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYR------   72 (161)
T ss_pred             eEEEEECCCCCCHHHHHH-HHhCC--CCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHh------
Confidence            579999999999999998 77774  2333332222               146779999975  334444455      


Q ss_pred             cccCCCcEEEEEEeCCCH-HhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         115 VQTYHPDVFVIVYSVIER-KTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~-~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                          .+++++.++|+... .++.... .|...+...... +.|+++++||+|+.... +.......+......+++++||
T Consensus        73 ----~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa  146 (161)
T TIGR00231        73 ----AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSA  146 (161)
T ss_pred             ----hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeec
Confidence                78999999999887 7777765 677777655322 88999999999986533 3333344444444567999999


Q ss_pred             CCCCCHHHHHHHH
Q psy5810         193 GLVYKTDELLVGI  205 (250)
Q Consensus       193 ~~~~~I~~lf~~l  205 (250)
                      +++.|+.++|++|
T Consensus       147 ~~~~gv~~~~~~l  159 (161)
T TIGR00231       147 ETGKNIDSAFKIV  159 (161)
T ss_pred             CCCCCHHHHHHHh
Confidence            9999999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.82  E-value=4.4e-20  Score=143.98  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      ++|+++|.||||||||+| ++++.........|.|++           .+.++|+||.+.......-...-..+....++
T Consensus         1 i~ialvG~PNvGKStLfN-~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFN-ALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHH-HHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHH-HHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            579999999999999999 899875554455555554           67789999976321111111111112212379


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                      |+++.|.|.++.+.-..   ...++.+    -++|++++.||+|+...+.+.. ....+.+.+|+|++++||++++|+++
T Consensus        80 D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   80 DLIIVVVDATNLERNLY---LTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SEEEEEEEGGGHHHHHH---HHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CEEEEECCCCCHHHHHH---HHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998653323   3333433    3699999999999865444433 36678888999999999999999999


Q ss_pred             HHHHH
Q psy5810         201 LLVGI  205 (250)
Q Consensus       201 lf~~l  205 (250)
                      +++.+
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.82  E-value=7.2e-20  Score=145.56  Aligned_cols=150  Identities=20%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             EEcCCCCchhhhchhhhccccc---c-ccccccCc--------eeEEEEEeCCCCccccCCCccccccccc-cccCCCcE
Q psy5810          56 VHSDTNHTQRCLTSMPFCSQVE---N-FVQTYHPD--------VFFIVYSDTNHTQRCLTPMPFCSQVENF-VQTYHPDV  122 (250)
Q Consensus        56 iiG~~~vGKSsLi~~~~~~~~~---~-~~~~~~~~--------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~-~~~~~ad~  122 (250)
                      ++|++|||||||++ ++.+...   . ...+..+.        -..+.+|||+|........  +.....+ ..++++|+
T Consensus         1 iiG~~~~GKStll~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLN-ALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHH-HHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CCccHHHHHHHhccCE
Confidence            58999999999998 7877421   1 11122222        2256899999974221110  0000010 11227999


Q ss_pred             EEEEEeCCCH------HhHHHHHHHHHHHHhhhCC------CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         123 FVIVYSVIER------KTFKKAEDMLKTLWDSKYI------GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       123 iilV~D~~~~------~Sf~~~~~~~~~i~~~~~~------~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                      +++|+|.+++      .+++.+..|..++......      .+.|+++|+||+|+.....+............+.+++++
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence            9999999998      5888888888888644321      478999999999986544433332334444556779999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~  208 (250)
                      ||+++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG4423|consensus

Probab=99.82  E-value=2.4e-21  Score=151.08  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=127.7

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      ..+..|+.|+|+.|+|||++++ +++.  ..|...|..+++                ++++||.+||+  ..++..||+ 
T Consensus        22 r~hL~k~lVig~~~vgkts~i~-ryv~--~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk-   97 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIK-RYVH--QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK-   97 (229)
T ss_pred             hhhhhhhheeeeccccchhHHH-HHHH--HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec-
Confidence            4566779999999999999998 7887  566666666665                56789999998  567788999 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhh---hCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHHHhCC
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVANKADLERRRQVT-HSDGKKLAYAWGV  185 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~  185 (250)
                               .|++.++|||+++..+|+....|..++...   .....+|+++.+||||.+...... .....++++++|+
T Consensus        98 ---------ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf  168 (229)
T KOG4423|consen   98 ---------EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF  168 (229)
T ss_pred             ---------CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc
Confidence                     899999999999999999999999988532   334468899999999986533222 4677889999998


Q ss_pred             e-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         186 K-FVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       186 ~-~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      . ++|+|++.+.||.|.-..|++.+..+..
T Consensus       169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  169 EGWTETSAKENKNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             cceeeeccccccChhHHHHHHHHHHHhhcc
Confidence            7 9999999999999999999998876653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=1.9e-19  Score=165.07  Aligned_cols=160  Identities=15%  Similarity=0.089  Sum_probs=104.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccccC----CCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRCLT----PMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~~~----~~~~~~~~~~  113 (250)
                      ..+||+++|.+|||||||++ ++++..... .+..+.+.           ..+.+|||+|..+...    ..++.. ...
T Consensus       210 ~~~kI~iiG~~nvGKSSLin-~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~-~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLN-KLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYAS-LRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHH-HHH
Confidence            45889999999999999999 788742111 11112211           1567999999753221    122211 111


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHH-HHHHHhCCeEEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGK-KLAYAWGVKFVET  190 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~-~~~~~~~~~~~ev  190 (250)
                      ...++++|++++|||++++.+++++. |+..+..    .+.|+|+|+||+|+.+...  ....+.. .+......+++++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence            11223899999999999998888774 4454432    5789999999999854211  1111121 1222234679999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      ||++|.||+++|+.+.+.+......-
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~~~i  388 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWDTRI  388 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcccC
Confidence            99999999999999998776544443

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.81  E-value=2.6e-19  Score=162.21  Aligned_cols=139  Identities=16%  Similarity=0.089  Sum_probs=101.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-ee-----------EEEEEeCCCCcccc----------CCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-VF-----------FIVYSDTNHTQRCL----------TPMPF  107 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-~~-----------~i~i~Dt~g~~~~~----------~~~~~  107 (250)
                      ..+||+++|++|||||||+| ++++....+.+.+..+ ..           .+.+|||+|+....          ...++
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN-~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLN-ALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            34679999999999999999 8887432223222222 11           56799999985211          11223


Q ss_pred             ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeE
Q psy5810         108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKF  187 (250)
Q Consensus       108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  187 (250)
                      .          ++|++++|||.+++.+++..  |+..+..    .+.|+++|+||+|+...      +...+++.++.++
T Consensus       281 ~----------~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~  338 (442)
T TIGR00450       281 K----------QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN------SLEFFVSSKVLNS  338 (442)
T ss_pred             h----------hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc------chhhhhhhcCCce
Confidence            3          89999999999999888775  7766632    46899999999998542      2244566778889


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +++||++ .||+++|+.+.+.+.+.
T Consensus       339 ~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       339 SNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EEEEEec-CCHHHHHHHHHHHHHHH
Confidence            9999998 69999999999877654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0096|consensus

Probab=99.80  E-value=1.2e-19  Score=141.93  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=121.7

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      .-..|++++|+.|.|||++++ +...  ..|..+|.++++               ++..|||+||+  ..+...||-   
T Consensus         8 ~~~fklvlvGdgg~gKtt~vk-r~lt--geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI---   81 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVK-RHLT--GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYI---   81 (216)
T ss_pred             cceEEEEEecCCcccccchhh-hhhc--ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEE---
Confidence            345679999999999999998 6666  677777777765               56689999998  466777888   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++.++|++||++.+-++.++..|.+++.+..  .++||++.|||.|.+. +.+ ......+-+..++.|+++|
T Consensus        82 -------~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iS  150 (216)
T KOG0096|consen   82 -------QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEIS  150 (216)
T ss_pred             -------ecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc-ccc-ccccceeeecccceeEEee
Confidence                   8999999999999999999999999997654  6799999999999865 222 2334446667788999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |+.+.|.+.-|.|+++.+...
T Consensus       151 aksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  151 AKSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             cccccccccchHHHhhhhcCC
Confidence            999999999999999987643

>PRK11058 GTPase HflX; Provisional

Probab=99.80  E-value=3.2e-19  Score=160.75  Aligned_cols=150  Identities=16%  Similarity=0.058  Sum_probs=101.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccc----ccccccccCcee--------EEEEEeCCCCccccCCCc---cccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQV----ENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~----~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~  116 (250)
                      .+|+++|.+|||||||+| ++++..    +....|.+++..        .+.+|||+|..+.+....   +....+.   
T Consensus       198 p~ValVG~~NaGKSSLlN-~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~---  273 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFN-RITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE---  273 (426)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH---
Confidence            579999999999999999 788742    122234444432        567899999854322211   1112222   


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLV  195 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~  195 (250)
                      +++||++++|+|++++.+++.+..|...+... ...++|+++|+||+|+.....   ....  ....+.+ ++++||++|
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG  347 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTG  347 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCC
Confidence            23899999999999998888876554444322 235789999999999854211   1111  1123555 589999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy5810         196 YKTDELLVGIARQAGL  211 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~  211 (250)
                      .|++++++++...+..
T Consensus       348 ~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        348 AGIPLLFQALTERLSG  363 (426)
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999988754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.80  E-value=4.2e-19  Score=138.16  Aligned_cols=143  Identities=15%  Similarity=0.097  Sum_probs=95.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc-cccCc-----------eeEEEEEeCCCCccccCCCccccccccccccCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPD-----------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~-----------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~  119 (250)
                      ++|+++|++|+|||||++ ++.+....... ..+.+           -..+.+|||+|................+.....
T Consensus         2 ~~i~l~G~~~~GKstli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLN-ALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            479999999999999998 77764211111 11111           126789999997532211000000001111127


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|++++|+|++++.+......|..       ....|+++|+||+|+.+....       .....+.+++++||+++.|+.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            999999999999888777654432       257899999999998653322       334446789999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         200 ELLVGIARQA  209 (250)
Q Consensus       200 ~lf~~l~~~i  209 (250)
                      +++.+|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.80  E-value=7.7e-19  Score=134.35  Aligned_cols=139  Identities=26%  Similarity=0.332  Sum_probs=100.0

Q ss_pred             EEcCCCCchhhhchhhhccccc---cccccccCc-----------eeEEEEEeCCCCcc--ccCCCccccccccccccCC
Q psy5810          56 VHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPD-----------VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        56 iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~-----------~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~  119 (250)
                      |+|.+|+|||||++ ++.+...   ....+. ..           ...+.+||++|+..  ..+..++.          .
T Consensus         1 iiG~~~~GKStl~~-~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----------~   68 (157)
T cd00882           1 VVGDSGVGKTSLLN-RLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYR----------G   68 (157)
T ss_pred             CCCcCCCcHHHHHH-HHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhc----------C
Confidence            58999999999998 7776322   111111 11           11577999999762  22233444          7


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHH-HHHHHHHhCCeEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSD-GKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      +|++++|+|.+++.+++....|.............|+++++||+|+.......... ........+.+++++|+.++.|+
T Consensus        69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  148 (157)
T cd00882          69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV  148 (157)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence            99999999999999999998884444444456789999999999986533332222 34455566788999999999999


Q ss_pred             HHHHHHHH
Q psy5810         199 DELLVGIA  206 (250)
Q Consensus       199 ~~lf~~l~  206 (250)
                      .++++++.
T Consensus       149 ~~~~~~l~  156 (157)
T cd00882         149 EELFEELA  156 (157)
T ss_pred             HHHHHHHh
Confidence            99999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK00089 era GTPase Era; Reviewed

Probab=99.79  E-value=3e-19  Score=154.18  Aligned_cols=182  Identities=16%  Similarity=0.091  Sum_probs=109.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc----cccCc--------eeEEEEEeCCCCccccCCCccccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPD--------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~--------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~  116 (250)
                      ++..+|+|+|.+|||||||+| ++++......+    +....        -..+.+|||+|...................
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin-~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHH-HHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            455679999999999999999 78774211111    10000        026778999997532211100000011112


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGLV  195 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~  195 (250)
                      +.++|++++|+|+++..+  ....++....+   ..+.|+++|+||+|+...+.........+.+..+ .+++++||+++
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~  156 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG  156 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence            238999999999998322  22233322222   2468999999999986332223334455555444 56999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         196 YKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      .|+.++++++...+.......+....+....+.++..+.|+
T Consensus       157 ~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe  197 (292)
T PRK00089        157 DNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIRE  197 (292)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999988765444333333333444445554444

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=1.1e-18  Score=156.49  Aligned_cols=148  Identities=20%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~  115 (250)
                      |+++|.+||||||||+ ++++....    ..+|..|.++        .+.+||+||...      .+...+++       
T Consensus       161 VglVG~pNaGKSTLLn-~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLr-------  232 (424)
T PRK12297        161 VGLVGFPNVGKSTLLS-VVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLR-------  232 (424)
T ss_pred             EEEEcCCCCCHHHHHH-HHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHH-------
Confidence            9999999999999998 88875322    1234444433        578899999742      12222222       


Q ss_pred             ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                      .+.+++++++|+|+++.   +.++++..|..++..+.. ..+.|+++|+||+|+..    ..+....+.+.++.+++++|
T Consensus       233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iS  308 (424)
T PRK12297        233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPIS  308 (424)
T ss_pred             HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEe
Confidence            11258999999999865   678888888888866532 24789999999999843    23445667777778899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |+++.|++++++++.+.+...+
T Consensus       309 A~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        309 ALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999998776543

>KOG0075|consensus

Probab=99.79  E-value=1.5e-19  Score=135.92  Aligned_cols=144  Identities=14%  Similarity=0.084  Sum_probs=113.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      .+.+.++|..++|||||+| ....  +.+...++|+++           .+.+||.+||.  +.+|..|++         
T Consensus        20 emel~lvGLq~sGKtt~Vn-~ia~--g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR---------   87 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVN-VIAR--GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---------   87 (186)
T ss_pred             eeeEEEEeeccCCcceEEE-EEee--ccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh---------
Confidence            4559999999999999998 5554  466666666665           57799999996  788999999         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa  192 (250)
                       +++++++|.|..+++.++..++.+..+.....-..+|++++|||.|+++  .++..+...     -..+..+..|.+|+
T Consensus        88 -~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siSc  164 (186)
T KOG0075|consen   88 -GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISC  164 (186)
T ss_pred             -cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEE
Confidence             9999999999999999988888888776655667899999999999875  333332211     12233455799999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQA  209 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i  209 (250)
                      ++..||+.+..||++.-
T Consensus       165 ke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  165 KEKVNIDITLDWLIEHS  181 (186)
T ss_pred             cCCccHHHHHHHHHHHh
Confidence            99999999999998753

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.79  E-value=3e-19  Score=133.51  Aligned_cols=99  Identities=17%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc----ccccccCcee-----------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF-----------FIVYSDTNHTQR--CLTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~  115 (250)
                      ||+|+|++|||||||++ +|++....    ..+..+.++.           .+.+||++|++.  ..+.....       
T Consensus         1 kI~V~G~~g~GKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-------   72 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIR-RLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLK-------   72 (119)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHH-------
T ss_pred             CEEEECcCCCCHHHHHH-HHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhh-------
Confidence            69999999999999997 88874222    1112222221           567899999862  22222344       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHH---HHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAED---MLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~---~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                         ++|++++|||+++++||+.+.+   |+..+...  ..++|++|||||.|
T Consensus        73 ---~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   73 ---KADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             ---HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             ---cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence               7999999999999999999855   55555432  35699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.79  E-value=4.8e-19  Score=144.02  Aligned_cols=133  Identities=15%  Similarity=0.072  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccccc----------------ccCce-----------eEEEEEeCCCCc--cccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQT----------------YHPDV-----------FFIVYSDTNHTQ--RCLT  103 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----------------~~~~~-----------~~i~i~Dt~g~~--~~~~  103 (250)
                      +|+++|++|||||||++ +|+.....|...                .+.++           ..+.+|||+|++  ...+
T Consensus         4 ~i~ivG~~~~GKTsL~~-~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           4 NIAIIAHVDHGKTTLVD-ALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             EEEEEecCCCCHHHHHH-HHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            49999999999999998 777521222211                22221           167899999986  3344


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHHHHHHH
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGKKLAYA  182 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~  182 (250)
                      ..+++          ++|++++|||+++.. +.....|+..+..    .++|+++|+||+|+...+. ...++..++...
T Consensus        83 ~~~~~----------~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  147 (194)
T cd01891          83 ERVLS----------MVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIE  147 (194)
T ss_pred             HHHHH----------hcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            45555          899999999998742 3333445554432    4789999999999864332 123344444422


Q ss_pred             -------hCCeEEEEecCCCCCHHHH
Q psy5810         183 -------WGVKFVETSVGLVYKTDEL  201 (250)
Q Consensus       183 -------~~~~~~evSa~~~~~I~~l  201 (250)
                             .+++++++||++|.|+.++
T Consensus       148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         148 LGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             hCCccccCccCEEEeehhcccccccc
Confidence                   3678999999999887443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.78  E-value=7.7e-19  Score=159.74  Aligned_cols=145  Identities=18%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~  118 (250)
                      .++|+++|.+|||||||+| ++++....+.. ..+.+.           ..+.+|||+|...................++
T Consensus       215 ~~kV~ivG~~nvGKSSLln-~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~  293 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLN-ALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE  293 (449)
T ss_pred             CCEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence            3679999999999999999 78774221222 222221           1578999999753110000000000011122


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|++++|+|.+++.++++...|..       ..+.|+++|+||+|+.+...+.        ...+.+++++||++|.|+
T Consensus       294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            8999999999999988886655543       2578999999999986533221        334567999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy5810         199 DELLVGIARQAGL  211 (250)
Q Consensus       199 ~~lf~~l~~~i~~  211 (250)
                      +++++++.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=8.3e-19  Score=160.82  Aligned_cols=175  Identities=17%  Similarity=0.067  Sum_probs=109.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCccccCCC--cccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQT  117 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~  117 (250)
                      .+|+|+|.+|||||||+| ++++... ....+.+.+..           .+.+|||+|.+......  .+......  .+
T Consensus        39 ~~V~IvG~~nvGKSSL~n-rl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~--~~  115 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVN-RILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEV--AM  115 (472)
T ss_pred             CEEEEEcCCCCCHHHHHH-HHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHH--HH
Confidence            469999999999999999 7887421 12333343322           47789999976211110  01100111  12


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      +.||++|+|+|+++..++.. ..|...+..    .++|+++|+||+|+...   ..+....+...++ ..+++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            28999999999999866543 334444432    47999999999998542   1222222333333 257999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHH---------HHhhhhhhhhhhhhccCC
Q psy5810         198 TDELLVGIARQAGLNKKRNKLLA---------KKQKKMASYINNIKQFKW  238 (250)
Q Consensus       198 I~~lf~~l~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  238 (250)
                      ++++|++++..+.+.........         ......+++++++.+...
T Consensus       187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~  236 (472)
T PRK03003        187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER  236 (472)
T ss_pred             cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence            99999999988765221111000         111367788888887653

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=3e-18  Score=152.86  Aligned_cols=180  Identities=14%  Similarity=0.056  Sum_probs=119.5

Q ss_pred             EEEEcCCCCchhhhchhhhccccccc----cccccCcee--------EEEEEeCCCCccccCCC--ccccccccccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF--------FIVYSDTNHTQRCLTPM--PFCSQVENFVQTYH  119 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~--------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~~~  119 (250)
                      |+|+|.||||||||+| ++++.....    .+|..+..+        .+.++||||..+.....  .-..+..   .+.+
T Consensus       162 ValVG~PNaGKSTLln-~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---~i~r  237 (390)
T PRK12298        162 VGLLGLPNAGKSTFIR-AVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---HLER  237 (390)
T ss_pred             EEEEcCCCCCHHHHHH-HHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH---HHHh
Confidence            9999999999999999 788752221    122233322        47889999975321110  0001111   1227


Q ss_pred             CcEEEEEEeCC---CHHhHHHHHHHHHHHHhhh-CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecC
Q psy5810         120 PDVFVIVYSVI---ERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVG  193 (250)
Q Consensus       120 ad~iilV~D~~---~~~Sf~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~  193 (250)
                      ++++++|+|++   +.+.++.+..|++++..+. ...+.|+++|+||+|+.....+ .+....+.+.++  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999998   5567788888888886542 1246899999999998643332 233444555544  368999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         194 LVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      ++.|++++++++...+.+.....+....+.+..+.++..+.|++-
T Consensus       317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~  361 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQL  361 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHh
Confidence            999999999999998876554434333334455566667776653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.78  E-value=3e-18  Score=135.29  Aligned_cols=136  Identities=19%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccc------cccC-----c-----eeEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ------TYHP-----D-----VFFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~------~~~~-----~-----~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .|+|+|++|||||||++ ++...  .+..      +...     .     -..+.+|||+|++  ..++...+.      
T Consensus         2 ~i~iiG~~~~GKtsli~-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~------   72 (168)
T cd01887           2 VVTVMGHVDHGKTTLLD-KIRKT--NVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGAS------   72 (168)
T ss_pred             EEEEEecCCCCHHHHHH-HHHhc--ccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHh------
Confidence            38999999999999998 78764  2211      1100     0     1257899999985  233333444      


Q ss_pred             cccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHH----H--hC
Q psy5810         115 VQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT-HSDGKKLAY----A--WG  184 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~----~--~~  184 (250)
                          .+|++++|+|+++.   ++++.+.    .+..    .++|+++|+||+|+.....-. .++...+..    .  ..
T Consensus        73 ----~~d~il~v~d~~~~~~~~~~~~~~----~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (168)
T cd01887          73 ----LTDIAILVVAADDGVMPQTIEAIK----LAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGD  140 (168)
T ss_pred             ----hcCEEEEEEECCCCccHHHHHHHH----HHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCc
Confidence                79999999999884   3343322    2222    468999999999986422100 111111111    1  13


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ++++++||++|.|+.++++++.+..
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         141 VQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             CcEEEeecccCCCHHHHHHHHHHhh
Confidence            5799999999999999999998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01894 EngA1 EngA1 subfamily

Probab=99.77  E-value=1.6e-18  Score=135.02  Aligned_cols=142  Identities=19%  Similarity=0.100  Sum_probs=89.8

Q ss_pred             EEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCcccccccc-ccccCCCc
Q psy5810          55 IVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMPFCSQVEN-FVQTYHPD  121 (250)
Q Consensus        55 ~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~~~~~~~~-~~~~~~ad  121 (250)
                      +++|.+|||||||++ ++.+....+.....++.            ..+.+|||+|...... ......... ...++++|
T Consensus         1 ~l~G~~~~GKssl~~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFN-RLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHH-HHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCC
Confidence            589999999999998 78764222222221111            1577999999863221 000000000 01112799


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKTDE  200 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I~~  200 (250)
                      ++++|+|..++.+.... .+...+ +.   .+.|+++|+||+|+.+....     .......+. +++++||+++.|+++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~-~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYL-RK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHH-Hh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            99999999876554432 122222 21   35899999999998653221     223344566 689999999999999


Q ss_pred             HHHHHHHH
Q psy5810         201 LLVGIARQ  208 (250)
Q Consensus       201 lf~~l~~~  208 (250)
                      +|+++++.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0076|consensus

Probab=99.77  E-value=3.1e-19  Score=137.84  Aligned_cols=152  Identities=14%  Similarity=0.152  Sum_probs=118.8

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhh---hccc-----cccccccccCcee-------EEEEEeCCCCc--cccCCCccc
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMP---FCSQ-----VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFC  108 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~---~~~~-----~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~  108 (250)
                      ...|.   |+|+|..++|||||+...   |...     .....++.|..++       .+.+||.+||+  +++|..||.
T Consensus        15 Ke~y~---vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   15 KEDYS---VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhh---heeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence            34556   999999999999999611   2211     1233455555555       56689999998  899999999


Q ss_pred             cccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH---HHH---
Q psy5810         109 SQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL---AYA---  182 (250)
Q Consensus       109 ~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~---  182 (250)
                                .+|++|+++|.+|++-|+....-++.+..+....++|+++.+||.|+.+..  ...+....   ++.   
T Consensus        92 ----------~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~  159 (197)
T KOG0076|consen   92 ----------LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPR  159 (197)
T ss_pred             ----------HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCC
Confidence                      899999999999999999998888888887777899999999999997633  22333222   222   


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ...++.++||.+|+||++...|+++.+.+.
T Consensus       160 rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            246799999999999999999999988766

>COG1159 Era GTPase [General function prediction only]

Probab=99.77  E-value=3.8e-18  Score=143.36  Aligned_cols=185  Identities=15%  Similarity=0.030  Sum_probs=128.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMPFCSQVENFV  115 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~  115 (250)
                      ..+..+|+|+|.||||||||+| ++++..-...+....|.            ..+.+.||||-.+.-....-......+.
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN-~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHH-HHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            3566779999999999999999 88886222222221111            1677899999875543343333444555


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGL  194 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~  194 (250)
                      ++.++|+++||.|.+++..-  -.+|+-+..+.   .+.|++++.||+|.......-......+...... ..+++||++
T Consensus        82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            66699999999999885432  22333333222   4689999999999755333112222222233333 489999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      |.|+..+.+.+...+.+.....+....+.+..+..+..+.|++-
T Consensus       157 g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~  200 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKL  200 (298)
T ss_pred             cCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHH
Confidence            99999999999999999888888888888888888888888753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=7.5e-18  Score=153.23  Aligned_cols=151  Identities=15%  Similarity=0.065  Sum_probs=103.6

Q ss_pred             EEEEcCCCCchhhhchhhhccccccc----cccccCcee-------EEEEEeCCCCcc------ccCCCccccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF-------FIVYSDTNHTQR------CLTPMPFCSQVENFVQ  116 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~-------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~~  116 (250)
                      |+|||.+|||||||++ ++++.....    .+|..+..+       .+.+|||+|...      .+...+++       .
T Consensus       162 V~LVG~PNAGKSTLln-~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr-------h  233 (500)
T PRK12296        162 VGLVGFPSAGKSSLIS-ALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR-------H  233 (500)
T ss_pred             EEEEEcCCCCHHHHHH-HHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH-------H
Confidence            9999999999999998 887752221    233333333       677899999642      11112221       1


Q ss_pred             cCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhh----------CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810         117 TYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSK----------YIGEKAVILVANKADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~----------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      +..+|++|+|+|+++.    +.++++..|..++..+.          ...+.|+|+|+||+|+.+.+.+. +........
T Consensus       234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~  312 (500)
T PRK12296        234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEA  312 (500)
T ss_pred             HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHH
Confidence            1269999999999863    35566666666665543          22468999999999986533321 222233345


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      .+++++++||+++.|+++++.+|.+.+...+
T Consensus       313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        313 RGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            5789999999999999999999998876544

>KOG1673|consensus

Probab=99.76  E-value=8.7e-18  Score=127.58  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCcc--ccCCCccccc
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQR--CLTPMPFCSQ  110 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~~~~~~  110 (250)
                      .+..-.+||.++||+..|||||+- .|+++  +..+..+.|...-           .+.|||.+||++  .+.+..-.  
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mv-kYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~--   91 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMV-KYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACK--   91 (205)
T ss_pred             cccceEEEEEeecccccCceeeeh-hhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeec--
Confidence            445567899999999999999997 88874  1223333333322           466899999983  33455445  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-----CCCccCHHHHHHHHHHhCC
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-----RRRQVTHSDGKKLAYAWGV  185 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~  185 (250)
                              ++-+++|+||++.+.+++.+.+|+.+....+ ..-+ -|+||+|.|+-     +.+.--..+++.+|+.++.
T Consensus        92 --------dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA  161 (205)
T KOG1673|consen   92 --------DSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNA  161 (205)
T ss_pred             --------CcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence                    8999999999999999999999999875542 2233 46789999971     1111123457889999999


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         186 KFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       186 ~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +.+.+|+....||+.+|..+..++..-
T Consensus       162 sL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  162 SLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             cEEEeeccccccHHHHHHHHHHHHhCC
Confidence            999999999999999999998887653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.76  E-value=2.2e-17  Score=149.86  Aligned_cols=157  Identities=18%  Similarity=0.097  Sum_probs=100.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCce-----------eEEEEEeCCCCcccc--CC--Ccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDV-----------FFIVYSDTNHTQRCL--TP--MPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~-----------~~i~i~Dt~g~~~~~--~~--~~~~~~~~~  113 (250)
                      ..++|+++|.+|||||||++ ++++...... +..+.+.           ..+.+|||+|..+..  ..  ..+. ....
T Consensus       171 ~~~~v~ivG~~~~GKSsLin-~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~-~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVN-ALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS-VLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH-HHHH
Confidence            45789999999999999998 7876422111 1111111           157899999975221  10  0110 1111


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HH----hCCeEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YA----WGVKFV  188 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~  188 (250)
                      ...++.+|++|+|+|.+++.+..+.. ++..+.+    .+.|+++|+||+|+... ....++..... ..    .+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            11223899999999999988877653 3343322    46899999999998621 11122222222 22    246899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++||++|.|++++|+++.+.+.....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~  348 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANR  348 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999987665433

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.76  E-value=1.3e-17  Score=131.65  Aligned_cols=150  Identities=18%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccccccc-C-----------ceeEEEEEeCCCCccccCCC----ccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-P-----------DVFFIVYSDTNHTQRCLTPM----PFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~-----------~~~~i~i~Dt~g~~~~~~~~----~~~~~~~~~  114 (250)
                      .++|+++|++|+|||||++ ++.+.......... .           .-..+.+|||+|........    .+. .....
T Consensus         2 ~~~i~i~G~~~~GKstli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~-~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVN-ALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS-VLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHH-HHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH-HHHHH
Confidence            4679999999999999998 78774211111100 0           01257799999975321100    000 01111


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HHh----CCeEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YAW----GVKFVE  189 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~~----~~~~~e  189 (250)
                      ..+.++|++++|+|.+++.+..... ++..+..    .+.|+++++||+|+.+......++..+.. +.+    +.++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            1122799999999999987765543 3333322    36899999999998654322233322222 333    367999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q psy5810         190 TSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~  207 (250)
                      +||+++.|+.++++++.+
T Consensus       155 ~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         155 ISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             EeccCCCCHHHHHHHHHH
Confidence            999999999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.74  E-value=1.3e-17  Score=133.99  Aligned_cols=139  Identities=17%  Similarity=0.064  Sum_probs=95.0

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccc------------------cCc-----------eeEEEEEeCCCCcc--cc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTY------------------HPD-----------VFFIVYSDTNHTQR--CL  102 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~------------------~~~-----------~~~i~i~Dt~g~~~--~~  102 (250)
                      |+|+|.+|+|||||++ .+++.  ......                  +.+           -..+.+|||+|...  ..
T Consensus         2 v~v~G~~~~GKStlln-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           2 VGIAGHVDHGKTTLTE-RLLYV--TGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             EEEEeCCCCCHHHHHH-HHHHh--cCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence            8999999999999998 77663  211111                  111           12678999999752  33


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLA  180 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~  180 (250)
                      +..++.          .+|++++|+|.+++.+... ..++..+..    .+.|+++|+||+|+.....+  ..++..+..
T Consensus        79 ~~~~~~----------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~  143 (189)
T cd00881          79 VIRGLS----------VSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELL  143 (189)
T ss_pred             HHHHHH----------hcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence            334444          7999999999998765543 334444432    57999999999998642211  123333333


Q ss_pred             HH--------------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         181 YA--------------WGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       181 ~~--------------~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +.              ...+++++||++|.|++++|.++.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         144 GLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            33              3467999999999999999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.74  E-value=1.8e-17  Score=155.16  Aligned_cols=143  Identities=17%  Similarity=0.072  Sum_probs=97.6

Q ss_pred             cCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCcEEEEE
Q psy5810          58 SDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIV  126 (250)
Q Consensus        58 G~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV  126 (250)
                      |++|||||||+| ++.+.........+.+++           .+.+|||+|+++.............+....++|++++|
T Consensus         1 G~pNvGKSSL~N-~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFN-ALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHH-HHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            899999999999 888753222222223322           56799999987422111001111122222378999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810         127 YSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       127 ~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~  206 (250)
                      +|.++.+.   ...+..++.+    .++|+++|+||+|+.+.+.+. .+.+.+++..+++++++||++|.|++++++++.
T Consensus        80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            99997532   2233333322    478999999999986655554 346788889999999999999999999999998


Q ss_pred             HHH
Q psy5810         207 RQA  209 (250)
Q Consensus       207 ~~i  209 (250)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04163 Era Era subfamily

Probab=99.73  E-value=2.3e-17  Score=129.04  Aligned_cols=149  Identities=19%  Similarity=0.138  Sum_probs=91.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCc------------eeEEEEEeCCCCccccC--CCccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD------------VFFIVYSDTNHTQRCLT--PMPFCSQVENFVQ  116 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~------------~~~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~  116 (250)
                      ..+|+++|.+|+|||||++ ++.+...........+            ...+.+|||+|......  ...+.....  ..
T Consensus         3 ~~~i~~~G~~g~GKttl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~--~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAW--SA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHH-HHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHH--HH
Confidence            4679999999999999998 7766311111100001            12567999999752111  011000000  01


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGL  194 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~  194 (250)
                      +..+|++++|+|.+++.+  .... +...+..    .+.|+++|+||+|+........+....+....+ .+++++|+++
T Consensus        80 ~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          80 LKDVDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHhCCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            127999999999998722  2222 3333322    368999999999986322222333344444443 5799999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQ  208 (250)
Q Consensus       195 ~~~I~~lf~~l~~~  208 (250)
                      +.|+++++++|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.72  E-value=3.3e-17  Score=132.85  Aligned_cols=157  Identities=13%  Similarity=0.014  Sum_probs=96.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce--------eEEEEEeCCCCccccCCC----cccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV--------FFIVYSDTNHTQRCLTPM----PFCSQVEN  113 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~--------~~i~i~Dt~g~~~~~~~~----~~~~~~~~  113 (250)
                      ....++|+++|++|||||||++ ++++..  ....++.+.+.        ..+.+|||+|......+.    .+......
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLIN-ALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHH-HHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4466779999999999999998 888731  22223332221        257789999954211110    01111111


Q ss_pred             cccc-CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHHHHHHHhCCeEEEE
Q psy5810         114 FVQT-YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       114 ~~~~-~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~ev  190 (250)
                      +... ..++++++|+|.+++.+.... .+...+ ..   .+.|+++++||+|+.+...  ...+++.+.......+++++
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  174 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF  174 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            1111 145788999998876544331 111222 21   4689999999999854222  11233444444446789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~  210 (250)
                      ||+++.|++++++.+.+.+.
T Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        175 SSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999886653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=9.2e-17  Score=153.90  Aligned_cols=156  Identities=12%  Similarity=0.084  Sum_probs=101.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccc-cCcee-----------EEEEEeCCCCccccCC----Ccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY-HPDVF-----------FIVYSDTNHTQRCLTP----MPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~-~~~~~-----------~i~i~Dt~g~~~~~~~----~~~~~~~~~  113 (250)
                      ..+||+++|.+|||||||+| ++.+....+...+ +.+..           .+.+|||+|..+....    .++. ....
T Consensus       449 ~~~kI~ivG~~nvGKSSLin-~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~-~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLN-QLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYS-SLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHH-HHHH
Confidence            34789999999999999999 7877422122211 11111           5679999997532211    1221 1111


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HHHHh----CCeEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LAYAW----GVKFV  188 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~----~~~~~  188 (250)
                      ...++++|++++|+|.++..+++++. ++..+..    .+.|+++|+||+|+.+...  .+.... +...+    ..+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence            12234899999999999998888765 3344432    4789999999999854211  111221 11211    24579


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++||++|.|+.++|+.+.+.+.....
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987765433

>KOG0072|consensus

Probab=99.71  E-value=3.1e-17  Score=123.05  Aligned_cols=149  Identities=14%  Similarity=0.030  Sum_probs=114.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      ..+.++++|..|+|||++++ ++.. ......++++..++       ++++||..||-  +.+|..||.          +
T Consensus        17 ~e~rililgldGaGkttIly-rlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~----------d   85 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILY-RLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYA----------D   85 (182)
T ss_pred             cceEEEEeeccCCCeeEEEE-EcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhc----------c
Confidence            55679999999999999998 5544 33345566666665       67899999986  889999999          9


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-----HHHHHHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-----KKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~evSa~~  194 (250)
                      .|++|+|.|.+|++...-....+-.+.+.....+..++|++||.|.+...  +..|+     ..-.++.-+.++++||.+
T Consensus        86 t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k  163 (182)
T KOG0072|consen   86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVK  163 (182)
T ss_pred             cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeecccc
Confidence            99999999999987665555555555555566778899999999986422  22222     222344457899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |+|+++..+||.+.+..
T Consensus       164 g~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  164 GEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             ccCCcHHHHHHHHHHhc
Confidence            99999999999987754

>cd01889 SelB_euk SelB subfamily

Probab=99.71  E-value=3.9e-17  Score=132.51  Aligned_cols=146  Identities=16%  Similarity=0.023  Sum_probs=91.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc------cccc-----cccccCc---------------------eeEEEEEeCCCCc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ------VENF-----VQTYHPD---------------------VFFIVYSDTNHTQ   99 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~------~~~~-----~~~~~~~---------------------~~~i~i~Dt~g~~   99 (250)
                      ++|+++|+.|+|||||++ +|+..      ....     ..+.+..                     -..+.+|||+|+.
T Consensus         1 ~~i~i~G~~~~GKstLi~-~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAK-ALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHH-HHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence            469999999999999998 78751      0000     0111111                     2267899999985


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHH
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGK  177 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~  177 (250)
                      .. ...++.       .+..+|++++|+|.++.........|.  +...   .+.|+++++||+|+.....  ...++..
T Consensus        80 ~~-~~~~~~-------~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~  146 (192)
T cd01889          80 SL-IRTIIG-------GAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMK  146 (192)
T ss_pred             HH-HHHHHH-------HHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence            21 111111       112689999999999854444333332  1111   3579999999999853211  1222232


Q ss_pred             HHH-H------HhCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         178 KLA-Y------AWGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       178 ~~~-~------~~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +.. .      ..+++++++||++|.|++++++++..++.-
T Consensus       147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            221 1      135789999999999999999999987753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.71  E-value=1.1e-16  Score=131.13  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCc---e-----------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD---V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~---~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      .|+++|++|||||+|++ +|...  .+..++.++   +           ..+.+||++|++  +..+..+++        
T Consensus         2 ~vll~G~~~sGKTsL~~-~l~~~--~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~--------   70 (203)
T cd04105           2 TVLLLGPSDSGKTALFT-KLTTG--KYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLK--------   70 (203)
T ss_pred             eEEEEcCCCCCHHHHHH-HHhcC--CCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHh--------
Confidence            38999999999999998 78773  343333221   1           147799999987  333344455        


Q ss_pred             cCCC-cEEEEEEeCCCH-HhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccC
Q psy5810         117 TYHP-DVFVIVYSVIER-KTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLER  167 (250)
Q Consensus       117 ~~~a-d~iilV~D~~~~-~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~  167 (250)
                        ++ +++|+|+|.++. .++..+..|+..+....  ....+|+++++||+|+..
T Consensus        71 --~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          71 --NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             --ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence              67 999999999998 78888877776664322  235899999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.70  E-value=1.9e-16  Score=151.76  Aligned_cols=150  Identities=12%  Similarity=0.053  Sum_probs=106.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccC--CCcc-cc-cccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLT--PMPF-CS-QVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~--~~~~-~~-~~~~~~  115 (250)
                      .++|+++|.+|||||||+| ++.+.........|.|++           ++.+|||||.+....  ..+. .. ....+.
T Consensus         3 ~~~IaLvG~pNvGKSTLfN-~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFN-QLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            3569999999999999999 888864444444555554           578999999874221  1100 00 001121


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      ....+|++++|+|.++.+.-   ..|..++.+    .++|++++.||+|+.+.+.+. .+.+++.+.+|++++++||+++
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence            12278999999999986542   234445533    368999999999986555553 4567788899999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQA  209 (250)
Q Consensus       196 ~~I~~lf~~l~~~i  209 (250)
                      .|++++.+.+....
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=9.2e-17  Score=146.06  Aligned_cols=173  Identities=17%  Similarity=0.085  Sum_probs=104.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccccCCCcccccccc-ccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVEN-FVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~-~~~~~  118 (250)
                      .+|+|+|.+|||||||+| ++.+..... ....+.+.           ..+.+|||+|.+.... .+...+.+. ...++
T Consensus         2 ~~I~ivG~~~vGKStL~n-~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~-~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFN-RLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD-GFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch-hHHHHHHHHHHHHHH
Confidence            369999999999999999 787742211 11222211           1678999999874111 111111111 11223


Q ss_pred             CCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCC
Q psy5810         119 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLV  195 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~  195 (250)
                      ++|++++|+|.+++.+..  .+..|+..       .+.|+++|+||+|+.+.    .....++ ..+++. ++++||++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence            899999999998864432  33445443       27899999999996431    1222222 345664 899999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhhhh-HH-------HHHhhhhhhhhhhhhccCC
Q psy5810         196 YKTDELLVGIARQAGLNKKRNK-LL-------AKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~  238 (250)
                      .|+.++|+++............ ..       .......+.+++++.+..+
T Consensus       148 ~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~  198 (435)
T PRK00093        148 RGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEER  198 (435)
T ss_pred             CCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence            9999999999874322111100 00       0011366777777776543

>KOG0074|consensus

Probab=99.69  E-value=6.3e-17  Score=121.10  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=114.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee--------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF--------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~--------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      +-+.++|+++|-.++|||||+. .+.+. ..+..+|-|..+.        ++.+||.+||.  +.+|..||.        
T Consensus        14 t~rEirilllGldnAGKTT~LK-qL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYye--------   84 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLK-QLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYE--------   84 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHH-HHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhh--------
Confidence            3566889999999999999997 77765 3334555555554        67789999997  899999999        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH----HHHHhCCeEEEEec
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK----LAYAWGVKFVETSV  192 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~~~~~evSa  192 (250)
                        +.|++|+|+|.+|..-|+++..-+-++........+|+++.+||.|+--...+... +..    ..+..-+.+.+|||
T Consensus        85 --nvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eei-a~klnl~~lrdRswhIq~csa  161 (185)
T KOG0074|consen   85 --NVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEI-ALKLNLAGLRDRSWHIQECSA  161 (185)
T ss_pred             --ccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHH-HHhcchhhhhhceEEeeeCcc
Confidence              99999999999999999998877777766555678999999999997433322211 111    11233466889999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      .+++|+.+-.+|+...
T Consensus       162 ls~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  162 LSLEGSTDGSDWVQSN  177 (185)
T ss_pred             ccccCccCcchhhhcC
Confidence            9999999998888754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.69  E-value=1.3e-16  Score=144.77  Aligned_cols=171  Identities=18%  Similarity=0.102  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~  119 (250)
                      ||+|+|++|||||||+| ++++...... ...+.+..           .+.+|||+|....-.. ......+ ...+++.
T Consensus         1 ~i~ivG~~nvGKStL~n-~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFN-RLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG-LDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHH-HHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh-HHHHHHHHHHHHHhh
Confidence            48999999999999999 7887432221 22222211           5789999996411100 0000000 1112238


Q ss_pred             CcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy5810         120 PDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVY  196 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~  196 (250)
                      +|++++|+|..+..+..+  +..|+.+       .+.|+++|+||+|+.+....    ..+ ...+++ +++++||+.|.
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~  146 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGR  146 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCC
Confidence            999999999988644433  3334332       36899999999998643221    122 345566 69999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhHHH---------HHhhhhhhhhhhhhccC
Q psy5810         197 KTDELLVGIARQAGLNKKRNKLLA---------KKQKKMASYINNIKQFK  237 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  237 (250)
                      |+.++++++...+...........         ......+++++++.+..
T Consensus       147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~  196 (429)
T TIGR03594       147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE  196 (429)
T ss_pred             ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence            999999999987754322111110         00135677777777654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.69  E-value=1.5e-16  Score=148.93  Aligned_cols=142  Identities=13%  Similarity=0.129  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc-----cccccc----------cCce----------------eEEEEEeCCCCcc-
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE-----NFVQTY----------HPDV----------------FFIVYSDTNHTQR-  100 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~~~~----------~~~~----------------~~i~i~Dt~g~~~-  100 (250)
                      +|+|+|..++|||||++ +|+....     .+..++          |.++                ..+.+|||+|+.. 
T Consensus         5 Ni~IIGh~d~GKTTL~~-rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLAD-RLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            49999999999999998 7765311     111111          2221                2567999999863 


Q ss_pred             -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                       ..+..++.          .+|++|+|+|+++..+++....|...+.     .++|+++|+||+|+.+..  ......++
T Consensus        84 ~~~v~~~l~----------~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el  146 (595)
T TIGR01393        84 SYEVSRSLA----------ACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEI  146 (595)
T ss_pred             HHHHHHHHH----------hCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHH
Confidence             33344445          8999999999999877777766655431     468999999999986421  12233456


Q ss_pred             HHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         180 AYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      .+.+++.   ++++||++|.|+.++|+++++.+...
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            6666653   89999999999999999999877543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00880 Era_like Era (E

Probab=99.68  E-value=3e-16  Score=121.36  Aligned_cols=145  Identities=19%  Similarity=0.088  Sum_probs=91.9

Q ss_pred             EEcCCCCchhhhchhhhcccccc----ccc-cccCc--------eeEEEEEeCCCCccccCCCcc-ccccccccccCCCc
Q psy5810          56 VHSDTNHTQRCLTSMPFCSQVEN----FVQ-TYHPD--------VFFIVYSDTNHTQRCLTPMPF-CSQVENFVQTYHPD  121 (250)
Q Consensus        56 iiG~~~vGKSsLi~~~~~~~~~~----~~~-~~~~~--------~~~i~i~Dt~g~~~~~~~~~~-~~~~~~~~~~~~ad  121 (250)
                      |+|..|+|||||++ ++.+....    ... +....        ...+.+|||+|.......... ......  .++.+|
T Consensus         1 i~G~~gsGKstl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~--~~~~~d   77 (163)
T cd00880           1 LFGRTNAGKSSLLN-ALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR--VLERAD   77 (163)
T ss_pred             CcCCCCCCHHHHHH-HHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH--HHHhCC
Confidence            58999999999998 77764111    110 11111        115789999997632221110 000000  112799


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH---HHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS---DGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++++|+|.++..+..... |.....    ..+.|+++|+||+|+.........   .........+.+++++||+++.|+
T Consensus        78 ~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  152 (163)
T cd00880          78 LILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI  152 (163)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence            999999999987776654 444432    258999999999998543322111   112233344678999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         199 DELLVGIARQ  208 (250)
Q Consensus       199 ~~lf~~l~~~  208 (250)
                      .++++++.+.
T Consensus       153 ~~l~~~l~~~  162 (163)
T cd00880         153 DELREALIEA  162 (163)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.68  E-value=6.3e-16  Score=129.25  Aligned_cols=146  Identities=15%  Similarity=-0.031  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCccccC--CCccccccccccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~  119 (250)
                      +|+++|.+|||||||++ ++.+......    .|..+..+       .+++|||+|+.+...  ....+.....   .++
T Consensus         2 ~v~lvG~~~~GKStLl~-~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~---~~~   77 (233)
T cd01896           2 RVALVGFPSVGKSTLLS-KLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV---ART   77 (233)
T ss_pred             EEEEECCCCCCHHHHHH-HHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh---hcc
Confidence            58999999999999998 8887422111    12222221       578999999753211  1111111111   128


Q ss_pred             CcEEEEEEeCCCHH-hHHHHHHHHHHH----------------------------------------Hhhh---------
Q psy5810         120 PDVFVIVYSVIERK-TFKKAEDMLKTL----------------------------------------WDSK---------  149 (250)
Q Consensus       120 ad~iilV~D~~~~~-Sf~~~~~~~~~i----------------------------------------~~~~---------  149 (250)
                      +|++++|+|.++++ ..+.+.+.++..                                        .+..         
T Consensus        78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~  157 (233)
T cd01896          78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI  157 (233)
T ss_pred             CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence            99999999998865 333333333211                                        0000         


Q ss_pred             -------------C--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         150 -------------Y--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       150 -------------~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                                   .  ...+|+++|+||+|+.     +.+++..+++.  ..++++||+++.|++++|+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             ccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         0  1236999999999974     34555556553  4589999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=2.4e-16  Score=143.30  Aligned_cols=155  Identities=17%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCcccc--CC--Ccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCL--TP--MPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~--~~--~~~~~~~~~  113 (250)
                      ..++|+++|.+|||||||++ ++++....... ..+.+.           ..+.+|||+|..+..  ..  ..+. ....
T Consensus       172 ~~~~v~ivG~~n~GKStlin-~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~-~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLIN-ALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS-VIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH-HHHH
Confidence            46889999999999999999 77764221111 111111           157799999964211  10  0010 1111


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-HHHHH----hCCeEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-KLAYA----WGVKFV  188 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~  188 (250)
                      ...++.+|++|+|+|++++.+..+.. ++..+.+    .+.|+++|+||+|+.+...  .++.. .+...    ..++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            11223799999999999987776653 3333322    4689999999999853211  11111 11111    246899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++||++|.|+.++|+.+.+......
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999987665433

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.67  E-value=1.7e-16  Score=127.43  Aligned_cols=145  Identities=13%  Similarity=0.004  Sum_probs=88.6

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCCccccCC----Cccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHTQRCLTP----MPFCSQVENF  114 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~----~~~~~~~~~~  114 (250)
                      .+..+|+|+|++|+|||||++ ++.+..  ....++.+.+..        .+.+|||+|.......    ..+......+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLIN-ALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHH-HHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            445669999999999999999 787742  122223333321        4689999995421110    0111111112


Q ss_pred             ccc-CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHHHHhC--CeEEE
Q psy5810         115 VQT-YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLAYAWG--VKFVE  189 (250)
Q Consensus       115 ~~~-~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~~--~~~~e  189 (250)
                      .+. ..++++++|+|.+++.+..+.. ++..+..    .+.|+++++||+|+....  ....++.++.....+  +.+++
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~  169 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL  169 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            111 1468999999999876555542 2233322    468999999999985321  122344555555544  47999


Q ss_pred             EecCCCCCHH
Q psy5810         190 TSVGLVYKTD  199 (250)
Q Consensus       190 vSa~~~~~I~  199 (250)
                      +||++|+|++
T Consensus       170 ~Sa~~g~gi~  179 (179)
T TIGR03598       170 FSSLKKTGID  179 (179)
T ss_pred             EECCCCCCCC
Confidence            9999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=5.7e-16  Score=144.60  Aligned_cols=134  Identities=18%  Similarity=0.159  Sum_probs=91.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccccc----ccCce---------e-EEEEEeCCCCcc--ccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT----YHPDV---------F-FIVYSDTNHTQR--CLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----~~~~~---------~-~i~i~Dt~g~~~--~~~~~~~~~~~~~  113 (250)
                      +..+|+++|..++|||||++ ++.+.  .+...    +..++         . .+.+|||||++.  .++...+.     
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~-~l~~~--~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~-----  157 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLD-SIRKT--KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAK-----  157 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHHhC--CcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhc-----
Confidence            44679999999999999998 77663  22211    11111         1 678999999863  33333444     


Q ss_pred             ccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC------
Q psy5810         114 FVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG------  184 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~------  184 (250)
                           .+|++|+|+|.++   +++++.+.    ..    ...++|+++++||+|+.+.   ..++..+.+...+      
T Consensus       158 -----~aDiaILVVda~dgv~~qT~e~i~----~~----~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~  221 (587)
T TIGR00487       158 -----VTDIVVLVVAADDGVMPQTIEAIS----HA----KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDW  221 (587)
T ss_pred             -----cCCEEEEEEECCCCCCHhHHHHHH----HH----HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhc
Confidence                 7999999999987   34444322    12    1247899999999998542   2344444433332      


Q ss_pred             ---CeEEEEecCCCCCHHHHHHHHHH
Q psy5810         185 ---VKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       185 ---~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                         .+++++||++|.|+.++|+++..
T Consensus       222 ~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       222 GGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CCCceEEEEECCCCCChHHHHHhhhh
Confidence               46999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.67  E-value=4.3e-16  Score=149.29  Aligned_cols=176  Identities=15%  Similarity=0.053  Sum_probs=106.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCccccCCC--ccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQ  116 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~  116 (250)
                      ..+|+|+|++|||||||+| ++++... ...+..|.+..           .+.+|||+|.+......  .+....  ...
T Consensus       275 ~~~V~IvG~~nvGKSSL~n-~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~--~~~  351 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVN-RILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQA--QIA  351 (712)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHH--HHH
Confidence            3569999999999999999 8887422 12223333221           57789999976321110  011000  111


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      +..+|++|+|+|.++.....+ ..|...+..    .+.|+++|+||+|+....   ......+...++ ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence            228999999999987432211 235454432    579999999999985421   111222222222 35799999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhh----hHH-------HHHhhhhhhhhhhhhccCC
Q psy5810         197 KTDELLVGIARQAGLNKKRN----KLL-------AKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~  238 (250)
                      ||.++|++++..+.......    ...       .......+++++++.+.+.
T Consensus       423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~  475 (712)
T PRK09518        423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEER  475 (712)
T ss_pred             CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccc
Confidence            99999999998876532111    000       0011367788888887753

>KOG1707|consensus

Probab=99.66  E-value=1.6e-16  Score=143.12  Aligned_cols=154  Identities=19%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCceeE-------------EEEEeCCCCccccCCCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFF-------------IVYSDTNHTQRCLTPMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~-------------i~i~Dt~g~~~~~~~~~~~~~~~~~  114 (250)
                      .-+.++|+++|+.||||||||- .++.  +.|.+.+.+....             ..|.||+......  ...      .
T Consensus         6 t~kdVRIvliGD~G~GKtSLIm-SL~~--eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~--~~l------~   74 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIM-SLLE--EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR--LCL------R   74 (625)
T ss_pred             CccceEEEEECCCCccHHHHHH-HHHh--hhccccccccCCccccCCccCcCcCceEEEecccccchh--HHH------H
Confidence            3456779999999999999994 8888  7777777766653             3455665332110  000      0


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccCHHH-HHHHHHHhC-Ce-EEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYI-GEKAVILVANKADLERRRQVTHSD-GKKLAYAWG-VK-FVE  189 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~~-~~-~~e  189 (250)
                      ..++.||++.+||+++++++.+.+. .|+..+.+..+. .++|+||||||+|......-+.+. ...+..++. +. .++
T Consensus        75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtcie  154 (625)
T KOG1707|consen   75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIE  154 (625)
T ss_pred             HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHh
Confidence            1223799999999999999999996 699999776433 479999999999986543333233 344444442 33 799


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |||++..++.++|...-+.++-.
T Consensus       155 cSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  155 CSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhhHhhhhhhhheeecc
Confidence            99999999999999998877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=3.2e-15  Score=132.30  Aligned_cols=161  Identities=16%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCcc--ccCC-Cccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQR--CLTP-MPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~-~~~~~~~~~~  114 (250)
                      +.+||+|+|.||||||||+| +++++... ..+..|.|.+           ++.+.||+|.-+  .... ..+.+.....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN-~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLIN-AILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHH-HhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            57999999999999999999 78876222 2222233322           677899999752  1111 2223344455


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-h----CCeEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-W----GVKFVE  189 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~----~~~~~e  189 (250)
                      .++..+|++++|.|.+.+-+-++.+ ....+    .....++++|.||+|+.+....+.++.....+. +    ..+.+.
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i----~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLI----EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHH----HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            5556899999999999987655543 22222    336889999999999865433444444333322 2    356899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      +||++|.++.++|..+.........+-
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcccc
Confidence            999999999999999987665543333

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=135.16  Aligned_cols=173  Identities=18%  Similarity=0.054  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~  119 (250)
                      .|+|+|.||||||||+| |+++.... ..++.|.|..           .+.+.||+|-+..-...+...+.+ ...++..
T Consensus         5 ~VAIVGRPNVGKSTLFN-RL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           5 VVAIVGRPNVGKSTLFN-RLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             EEEEECCCCCcHHHHHH-HHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            49999999999999999 88886332 3344454443           677899999763221222222222 2233448


Q ss_pred             CcEEEEEEeCCCHHhH--HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCC
Q psy5810         120 PDVFVIVYSVIERKTF--KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVY  196 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~  196 (250)
                      ||+++||.|....-+-  +.+.+|+.       ..+.|++||+||+|-..     .++.......+|+. .+.+||..|.
T Consensus        84 ADvilfvVD~~~Git~~D~~ia~~Lr-------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~  151 (444)
T COG1160          84 ADVILFVVDGREGITPADEEIAKILR-------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH-------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhcc
Confidence            9999999999874332  33344444       15799999999999532     22222223345654 8999999999


Q ss_pred             CHHHHHHHHHHHHH-hhhhhhhHH--HHH-------hhhhhhhhhhhhccCC
Q psy5810         197 KTDELLVGIARQAG-LNKKRNKLL--AKK-------QKKMASYINNIKQFKW  238 (250)
Q Consensus       197 ~I~~lf~~l~~~i~-~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~  238 (250)
                      |+.++.+.++..+. .........  .-+       .-+.++.+|++.++-+
T Consensus       152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR  203 (444)
T COG1160         152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER  203 (444)
T ss_pred             CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce
Confidence            99999999999874 221111111  000       0367777777777655

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.64  E-value=8.7e-16  Score=125.85  Aligned_cols=109  Identities=20%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                      ..+.+|||+|++.... .++       ..++.+|++++|+|++++    .+++.+..| .   ..   ...|+++|+||+
T Consensus        83 ~~i~~iDtPG~~~~~~-~~~-------~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~---~~---~~~~iiivvNK~  147 (203)
T cd01888          83 RHVSFVDCPGHEILMA-TML-------SGAAVMDGALLLIAANEPCPQPQTSEHLAAL-E---IM---GLKHIIIVQNKI  147 (203)
T ss_pred             cEEEEEECCChHHHHH-HHH-------HhhhcCCEEEEEEECCCCCCCcchHHHHHHH-H---Hc---CCCcEEEEEEch
Confidence            3678999999763211 111       112268999999999873    344443332 1   11   224799999999


Q ss_pred             CccCCCcc--CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         164 DLERRRQV--THSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       164 Dl~~~~~v--~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      |+.+....  ..++..++.+..   +++++++||++|.|++++|+++.+.+..
T Consensus       148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            98542211  123334444432   5679999999999999999999876654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.63  E-value=1.3e-15  Score=116.56  Aligned_cols=139  Identities=17%  Similarity=0.095  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER  132 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~  132 (250)
                      ||++||+.|||||||++ ++.+....+..|....+.. .+.||||.+-.. +.+|+..+....   +||.+++|.|.+++
T Consensus         3 rimliG~~g~GKTTL~q-~L~~~~~~~~KTq~i~~~~-~~IDTPGEyiE~-~~~y~aLi~ta~---dad~V~ll~dat~~   76 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQ-ALNGEEIRYKKTQAIEYYD-NTIDTPGEYIEN-PRFYHALIVTAQ---DADVVLLLQDATEP   76 (143)
T ss_pred             eEEEECCCCCCHHHHHH-HHcCCCCCcCccceeEecc-cEEECChhheeC-HHHHHHHHHHHh---hCCEEEEEecCCCC
Confidence            59999999999999996 7877544454444444332 347999987332 233332222222   79999999999987


Q ss_pred             HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHHHHHHHH
Q psy5810         133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~lf~~l~  206 (250)
                      .+.-.     ..+...   -+.|+|-|.||+|+... .-..+.++++.+..|+. +|++|+.+|+||+++.++|-
T Consensus        77 ~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   77 RSVFP-----PGFASM---FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CccCC-----chhhcc---cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            54211     111111   35799999999999731 23467788888888886 89999999999999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.63  E-value=1.9e-15  Score=141.51  Aligned_cols=140  Identities=15%  Similarity=0.119  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-cccccc--ccCce-----------eEEEEEeCCCCcccc--CCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQT--YHPDV-----------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~--~~~~~-----------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~  116 (250)
                      .|+++|..++|||||++ +|.+.. +.+...  .+.++           ..+.+||+||.++..  ....+.        
T Consensus         2 ~I~iiG~~d~GKTTLi~-aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~--------   72 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLK-ALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGG--------   72 (581)
T ss_pred             EEEEECCCCCCHHHHHH-HHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhc--------
Confidence            48999999999999998 887531 222211  11221           257799999986322  122233        


Q ss_pred             cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc--CHHHHHHHHHHh----CCe
Q psy5810         117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV--THSDGKKLAYAW----GVK  186 (250)
Q Consensus       117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v--~~~~~~~~~~~~----~~~  186 (250)
                        ++|++++|+|+++   +++++.+. ++    ..   .++| +++|+||+|+.+...+  ..++..++.+..    +++
T Consensus        73 --~aD~aILVVDa~~G~~~qT~ehl~-il----~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~  142 (581)
T TIGR00475        73 --GIDAALLVVDADEGVMTQTGEHLA-VL----DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK  142 (581)
T ss_pred             --cCCEEEEEEECCCCCcHHHHHHHH-HH----HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence              7999999999998   56665543 22    11   3567 9999999998653322  234455666554    468


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         187 FVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       187 ~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++++||++|.|+++++..+...+..
T Consensus       143 ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       143 IFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEEEeCCCCCCchhHHHHHHHHHHh
Confidence            9999999999999999988766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.63  E-value=1.7e-15  Score=118.73  Aligned_cols=147  Identities=14%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc--ccccccccccCcee--------EEEEEeCCCCccccCC----CccccccccccccC-
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS--QVENFVQTYHPDVF--------FIVYSDTNHTQRCLTP----MPFCSQVENFVQTY-  118 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~--~~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~~~-  118 (250)
                      |+++|++|+|||||++ .+.+  .......+.+.+..        .+.+|||+|-.....+    ..+......+...+ 
T Consensus         2 i~l~G~~g~GKTtL~~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           2 IAFAGRSNVGKSSLIN-ALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             EEEEcCCCCCHHHHHH-HHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            8999999999999998 7883  21222222222221        5678999984211000    01111111222211 


Q ss_pred             CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHH--HhCCeEEEEec
Q psy5810         119 HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAY--AWGVKFVETSV  192 (250)
Q Consensus       119 ~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~--~~~~~~~evSa  192 (250)
                      ..+++++++|.++..  ....+.+|+...       ..|+++|+||+|+......  .........+  ....+++++||
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa  153 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS  153 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence            468899999998763  223344555433       4799999999998432111  1122222222  23456899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      +++.++.+++++|.+.
T Consensus       154 ~~~~~~~~l~~~l~~~  169 (170)
T cd01876         154 LKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.62  E-value=2.3e-15  Score=142.80  Aligned_cols=138  Identities=16%  Similarity=0.178  Sum_probs=93.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc------ccccccC---------ceeEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQTYHP---------DVFFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~~~~~---------~~~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      +...|+|+|..++|||||++ ++......      ...+++.         .-..+.+|||||++  ..++..++.    
T Consensus       243 r~p~V~IvGhvdvGKTSLld-~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~----  317 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLD-KIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGAN----  317 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHH-HHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHH----
Confidence            44569999999999999998 77663111      0001111         11367899999986  333344444    


Q ss_pred             cccccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-------HHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-------AYA  182 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-------~~~  182 (250)
                            .+|++|+|+|+++.   ++++.+..    +    ...++|+|+++||+|+.+..   .++..+.       ...
T Consensus       318 ------~aDiaILVVDA~dGv~~QT~E~I~~----~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~  380 (742)
T CHL00189        318 ------VTDIAILIIAADDGVKPQTIEAINY----I----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEK  380 (742)
T ss_pred             ------HCCEEEEEEECcCCCChhhHHHHHH----H----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHh
Confidence                  79999999999884   45544332    2    12478999999999986421   2222222       223


Q ss_pred             hC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         183 WG--VKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       183 ~~--~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ++  ++++++||++|.||.++|+++....
T Consensus       381 ~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        381 WGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            33  6899999999999999999988753

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.62  E-value=3.4e-15  Score=139.21  Aligned_cols=138  Identities=16%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc------ccccccCce-----------------------eEEEEEeCCCCc--c
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQTYHPDV-----------------------FFIVYSDTNHTQ--R  100 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~~~~~~~-----------------------~~i~i~Dt~g~~--~  100 (250)
                      .-|+++|..++|||||++ ++.+....      ...+++.+.                       ..+.+|||+|++  .
T Consensus         5 piV~IiG~~d~GKTSLln-~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLD-KIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CEEEEECCCCCCHHHHHH-HHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            349999999999999998 77763110      111111110                       127799999986  3


Q ss_pred             ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc------
Q psy5810         101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV------  171 (250)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v------  171 (250)
                      .++..++.          .+|++++|+|+++   +++++.+..+     +.   .++|+++++||+|+.+....      
T Consensus        84 ~l~~~~~~----------~aD~~IlVvD~~~g~~~qt~e~i~~l-----~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f  145 (590)
T TIGR00491        84 NLRKRGGA----------LADLAILIVDINEGFKPQTQEALNIL-----RM---YKTPFVVAANKIDRIPGWRSHEGRPF  145 (590)
T ss_pred             HHHHHHHh----------hCCEEEEEEECCcCCCHhHHHHHHHH-----HH---cCCCEEEEEECCCccchhhhccCchH
Confidence            44444555          8999999999997   6666655422     11   37899999999998531100      


Q ss_pred             ------CHHHH------------HHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         172 ------THSDG------------KKLAY------------AW--GVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       172 ------~~~~~------------~~~~~------------~~--~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                            ..+..            .++.+            ++  ..+++++||++|+|+.+++.++...
T Consensus       146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                  00000            01111            12  2579999999999999999988654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.61  E-value=2.5e-15  Score=136.34  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=90.3

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCcee-------
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDVF-------   88 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~~-------   88 (250)
                      .+...++|+++|..++|||||+. +++.......                               ..-+.++.       
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~-~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~   81 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVG-HLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE   81 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHH-HHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence            35566889999999999999998 6764211110                               01122211       


Q ss_pred             ----EEEEEeCCCCccccCC--CccccccccccccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEee
Q psy5810          89 ----FIVYSDTNHTQRCLTP--MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ----~i~i~Dt~g~~~~~~~--~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~n  161 (250)
                          .+.+|||+|+++....  ..+.          .+|++++|+|+++.+++...+. +...+.+.  ....|+++++|
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~----------~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviN  149 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGAS----------QADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAIN  149 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhh----------hCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEE
Confidence                6789999998632211  1122          7999999999999864322111 11112222  12357999999


Q ss_pred             CCCccCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy5810         162 KADLERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELL  202 (250)
Q Consensus       162 K~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf  202 (250)
                      |+|+.+...    ...++...+++..+     ++++++||++|.|+.+.+
T Consensus       150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            999853111    12345666777665     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.60  E-value=6.1e-15  Score=141.01  Aligned_cols=135  Identities=20%  Similarity=0.191  Sum_probs=90.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc--------cccCc-e----eEEEEEeCCCCcc--ccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPD-V----FFIVYSDTNHTQR--CLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~-~----~~i~i~Dt~g~~~--~~~~~~~~~~~~~~  114 (250)
                      +...|+|+|..++|||||++ ++...  .+..        +++.. +    ..+.+|||+|++.  .++...+.      
T Consensus       289 R~pvV~ImGhvd~GKTSLl~-~Lr~~--~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~------  359 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLD-AIRKT--NVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQ------  359 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHHhC--CccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhh------
Confidence            44559999999999999998 77652  1111        11110 0    2678999999863  22222333      


Q ss_pred             cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-------HHHHHhC
Q psy5810         115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-------KLAYAWG  184 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-------~~~~~~~  184 (250)
                          .+|++|||+|.++   +++++.+.    ..    ...++|+|+++||+|+.+..   .+...       .++..++
T Consensus       360 ----~aDiaILVVdAddGv~~qT~e~i~----~a----~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g  424 (787)
T PRK05306        360 ----VTDIVVLVVAADDGVMPQTIEAIN----HA----KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWG  424 (787)
T ss_pred             ----hCCEEEEEEECCCCCCHhHHHHHH----HH----HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhC
Confidence                7899999999988   44544332    11    22578999999999985421   12221       1233444


Q ss_pred             --CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         185 --VKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       185 --~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                        ++++++||++|.||.++|+++...
T Consensus       425 ~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        425 GDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCceEEEEeCCCCCCchHHHHhhhhh
Confidence              679999999999999999998753

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.60  E-value=4e-15  Score=132.00  Aligned_cols=150  Identities=15%  Similarity=0.096  Sum_probs=98.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee------------EEEEEeCCCCccccCCCccccccc-cccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF------------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQ  116 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~------------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~  116 (250)
                      +-+|++|+|.||||||||+| .+++.....++.+..|..            .+.+.||+|....- ...-+-.++ .+.+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLN-aL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLN-ALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHH-HHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc-cHHHHHHHHHHHHH
Confidence            44679999999999999999 888864444444333332            67789999964111 111111111 2233


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      +..||.+++|+|.+.+.+-.+.. .+.     ....+.|+++|.||.|+........     .....+.+++.+||++|.
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGE  362 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCcc
Confidence            34899999999999863222211 111     1236789999999999976332111     111224468999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy5810         197 KTDELLVGIARQAGLN  212 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~  212 (250)
                      |++++.+.+.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999877665

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.60  E-value=6.8e-15  Score=138.01  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc---------ccc------cccCce----------------eEEEEEeCCCCcc-
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQ------TYHPDV----------------FFIVYSDTNHTQR-  100 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~------~~~~~~----------------~~i~i~Dt~g~~~-  100 (250)
                      +|+|+|..++|||||+. +++...+.         +.+      +.+.++                ..+.+|||+|+.. 
T Consensus         9 Ni~IiGhvd~GKTTL~~-rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          9 NFSIIAHIDHGKSTLAD-RLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            49999999999999998 77542111         110      111111                2577999999863 


Q ss_pred             -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                       ..+..++.          .+|++|+|+|.++....+....|.... .    .++|+++|+||+|+.+..  ......++
T Consensus        88 ~~~v~~sl~----------~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~--~~~v~~ei  150 (600)
T PRK05433         88 SYEVSRSLA----------ACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD--PERVKQEI  150 (600)
T ss_pred             HHHHHHHHH----------HCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--HHHHHHHH
Confidence             33344444          799999999999976666666665432 1    468999999999986422  12223445


Q ss_pred             HHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         180 AYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      .+.+++.   ++++||++|.|+.++++++...+...
T Consensus       151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            5555654   89999999999999999999877643

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=1.1e-13  Score=108.61  Aligned_cols=144  Identities=12%  Similarity=0.016  Sum_probs=107.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccc-----------ccc---ccccCcee--------EEEEEeCCCCc--cccC
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----------NFV---QTYHPDVF--------FIVYSDTNHTQ--RCLT  103 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----------~~~---~~~~~~~~--------~i~i~Dt~g~~--~~~~  103 (250)
                      .....||+|+|+.++||||++. .++....           ...   .|...+++        .+.++|||||+  +.+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~-~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVR-ALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHH-HhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            4456789999999999999995 7766411           001   22233333        56788999997  6777


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW  183 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~  183 (250)
                      ..+.+          ++.++|++.|.+++..| .....++.+...   ..+|+++.+||.|+..  ..++++..++.+..
T Consensus        86 ~~l~~----------ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~  149 (187)
T COG2229          86 EILSR----------GAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFD--ALPPEKIREALKLE  149 (187)
T ss_pred             HHHhC----------CcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCC--CCCHHHHHHHHHhc
Confidence            88888          99999999999999998 444555544221   2299999999999976  34566666665544


Q ss_pred             --CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         184 --GVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       184 --~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                        ..+.++++|..+++..+.+..+...
T Consensus       150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         150 LLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCCceeeeecccchhHHHHHHHHHhh
Confidence              7889999999999999988888765

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.54  E-value=6.2e-14  Score=131.15  Aligned_cols=140  Identities=15%  Similarity=0.099  Sum_probs=89.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc------ccccccccCce--------------e---------EEEEEeCCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV------ENFVQTYHPDV--------------F---------FIVYSDTNHTQR  100 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~------~~~~~~~~~~~--------------~---------~i~i~Dt~g~~~  100 (250)
                      +...|+++|..++|||||++ ++.+..      .....+++.+.              .         .+.+|||||++.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~-~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLD-KIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            34459999999999999998 776531      00111221111              0         157899999863


Q ss_pred             --ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc----
Q psy5810         101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV----  171 (250)
Q Consensus       101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----  171 (250)
                        .++...+.          .+|++++|+|.++   +++++.+..+    ..    .++|+++++||+|+......    
T Consensus        84 f~~~~~~~~~----------~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~~~~~~~~~~~  145 (586)
T PRK04004         84 FTNLRKRGGA----------LADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDRIPGWKSTEDA  145 (586)
T ss_pred             HHHHHHHhHh----------hCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCCchhhhhhcCc
Confidence              22233333          7999999999998   6777665422    11    47899999999998421110    


Q ss_pred             --------CHH-----------HHHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         172 --------THS-----------DGKKLAYAW---------------GVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       172 --------~~~-----------~~~~~~~~~---------------~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                              ...           +...+....               .++++++||++|.|+.+++..+...
T Consensus       146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                    000           000111111               2568999999999999999887643

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.54  E-value=4.4e-14  Score=128.19  Aligned_cols=142  Identities=13%  Similarity=0.099  Sum_probs=86.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCcee---------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDVF---------   88 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~~---------   88 (250)
                      ...+.|+++|..++|||||++ +++.......                               ...|.|+.         
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVG-RLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHH-HHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            345789999999999999999 6663211110                               01222221         


Q ss_pred             --EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          89 --FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        89 --~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                        .+.+|||+|++.....+.     ..   ++.+|++++|+|.+++.++... .+++..+ ...  ...|+++++||+|+
T Consensus        83 ~~~i~liDtpG~~~~~~~~~-----~~---~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~--~~~~iivviNK~Dl  151 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMI-----TG---ASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL--GINQLIVAINKMDA  151 (425)
T ss_pred             CeEEEEEECCCcccchhhHh-----hc---hhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc--CCCeEEEEEEcccc
Confidence              678999999753221111     11   1279999999999873222221 1222222 221  22469999999998


Q ss_pred             cCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy5810         166 ERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELL  202 (250)
Q Consensus       166 ~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf  202 (250)
                      .+...    ...++..++++..+     ++++++||++|.|+.+.+
T Consensus       152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            54111    12244555665555     469999999999998754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.54  E-value=6e-14  Score=129.48  Aligned_cols=153  Identities=18%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+|+++|+||||||||+| ++++...+...-.|.|++           ++.+.|.||.+.-.....-...-..|..--++
T Consensus         4 ~~valvGNPNvGKTtlFN-~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~   82 (653)
T COG0370           4 LTVALVGNPNVGKTTLFN-ALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP   82 (653)
T ss_pred             ceEEEecCCCccHHHHHH-HHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence            349999999999999999 899976666666677776           67899999986221111101011111111268


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                      |++|-|.|.+|.+---.+-   -++.+    -+.|++++-|+.|+.+.+.+. -+.+++.+.+|+|.+++||++|.|+++
T Consensus        83 D~ivnVvDAtnLeRnLylt---lQLlE----~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          83 DLIVNVVDATNLERNLYLT---LQLLE----LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CEEEEEcccchHHHHHHHH---HHHHH----cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            9999999999976322221   12222    378899999999986655443 346678889999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy5810         201 LLVGIARQAGLNK  213 (250)
Q Consensus       201 lf~~l~~~i~~~~  213 (250)
                      +...+.+....+.
T Consensus       155 l~~~i~~~~~~~~  167 (653)
T COG0370         155 LKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHhccccc
Confidence            9999886554443

>COG2262 HflX GTPases [General function prediction only]

Probab=99.52  E-value=2.1e-13  Score=119.24  Aligned_cols=151  Identities=20%  Similarity=0.094  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc----cccccccccCceeE--------EEEEeCCCCccccCCCc---cccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVFF--------IVYSDTNHTQRCLTPMP---FCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~~--------i~i~Dt~g~~~~~~~~~---~~~~~~~~~~  116 (250)
                      ..|.++|.+|+|||||+| ++++.    .+..-.|.+|+...        +.+-||.|--+.+.+..   |++..|+.  
T Consensus       193 p~vaLvGYTNAGKSTL~N-~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~--  269 (411)
T COG2262         193 PLVALVGYTNAGKSTLFN-ALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV--  269 (411)
T ss_pred             CeEEEEeeccccHHHHHH-HHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh--
Confidence            449999999999999999 88875    34445666777654        44567888655554443   33344443  


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                       ..||+++.|.|.++|.-.+.+..-..-+ +..+..++|+|+|.||+|+.....     .........-..+.+||++|.
T Consensus       270 -~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         270 -KEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE  342 (411)
T ss_pred             -hcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence             3899999999999997666655443333 223556799999999999643211     111222111148999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy5810         197 KTDELLVGIARQAGLN  212 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~  212 (250)
                      |++.+.+.|...+...
T Consensus       343 gl~~L~~~i~~~l~~~  358 (411)
T COG2262         343 GLDLLRERIIELLSGL  358 (411)
T ss_pred             CHHHHHHHHHHHhhhc
Confidence            9999999999887744

>KOG1423|consensus

Probab=99.51  E-value=5.9e-14  Score=118.05  Aligned_cols=168  Identities=17%  Similarity=0.106  Sum_probs=100.4

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccc-----cccccccCce-------eEEEEEeCCCCc-cccCC--Ccccccc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----NFVQTYHPDV-------FFIVYSDTNHTQ-RCLTP--MPFCSQV  111 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~~~~~~~~-------~~i~i~Dt~g~~-~~~~~--~~~~~~~  111 (250)
                      ...+.+.|+|||.||||||||.| .+++..-     ...+|-....       ..+.++||+|.- +....  +.-.+..
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN-~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTN-QMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhh-HhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            35677889999999999999999 7777411     1111111111       167789999953 11110  1001111


Q ss_pred             -ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC-------------ccC---HH
Q psy5810         112 -ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR-------------QVT---HS  174 (250)
Q Consensus       112 -~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~v~---~~  174 (250)
                       +.+.++-.||++++|+|+++....-. ...+..+.++   ..+|-+||-||.|....+             +++   .+
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence             11223338999999999996332211 1223333333   678999999999974322             111   11


Q ss_pred             HHHHHHH---------HhCC----eEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         175 DGKKLAY---------AWGV----KFVETSVGLVYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       175 ~~~~~~~---------~~~~----~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      ..+++..         ..|+    .+|.+||++|+||+++-++|+.++..........
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~  280 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD  280 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence            1111111         1123    2799999999999999999999988776665543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.51  E-value=5.2e-14  Score=115.72  Aligned_cols=136  Identities=13%  Similarity=0.093  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccc-c------------------------------ccCcee-----------EE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ-T------------------------------YHPDVF-----------FI   90 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~------------------------------~~~~~~-----------~i   90 (250)
                      +|+|+|.+|+|||||++ +++........ .                              .+.++.           .+
T Consensus         1 ~i~iiG~~~~GKStL~~-~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIG-RLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHH-HHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            48999999999999998 66543111110 0                              111111           67


Q ss_pred             EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc
Q psy5810          91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ  170 (250)
Q Consensus        91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  170 (250)
                      .+|||+|+......     +..   .++.+|++++|+|.++...-+. ......+ ...  ...++|+|.||+|+.+...
T Consensus        80 ~liDTpG~~~~~~~-----~~~---~~~~ad~~llVvD~~~~~~~~~-~~~~~~~-~~~--~~~~iIvviNK~D~~~~~~  147 (208)
T cd04166          80 IIADTPGHEQYTRN-----MVT---GASTADLAILLVDARKGVLEQT-RRHSYIL-SLL--GIRHVVVAVNKMDLVDYSE  147 (208)
T ss_pred             EEEECCcHHHHHHH-----HHH---hhhhCCEEEEEEECCCCccHhH-HHHHHHH-HHc--CCCcEEEEEEchhcccCCH
Confidence            89999997531111     111   1127999999999987532111 1111112 111  2245788999999854211


Q ss_pred             c----CHHHHHHHHHHhCC---eEEEEecCCCCCHHHH
Q psy5810         171 V----THSDGKKLAYAWGV---KFVETSVGLVYKTDEL  201 (250)
Q Consensus       171 v----~~~~~~~~~~~~~~---~~~evSa~~~~~I~~l  201 (250)
                      -    ...+..++.+.++.   +++++||++|.|+.+.
T Consensus       148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            1    12344455566664   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.51  E-value=5.8e-14  Score=126.56  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=91.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-ccccc---------------------ccc------C------------ceeEE
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQ---------------------TYH------P------------DVFFI   90 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~---------------------~~~------~------------~~~~i   90 (250)
                      .++|+++|..++|||||+. ++.+.. +....                     +.+      .            ....+
T Consensus         4 ~~~i~iiG~~~~GKSTL~~-~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTK-ALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             eEEEEEEccCCCCHHHHHH-HHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            4679999999999999997 775420 00000                     000      0            02367


Q ss_pred             EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .+|||+|+++....+ +.    .   +..+|++++|+|.++.    ++.+.+.    .+ ...  ...|+++++||+|+.
T Consensus        83 ~liDtPGh~~f~~~~-~~----g---~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l-~~~--gi~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHETLMATM-LS----G---AALMDGALLVIAANEPCPQPQTKEHLM----AL-EII--GIKNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHHHHHHHH-HH----H---HHHCCEEEEEEECCCCccccchHHHHH----HH-HHc--CCCeEEEEEEccccC
Confidence            899999986432211 11    1   1168999999999964    3333332    22 111  234689999999986


Q ss_pred             CCCc--cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         167 RRRQ--VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       167 ~~~~--v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +...  ...++..++.+..   +++++++||++|.|+++++++|...+.
T Consensus       148 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       148 SKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4221  1123444444433   578999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.50  E-value=1.3e-13  Score=129.56  Aligned_cols=141  Identities=12%  Similarity=0.129  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccc-ccccccc--ccCcee------------EEEEEeCCCCccccCCCcccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQT--YHPDVF------------FIVYSDTNHTQRCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~--~~~~~~------------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~  117 (250)
                      -|+++|..++|||||++ ++.+. .+.+...  .+.|++            .+.+|||||+++....     +...   +
T Consensus         2 ii~~~GhvdhGKTtLi~-aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~-----m~~g---~   72 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQ-AITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN-----MLAG---V   72 (614)
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH-----HHHH---h
Confidence            48999999999999998 88753 1222222  233322            4679999998643211     1111   1


Q ss_pred             CCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC--HHHHHHHHHHhC---CeEE
Q psy5810         118 YHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT--HSDGKKLAYAWG---VKFV  188 (250)
Q Consensus       118 ~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~  188 (250)
                      .++|++++|+|.++   +.+.+.+. ++.    .   .++| +++|.||+|+.+...+.  .++..++....+   .+++
T Consensus        73 ~~~D~~lLVVda~eg~~~qT~ehl~-il~----~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii  144 (614)
T PRK10512         73 GGIDHALLVVACDDGVMAQTREHLA-ILQ----L---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLF  144 (614)
T ss_pred             hcCCEEEEEEECCCCCcHHHHHHHH-HHH----H---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence            17999999999987   45555442 222    1   2355 68999999985422221  234455555544   5799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ++||++|.|++++++.|.....
T Consensus       145 ~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        145 VTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhc
Confidence            9999999999999999986543

>KOG0077|consensus

Probab=99.48  E-value=8.3e-14  Score=107.14  Aligned_cols=145  Identities=14%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.-|++++|..|+|||||++ .+-+ ......+|.+|+-+       +++..|.+|..  +..|..|+-          .
T Consensus        19 K~gKllFlGLDNAGKTTLLH-MLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~----------~   87 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLH-MLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFP----------Q   87 (193)
T ss_pred             cCceEEEEeecCCchhhHHH-HHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHh----------h
Confidence            34569999999999999998 3443 25567889999887       56668999954  777888888          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH------HHHhC---------
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL------AYAWG---------  184 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~---------  184 (250)
                      +|++++.+|..|.+-|.+.+.-++.+.......++|+++.+||+|.+..  .++++.+..      +...+         
T Consensus        88 v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~  165 (193)
T KOG0077|consen   88 VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNV  165 (193)
T ss_pred             hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCC
Confidence            9999999999999999998887777766655678999999999998753  344443221      11111         


Q ss_pred             --CeEEEEecCCCCCHHHHHHHHHH
Q psy5810         185 --VKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       185 --~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                        +..+-||...+.+--+.|.|+..
T Consensus       166 rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  166 RPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             CeEEEEEEEEEccCccceeeeehhh
Confidence              23577888888887788887764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.48  E-value=1.7e-13  Score=110.81  Aligned_cols=146  Identities=17%  Similarity=0.116  Sum_probs=89.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccc------------------cccc-------------CceeEEEEEeCCCCc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV------------------QTYH-------------PDVFFIVYSDTNHTQ   99 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~------------------~~~~-------------~~~~~i~i~Dt~g~~   99 (250)
                      .+.|+++|..++|||||+. +++.......                  ...+             .....+.++||||..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLG-ALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeech-hhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4569999999999999998 6664311100                  0001             111267889999975


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHH-
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGK-  177 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~-  177 (250)
                      ...     ..+..   .+..+|++|+|.|..+...... .+.+..+..    .++|++++.||+|+...+. -..++.. 
T Consensus        82 ~f~-----~~~~~---~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~  148 (188)
T PF00009_consen   82 DFI-----KEMIR---GLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKE  148 (188)
T ss_dssp             HHH-----HHHHH---HHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred             cee-----ecccc---eecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHHHHHHHHH
Confidence            311     11111   1227999999999987543322 222333322    4788999999999852110 0011122 


Q ss_pred             HHHHHh------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         178 KLAYAW------GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       178 ~~~~~~------~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      .+.+..      .++++++||++|.|+.++++.+.+.++
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            333333      257999999999999999999987653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.48  E-value=1.6e-13  Score=102.72  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccccccc-CceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVI  130 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~  130 (250)
                      +||+++|+.|||||+|+. ++..  ..|...+. ++++          ...+...+++          .++++++||+.+
T Consensus         1 ~kvv~~G~~gvGKt~l~~-~~~~--~~~~~~~~~~t~~----------~~~~~~~~~~----------s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSA-RFVQ--FPFDYVPTVFTIG----------IDVYDPTSYE----------SFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHH-HHhc--CCccccCceehhh----------hhhccccccC----------CCCEEEEEEEcc
Confidence            379999999999999997 7866  44443322 2322          3334456666          899999999999


Q ss_pred             CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       131 ~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      ++++++.+  |...+... ...+.|.++++||.|+.+.+.+..+++        ..|+++|++++.|+.
T Consensus        58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            99999876  87776543 345788999999999854334444333        345678889999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.48  E-value=1.8e-13  Score=128.23  Aligned_cols=144  Identities=16%  Similarity=0.081  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCcc--ccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQR--CLT  103 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~~--~~~  103 (250)
                      .|+|+|..++|||||+. +++...+.+..                ..+.++.           ++.+|||||...  ...
T Consensus         3 NIaIiGHvd~GKTTLv~-~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVD-ALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             EEEEEcCCCCCHHHHHH-HHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            39999999999999998 77653222211                1223332           678999999853  222


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHH-
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAY-  181 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~-  181 (250)
                      ..++.          .+|++++|+|.++.. ......|+..+..    .++|+++++||+|+.+.+.. ..++...+.. 
T Consensus        82 ~~~l~----------~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~  146 (594)
T TIGR01394        82 ERVLG----------MVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAE  146 (594)
T ss_pred             HHHHH----------hCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence            33344          799999999998742 3344566666644    46899999999998653321 1233333332 


Q ss_pred             ------HhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhh
Q psy5810         182 ------AWGVKFVETSVGLVY----------KTDELLVGIARQAGLN  212 (250)
Q Consensus       182 ------~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~  212 (250)
                            ...++++++||++|.          |+..+|+.++..+...
T Consensus       147 ~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       147 LGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             hccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence                  235789999999996          7999999999877644

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.47  E-value=6.2e-13  Score=108.45  Aligned_cols=148  Identities=13%  Similarity=0.046  Sum_probs=86.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc--cc---c----cccC------ceeEEEEEeCCCCccccC--CCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN--FV---Q----TYHP------DVFFIVYSDTNHTQRCLT--PMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~---~----~~~~------~~~~i~i~Dt~g~~~~~~--~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||+| .+.+....  ..   .    +...      ....+.+|||+|......  ..|..     .
T Consensus         2 ~kI~i~G~~g~GKSSLin-~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~-----~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFIN-ALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE-----E   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHH-HHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH-----H
Confidence            679999999999999998 77763110  00   0    1000      012578999999742111  11111     1


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC-Cc---c---CHHH----HHHHHH-
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR-RQ---V---THSD----GKKLAY-  181 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~---v---~~~~----~~~~~~-  181 (250)
                      ..+.++|++++|.|-    +|.... .|++.+.+.    ..|+++|+||+|+... ..   .   ..++    ..+.+. 
T Consensus        76 ~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~  147 (197)
T cd04104          76 MKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE  147 (197)
T ss_pred             hCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence            112278998888432    233333 455555432    5799999999998321 10   0   1111    111221 


Q ss_pred             ---HhC--C-eEEEEecC--CCCCHHHHHHHHHHHHHhhh
Q psy5810         182 ---AWG--V-KFVETSVG--LVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       182 ---~~~--~-~~~evSa~--~~~~I~~lf~~l~~~i~~~~  213 (250)
                         ..+  . +++.+|+.  .+.++..+.+.++..+.+.+
T Consensus       148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence               212  2 48999998  57899999999998887643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.46  E-value=3.6e-13  Score=121.51  Aligned_cols=145  Identities=14%  Similarity=0.142  Sum_probs=91.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-ccccc------ccccC---------------------c------------eeE
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV------QTYHP---------------------D------------VFF   89 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~------~~~~~---------------------~------------~~~   89 (250)
                      ..++|+++|..++|||||+. ++.+. .+...      .|+..                     .            ...
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~-~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQ-ALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHH-HhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            44779999999999999996 67442 00000      00000                     0            136


Q ss_pred             EEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          90 IVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        90 i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      +.+|||+|++.... .++.       .+..+|++++|+|++++    ++.+.+..| .   ..   ...|+++|+||+|+
T Consensus        87 i~liDtPG~~~f~~-~~~~-------~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~---~~---~i~~iiVVlNK~Dl  151 (411)
T PRK04000         87 VSFVDAPGHETLMA-TMLS-------GAALMDGAILVIAANEPCPQPQTKEHLMAL-D---II---GIKNIVIVQNKIDL  151 (411)
T ss_pred             EEEEECCCHHHHHH-HHHH-------HHhhCCEEEEEEECCCCCCChhHHHHHHHH-H---Hc---CCCcEEEEEEeecc
Confidence            78999999864321 2222       11257999999999953    344433321 1   11   22468999999998


Q ss_pred             cCCCcc--CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         166 ERRRQV--THSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       166 ~~~~~v--~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      .+....  ..++...+++..   +.+++++||++|.|++++++.|...+.
T Consensus       152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            543221  123444444432   478999999999999999999987664

>KOG1489|consensus

Probab=99.45  E-value=1e-12  Score=111.25  Aligned_cols=143  Identities=17%  Similarity=0.140  Sum_probs=100.7

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCc------cccCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQ------RCLTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~------~~~~~~~~~~~~~~~~  115 (250)
                      |.+||-||+|||||++ .+......    .-+|..|.++        .+.+-|.||.-      +.+...|++ ++|   
T Consensus       199 vGLVG~PNAGKSTLL~-als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr-HiE---  273 (366)
T KOG1489|consen  199 VGLVGFPNAGKSTLLN-ALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR-HIE---  273 (366)
T ss_pred             cceecCCCCcHHHHHH-HhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH-HHH---
Confidence            8999999999999998 88776332    2244445444        45677888853      344444443 333   


Q ss_pred             ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810         116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDS-KYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET  190 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev  190 (250)
                         .++.+++|.|++.+   .-++.++....++..+ ....+.|.++|+||+|+++..   ..-..++++...-+ ++++
T Consensus       274 ---R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pv  347 (366)
T KOG1489|consen  274 ---RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPV  347 (366)
T ss_pred             ---hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEe
Confidence               48999999999998   7777777766666554 234678999999999985311   11135566665544 9999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIAR  207 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~  207 (250)
                      ||+.++++.++++-|-+
T Consensus       348 sA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  348 SAKSGEGLEELLNGLRE  364 (366)
T ss_pred             eeccccchHHHHHHHhh
Confidence            99999999998877643

>PRK10218 GTP-binding protein; Provisional

Probab=99.44  E-value=6.7e-13  Score=124.37  Aligned_cols=145  Identities=14%  Similarity=0.039  Sum_probs=94.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCcc--cc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQR--CL  102 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~~--~~  102 (250)
                      -+|+|+|..++|||||++ +|+.....+..                +.+.++.           .+.+|||+|+..  ..
T Consensus         6 RnIaIiGh~d~GKTTLv~-~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVD-KLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             eEEEEECCCCCcHHHHHH-HHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            359999999999999998 77753222221                2222322           677999999853  33


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAY  181 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~  181 (250)
                      +..+++          .+|++|+|+|.++....+. ..++..+..    .++|.+++.||+|+.+.+.- ..++...+..
T Consensus        85 v~~~l~----------~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~  149 (607)
T PRK10218         85 VERVMS----------MVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFV  149 (607)
T ss_pred             HHHHHH----------hCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence            344445          8999999999987543322 333333322    47889999999998643211 1123333321


Q ss_pred             -------HhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhh
Q psy5810         182 -------AWGVKFVETSVGLVY----------KTDELLVGIARQAGLN  212 (250)
Q Consensus       182 -------~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~  212 (250)
                             ...++++.+||++|.          ++..+++.++..+...
T Consensus       150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence                   134779999999998          5888888877776543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.44  E-value=7.8e-13  Score=105.84  Aligned_cols=150  Identities=15%  Similarity=0.052  Sum_probs=96.4

Q ss_pred             EEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCC-ccc---cCCCccccccccccccC-
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHT-QRC---LTPMPFCSQVENFVQTY-  118 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~-~~~---~~~~~~~~~~~~~~~~~-  118 (250)
                      |+++|.+||||||||| .+++..  .....+.|.|..        .+.+.|.||- +-.   -...-...++++|.+.+ 
T Consensus        27 IaF~GRSNVGKSSlIN-~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~  105 (200)
T COG0218          27 IAFAGRSNVGKSSLIN-ALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA  105 (200)
T ss_pred             EEEEccCcccHHHHHH-HHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence            9999999999999999 898853  456667777654        3678899983 100   00111223444444443 


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh----CCe--EEEEec
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW----GVK--FVETSV  192 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~--~~evSa  192 (250)
                      +-.+++++.|+..+..-.+. ++++.+.+    .++|+++|+||+|........ ......++..    ...  ++..|+
T Consensus       106 ~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss  179 (200)
T COG0218         106 NLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSS  179 (200)
T ss_pred             hheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEec
Confidence            56788999999886544332 23333322    489999999999964422211 1112223222    222  788999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQAG  210 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~  210 (250)
                      .++.|++++...|...+.
T Consensus       180 ~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         180 LKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccccCHHHHHHHHHHHhh
Confidence            999999999988887654

>cd04167 Snu114p Snu114p subfamily

Probab=99.43  E-value=4.8e-13  Score=110.38  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc-------------ccc------cccCc----------------eeEEEEEeCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN-------------FVQ------TYHPD----------------VFFIVYSDTNH   97 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~-------------~~~------~~~~~----------------~~~i~i~Dt~g   97 (250)
                      +|+|+|..|+|||||+. +++.....             +.+      ..+.+                ...+.+|||+|
T Consensus         2 nv~iiG~~~~GKTtL~~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           2 NVAIAGHLHHGKTSLLD-MLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             cEEEEcCCCCCHHHHHH-HHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            38999999999999998 67652110             000      01111                12578999999


Q ss_pred             Cccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          98 TQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        98 ~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      +...  ....++.          .+|++++|+|.++..++.. ..|+.....    .+.|+++|+||+|+.
T Consensus        81 ~~~f~~~~~~~~~----------~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFMDEVAAALR----------LSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CcchHHHHHHHHH----------hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            8632  2233344          7999999999998776643 345554432    358999999999973

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.40  E-value=3e-12  Score=109.56  Aligned_cols=152  Identities=22%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCc------cccCCCcccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQ------RCLTPMPFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~------~~~~~~~~~~~~~~~~  115 (250)
                      |.++|-||+||||||+ .+......    .-+|..|..+        .+.+-|.||--      ..+...|++ ++|+  
T Consensus       162 VGLVG~PNaGKSTlls-~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr-HIER--  237 (369)
T COG0536         162 VGLVGLPNAGKSTLLS-AVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR-HIER--  237 (369)
T ss_pred             cccccCCCCcHHHHHH-HHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH-HHHh--
Confidence            8899999999999997 77776332    2245555555        35567888742      344444444 4444  


Q ss_pred             ccCCCcEEEEEEeCCCHHh---HHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810         116 QTYHPDVFVIVYSVIERKT---FKKAEDMLKTLWDS-KYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET  190 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~S---f~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev  190 (250)
                          +.++++|.|++..+-   .++......++.++ ....+.|.+||+||+|+....+-.......+.+..++. .+.+
T Consensus       238 ----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I  313 (369)
T COG0536         238 ----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI  313 (369)
T ss_pred             ----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence                889999999986542   45555555666555 23457899999999996432222222233344444554 2229


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ||.++.|++++...+.+.+.+..
T Consensus       314 Sa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         314 SALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ehhcccCHHHHHHHHHHHHHHhh
Confidence            99999999999999998877665

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.39  E-value=5.7e-12  Score=104.72  Aligned_cols=107  Identities=19%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+.+.||||.++......     .... .+.+|++++|.|.++...-. ...++..+..    .++|+++|.||+|+.+.
T Consensus        85 ~i~liDtpG~~~~~~~~~-----~~~~-~~~~D~~llVvda~~g~~~~-d~~~l~~l~~----~~ip~ivvvNK~D~~~~  153 (224)
T cd04165          85 LVTFIDLAGHERYLKTTL-----FGLT-GYAPDYAMLVVAANAGIIGM-TKEHLGLALA----LNIPVFVVVTKIDLAPA  153 (224)
T ss_pred             EEEEEECCCcHHHHHHHH-----Hhhc-ccCCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEECccccCH
Confidence            467889999763221110     0000 01589999999987754322 2333443322    46899999999997432


Q ss_pred             Ccc--CHHHHHHHHH--------------------------HhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810         169 RQV--THSDGKKLAY--------------------------AWGVKFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       169 ~~v--~~~~~~~~~~--------------------------~~~~~~~evSa~~~~~I~~lf~~l~  206 (250)
                      ..+  ..++..++.+                          ....|++.+||.+|.|++++...|.
T Consensus       154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            211  1112222221                          1123799999999999999887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.39  E-value=3.3e-12  Score=107.03  Aligned_cols=97  Identities=13%  Similarity=0.060  Sum_probs=64.7

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce-----------eEEEEEeCCCCcc--cc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV-----------FFIVYSDTNHTQR--CL  102 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~-----------~~i~i~Dt~g~~~--~~  102 (250)
                      |+++|..|+|||||++ +++.....            +.+      ..+.++           .++.+|||+|+..  ..
T Consensus         2 i~i~G~~~~GKTtL~~-~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           2 IGILAHVDAGKTTLTE-SLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             EEEEcCCCCCHHHHHH-HHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            8999999999999998 66542110            000      111111           1678999999852  22


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      +..+++          .+|++++|+|.++.... ....|+..+.+    .++|+++++||+|+.
T Consensus        81 ~~~~l~----------~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLS----------VLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHH----------HhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence            233344          79999999999986543 33445554433    478999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.38  E-value=2.8e-12  Score=107.99  Aligned_cols=116  Identities=19%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK  178 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  178 (250)
                      ..+.+.++.          ++|++++|||++++. ||+.+..|+..+..    .++|+++|+||+||.+.+.+..+++..
T Consensus        27 ~~L~r~~~~----------n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~   92 (245)
T TIGR00157        27 NELTRPIVA----------NIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDI   92 (245)
T ss_pred             ceEECcccc----------cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHH
Confidence            445555666          999999999999887 99999999986632    679999999999996655555455555


Q ss_pred             HHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         179 LAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       179 ~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      +. ..+++++++||++|.|++++|..+...+.--      ...+....++.++.+.++
T Consensus        93 ~~-~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~------~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157        93 YR-NIGYQVLMTSSKNQDGLKELIEALQNRISVF------AGQSGVGKSSLINALDPS  143 (245)
T ss_pred             HH-HCCCeEEEEecCCchhHHHHHhhhcCCEEEE------ECCCCCCHHHHHHHHhhh
Confidence            54 5788999999999999999999887532211      111223445666666554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1532|consensus

Probab=99.38  E-value=1.3e-11  Score=102.70  Aligned_cols=139  Identities=17%  Similarity=0.072  Sum_probs=81.5

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      +..+.|||||-..++..-....+-+..+.....++++|.|..+   +.+|-.=.-+.-.|   .+....|+|++.||+|+
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi---lyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI---LYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH---HHhccCCeEEEEecccc
Confidence            3568999999755444433333333333235678888888644   55664322222222   23368999999999998


Q ss_pred             cCCCccCHHH------HHHHHH-------------------H--hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         166 ERRRQVTHSD------GKKLAY-------------------A--WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       166 ~~~~~v~~~~------~~~~~~-------------------~--~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      .... .-.+.      .++-.+                   +  .++..+-+|+.+|.|.+++|..+...+.+.......
T Consensus       194 ~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp  272 (366)
T KOG1532|consen  194 SDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKP  272 (366)
T ss_pred             cccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            5421 11111      110011                   0  135689999999999999999999887776555555


Q ss_pred             HHHHhhhhhhhhh
Q psy5810         219 LAKKQKKMASYIN  231 (250)
Q Consensus       219 ~~~~~~~~~~~~~  231 (250)
                      ...+.+..++...
T Consensus       273 ~~Ek~k~~k~~~e  285 (366)
T KOG1532|consen  273 EYEKKKAEKRLAE  285 (366)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444333333333

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.36  E-value=5.7e-12  Score=104.73  Aligned_cols=154  Identities=16%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             EEEEEcCCCCchhhhchhhhccc----cccccccccCcee--------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      ||+++|.+++||||+.+.-|.+.    +....+|...+..        .+.+||.+||...... ++....+...+  ++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-~~~~~~~~if~--~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-YFNSQREEIFS--NV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-THTCCHHHHHC--TE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc-cccccHHHHHh--cc
Confidence            79999999999999985223221    1112233322222        6789999999743322 21212222111  89


Q ss_pred             cEEEEEEeCCCHH---hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccC----HHHHHHHHHHhC---CeEE
Q psy5810         121 DVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER--RRQVT----HSDGKKLAYAWG---VKFV  188 (250)
Q Consensus       121 d~iilV~D~~~~~---Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~----~~~~~~~~~~~~---~~~~  188 (250)
                      .++|+|+|+.+.+   .+..+...+..+.+.  .+++.+-+..+|.|+..  .+...    .+...+.+...+   +.++
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~  155 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFF  155 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEE
Confidence            9999999998443   444455566666554  47888999999999732  12111    122333444555   6677


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      .+|.-+ ..+.+.|..++..+...
T Consensus       156 ~TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  156 LTSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             EE-TTS-THHHHHHHHHHHTTSTT
T ss_pred             eccCcC-cHHHHHHHHHHHHHccc
Confidence            777666 69999999999887643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.34  E-value=5.2e-12  Score=109.95  Aligned_cols=56  Identities=21%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             CCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHH-HHHHHHHhh
Q psy5810         153 EKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVGLVYKTDELLV-GIARQAGLN  212 (250)
Q Consensus       153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~~~~~I~~lf~-~l~~~i~~~  212 (250)
                      ..|+|+|+||.|+......    ...+.... ...++.+||+.+.++.++.+ .++..+...
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         214 SKPMVIAANKADIPDAENN----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             CCcEEEEEEHHHccChHHH----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            4799999999997432111    11222233 45699999999999999998 588877553

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.34  E-value=2.5e-12  Score=106.62  Aligned_cols=99  Identities=18%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-------hHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-------TFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-------Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .+.+|||+|..... ...+    .   .+..+|++|+|+|.++..       ..+....|. .. ..  ....|+++++|
T Consensus        78 ~i~liDtpG~~~~~-~~~~----~---~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~~iiivvN  145 (219)
T cd01883          78 RFTILDAPGHRDFV-PNMI----T---GASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LA-RT--LGVKQLIVAVN  145 (219)
T ss_pred             EEEEEECCChHHHH-HHHH----H---HhhhCCEEEEEEECCCCccccccccccchHHHHH-HH-HH--cCCCeEEEEEE
Confidence            67889999975221 1111    1   112699999999999842       111222222 12 11  12368999999


Q ss_pred             CCCccCC--CccC----HHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy5810         162 KADLERR--RQVT----HSDGKKLAYAWG-----VKFVETSVGLVYKTD  199 (250)
Q Consensus       162 K~Dl~~~--~~v~----~~~~~~~~~~~~-----~~~~evSa~~~~~I~  199 (250)
                      |+|+...  ..-.    .++...+.+..+     ++++++||++|.||.
T Consensus       146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         146 KMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            9998631  1000    112222334443     569999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=105.66  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-------eEEEEEeCCCCc-cccCCCcccccccc--cccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-------FFIVYSDTNHTQ-RCLTPMPFCSQVEN--FVQT  117 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-------~~i~i~Dt~g~~-~~~~~~~~~~~~~~--~~~~  117 (250)
                      ..|+|.|.||||||||++ .+........    +|-+..+       ..+|+.||||-- +.+..+.   .+|.  ..++
T Consensus       169 pTivVaG~PNVGKSSlv~-~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN---~IE~qAi~AL  244 (346)
T COG1084         169 PTIVVAGYPNVGKSSLVR-KLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN---EIERQAILAL  244 (346)
T ss_pred             CeEEEecCCCCcHHHHHH-HHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc---HHHHHHHHHH
Confidence            349999999999999996 7877533322    1222222       288999999964 3332221   1121  1111


Q ss_pred             C-CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecC
Q psy5810         118 Y-HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVG  193 (250)
Q Consensus       118 ~-~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~  193 (250)
                      + =+++++|++|.+...  +.+.-...+.++....   +.|+++|.||.|+.....+  +++......-+.. ...+++.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            1 368899999998754  5666666777776553   4899999999998643333  3333334444444 7788889


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      .+.+++.+-..+...+.+
T Consensus       320 ~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         320 KGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ehhhHHHHHHHHHHHhhc
Confidence            888888877777665443

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.30  E-value=2.9e-11  Score=98.45  Aligned_cols=134  Identities=13%  Similarity=0.128  Sum_probs=80.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-----c---c--------cccccCce-----------eEEEEEeCCCCccccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-----N---F--------VQTYHPDV-----------FFIVYSDTNHTQRCLT  103 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~---~--------~~~~~~~~-----------~~i~i~Dt~g~~~~~~  103 (250)
                      ++.|+++|..++|||||++ +++....     .   +        ...-+.++           ..+.+.||||....+ 
T Consensus         2 ~~ni~iiGh~~~GKTTL~~-~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~-   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTA-AITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI-   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH-
Confidence            3679999999999999998 6654200     0   0        00111111           156789999975211 


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHHHHHH
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSDGKKL  179 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~  179 (250)
                          .   +....+..+|++++|+|.+....-+ ....+..+.+    .++| +|++.||+|+......   ..++...+
T Consensus        80 ----~---~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~  147 (195)
T cd01884          80 ----K---NMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVREL  147 (195)
T ss_pred             ----H---HHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHH
Confidence                1   1111223799999999998743222 2223333322    3566 7889999998432211   12344555


Q ss_pred             HHHhC-----CeEEEEecCCCCCH
Q psy5810         180 AYAWG-----VKFVETSVGLVYKT  198 (250)
Q Consensus       180 ~~~~~-----~~~~evSa~~~~~I  198 (250)
                      ....+     ++++++||++|.|+
T Consensus       148 l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         148 LSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHhcccccCCeEEEeeCccccCC
Confidence            55444     57999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09866 hypothetical protein; Provisional

Probab=99.29  E-value=6.1e-11  Score=109.67  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc
Q psy5810          91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ  170 (250)
Q Consensus        91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  170 (250)
                      .+.||||-........-..+.+   ++.++|++++|.|.++..+..+ ...++.+.+.  ....|+++|.||+|+.+...
T Consensus       233 IFVDTPGIhk~~~~~L~k~M~e---qL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        233 TLLDTPGPNEAGQPHLQKMLNQ---QLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             EEEECCCCCCccchHHHHHHHH---HHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCccc
Confidence            3568888653211111111112   2448999999999988544433 1233333322  11369999999999853222


Q ss_pred             cCHHHHHHHHHHh----CC---eEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCCc
Q psy5810         171 VTHSDGKKLAYAW----GV---KFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWF  239 (250)
Q Consensus       171 v~~~~~~~~~~~~----~~---~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (250)
                      -..+....+....    ++   .++++||++|.|+++++..+...=.-.      .....+-+.++....+|+.|+
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~------~~~~~~wv~dfa~~~~gr~w~  376 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLP------PPEQQRWVEDFAHAALGRRWR  376 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCC------chhhhHHHHHHHHHHhccccc
Confidence            2345555554322    22   489999999999999998887521101      111123466777788888774

>KOG1191|consensus

Probab=99.29  E-value=6.5e-12  Score=111.82  Aligned_cols=163  Identities=17%  Similarity=0.086  Sum_probs=100.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCcc-ccCCCccccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQR-CLTPMPFCSQVENFVQ  116 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~-~~~~~~~~~~~~~~~~  116 (250)
                      ..++|+|+|.||||||||+| .+.+..-... +..|.|.+           ++.+.||+|--+ .--...-........+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlN-aL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLN-ALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHH-HHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            34669999999999999999 8887633322 22333322           788999999643 1111111122233344


Q ss_pred             cCCCcEEEEEEeC--CCHHhHHHHHHHHHHHHhh-----hCCCCCcEEEEeeCCCccCC-CccCHHHHHHHHHHhC---C
Q psy5810         117 TYHPDVFVIVYSV--IERKTFKKAEDMLKTLWDS-----KYIGEKAVILVANKADLERR-RQVTHSDGKKLAYAWG---V  185 (250)
Q Consensus       117 ~~~ad~iilV~D~--~~~~Sf~~~~~~~~~i~~~-----~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~---~  185 (250)
                      +..||++++|+|.  ++-++-..+.+.+......     +.....|++++.||.|+... .+... ....+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCccc
Confidence            5589999999999  5544444444444444221     11234789999999998542 11111 0111222222   3


Q ss_pred             e-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         186 K-FVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       186 ~-~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      + ..++|+++++++..+.+.+.+.+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 5679999999999999999988776544

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.29  E-value=1e-10  Score=99.56  Aligned_cols=149  Identities=17%  Similarity=0.027  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      .+++||.|+||||||++ .+.+......+....|.+           .+|+.|+||-.......--+ ..+..-.+|+||
T Consensus        65 ~v~lVGfPsvGKStLL~-~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr-G~~vlsv~R~AD  142 (365)
T COG1163          65 TVALVGFPSVGKSTLLN-KLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR-GRQVLSVARNAD  142 (365)
T ss_pred             EEEEEcCCCccHHHHHH-HHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC-cceeeeeeccCC
Confidence            39999999999999998 888864433322222221           79999999864221111100 111111234899


Q ss_pred             EEEEEEeCCCHHh-HHHHHHHHHHHH----------------------------------------hhhC----------
Q psy5810         122 VFVIVYSVIERKT-FKKAEDMLKTLW----------------------------------------DSKY----------  150 (250)
Q Consensus       122 ~iilV~D~~~~~S-f~~~~~~~~~i~----------------------------------------~~~~----------  150 (250)
                      ++++|.|+..+.+ .+-+...+....                                        ....          
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            9999999987654 333332222211                                        0000          


Q ss_pred             --------------CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         151 --------------IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       151 --------------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                                    -..+|.+.|.||.|+..     .++...+.+..  .++.+||..+.|++++.+.+.+.+-
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                          01379999999999753     45555555544  6999999999999999999998764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.27  E-value=3.9e-11  Score=107.88  Aligned_cols=137  Identities=12%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccc-----ccccc-----------ccccCce-----------eEEEEEeCCCC
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VENFV-----------QTYHPDV-----------FFIVYSDTNHT   98 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~~~~-----------~~~~~~~-----------~~i~i~Dt~g~   98 (250)
                      ......++|+++|..++|||||++ +|++.     ...+.           ..-|.|+           ..+.+|||||+
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh   85 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTA-AITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH   85 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHH-HHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence            345567889999999999999998 77531     00000           0111121           15789999998


Q ss_pred             ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccCCCccC---HH
Q psy5810          99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT---HS  174 (250)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~  174 (250)
                      ++.+..+ +.       .+..+|++++|+|+++...-+. .+.+..+..    .++|. |++.||+|+.+.....   .+
T Consensus        86 ~~f~~~~-~~-------~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~  152 (394)
T TIGR00485        86 ADYVKNM-IT-------GAAQMDGAILVVSATDGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM  152 (394)
T ss_pred             HHHHHHH-HH-------HHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence            7432111 11       1126899999999987322221 122222322    35675 5689999985422211   23


Q ss_pred             HHHHHHHHhC-----CeEEEEecCCCC
Q psy5810         175 DGKKLAYAWG-----VKFVETSVGLVY  196 (250)
Q Consensus       175 ~~~~~~~~~~-----~~~~evSa~~~~  196 (250)
                      +..++++.++     ++++++||++|.
T Consensus       153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       153 EVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHhcCCCccCccEEECcccccc
Confidence            4666666665     679999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.27  E-value=4.2e-11  Score=107.64  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=89.8

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccc-----ccc-----------ccccCce-----------eEEEEEeCCCCc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----NFV-----------QTYHPDV-----------FFIVYSDTNHTQ   99 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~-----------~~~~~~~-----------~~i~i~Dt~g~~   99 (250)
                      .....++|+++|..++|||||++ ++++...     .+.           ..-+.++           ..+.++||||.+
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTA-AITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHH-HHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            34566889999999999999998 7765210     000           0112221           156789999975


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC---HHH
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT---HSD  175 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~  175 (250)
                      +.+..+     ..   .+..+|++++|+|.++...-.. .+.+..+..    .++| +|++.||+|+.+...+.   .++
T Consensus        87 ~f~~~~-----~~---~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~  153 (394)
T PRK12736         87 DYVKNM-----IT---GAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEME  153 (394)
T ss_pred             HHHHHH-----HH---HHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHH
Confidence            322111     11   1126899999999987422111 222222322    3677 67899999985322221   234


Q ss_pred             HHHHHHHhC-----CeEEEEecCCCC--------CHHHHHHHHHHHHH
Q psy5810         176 GKKLAYAWG-----VKFVETSVGLVY--------KTDELLVGIARQAG  210 (250)
Q Consensus       176 ~~~~~~~~~-----~~~~evSa~~~~--------~I~~lf~~l~~~i~  210 (250)
                      ...+.+..+     ++++++||++|.        ++.++++.+.+.+.
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            555555555     479999999983        45666666665443

>PRK12735 elongation factor Tu; Reviewed

Probab=99.26  E-value=4.7e-11  Score=107.37  Aligned_cols=150  Identities=13%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccc-----cccc-----------cccccCce-----------eEEEEEeCCCC
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VENF-----------VQTYHPDV-----------FFIVYSDTNHT   98 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~~~-----------~~~~~~~~-----------~~i~i~Dt~g~   98 (250)
                      ..+...++|+++|..++|||||++ ++++.     ...+           ...-|.++           ..+.++||||.
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh   85 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTA-AITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH   85 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHH-HHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence            345566889999999999999998 77641     0110           00112211           15778999997


Q ss_pred             ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCcc---CHH
Q psy5810          99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQV---THS  174 (250)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v---~~~  174 (250)
                      +..+     ..+.   ..+..+|++++|+|..+...-+ ..+.+..+..    .++|.+ ++.||+|+.+....   ..+
T Consensus        86 ~~f~-----~~~~---~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~  152 (396)
T PRK12735         86 ADYV-----KNMI---TGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM  152 (396)
T ss_pred             HHHH-----HHHH---hhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHH
Confidence            5221     1111   1122789999999998743222 2233333322    457854 67999998532211   123


Q ss_pred             HHHHHHHHhC-----CeEEEEecCCCC----------CHHHHHHHHHHHH
Q psy5810         175 DGKKLAYAWG-----VKFVETSVGLVY----------KTDELLVGIARQA  209 (250)
Q Consensus       175 ~~~~~~~~~~-----~~~~evSa~~~~----------~I~~lf~~l~~~i  209 (250)
                      +...+.+.++     ++++++||++|.          ++.++++.|...+
T Consensus       153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            4555565554     579999999985          5666666666543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.26  E-value=1.1e-11  Score=98.82  Aligned_cols=106  Identities=12%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCc---e---------eEEEEEeCCCCccccCCCccccccccccccCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD---V---------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~---~---------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      |+++|++|+|||+|++ +|..+  .+.+|+..-   .         ..+.+.|+||..+-. ..+    .+....+..+-
T Consensus         6 vlL~Gps~SGKTaLf~-~L~~~--~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-~~~----~~~~~~~~~~k   77 (181)
T PF09439_consen    6 VLLVGPSGSGKTALFS-QLVNG--KTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR-SKL----LDELKYLSNAK   77 (181)
T ss_dssp             EEEE-STTSSHHHHHH-HHHHS--S---B---SSEEEECCGSSTCGTCECEEEETT-HCCC-HHH----HHHHHHHGGEE
T ss_pred             EEEEcCCCCCHHHHHH-HHhcC--CcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHH-HHH----HHhhhchhhCC
Confidence            9999999999999998 78774  333322221   1         157789999986321 111    11100011689


Q ss_pred             EEEEEEeCCC-HHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccC
Q psy5810         122 VFVIVYSVIE-RKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLER  167 (250)
Q Consensus       122 ~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~  167 (250)
                      ++|+|.|.+. +..+.++.+++-.+.....  ...+|+++++||.|+..
T Consensus        78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            9999999974 5566666666655544322  45789999999999853

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04169 RF3 RF3 subfamily

Probab=99.25  E-value=3e-11  Score=103.00  Aligned_cols=98  Identities=17%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             EEEEcCCCCchhhhchhhhccccc---cc---c---------cc-------ccCce-----------eEEEEEeCCCCcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVE---NF---V---------QT-------YHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~---~~---~---------~~-------~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      |+|+|..|+|||||++ +++....   ..   .         ..       .+.++           .++.+|||+|+..
T Consensus         5 i~ivGh~~~GKTTL~e-~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           5 FAIISHPDAGKTTLTE-KLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEcCCCCCHHHHHH-HHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            9999999999999999 6653201   00   0         00       01111           1678999999863


Q ss_pred             cc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810         101 CL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus       101 ~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ..  ....++          .+|++|+|+|.++...- ....|+....    ..++|+++++||+|+.+
T Consensus        84 f~~~~~~~l~----------~aD~~IlVvda~~g~~~-~~~~i~~~~~----~~~~P~iivvNK~D~~~  137 (267)
T cd04169          84 FSEDTYRTLT----------AVDSAVMVIDAAKGVEP-QTRKLFEVCR----LRGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHH----------HCCEEEEEEECCCCccH-HHHHHHHHHH----hcCCCEEEEEECCccCC
Confidence            21  222233          79999999999875332 2233333332    24789999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01850 CDC_Septin CDC/Septin

Probab=99.25  E-value=2.8e-11  Score=103.63  Aligned_cols=134  Identities=11%  Similarity=0.031  Sum_probs=76.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccccc----------ccCcee---------------EEEEEeCCCCccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT----------YHPDVF---------------FIVYSDTNHTQRCLTPM  105 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----------~~~~~~---------------~i~i~Dt~g~~~~~~~~  105 (250)
                      .++|+++|.+|+|||||+| ++.+.  .+...          +..++.               .+.+|||+|-.......
T Consensus         4 ~f~I~vvG~sg~GKSTliN-~L~~~--~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~   80 (276)
T cd01850           4 QFNIMVVGESGLGKSTFIN-TLFNT--KLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS   80 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHH-HHHcC--CCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence            4679999999999999999 77663  21111          222221               57899999942111100


Q ss_pred             --------ccccc-----cccc-----cccC--CCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810         106 --------PFCSQ-----VENF-----VQTY--HPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus       106 --------~~~~~-----~~~~-----~~~~--~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                              |....     .++.     ....  .+|+++++++.+.. .+... .+.++.+.     ..+|+++|+||+|
T Consensus        81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D  154 (276)
T cd01850          81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKAD  154 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCC
Confidence                    00000     0000     0111  47788888877642 11111 22333332     2689999999999


Q ss_pred             ccC--CCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         165 LER--RRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       165 l~~--~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                      +..  +.........+.+..++++++.....
T Consensus       155 ~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         155 TLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            843  22233555677788889988876553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.24  E-value=1.4e-11  Score=90.82  Aligned_cols=140  Identities=19%  Similarity=0.080  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER  132 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~  132 (250)
                      |+++||..|+|||||.+ .+.+....+..|....+..-...||+|.+-. .+.+|....-...   ++|++++|-..+++
T Consensus         3 ri~~vG~~gcGKTtL~q-~L~G~~~lykKTQAve~~d~~~IDTPGEy~~-~~~~Y~aL~tt~~---dadvi~~v~~and~   77 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQ-SLYGNDTLYKKTQAVEFNDKGDIDTPGEYFE-HPRWYHALITTLQ---DADVIIYVHAANDP   77 (148)
T ss_pred             eeEEecccccCchhHHH-HhhcchhhhcccceeeccCccccCCchhhhh-hhHHHHHHHHHhh---ccceeeeeecccCc
Confidence            49999999999999997 7777544444444444433335799997621 1233332222222   79999999999998


Q ss_pred             HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHHHHHHHHH
Q psy5810         133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~lf~~l~~  207 (250)
                      +|--.-     .+   ...-..|+|-|.+|.|+.++..  .+..++|..+-|.. ++++|+.++.|+++++..|..
T Consensus        78 ~s~f~p-----~f---~~~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          78 ESRFPP-----GF---LDIGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             cccCCc-----cc---ccccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            652110     01   1113456999999999976443  35667788878865 999999999999999999875

>PRK13351 elongation factor G; Reviewed

Probab=99.24  E-value=5.3e-11  Score=114.15  Aligned_cols=100  Identities=12%  Similarity=-0.068  Sum_probs=69.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-----------cccc-------cccCcee-----------EEEEEeCCCCc--
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-----------NFVQ-------TYHPDVF-----------FIVYSDTNHTQ--   99 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-----------~~~~-------~~~~~~~-----------~i~i~Dt~g~~--   99 (250)
                      ..+|+|+|..|+|||||++ +++....           .+..       ..+.++.           .+.+|||+|+.  
T Consensus         8 irni~iiG~~~~GKTtL~~-~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTE-RILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             ccEEEEECCCCCcchhHHH-HHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            3459999999999999998 7754211           0110       1233332           67899999985  


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ...+..+++          .+|++++|+|.++..+......|. .+..    .++|+++++||+|+.
T Consensus        87 ~~~~~~~l~----------~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~  138 (687)
T PRK13351         87 TGEVERSLR----------VLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRV  138 (687)
T ss_pred             HHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCC
Confidence            233334444          799999999999987776655553 3322    478999999999985

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.20  E-value=4.5e-11  Score=88.93  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc-c----ccccccCcee-------EEEEEeCCCCccccCC----Cccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQTYHPDVF-------FIVYSDTNHTQRCLTP----MPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~~~~~~~~-------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~  116 (250)
                      +|+|+|.+|||||||+| .+++... .    ...|..+...       .+.++||+|-......    ..+....+..  
T Consensus         1 ~V~iiG~~~~GKSTlin-~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLIN-ALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--
T ss_pred             CEEEECCCCCCHHHHHH-HHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--
Confidence            58999999999999998 7887311 1    1112222111       5679999996421100    0111111222  


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK  162 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK  162 (250)
                       ..+|++++|+|.+++.. +...+++.++ +    .+.|+++|.||
T Consensus        78 -~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence             27999999999888422 2223333434 1    57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.19  E-value=9e-11  Score=97.32  Aligned_cols=107  Identities=12%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             EEEEcCCCCchhhhchhhhcccccccc----------c-------------------cccCc--------eeEEEEEeCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFV----------Q-------------------TYHPD--------VFFIVYSDTN   96 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~----------~-------------------~~~~~--------~~~i~i~Dt~   96 (250)
                      |+++|..++|||||+. +++.......          +                   .+...        -..+.+|||+
T Consensus         3 vaiiGhvd~GKTTL~d-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           3 ICIIAHVDHGKTTLSD-SLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             EEEECCCCCCHHHHHH-HHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            8999999999999998 6653211000          0                   00000        2256789999


Q ss_pred             CCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-CCCccCH
Q psy5810          97 HTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-RRRQVTH  173 (250)
Q Consensus        97 g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~  173 (250)
                      |+..  ......++          .+|++++|+|+++..+.+... .+.....    .++|+++++||+|+. .+..++.
T Consensus        82 G~~~f~~~~~~~l~----------~aD~~ilVvD~~~g~~~~t~~-~l~~~~~----~~~p~ilviNKiD~~~~e~~~~~  146 (222)
T cd01885          82 GHVDFSSEVTAALR----------LCDGALVVVDAVEGVCVQTET-VLRQALK----ERVKPVLVINKIDRLILELKLSP  146 (222)
T ss_pred             CccccHHHHHHHHH----------hcCeeEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCcchhhhcCCH
Confidence            9863  22233334          899999999999876665432 2222322    468999999999974 3344554


Q ss_pred             HHH
Q psy5810         174 SDG  176 (250)
Q Consensus       174 ~~~  176 (250)
                      +++
T Consensus       147 ~~~  149 (222)
T cd01885         147 EEA  149 (222)
T ss_pred             HHH
Confidence            443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd00066 G-alpha G protein alpha subunit

Probab=99.19  E-value=1.8e-10  Score=100.66  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=84.0

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+.+||++||.  +..|..++.          +++++++|.|+++.          ..+.+....++.+.....-.++|+
T Consensus       162 ~~~~~DvgGq~~~R~kW~~~f~----------~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi  231 (317)
T cd00066         162 KFRMFDVGGQRSERKKWIHCFE----------DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI  231 (317)
T ss_pred             EEEEECCCCCcccchhHHHHhC----------CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence            45579999985  788888888          89999999999874          456666667777766555568999


Q ss_pred             EEEeeCCCccCC----------------CccCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         157 ILVANKADLERR----------------RQVTHSDGKKLAYA----------WGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       157 ilv~nK~Dl~~~----------------~~v~~~~~~~~~~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +|++||.|+-.+                ..-+.+++..+...          ..+-...++|.+..++..+|+.+...+.
T Consensus       232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence            999999997211                02244555555432          1223467899999999999999988877


Q ss_pred             hhh
Q psy5810         211 LNK  213 (250)
Q Consensus       211 ~~~  213 (250)
                      ...
T Consensus       312 ~~~  314 (317)
T cd00066         312 QNN  314 (317)
T ss_pred             HHH
Confidence            643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.17  E-value=1.5e-10  Score=107.34  Aligned_cols=99  Identities=14%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc------cc--------c-c-------cccCce-----------eEEEEEeCCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE------NF--------V-Q-------TYHPDV-----------FFIVYSDTNHT   98 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~------~~--------~-~-------~~~~~~-----------~~i~i~Dt~g~   98 (250)
                      -+|+|+|..++|||||++ +++...+      ..        . .       .-+.++           ..+.+|||+|.
T Consensus        11 Rni~IiGh~daGKTTL~e-~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         11 RTFAIISHPDAGKTTLTE-KLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            349999999999999998 6642100      00        0 0       001111           15789999998


Q ss_pred             ccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          99 QRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        99 ~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ...  .....+.          .+|++|+|+|.++...- ....++...    ...++|+++++||+|+.
T Consensus        90 ~df~~~~~~~l~----------~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         90 EDFSEDTYRTLT----------AVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRD  144 (526)
T ss_pred             hhhHHHHHHHHH----------HCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccc
Confidence            522  1222333          79999999999875322 223333333    22579999999999984

>TIGR00101 ureG urease accessory protein UreG

Probab=99.17  E-value=3e-10  Score=92.71  Aligned_cols=82  Identities=18%  Similarity=0.086  Sum_probs=54.2

Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH--hCCeEEEEecCCCCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA--WGVKFVETSVGLVYK  197 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~evSa~~~~~  197 (250)
                      +|.+|.|+|+++.++...  .+...+       ...=+++.||+|+.+...-..+...+..+.  .+.+++++||++|+|
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            688999999997665321  111111       122378899999864212223444444444  356799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy5810         198 TDELLVGIARQAG  210 (250)
Q Consensus       198 I~~lf~~l~~~i~  210 (250)
                      ++++|+++.+.+.
T Consensus       184 i~el~~~i~~~~~  196 (199)
T TIGR00101       184 LDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999986543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1490|consensus

Probab=99.17  E-value=2.4e-10  Score=102.03  Aligned_cols=162  Identities=14%  Similarity=0.035  Sum_probs=105.6

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc-----------ccccccCceeEEEEEeCCCCc-cccCCCccccccccccccC-CC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN-----------FVQTYHPDVFFIVYSDTNHTQ-RCLTPMPFCSQVENFVQTY-HP  120 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~-----------~~~~~~~~~~~i~i~Dt~g~~-~~~~~~~~~~~~~~~~~~~-~a  120 (250)
                      ++|+|-||||||||++ ....+...           |.......+..+++.||||.- +.+-....-.+..-+ +++ =-
T Consensus       171 lllcG~PNVGKSSf~~-~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT-ALAHLr  248 (620)
T KOG1490|consen  171 LLVCGYPNVGKSSFNN-KVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT-ALAHLR  248 (620)
T ss_pred             EEEecCCCCCcHhhcc-cccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH-HHHHhh
Confidence            9999999999999997 55543222           222223333378899999964 222222111110000 000 13


Q ss_pred             cEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH---HHHHHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK---KLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~---~~~~~~~~~~~evSa~~~  195 (250)
                      .+++++.|++...  |.+.--..+..|....  .+.|.|+|.||+|+-....++++...   .....-+++++++|+.+.
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e  326 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE  326 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence            6788899998754  5555455666665443  68899999999998665666655433   233444588999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         196 YKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      +|+.++-+.....++..+-.....
T Consensus       327 egVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  327 EGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             hceeeHHHHHHHHHHHHHHHHHhh
Confidence            999999999999888766554443

>PRK13768 GTPase; Provisional

Probab=99.17  E-value=1.8e-10  Score=97.54  Aligned_cols=113  Identities=20%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             EEEEEeCCCCcccc-----CCCccccccccccccCCCcEEEEEEeCCCHHhHHHH--HHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCL-----TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA--EDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~-----~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~--~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      ++.+||++|+.+..     +..+++    ..... .++++++|+|.++.....+.  ..|+....+..  .+.|+++|.|
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~----~l~~~-~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~n  170 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVE----RLSGS-SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLN  170 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHH----HHHhc-CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEE
Confidence            56789999985322     222222    11110 27999999999664433222  23333222221  4799999999


Q ss_pred             CCCccCCCccCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         162 KADLERRRQVTHSDGKK----------------------------LAYAWG--VKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~----------------------------~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      |+|+......  ++...                            ..+..+  .+++++||+++.|++++.+++.+.+.
T Consensus       171 K~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        171 KADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            9998543221  11111                            122334  46899999999999999999987653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.16  E-value=1.1e-10  Score=107.06  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF------   88 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~------   88 (250)
                      ....++|+++|..++|||||+. +++........           ..|                      .++.      
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~-~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIG-RLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHH-HHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3456889999999999999999 66543111110           011                      1111      


Q ss_pred             -----EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          89 -----FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        89 -----~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                           .+.+|||||.+...     ..+..   .+..+|++++|+|.+....-.....|.  +....  ...|++++.||+
T Consensus       103 ~~~~~~i~~iDTPGh~~f~-----~~~~~---~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKi  170 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYT-----RNMAT---GASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKM  170 (474)
T ss_pred             ccCCcEEEEEECCCcHHHH-----HHHHH---HHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEee
Confidence                 57789999965211     11111   122799999999997643211111111  11111  124789999999


Q ss_pred             CccCCCccCHH----HHHHHHHHhC----CeEEEEecCCCCCHHHH
Q psy5810         164 DLERRRQVTHS----DGKKLAYAWG----VKFVETSVGLVYKTDEL  201 (250)
Q Consensus       164 Dl~~~~~v~~~----~~~~~~~~~~----~~~~evSa~~~~~I~~l  201 (250)
                      |+.+...-..+    +...+.+..+    .+++++||++|.|+.++
T Consensus       171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            98532211111    2223333333    67999999999999764

>CHL00071 tufA elongation factor Tu

Probab=99.14  E-value=3.6e-10  Score=102.09  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=83.1

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccccc----------------cccccCcee-----------EEEEEeCCCCc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENF----------------VQTYHPDVF-----------FIVYSDTNHTQ   99 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----------------~~~~~~~~~-----------~i~i~Dt~g~~   99 (250)
                      .+...++|+++|..++|||||++ ++++.....                ...-+.++.           .+.+.||||..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~-~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTA-AITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHH-HHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            35566889999999999999999 776531100                000111211           46789999954


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHH
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSD  175 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~  175 (250)
                      .     +...+..   .+..+|++++|+|......- ...+.+..+..    .++| +|++.||+|+.+....   ..++
T Consensus        87 ~-----~~~~~~~---~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~  153 (409)
T CHL00071         87 D-----YVKNMIT---GAAQMDGAILVVSAADGPMP-QTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELE  153 (409)
T ss_pred             H-----HHHHHHH---HHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence            2     2221111   22279999999999864321 22223333322    3678 7789999998542221   1224


Q ss_pred             HHHHHHHhC-----CeEEEEecCCCCCH
Q psy5810         176 GKKLAYAWG-----VKFVETSVGLVYKT  198 (250)
Q Consensus       176 ~~~~~~~~~-----~~~~evSa~~~~~I  198 (250)
                      ...+.+..+     ++++++||.+|.|+
T Consensus       154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        154 VRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            445555544     57999999999754

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.14  E-value=3.2e-10  Score=101.65  Aligned_cols=55  Identities=22%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH-HHHHHHHHHHh
Q psy5810         153 EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE-LLVGIARQAGL  211 (250)
Q Consensus       153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~-lf~~l~~~i~~  211 (250)
                      ..|+++|+||.|+....    +....+.+.-+..++.+||+.+.++.+ +.+.+++.+..
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~  272 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG  272 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence            48999999999964211    112222222234589999999999998 66666665444

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.13  E-value=1.7e-10  Score=104.01  Aligned_cols=136  Identities=14%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee----------
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF----------   88 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~----------   88 (250)
                      ++|+++|..++|||||+. +++........           ..+                      .+++          
T Consensus         1 ~~~~~vGhvd~GKSTL~~-~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIG-RLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhH-HHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence            469999999999999999 66543111100           011                      1111          


Q ss_pred             -EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          89 -FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        89 -~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                       .+.++||||.+.....     +..   .+..+|++++|+|......-+..+.|. .+ ...  ...+++++.||+|+.+
T Consensus        80 ~~~~liDtPGh~~f~~~-----~~~---~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~--~~~~iivviNK~D~~~  147 (406)
T TIGR02034        80 RKFIVADTPGHEQYTRN-----MAT---GASTADLAVLLVDARKGVLEQTRRHSY-IA-SLL--GIRHVVLAVNKMDLVD  147 (406)
T ss_pred             eEEEEEeCCCHHHHHHH-----HHH---HHhhCCEEEEEEECCCCCccccHHHHH-HH-HHc--CCCcEEEEEEeccccc
Confidence             5778999997532111     111   122799999999987653222212221 11 111  2236899999999853


Q ss_pred             CCccC----HHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q psy5810         168 RRQVT----HSDGKKLAYAWG---VKFVETSVGLVYKTDE  200 (250)
Q Consensus       168 ~~~v~----~~~~~~~~~~~~---~~~~evSa~~~~~I~~  200 (250)
                      ...-.    .++...+.+..+   ++++++||++|.|+.+
T Consensus       148 ~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       148 YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            21110    122333344444   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.13  E-value=2.7e-10  Score=103.77  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=84.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccc--------c-----------------------cccccCcee--------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVEN--------F-----------------------VQTYHPDVF--------   88 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~--------~-----------------------~~~~~~~~~--------   88 (250)
                      ...++.|+++|..++|||||+. +++.....        +                       ....+.++.        
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g-~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTG-HLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHH-HHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            3445779999999999999997 55432110        0                       000111111        


Q ss_pred             ---EEEEEeCCCCccccC--CCccccccccccccCCCcEEEEEEeCCCHHhHH-------HHHHHHHHHHhhhCCCCCc-
Q psy5810          89 ---FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFK-------KAEDMLKTLWDSKYIGEKA-  155 (250)
Q Consensus        89 ---~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~-------~~~~~~~~i~~~~~~~~~p-  155 (250)
                         .+.+.||||++..+.  ...+.          .+|++|+|+|.++ .+|+       ...+.+....    ..++| 
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~----------~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~----~~gi~~  147 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTS----------QADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF----TLGVKQ  147 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhh----------hccEEEEEEEccc-CceecccCCCchHHHHHHHHH----HcCCCc
Confidence               567899999863322  22233          7999999999987 2232       2222222221    13564 


Q ss_pred             EEEEeeCCCccCCCcc-------CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810         156 VILVANKADLERRRQV-------THSDGKKLAYAWG-----VKFVETSVGLVYKTDE  200 (250)
Q Consensus       156 iilv~nK~Dl~~~~~v-------~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~  200 (250)
                      +|++.||+|+... ..       ..+++..+++..|     ++|+++||++|.|+.+
T Consensus       148 iIV~vNKmD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        148 MICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EEEEEEcccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            7889999997521 11       1345666777666     5699999999999854

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.13  E-value=5.2e-10  Score=91.92  Aligned_cols=56  Identities=25%  Similarity=0.132  Sum_probs=41.9

Q ss_pred             CCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         153 EKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      ..|.++++||+|+.+.......+..+..+..+  .+++++||+++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999986533233344555555444  789999999999999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.12  E-value=2.3e-09  Score=87.20  Aligned_cols=155  Identities=14%  Similarity=0.058  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccc-------cccCce-------eEEEEEeCCCCccccCC-Ccccccccc--cc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------TYHPDV-------FFIVYSDTNHTQRCLTP-MPFCSQVEN--FV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------~~~~~~-------~~i~i~Dt~g~~~~~~~-~~~~~~~~~--~~  115 (250)
                      +|+++|.+|||||||+| .+++.. .+..       |.....       ..+.++||||-...... ......+..  ..
T Consensus         2 ~i~lvG~~g~GKSsl~N-~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           2 RLVLVGKTGAGKSATGN-TILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             EEEEECCCCCCHHHHHH-HhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            59999999999999999 777642 1211       111111       16788999996532111 111111111  11


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhCCeEE
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI-GEKAVILVANKADLERRRQVT------HSDGKKLAYAWGVKFV  188 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~  188 (250)
                      ...++|++++|.|+.+ .+-++ ...++.+.+..+. .-.++++|.|+.|.-....+.      ....+.+.+..+-.|+
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~  157 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV  157 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence            1237899999999987 22221 2223333332221 124788999999953322111      1334555566565565


Q ss_pred             EEe-----cCCCCCHHHHHHHHHHHHHh
Q psy5810         189 ETS-----VGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       189 evS-----a~~~~~I~~lf~~l~~~i~~  211 (250)
                      ..+     +..+.++.++++.+.+.+.+
T Consensus       158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         158 AFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            554     44567788888888877765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.10  E-value=5.3e-10  Score=95.45  Aligned_cols=127  Identities=16%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc------cc----------------ccccCce-------eEEEEEeCCCCcc--cc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN------FV----------------QTYHPDV-------FFIVYSDTNHTQR--CL  102 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~------~~----------------~~~~~~~-------~~i~i~Dt~g~~~--~~  102 (250)
                      |+++|.+|+|||||++ +++.....      ..                .++....       ..+.+|||+|...  ..
T Consensus         2 i~ivG~~gsGKStL~~-~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           2 IALVGHSGSGKTTLAE-ALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             EEEECCCCCCHHHHHH-HHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            8999999999999998 66432110      00                0111111       1677899999752  22


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      +...+.          .+|++++|+|.++.........|. .+.    ..++|.++++||+|.....  ..+....+...
T Consensus        81 ~~~~l~----------~aD~~i~Vvd~~~g~~~~~~~~~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~  143 (268)
T cd04170          81 TRAALR----------AADAALVVVSAQSGVEVGTEKLWE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEA  143 (268)
T ss_pred             HHHHHH----------HCCEEEEEEeCCCCCCHHHHHHHH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHH
Confidence            233333          799999999999876554333332 232    2468999999999986431  12233344445


Q ss_pred             hCCeEE--EEecCCCCCH
Q psy5810         183 WGVKFV--ETSVGLVYKT  198 (250)
Q Consensus       183 ~~~~~~--evSa~~~~~I  198 (250)
                      ++.+++  .+....+.++
T Consensus       144 ~~~~~~~~~ip~~~~~~~  161 (268)
T cd04170         144 FGRPVVPLQLPIGEGDDF  161 (268)
T ss_pred             hCCCeEEEEecccCCCce
Confidence            565433  3344554444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.10  E-value=3.4e-10  Score=107.61  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=80.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee--------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF--------   88 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~--------   88 (250)
                      ..++|+++|..++|||||++ +++........           ..+                      .++.        
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~-~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIG-RLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CeeEEEEECCCCCChHHHHH-HHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            45789999999999999999 66653111110           011                      1111        


Q ss_pred             ---EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          89 ---FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        89 ---~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                         .+.++||||.+.....     +..   .+..+|++++|+|.+....-+.... +..+...   ...+++++.||+|+
T Consensus       102 ~~~~~~liDtPG~~~f~~~-----~~~---~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~---~~~~iivvvNK~D~  169 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRN-----MVT---GASTADLAIILVDARKGVLTQTRRH-SFIASLL---GIRHVVLAVNKMDL  169 (632)
T ss_pred             CCceEEEEECCChHHHHHH-----HHH---HHHhCCEEEEEEECCCCccccCHHH-HHHHHHh---CCCeEEEEEEeccc
Confidence               5678999997532111     111   1227999999999976532211111 1112111   23578999999998


Q ss_pred             cCC-Cc-cC--HHHHHHHHHHhCC---eEEEEecCCCCCHHH
Q psy5810         166 ERR-RQ-VT--HSDGKKLAYAWGV---KFVETSVGLVYKTDE  200 (250)
Q Consensus       166 ~~~-~~-v~--~~~~~~~~~~~~~---~~~evSa~~~~~I~~  200 (250)
                      .+. .. +.  ..+..++.+..++   +++++||++|.|+.+
T Consensus       170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            531 11 10  1223334445554   589999999999874

>smart00275 G_alpha G protein alpha subunit

Probab=99.09  E-value=7.8e-10  Score=97.47  Aligned_cols=115  Identities=12%  Similarity=0.121  Sum_probs=83.5

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+.+||.+||.  +..|..+|.          +++++|+|.|+++.          ..+++....++.+.....-.++|+
T Consensus       185 ~~~~~DvgGqr~~R~kW~~~f~----------~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi  254 (342)
T smart00275      185 FFRMFDVGGQRSERKKWIHCFD----------NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI  254 (342)
T ss_pred             EEEEEecCCchhhhhhHHHHhC----------CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence            45679999985  788888888          89999999999973          456666667777766555578999


Q ss_pred             EEEeeCCCccCCC---------------ccCHHHHHHHHHH-----h------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         157 ILVANKADLERRR---------------QVTHSDGKKLAYA-----W------GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~~-----~------~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +|++||.|+-.++               .-+.+.+..+...     .      .+-.+.++|.+-.++..+|+.+...+.
T Consensus       255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~  334 (342)
T smart00275      255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL  334 (342)
T ss_pred             EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence            9999999982110               1234445444322     1      122468889999999999999888777


Q ss_pred             hhh
Q psy5810         211 LNK  213 (250)
Q Consensus       211 ~~~  213 (250)
                      +..
T Consensus       335 ~~~  337 (342)
T smart00275      335 QRN  337 (342)
T ss_pred             HHH
Confidence            544

Subunit of G proteins that contains the guanine nucleotide binding site

>PLN03126 Elongation factor Tu; Provisional

Probab=99.09  E-value=4.8e-10  Score=102.75  Aligned_cols=137  Identities=12%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccc----------------cccccccCce-----------eEEEEEeCCCCcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----------------NFVQTYHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----------------~~~~~~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      +...++|+++|..++|||||++ +++....                .-....+.++           ..+.++||+|.++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTA-ALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHH-HHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            4567889999999999999998 7764200                0011112221           1567899999864


Q ss_pred             ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHHH
Q psy5810         101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSDG  176 (250)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~  176 (250)
                      .+..+     ...   +..+|++++|+|..+...-+ ..+++..+..    .++| ++++.||+|+.+....   -.++.
T Consensus       157 f~~~~-----~~g---~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i  223 (478)
T PLN03126        157 YVKNM-----ITG---AAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEV  223 (478)
T ss_pred             HHHHH-----HHH---HhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence            32222     111   12689999999988753322 2333333322    3677 7889999998542211   11234


Q ss_pred             HHHHHHh-----CCeEEEEecCCCCCH
Q psy5810         177 KKLAYAW-----GVKFVETSVGLVYKT  198 (250)
Q Consensus       177 ~~~~~~~-----~~~~~evSa~~~~~I  198 (250)
                      ..+.+..     +++++.+||.++.++
T Consensus       224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        224 RELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHhcCCCcCcceEEEEEccccccc
Confidence            4455543     467999999998643

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.09  E-value=2.8e-10  Score=97.20  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=61.4

Q ss_pred             EEEEcCCCCchhhhchhhhccccc---c---c-----c-------ccccCcee-----------EEEEEeCCCCcc--cc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVE---N---F-----V-------QTYHPDVF-----------FIVYSDTNHTQR--CL  102 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~---~---~-----~-------~~~~~~~~-----------~i~i~Dt~g~~~--~~  102 (250)
                      |+++|.+|+|||||++ +++...+   .   .     .       ..-+.++.           .+.+|||||...  ..
T Consensus         2 v~ivGh~~~GKTtL~~-~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           2 IGIIAHIDAGKTTTTE-RILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             EEEEcCCCCCHHHHHH-HHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            8999999999999999 6653211   0   0     0       01111221           677899999752  11


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      +...++          .+|++++|.|..+...-.. ...+..+.+    .++|++++.||+|+.+
T Consensus        81 ~~~~l~----------~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLR----------VLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHH----------HcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            222233          7999999999987532222 223333322    4689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.08  E-value=5.8e-10  Score=93.19  Aligned_cols=156  Identities=14%  Similarity=0.064  Sum_probs=93.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccC-CCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLT-PMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~-~~~~~~~~~~~  114 (250)
                      ++.+++|+++|.+|+|||||+|..|.+. .......+...            +.+.+||++|-+.... ..-++..+..+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~-~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGE-VKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhcc-CceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            5677889999999999999999444322 11112111111            3678999999763221 11122122222


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--------CccCHH-------HHH--
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--------RQVTHS-------DGK--  177 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--------~~v~~~-------~~~--  177 (250)
                      ..  ..|.++.+.|..|+.-=-+..-|.. +...  .-+.+++++.|.+|....        ..-+..       .+.  
T Consensus       115 l~--~~DLvL~l~~~~draL~~d~~f~~d-Vi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         115 LP--KLDLVLWLIKADDRALGTDEDFLRD-VIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             hh--hccEEEEeccCCCccccCCHHHHHH-HHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            22  6899999999988752222222333 3221  234899999999997321        111111       111  


Q ss_pred             -HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         178 -KLAYAWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       178 -~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                       +++++ =-|++.+|...+.|++++...++..+.
T Consensus       190 ~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         190 GRLFQE-VKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHHHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence             11221 135888889999999999999998765

>KOG0090|consensus

Probab=99.07  E-value=2.8e-09  Score=85.74  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             EEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCcc--ccCCCccccccccccccCCCcEE
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVF  123 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~i  123 (250)
                      |+++|..++|||+|+. ++..+ .....+.+.+...       ...+.|.||..+  .-...++.       .-+.+-++
T Consensus        41 Vll~Gl~dSGKT~LF~-qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~-------~~~~akai  112 (238)
T KOG0090|consen   41 VLLVGLSDSGKTSLFT-QLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLK-------HNYSAKAI  112 (238)
T ss_pred             EEEEecCCCCceeeee-ehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHcc-------ccccceeE
Confidence            9999999999999997 77773 1112223333322       456799999862  11111111       00148899


Q ss_pred             EEEEeCCC-HHhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccCCC--cc----CHHHHHHH---------------
Q psy5810         124 VIVYSVIE-RKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLERRR--QV----THSDGKKL---------------  179 (250)
Q Consensus       124 ilV~D~~~-~~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~--~v----~~~~~~~~---------------  179 (250)
                      |||.|..- +....++.+++-.+.-..  ....+|+++++||.|+--.+  ++    -+.|...+               
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99998644 444555556655554433  24578999999999983211  00    00111100               


Q ss_pred             -----------------HHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         180 -----------------AYAWGVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       180 -----------------~~~~~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                                       +.+..+.|.|+|++++ +++++-.|+.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                             0112345889999999 999999988754

>KOG1707|consensus

Probab=99.07  E-value=1.3e-09  Score=99.05  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---EEEEEeCCCCccccCCCcc----ccccccccccCCCc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---FIVYSDTNHTQRCLTPMPF----CSQVENFVQTYHPD  121 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---~i~i~Dt~g~~~~~~~~~~----~~~~~~~~~~~~ad  121 (250)
                      -+.+.+.++|..++|||.|++ .|.+.  .+...+..+..   .+...+..|+++.+.-...    .....+..  ..+|
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~-sflgr--~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke--~~cD  497 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQ-SFLGR--SMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKE--AACD  497 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHH-HHhcc--ccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCcc--ceee
Confidence            355669999999999999997 78873  22222211111   2223344465532211110    01111111  2689


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDE  200 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~  200 (250)
                      +++++||++++.||+.+...++..   .....+|+++|++|+|+++..+...-+..+++.+++++ -+..|.++... .+
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~  573 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKY---FDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE  573 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHh---hhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence            999999999999999987765543   23378999999999999875544444448899999987 67778775334 89


Q ss_pred             HHHHHHHHHHhhh
Q psy5810         201 LLVGIARQAGLNK  213 (250)
Q Consensus       201 lf~~l~~~i~~~~  213 (250)
                      +|..|+..+.-.+
T Consensus       574 lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  574 LFIKLATMAQYPH  586 (625)
T ss_pred             HHHHHHHhhhCCC
Confidence            9999998877655

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.07  E-value=2.9e-09  Score=93.05  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=62.7

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|.-+.... ...          .||.+++|.+....+....+.   ..+.      ++.-++|.||+|+...
T Consensus       150 d~viieT~Gv~qs~~~-i~~----------~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiVVNKaDl~~~  209 (332)
T PRK09435        150 DVILVETVGVGQSETA-VAG----------MVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIVINKADGDNK  209 (332)
T ss_pred             CEEEEECCCCccchhH-HHH----------hCCEEEEEecCCchHHHHHHH---hhhh------hhhheEEeehhcccch
Confidence            5567788885422222 122          589999997644444433322   2222      2234799999998542


Q ss_pred             Ccc--CHHHHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         169 RQV--THSDGKKLAYA-------WGVKFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       169 ~~v--~~~~~~~~~~~-------~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ...  ...+.......       +..+++.+||+++.||+++++.+.+.+....+.
T Consensus       210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~s  265 (332)
T PRK09435        210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTAS  265 (332)
T ss_pred             hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence            211  11112211111       224799999999999999999999876543333

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=4.5e-09  Score=95.07  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCchhhhchhhhccc------cccccccccCc--------eeEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPD--------VFFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~--------~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      -|.++|.-.-|||||+- .+-..      .......+|.+        ...+.+.||||.+  ..+...-..        
T Consensus         7 vVtimGHVDHGKTtLLD-~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~--------   77 (509)
T COG0532           7 VVTIMGHVDHGKTTLLD-KIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGAS--------   77 (509)
T ss_pred             EEEEeCcccCCccchhh-hHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCc--------
Confidence            38999999999999996 54442      11112222221        2367789999986  333333333        


Q ss_pred             cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-------HhC--
Q psy5810         117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-------AWG--  184 (250)
Q Consensus       117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~--  184 (250)
                        =+|++|||.|++|   |++.+.+..        ....++|++++.||+|.++.   .++....-..       .|+  
T Consensus        78 --vtDIaILVVa~dDGv~pQTiEAI~h--------ak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~  144 (509)
T COG0532          78 --VTDIAILVVAADDGVMPQTIEAINH--------AKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGD  144 (509)
T ss_pred             --cccEEEEEEEccCCcchhHHHHHHH--------HHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCc
Confidence              5899999999998   456555431        12268999999999998642   2333333222       332  


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ..++++||++|+|+.+|+..+.-....
T Consensus       145 v~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         145 VIFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             eEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence            358999999999999999988865443

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.05  E-value=2.4e-09  Score=105.25  Aligned_cols=101  Identities=22%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             EEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810          90 IVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus        90 i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                      +.+|||||++.  .+....+.          .+|++++|+|+++   +++++.+..    +..    .++|+++|+||+|
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~----------~aDivlLVVDa~~Gi~~qT~e~I~~----lk~----~~iPiIVViNKiD  589 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGS----------LADLAVLVVDINEGFKPQTIEAINI----LRQ----YKTPFVVAANKID  589 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcc----------cCCEEEEEEECcccCCHhHHHHHHH----HHH----cCCCEEEEEECCC
Confidence            78999999863  33333334          7999999999997   566665542    211    3689999999999


Q ss_pred             ccCCCccCH----------------HHHH----H----HH------------HHh--CCeEEEEecCCCCCHHHHHHHHH
Q psy5810         165 LERRRQVTH----------------SDGK----K----LA------------YAW--GVKFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       165 l~~~~~v~~----------------~~~~----~----~~------------~~~--~~~~~evSa~~~~~I~~lf~~l~  206 (250)
                      +......+.                .+..    +    ++            +++  .++++++||++|+||.+++..+.
T Consensus       590 L~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~  669 (1049)
T PRK14845        590 LIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA  669 (1049)
T ss_pred             CccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence            853221110                1110    0    11            111  35789999999999999998776


Q ss_pred             HH
Q psy5810         207 RQ  208 (250)
Q Consensus       207 ~~  208 (250)
                      ..
T Consensus       670 ~l  671 (1049)
T PRK14845        670 GL  671 (1049)
T ss_pred             Hh
Confidence            43

>PRK00049 elongation factor Tu; Reviewed

Probab=99.04  E-value=2.6e-09  Score=96.08  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccccc-----c---c--------cccccCce-----------eEEEEEeCCCC
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----N---F--------VQTYHPDV-----------FFIVYSDTNHT   98 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~---~--------~~~~~~~~-----------~~i~i~Dt~g~   98 (250)
                      .+....++|+++|..++|||||++ +++....     .   +        ...-+.++           ..+.+.||||.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~   85 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTA-AITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH   85 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHH-HHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence            345566889999999999999998 6765200     0   0        00111111           15678899997


Q ss_pred             ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCcc---CHH
Q psy5810          99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQV---THS  174 (250)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v---~~~  174 (250)
                      ...     ...+.   ..+..+|++++|.|..+...-+ ..+++..+..    .++|.+ ++.||+|+.+....   -..
T Consensus        86 ~~f-----~~~~~---~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~  152 (396)
T PRK00049         86 ADY-----VKNMI---TGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM  152 (396)
T ss_pred             HHH-----HHHHH---hhhccCCEEEEEEECCCCCchH-HHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence            421     11111   1122799999999998753222 2233333322    357865 68999998532111   112


Q ss_pred             HHHHHHHHh-----CCeEEEEecCCCC
Q psy5810         175 DGKKLAYAW-----GVKFVETSVGLVY  196 (250)
Q Consensus       175 ~~~~~~~~~-----~~~~~evSa~~~~  196 (250)
                      +...+....     +++++.+||+++.
T Consensus       153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        153 EVRELLSKYDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             HHHHHHHhcCCCccCCcEEEeeccccc
Confidence            333344433     3579999999875

>PLN03127 Elongation factor Tu; Provisional

Probab=99.04  E-value=2.6e-09  Score=97.33  Aligned_cols=151  Identities=12%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             ccccccEEEEEEEcCCCCchhhhchhhhccc-----cc-c--c--------cccccCcee-----------EEEEEeCCC
Q psy5810          45 FVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VE-N--F--------VQTYHPDVF-----------FIVYSDTNH   97 (250)
Q Consensus        45 ~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~-~--~--------~~~~~~~~~-----------~i~i~Dt~g   97 (250)
                      +..+..+++|+++|..++|||||++ ++.+.     .. .  +        ...-|.|++           .+.+.||||
T Consensus        55 ~~~~k~~~ni~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG  133 (447)
T PLN03127         55 FTRTKPHVNVGTIGHVDHGKTTLTA-AITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG  133 (447)
T ss_pred             hhcCCceEEEEEECcCCCCHHHHHH-HHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence            3445577889999999999999998 77521     00 0  0        001122221           567899999


Q ss_pred             CccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC---H
Q psy5810          98 TQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT---H  173 (250)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~  173 (250)
                      ..+     |+..+....   ..+|++++|.|.++...-+ ..+.+..+..    .++| +|++.||+|+.+.....   .
T Consensus       134 h~~-----f~~~~~~g~---~~aD~allVVda~~g~~~q-t~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~  200 (447)
T PLN03127        134 HAD-----YVKNMITGA---AQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVE  200 (447)
T ss_pred             ccc-----hHHHHHHHH---hhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence            753     222222211   2699999999997643222 1222232322    3678 57889999985422211   1


Q ss_pred             HHHHHHHHHh-----CCeEEEEecC---CCCC-------HHHHHHHHHHHH
Q psy5810         174 SDGKKLAYAW-----GVKFVETSVG---LVYK-------TDELLVGIARQA  209 (250)
Q Consensus       174 ~~~~~~~~~~-----~~~~~evSa~---~~~~-------I~~lf~~l~~~i  209 (250)
                      ++..++....     .++++.+||.   +|.|       +.++++.+...+
T Consensus       201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            1222333332     3578888876   4544       566666666544

>KOG0705|consensus

Probab=99.00  E-value=1.4e-09  Score=98.07  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=114.0

Q ss_pred             ccccccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCceeEEEEEeCCCCc------c-ccCCCccccccccccc
Q psy5810          45 FVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVFFIVYSDTNHTQ------R-CLTPMPFCSQVENFVQ  116 (250)
Q Consensus        45 ~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~~i~i~Dt~g~~------~-~~~~~~~~~~~~~~~~  116 (250)
                      .....-.+|+.|+|+.++|||+|++ +|+.+ ...-..+.+..+.+..+.|-..+.      . .....|-.        
T Consensus        24 lsrsipelk~givg~~~sgktalvh-r~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQft~--------   94 (749)
T KOG0705|consen   24 LSRSIPELKLGIVGTSQSGKTALVH-RYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQFCQ--------   94 (749)
T ss_pred             eecccchhheeeeecccCCceeeee-eeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhhhhh--------
Confidence            3445567889999999999999998 67662 223334444444444444422111      0 11222333        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc--CCCccCHHHHHHHHHHh-CCeEEEEecC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE--RRRQVTHSDGKKLAYAW-GVKFVETSVG  193 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~evSa~  193 (250)
                        ++|++||||.+.+.++|+.+......+..+.....+|+++++++.-..  ..+.+...++.+++.++ .+.||++++.
T Consensus        95 --wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen   95 --WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             --hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchh
Confidence              799999999999999999999888888766667789999999986653  34556666666665444 5779999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      +|.++..+|+.+..++...++.
T Consensus       173 yGlnv~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999887765433

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.99  E-value=2.8e-09  Score=102.31  Aligned_cols=126  Identities=10%  Similarity=-0.075  Sum_probs=75.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc------ccc------------cccCcee-----------EEEEEeCCCCcccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQ------------TYHPDVF-----------FIVYSDTNHTQRCL  102 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~------------~~~~~~~-----------~i~i~Dt~g~~~~~  102 (250)
                      -+|+|+|..++|||||++ +++.....      ...            .-+.++.           .+.+|||+|.....
T Consensus        11 rni~iiG~~~~GKsTL~~-~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTE-RILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence            359999999999999999 77532111      000            1122221           67899999986322


Q ss_pred             --CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH
Q psy5810         103 --TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA  180 (250)
Q Consensus       103 --~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  180 (250)
                        +...+.          .+|++++|+|.++....+....| ..+.+    .++|+++++||+|+.... . ......+.
T Consensus        90 ~~~~~~l~----------~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~~-~-~~~~~~i~  152 (689)
T TIGR00484        90 VEVERSLR----------VLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTGAN-F-LRVVNQIK  152 (689)
T ss_pred             HHHHHHHH----------HhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCCCC-H-HHHHHHHH
Confidence              122233          79999999999886555443333 33322    468999999999986422 1 12223333


Q ss_pred             HHhCC---e-EEEEecCCC
Q psy5810         181 YAWGV---K-FVETSVGLV  195 (250)
Q Consensus       181 ~~~~~---~-~~evSa~~~  195 (250)
                      ..++.   + .+.+|+..+
T Consensus       153 ~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       153 QRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHhCCCceeEEeccccCCC
Confidence            43332   2 456666655

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG3905|consensus

Probab=98.96  E-value=1.2e-08  Score=87.11  Aligned_cols=151  Identities=13%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      |+++|+.++||||||. ++.+.. ..-..-+..+.             ++.+|-.-|..  ..+....+.   +.-.   
T Consensus        55 VlvlGdn~sGKtsLi~-klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~---ats~---  126 (473)
T KOG3905|consen   55 VLVLGDNGSGKTSLIS-KLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP---ATSL---  126 (473)
T ss_pred             EEEEccCCCchhHHHH-Hhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc---ccCc---
Confidence            9999999999999996 777631 11111111111             33455555542  111111000   0000   


Q ss_pred             CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhC-----------------------------------------------
Q psy5810         119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKY-----------------------------------------------  150 (250)
Q Consensus       119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~-----------------------------------------------  150 (250)
                      .-..+||+.|+++|. -++.++.|..-+.++..                                               
T Consensus       127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de  206 (473)
T KOG3905|consen  127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE  206 (473)
T ss_pred             cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence            125678999999995 45667778765543221                                               


Q ss_pred             -------------CCCCcEEEEeeCCCcc----CCCc-------cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810         151 -------------IGEKAVILVANKADLE----RRRQ-------VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       151 -------------~~~~piilv~nK~Dl~----~~~~-------v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~  206 (250)
                                   .-.+|++||.+|||..    .+..       .-....++||..+|...+.+|++...||+-+..+|+
T Consensus       207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence                         0138999999999982    1111       123457889999999999999999999999999999


Q ss_pred             HHHHhh
Q psy5810         207 RQAGLN  212 (250)
Q Consensus       207 ~~i~~~  212 (250)
                      ..++.-
T Consensus       287 hr~yG~  292 (473)
T KOG3905|consen  287 HRSYGF  292 (473)
T ss_pred             HHhcCc
Confidence            887653

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.94  E-value=3.6e-09  Score=91.03  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=64.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccc----cccc-cccCce-------eEEEEEeCCCCcccc-CCCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQ-TYHPDV-------FFIVYSDTNHTQRCL-TPMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~-~~~~~~-------~~i~i~Dt~g~~~~~-~~~~~~~~~~~~  114 (250)
                      ....++|+++|.+||||||++| ++.+...    .+.+ ++.++.       ..+.+|||+|..... ...........+
T Consensus        35 ~~~~~rIllvGktGVGKSSliN-sIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVN-SIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            3456779999999999999999 7776422    1111 111111       178899999976321 001111111222


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCC-CCCcEEEEeeCCCcc
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYI-GEKAVILVANKADLE  166 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~-~~~piilv~nK~Dl~  166 (250)
                      ....+.|++++|.+++... +... ...++.+....+. .-.++|++.|+.|..
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            2223689999996654321 2111 2233334332211 134689999999964

>PRK12740 elongation factor G; Reviewed

Probab=98.93  E-value=4.6e-09  Score=100.63  Aligned_cols=94  Identities=13%  Similarity=-0.032  Sum_probs=61.1

Q ss_pred             EcCCCCchhhhchhhhccccccc------------c------ccccCcee-----------EEEEEeCCCCcc--ccCCC
Q psy5810          57 HSDTNHTQRCLTSMPFCSQVENF------------V------QTYHPDVF-----------FIVYSDTNHTQR--CLTPM  105 (250)
Q Consensus        57 iG~~~vGKSsLi~~~~~~~~~~~------------~------~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~  105 (250)
                      +|..++|||||++ +++......            .      ..-+.++.           .+.+|||+|...  ..+..
T Consensus         1 ig~~~~GKTTL~~-~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~   79 (668)
T PRK12740          1 VGHSGAGKTTLTE-AILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVER   79 (668)
T ss_pred             CCCCCCcHHHHHH-HHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence            6999999999998 674321110            0      01122221           678899999853  22222


Q ss_pred             ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       106 ~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .+.          .+|++++|+|.++.........|. .+..    .++|+++|+||+|+.
T Consensus        80 ~l~----------~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         80 ALR----------VLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHH----------HhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence            333          799999999999876665544443 2322    478999999999984

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.92  E-value=6.6e-09  Score=90.13  Aligned_cols=83  Identities=29%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH--H----HHHHHHH---HhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH--S----DGKKLAY---AWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~----~~~~~~~---~~~~~~~e  189 (250)
                      .+|.++++-+.   .+-+++......+      .+.|.++|.||+|+........  .    ....+..   .+..++++
T Consensus       147 ~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~  217 (300)
T TIGR00750       147 MADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT  217 (300)
T ss_pred             hhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence            46777777433   3334444433333      3567899999999864221110  0    0011111   12235899


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q psy5810         190 TSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +||+++.|++++++++.+...
T Consensus       218 iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       218 TSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             EEccCCCCHHHHHHHHHHHHH
Confidence            999999999999999998644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.90  E-value=1.1e-08  Score=93.29  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCce---------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDV---------   87 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~---------   87 (250)
                      +...+.|+++|..++|||||+. +++...+...                               ..-+.++         
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHH-HHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence            4456789999999999999998 5544211000                               0011111         


Q ss_pred             --eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hH---HHHHHHHHHHHhhhCCCCCc-EEE
Q psy5810          88 --FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TF---KKAEDMLKTLWDSKYIGEKA-VIL  158 (250)
Q Consensus        88 --~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf---~~~~~~~~~i~~~~~~~~~p-iil  158 (250)
                        ..+.+.||||..+.+..+     ..   .+..+|++++|.|.+...   .|   ....+-+..+..    ..+| +|+
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~-----~~---g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv  150 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNM-----IT---GTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIV  150 (446)
T ss_pred             CCeEEEEEECCChHHHHHHH-----HH---hhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEE
Confidence              156789999975322111     11   112799999999998642   11   112221122211    3666 778


Q ss_pred             EeeCCCccC--CCc--c--CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810         159 VANKADLER--RRQ--V--THSDGKKLAYAWG-----VKFVETSVGLVYKTDE  200 (250)
Q Consensus       159 v~nK~Dl~~--~~~--v--~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~  200 (250)
                      +.||+|...  ...  .  ..++...+....+     ++++++||.+|.|+.+
T Consensus       151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            999999532  000  0  1223333444333     5699999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=98.88  E-value=4.4e-09  Score=97.58  Aligned_cols=101  Identities=11%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc--c-ccc---cc----------------ccccCce-----------eEEEEEeCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS--Q-VEN---FV----------------QTYHPDV-----------FFIVYSDTNH   97 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~--~-~~~---~~----------------~~~~~~~-----------~~i~i~Dt~g   97 (250)
                      ..+|+|+|..++|||||++ +++.  + ...   ..                ...+.++           ..+.+|||+|
T Consensus        11 ~RniaiiGh~~aGKTTL~e-~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITE-KVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHH-HHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            3459999999999999998 6532  1 000   00                0011111           1677899999


Q ss_pred             Ccccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          98 TQRCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        98 ~~~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      +....  ....+.          .+|++|+|+|.++... .....++... +   ..++|+++++||+|+..
T Consensus        90 ~~df~~~~~~~l~----------~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLT----------AVDNCLMVIDAAKGVE-TRTRKLMEVT-R---LRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHH----------hCCEEEEEEECCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECccccC
Confidence            85211  122233          7999999999987421 1223333333 2   25789999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01855 YqeH YqeH

Probab=98.86  E-value=5.5e-09  Score=84.55  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCC---eEEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGV---KFVET  190 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~---~~~ev  190 (250)
                      ++|++++|+|++++..     .|...+..  ...+.|+++|+||+|+... ....++...+.     +..+.   .++++
T Consensus        34 ~ad~il~VvD~~~~~~-----~~~~~l~~--~~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  105 (190)
T cd01855          34 KKALVVHVVDIFDFPG-----SLIPRLRL--FGGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGLKPKDVILI  105 (190)
T ss_pred             CCcEEEEEEECccCCC-----ccchhHHH--hcCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCCCcccEEEE
Confidence            8999999999988541     23333322  1256899999999998542 23334444443     23333   58999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      ||+++.|+++++..+...+... .....-.....+.+++++.+.+...
T Consensus       106 SA~~~~gi~eL~~~l~~~l~~~-~~~~~~G~~nvGKStliN~l~~~~~  152 (190)
T cd01855         106 SAKKGWGVEELINAIKKLAKKG-GDVYVVGATNVGKSTLINALLKKDN  152 (190)
T ss_pred             ECCCCCCHHHHHHHHHHHhhcC-CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence            9999999999999998876421 1111112222467788888887653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12739 elongation factor G; Reviewed

Probab=98.86  E-value=1.9e-08  Score=96.64  Aligned_cols=103  Identities=13%  Similarity=-0.043  Sum_probs=63.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc---cc---c------------ccccCce-----------eEEEEEeCCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NF---V------------QTYHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~---~------------~~~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      +..+|+|+|..++|||||++ +++....   ..   .            ..-+.++           ..+.++||+|...
T Consensus         7 ~irni~iiGh~~~GKsTL~~-~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTE-RILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHH-HHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            44569999999999999999 6653211   10   0            0111111           1677899999753


Q ss_pred             ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ...        +...+++.+|++++|+|..+...-+.. ..+..+.+    .++|++++.||+|+.
T Consensus        86 f~~--------e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~  138 (691)
T PRK12739         86 FTI--------EVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHH--------HHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence            111        122222379999999999876433322 22222322    468999999999985

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.85  E-value=7.7e-09  Score=87.23  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCc----cccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMP----FCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~----~~~~~~  112 (250)
                      ...++|+++|.+|||||||+| .+.+........+.+..            ..+.+|||+|-.......+    ....+.
T Consensus        29 ~~~~~IllvG~tGvGKSSliN-aLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTIN-SIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            345779999999999999999 77774221111111111            1578999999652211010    111122


Q ss_pred             cccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCC-CCCcEEEEeeCCCcc
Q psy5810         113 NFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYI-GEKAVILVANKADLE  166 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  166 (250)
                      .+.+....|++++|..++.. .++.+ ...++.+....+. --.++++|.||+|..
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            23333367888888766543 22222 1233333322211 124699999999973

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1145|consensus

Probab=98.84  E-value=5.6e-08  Score=88.02  Aligned_cols=137  Identities=16%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-------------ccccccccCceeEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-------------ENFVQTYHPDVFFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-------------~~~~~~~~~~~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +..-|-|+|.-.-||||||- .|-+..             +-|.-+.. .-..+.+.||||..  ..+...-..      
T Consensus       152 RpPVVTiMGHVDHGKTTLLD-~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~------  223 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLD-ALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGAN------  223 (683)
T ss_pred             CCCeEEEeecccCChhhHHH-HHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCc------
Confidence            34449999999999999997 665531             11111111 11378889999974  333333333      


Q ss_pred             cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-------HHhC
Q psy5810         115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-------YAWG  184 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-------~~~~  184 (250)
                          -+|+++||...+|   +++.+.+.        +....++|+|+..||+|.++.   +++.+.+-.       +++|
T Consensus       224 ----vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~G  288 (683)
T KOG1145|consen  224 ----VTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLG  288 (683)
T ss_pred             ----cccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcC
Confidence                6899999999988   45555543        333478999999999997642   334443332       3343


Q ss_pred             --CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         185 --VKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       185 --~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                        ...+++||++|.|++.|-+.++-++
T Consensus       289 GdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  289 GDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             CceeEEEeecccCCChHHHHHHHHHHH
Confidence              3589999999999999988887544

>PRK12288 GTPase RsgA; Reviewed

Probab=98.84  E-value=7.9e-09  Score=91.13  Aligned_cols=110  Identities=16%  Similarity=0.090  Sum_probs=80.0

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ++|.+++|++++...+|..+..|+..+.    ..++|+++|+||+|+...... ...+.....+..+++++++||+++.|
T Consensus       120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        120 NIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            7999999999998899999999987553    257899999999999542211 11222333456788999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         198 TDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       198 I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      +++++..+...+.      -.-..+....++++|.+.++..
T Consensus       196 ideL~~~L~~ki~------~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        196 LEELEAALTGRIS------IFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             HHHHHHHHhhCCE------EEECCCCCCHHHHHHHhccccc
Confidence            9999998875431      1222333567778888776654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.84  E-value=8.9e-08  Score=87.34  Aligned_cols=152  Identities=15%  Similarity=0.093  Sum_probs=94.8

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      |+|+|+.++||||||. +|.+. +....+.+..+.             ++-+|-..|..  ..+......  .+..    
T Consensus        28 vlvlG~~~~GKttli~-~L~~~-e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt--~~~l----   99 (472)
T PF05783_consen   28 VLVLGDKGSGKTTLIA-RLQGI-EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALT--PENL----   99 (472)
T ss_pred             EEEEeCCCCchHHHHH-Hhhcc-CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCC--cccc----
Confidence            9999999999999997 77653 222222222222             44566655532  111111111  0000    


Q ss_pred             CCcEEEEEEeCCCHHhH-HHHHHHHHHHHhhh------------------------------C----------------C
Q psy5810         119 HPDVFVIVYSVIERKTF-KKAEDMLKTLWDSK------------------------------Y----------------I  151 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~------------------------------~----------------~  151 (250)
                      .--.+|+|.|++.|..+ +.+..|+.-+..+.                              .                .
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence            24788899999999764 34455544332100                              0                0


Q ss_pred             ---------------CCCcEEEEeeCCCccC----CCc-------cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy5810         152 ---------------GEKAVILVANKADLER----RRQ-------VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGI  205 (250)
Q Consensus       152 ---------------~~~piilv~nK~Dl~~----~~~-------v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l  205 (250)
                                     -.+|++||++|+|...    +..       .-....+.+|..+|+.++.+|++...+++.++.+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                           0279999999999621    111       11233677889999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy5810         206 ARQAGLNK  213 (250)
Q Consensus       206 ~~~i~~~~  213 (250)
                      ...+....
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            88876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.83  E-value=1.8e-08  Score=91.91  Aligned_cols=151  Identities=14%  Similarity=0.173  Sum_probs=89.5

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccc---------------ccccc----------------ccCc---------
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE---------------NFVQT----------------YHPD---------   86 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~---------------~~~~~----------------~~~~---------   86 (250)
                      ..+-.+.|.++|.-..|||||+. .+.+...               .|...                +...         
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~-aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVK-ALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG  108 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHH-HHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence            34556779999999999999996 7765200               01000                0000         


Q ss_pred             -------eeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEE
Q psy5810          87 -------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVIL  158 (250)
Q Consensus        87 -------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piil  158 (250)
                             ...+.+.|+||.+..+..+     ...   +..+|++++|.|.++. ..-+. .+.+..+ ...  .-.++|+
T Consensus       109 ~~~~~~~~~~i~~IDtPGH~~fi~~m-----~~g---~~~~D~alLVVda~~g~~~~qT-~ehl~i~-~~l--gi~~iIV  176 (460)
T PTZ00327        109 CGHKMTLKRHVSFVDCPGHDILMATM-----LNG---AAVMDAALLLIAANESCPQPQT-SEHLAAV-EIM--KLKHIII  176 (460)
T ss_pred             ccccccccceEeeeeCCCHHHHHHHH-----HHH---HhhCCEEEEEEECCCCccchhh-HHHHHHH-HHc--CCCcEEE
Confidence                   1256789999975322111     111   1268999999999874 12111 1222212 111  2246899


Q ss_pred             EeeCCCccCCCcc--CHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         159 VANKADLERRRQV--THSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       159 v~nK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +.||+|+.+...+  ..++...+.+.   .+.+++++||++|.|+++|++.|...+.
T Consensus       177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            9999998532111  11223333322   2568999999999999999999887554

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.83  E-value=1.9e-09  Score=90.36  Aligned_cols=117  Identities=21%  Similarity=0.137  Sum_probs=53.8

Q ss_pred             EEEEEeCCCCccccCCC-ccccccccccccCCCcEEEEEEeCC---CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810          89 FIVYSDTNHTQRCLTPM-PFCSQVENFVQTYHPDVFVIVYSVI---ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~-~~~~~~~~~~~~~~ad~iilV~D~~---~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                      ...++|||||.+-.... ......+...+ ...-+++++.|..   ++.+|-..  ++-.+... ..-+.|.|.|.||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~-~~~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIM-LRLELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHH--HHHHHHHH-HHHTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHH--HHHHHHHH-hhCCCCEEEeeeccC
Confidence            46689999995221111 11101111111 1457888999965   44555332  22221110 114799999999999


Q ss_pred             ccCCC---cc----C------------HHHHHHHH---HHhC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         165 LERRR---QV----T------------HSDGKKLA---YAWG-V-KFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       165 l~~~~---~v----~------------~~~~~~~~---~~~~-~-~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      +.+..   .+    .            ..-..+++   .+++ . .++.+|+.+++++.+++..+-+.+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            85411   00    0            00011112   1223 3 599999999999999998887643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.82  E-value=3.5e-08  Score=87.94  Aligned_cols=78  Identities=10%  Similarity=-0.031  Sum_probs=47.3

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee------------------------EEEEEeCCCCcc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF------------------------FIVYSDTNHTQR  100 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~------------------------~i~i~Dt~g~~~  100 (250)
                      ...++|+|+|.||||||||+| .+.+......    .|..+..+                        .+++.||||-..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfn-aLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFN-ALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHH-HHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            455789999999999999999 7876422111    12222222                        378899999652


Q ss_pred             ccCCCcccccccc-ccccCCCcEEEEEEeC
Q psy5810         101 CLTPMPFCSQVEN-FVQTYHPDVFVIVYSV  129 (250)
Q Consensus       101 ~~~~~~~~~~~~~-~~~~~~ad~iilV~D~  129 (250)
                      .....  ..+-.. ...++++|++++|.|.
T Consensus        98 ga~~g--~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         98 GASEG--EGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CCcch--hHHHHHHHHHHHHCCEEEEEEeC
Confidence            21111  000011 1122379999999997

>KOG0410|consensus

Probab=98.82  E-value=1.9e-09  Score=91.80  Aligned_cols=142  Identities=20%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             EEEEcCCCCchhhhchhhhccc----cccccccccCcee--------EEEEEeCCCCccccCCCc---cccccccccccC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFVQTY  118 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~~~  118 (250)
                      |.++|.+|+|||||++ .+.+.    .++...|.++|..        .+.+.||.|--..+....   |+...|+   ++
T Consensus       181 iavVGYTNaGKsTLik-aLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee---Va  256 (410)
T KOG0410|consen  181 IAVVGYTNAGKSTLIK-ALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE---VA  256 (410)
T ss_pred             EEEEeecCccHHHHHH-HHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH---Hh
Confidence            9999999999999998 78754    3444455666554        566789998543332222   2222222   23


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc----EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA----VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p----iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                      .+|.++.|.|+++|.--+.....+.-+.+. +.+..|    ++=|=||.|..+.. +.       .++++  -+.+||++
T Consensus       257 eadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~isalt  325 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGISALT  325 (410)
T ss_pred             hcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccccc-Cc-------cccCC--cccccccc
Confidence            799999999999997655555444444332 333334    45566788864321 11       12222  67899999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~  210 (250)
                      |.|++++...+-..+.
T Consensus       326 gdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVA  341 (410)
T ss_pred             CccHHHHHHHHHHHhh
Confidence            9999999888776554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.81  E-value=2e-08  Score=86.59  Aligned_cols=83  Identities=23%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+..  .......+....+.+++++||+++.|
T Consensus        78 nvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~g  151 (287)
T cd01854          78 NVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGEG  151 (287)
T ss_pred             eCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCcc
Confidence            899999999999998 88899999887743    478999999999985431  11222334455788999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         198 TDELLVGIAR  207 (250)
Q Consensus       198 I~~lf~~l~~  207 (250)
                      +++++..+..
T Consensus       152 i~~L~~~L~~  161 (287)
T cd01854         152 LDELREYLKG  161 (287)
T ss_pred             HHHHHhhhcc
Confidence            9999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.80  E-value=1.8e-08  Score=87.28  Aligned_cols=109  Identities=20%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             CCCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      +++|++++|+|++++.++.. +..|+..+..    .++|+++|+||+|+.+... ...+..+..+..+++++++||+++.
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            48999999999998876544 4778776643    5789999999999853221 1223344556678899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810         197 KTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK  237 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (250)
                      |+++++..+...+.      -.-..+....+++++.+.+..
T Consensus       154 gi~~L~~~l~gk~~------~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        154 GLDELKPLLAGKVT------VLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             cHHHHHhhccCceE------EEECCCCCCHHHHHHHHhCCc
Confidence            99999988743221      111222245566666666544

>PRK12289 GTPase RsgA; Reviewed

Probab=98.77  E-value=3.4e-08  Score=87.24  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             CCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         118 YHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      +++|.+++|+|+.++. ++..+..|+..+.    ..++|+++|+||+|+......  .........+|++++++||+++.
T Consensus        88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~  161 (352)
T PRK12289         88 ANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGI  161 (352)
T ss_pred             hcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCC
Confidence            3899999999999875 5556778877663    257999999999998532111  11222334678899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         197 KTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      |+++++..+...+.      -.-..+....++++|.+.+...
T Consensus       162 GI~eL~~~L~~ki~------v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        162 GLEALLEQLRNKIT------VVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             CHHHHhhhhccceE------EEEeCCCCCHHHHHHHHcCccc
Confidence            99999998875431      1222333456777777776543

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.77  E-value=5.1e-08  Score=86.12  Aligned_cols=152  Identities=15%  Similarity=0.132  Sum_probs=77.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc---------cccccccccCce------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ---------VENFVQTYHPDV------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~---------~~~~~~~~~~~~------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+.|+|+|++|+||||||| .+.+-         .+...+|..++.      ..+.+||.||.-  ..-...|+..+  
T Consensus        34 ~~l~IaV~G~sGsGKSSfIN-alrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--  110 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFIN-ALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--  110 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHH-HHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT--
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--
Confidence            45679999999999999999 77552         111222222222      278899999963  11111122211  


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHH-HHHHhhhCCCCCcEEEEeeCCCcc-------CCCccCHHHH----HHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDML-KTLWDSKYIGEKAVILVANKADLE-------RRRQVTHSDG----KKLA  180 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~-~~i~~~~~~~~~piilv~nK~Dl~-------~~~~v~~~~~----~~~~  180 (250)
                         ....-|.+|++.+..    |....-|+ ..+.+    -+.|+.+|-+|.|..       ..+..+.++.    ++.|
T Consensus       111 ---~~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c  179 (376)
T PF05049_consen  111 ---KFYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC  179 (376)
T ss_dssp             ---TGGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred             ---cccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence               111579888877532    33333332 33433    478999999999961       1223443333    3333


Q ss_pred             HH----hCC---eEEEEecCCC--CCHHHHHHHHHHHHHhhhhh
Q psy5810         181 YA----WGV---KFVETSVGLV--YKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       181 ~~----~~~---~~~evSa~~~--~~I~~lf~~l~~~i~~~~~~  215 (250)
                      .+    .|+   ++|-+|+.+-  .....+.+.|.+.+...+..
T Consensus       180 ~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  180 LENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            22    233   4888998874  45778888888777655443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01882 BMS1 Bms1

Probab=98.74  E-value=3.7e-08  Score=81.97  Aligned_cols=129  Identities=10%  Similarity=0.044  Sum_probs=72.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc--cccccc------CceeEEEEEeCCCCccccCCCccccccccccccCCCcEE
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN--FVQTYH------PDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVF  123 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~~~~~------~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~i  123 (250)
                      ..|+++|.+|+|||||++ .+......  .....|      .....+.+.||+|....        ..+.   ++.+|++
T Consensus        40 ~~i~ivG~~~~GKstl~~-~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~~~--------~l~~---ak~aDvV  107 (225)
T cd01882          40 LVVAVVGPPGVGKTTLIK-SLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINA--------MIDI---AKVADLV  107 (225)
T ss_pred             CEEEEECCCCCCHHHHHH-HHHhhcccCccccccccEEEEecCCceEEEEeCCchHHH--------HHHH---HHhcCEE
Confidence            459999999999999997 66653111  111111      11225677899875311        1111   1279999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc-cC--HHHHHH-HHHHh--CCeEEEEecCCCC
Q psy5810         124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ-VT--HSDGKK-LAYAW--GVKFVETSVGLVY  196 (250)
Q Consensus       124 ilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-v~--~~~~~~-~~~~~--~~~~~evSa~~~~  196 (250)
                      ++|+|.+....... ..++..+..    .+.| +++|.||.|+.+... ..  .++... +..+.  +.+++.+||++.-
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999986543322 122332322    3567 455999999853221 11  111211 22222  3569999999874


Q ss_pred             C
Q psy5810         197 K  197 (250)
Q Consensus       197 ~  197 (250)
                      .
T Consensus       183 ~  183 (225)
T cd01882         183 R  183 (225)
T ss_pred             C
Confidence            3

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG3886|consensus

Probab=98.72  E-value=3.1e-07  Score=75.05  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee------------EEEEEeCCCCcccc-------CCCccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF------------FIVYSDTNHTQRCL-------TPMPFCSQVE  112 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~------------~i~i~Dt~g~~~~~-------~~~~~~~~~~  112 (250)
                      -||+++|.+|+||||+=.-.|.+....-..-.|.+++            .+.+||.+||+..+       ....++    
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~----   80 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR----   80 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhe----
Confidence            3699999999999998542232221111223333332            45679999997222       233444    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHH---HHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHHH----HHHHHHHh
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLER--RRQVTHSD----GKKLAYAW  183 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~~----~~~~~~~~  183 (250)
                            +.+++++|||++..+--.   ..+.-++.+.++  .++..+....+|.|+..  .+.+...+    ...+....
T Consensus        81 ------nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~  152 (295)
T KOG3886|consen   81 ------NVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPL  152 (295)
T ss_pred             ------eheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccc
Confidence                  899999999998875433   344455555543  46667888889999843  22222222    22223334


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHH
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIA  206 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~  206 (250)
                      ++.++++|.-+ +++...+..+.
T Consensus       153 ~~~~f~TsiwD-etl~KAWS~iv  174 (295)
T KOG3886|consen  153 ECKCFPTSIWD-ETLYKAWSSIV  174 (295)
T ss_pred             cccccccchhh-HHHHHHHHHHH
Confidence            55567766543 33333333333

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.72  E-value=1.8e-07  Score=74.74  Aligned_cols=55  Identities=27%  Similarity=0.091  Sum_probs=43.5

Q ss_pred             cEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         155 AVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       155 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      .=++|.||.|+.+.-..+.+...+-+++.+  .+++++|+++|+|+++++.|+....
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            347889999997655556677776776664  6799999999999999999987643

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.72  E-value=9.4e-08  Score=81.76  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=39.9

Q ss_pred             CCcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         153 EKAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      ..+-++|.||+|+........++..+..+..  +.+++++||++|+|++++.+||..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4567889999998542122233444444443  4679999999999999999999763

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.69  E-value=8.4e-08  Score=79.10  Aligned_cols=158  Identities=15%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccccc-------ccCce-------eEEEEEeCCCCccccCC-Ccccccccccc-
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-------YHPDV-------FFIVYSDTNHTQRCLTP-MPFCSQVENFV-  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-------~~~~~-------~~i~i~Dt~g~~~~~~~-~~~~~~~~~~~-  115 (250)
                      ++|+++|.+|+||||++| .+++.. .|...       .....       ..+.++||||-...-.. ......+..+. 
T Consensus         1 l~IlllG~tGsGKSs~~N-~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGN-SILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            579999999999999999 777642 22221       11111       16789999995321110 00000011111 


Q ss_pred             -ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccC-------HHHHHHHHHHhCCe
Q psy5810         116 -QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT-------HSDGKKLAYAWGVK  186 (250)
Q Consensus       116 -~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~-------~~~~~~~~~~~~~~  186 (250)
                       ...+.|+++||++.++. +-++ ...++.+.+..+.. -.-++||.+..|......+.       .....++.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence             11278999999999832 2222 12222333322221 23478888888864433321       12244566777777


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHhhh
Q psy5810         187 FVETSVG------LVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       187 ~~evSa~------~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |...+.+      +...+.+++..+-..+.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8877766      23457777777776666554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.69  E-value=1.8e-08  Score=97.17  Aligned_cols=100  Identities=14%  Similarity=0.087  Sum_probs=62.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-------------ccccc-------cccCc-----------eeEEEEEeCCCCc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-------------ENFVQ-------TYHPD-----------VFFIVYSDTNHTQ   99 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-------------~~~~~-------~~~~~-----------~~~i~i~Dt~g~~   99 (250)
                      ..+|+|+|..++|||||++ +|+...             ..+.+       |+...           -..+.+|||+|..
T Consensus        19 irnI~ivGh~~~GKTTL~~-~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSD-NLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHH-HHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            3469999999999999998 665310             01111       11111           1267889999986


Q ss_pred             cc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         100 RC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       100 ~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ..  .....++          .+|++++|+|..+....+....|.. ..    ..+.|+++++||+|..
T Consensus        98 ~f~~~~~~al~----------~aD~~llVvda~~g~~~~t~~~~~~-~~----~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DFGGDVTRAMR----------AVDGAIVVVCAVEGVMPQTETVLRQ-AL----KENVKPVLFINKVDRL  151 (720)
T ss_pred             ccHHHHHHHHH----------hcCEEEEEEecCCCCCccHHHHHHH-HH----HcCCCEEEEEEChhcc
Confidence            31  1122222          8999999999987433222222222 21    2467888999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.68  E-value=4.7e-07  Score=80.43  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=90.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-----------------------cccccccccCce---------------eEEEE
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-----------------------VENFVQTYHPDV---------------FFIVY   92 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-----------------------~~~~~~~~~~~~---------------~~i~i   92 (250)
                      .+-|.|+|+.++|||||+| +|.+.                       .+....|..|.+               .++.+
T Consensus        17 ~IyIGvvGpvrtGKSTfIn-~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIK-KFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             cEEEEEEcCCCCChHHHHH-HHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3459999999999999998 78774                       111113333433               26778


Q ss_pred             EeCCCCc--cccCCC-----------cccccc----c----cccccC-CCcEEEEEE-eCC----CHHhHHHH-HHHHHH
Q psy5810          93 SDTNHTQ--RCLTPM-----------PFCSQV----E----NFVQTY-HPDVFVIVY-SVI----ERKTFKKA-EDMLKT  144 (250)
Q Consensus        93 ~Dt~g~~--~~~~~~-----------~~~~~~----~----~~~~~~-~ad~iilV~-D~~----~~~Sf~~~-~~~~~~  144 (250)
                      .||+|-.  ..+...           +|...+    +    ....+. ++++.|+|. |.+    .++.+... ..|+.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999842  111111           111000    0    111122 789999998 664    12233333 468888


Q ss_pred             HHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHHHH
Q psy5810         145 LWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV--YKTDELLVGIARQ  208 (250)
Q Consensus       145 i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~--~~I~~lf~~l~~~  208 (250)
                      +.+    .++|+++|.||.|-....  +.+...++..+++.+++.+|+..-  ..|..+++.++-.
T Consensus       176 Lk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       176 LKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             HHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            865    489999999999932211  344455667778999888887664  3566666655543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0462|consensus

Probab=98.68  E-value=2e-07  Score=84.50  Aligned_cols=145  Identities=14%  Similarity=0.124  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc---------cc------ccccCcee--------------EEEEEeCCCCc--cc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN---------FV------QTYHPDVF--------------FIVYSDTNHTQ--RC  101 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~------~~~~~~~~--------------~i~i~Dt~g~~--~~  101 (250)
                      .+.||-.-.-|||||.- +++...+.         +.      ..-|.|+.              .+.++||||.-  ..
T Consensus        62 NfsIIAHVDHGKSTLaD-rLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~  140 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLAD-RLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG  140 (650)
T ss_pred             ceEEEEEecCCcchHHH-HHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence            38899999999999997 65543221         11      11222221              45678999963  22


Q ss_pred             cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH
Q psy5810         102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY  181 (250)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  181 (250)
                      -....+.          -++|++||.|....---+.+.++..-+.     .+..+|.|.||+|++..+   +++......
T Consensus       141 EVsRsla----------ac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad---pe~V~~q~~  202 (650)
T KOG0462|consen  141 EVSRSLA----------ACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD---PERVENQLF  202 (650)
T ss_pred             eehehhh----------hcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC---HHHHHHHHH
Confidence            2223333          5899999999988544444444333332     467889999999997643   344443333


Q ss_pred             H-hC---CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         182 A-WG---VKFVETSVGLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       182 ~-~~---~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      + ++   .+.+.+||++|.|+.+++..+++.+.......
T Consensus       203 ~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  203 ELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             HHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            2 23   35899999999999999999999887654443

>PRK00007 elongation factor G; Reviewed

Probab=98.66  E-value=2.1e-07  Score=89.48  Aligned_cols=130  Identities=11%  Similarity=-0.101  Sum_probs=75.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc---cc---c------------ccccCcee-----------EEEEEeCCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NF---V------------QTYHPDVF-----------FIVYSDTNHTQR  100 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~---~------------~~~~~~~~-----------~i~i~Dt~g~~~  100 (250)
                      +..+|+|+|..++|||||++ +++...+   ..   .            ..-+.++.           .+.+.||+|...
T Consensus         9 ~Irni~iiG~~~~GKsTL~~-~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTE-RILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHH-HHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            34469999999999999999 6753111   10   0            11122221           577899999643


Q ss_pred             ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH
Q psy5810         101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA  180 (250)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  180 (250)
                      ..        .+...+++.+|++++|.|......-+...-|. .+.+    .++|++++.||+|+.+..  ......++.
T Consensus        88 f~--------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~----~~~p~iv~vNK~D~~~~~--~~~~~~~i~  152 (693)
T PRK00007         88 FT--------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK----YKVPRIAFVNKMDRTGAD--FYRVVEQIK  152 (693)
T ss_pred             HH--------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCCCCCC--HHHHHHHHH
Confidence            11        12222333789999999988764444333232 2322    468999999999986422  122223333


Q ss_pred             HHhCC----eEEEEecCCC
Q psy5810         181 YAWGV----KFVETSVGLV  195 (250)
Q Consensus       181 ~~~~~----~~~evSa~~~  195 (250)
                      +.++.    ..+++|+.++
T Consensus       153 ~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        153 DRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHhCCCeeeEEecCccCCc
Confidence            44443    2456677665

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=6.5e-08  Score=85.16  Aligned_cols=141  Identities=16%  Similarity=0.100  Sum_probs=80.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc-----------cccC--------------------cee---------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYHP--------------------DVF---------   88 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~~--------------------~~~---------   88 (250)
                      -.+++++++|...+|||||+- +++...+.+..           ..+.                    |++         
T Consensus         5 Kph~nl~~iGHVD~GKSTl~G-rLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVG-RLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhh-hhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            456789999999999999998 55443111110           0111                    111         


Q ss_pred             --EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hHHH--HHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 --FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFKK--AEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 --~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~~--~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                        .+.|.|++|...     |...++...-   .||++|||.|..+.+   +|..  .....-.+.+..  .-..+|++.|
T Consensus        84 k~~~tIiDaPGHrd-----FvknmItGas---qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavN  153 (428)
T COG5256          84 KYNFTIIDAPGHRD-----FVKNMITGAS---QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVN  153 (428)
T ss_pred             CceEEEeeCCchHH-----HHHHhhcchh---hccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEE
Confidence              467889999431     1111111111   699999999998863   2211  111111222221  2234889999


Q ss_pred             CCCccCCCccCHHHH----HHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810         162 KADLERRRQVTHSDG----KKLAYAWG-----VKFVETSVGLVYKTDE  200 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~----~~~~~~~~-----~~~~evSa~~~~~I~~  200 (250)
                      |.|+.+..+-..++.    ..+.+..|     ++|+++||..|.|+.+
T Consensus       154 KMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         154 KMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            999865322222222    22444444     4599999999999854

>KOG0082|consensus

Probab=98.64  E-value=4.3e-07  Score=79.38  Aligned_cols=115  Identities=14%  Similarity=0.091  Sum_probs=80.0

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHh----------HHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKT----------FKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~S----------f~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+.+.|++||.  +.-|.+.|.          +++++|||.++++.+-          ..+....++.|.....-.+.++
T Consensus       196 ~f~~~DvGGQRseRrKWihcFe----------~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsi  265 (354)
T KOG0082|consen  196 KFRMFDVGGQRSERKKWIHCFE----------DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSI  265 (354)
T ss_pred             ceEEEeCCCcHHHhhhHHHhhc----------CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcE
Confidence            45579999985  777888888          9999999999877421          2223446666666555568999


Q ss_pred             EEEeeCCCccCC---------------CccCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         157 ILVANKADLERR---------------RQVTHSDGKKLAYAW----------GVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       157 ilv~nK~Dl~~~---------------~~v~~~~~~~~~~~~----------~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ||..||.|+=++               ..-+.+++..+....          .+-+..+.|.+-.+|+.+|..+...+.+
T Consensus       266 iLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  266 ILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             EEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            999999998111               012344554443221          1224577999999999999999988876


Q ss_pred             hh
Q psy5810         212 NK  213 (250)
Q Consensus       212 ~~  213 (250)
                      ..
T Consensus       346 ~n  347 (354)
T KOG0082|consen  346 NN  347 (354)
T ss_pred             HH
Confidence            43

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.61  E-value=2e-07  Score=83.23  Aligned_cols=145  Identities=14%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             EEEEcCCCCchhhhchhhhccc---------cccccccc------cCcee----------------EEEEEeCCCCcccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ---------VENFVQTY------HPDVF----------------FIVYSDTNHTQRCL  102 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~---------~~~~~~~~------~~~~~----------------~i~i~Dt~g~~~~~  102 (250)
                      +.||-.=.-|||||.- |++..         ..++.+++      |.|+.                .+.+.||||.-.. 
T Consensus        12 FsIIAHIDHGKSTLaD-Rlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF-   89 (603)
T COG0481          12 FSIIAHIDHGKSTLAD-RLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-   89 (603)
T ss_pred             eEEEEEecCCcchHHH-HHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce-
Confidence            7777777889999997 65442         11122222      22222                4567899986311 


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLAY  181 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~  181 (250)
                             .+|.-.+++.+.+++||.|.+..-.-+.+.+.+.-+.     .+.-+|-|.||+||+..   +++.. .+.-.
T Consensus        90 -------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A---dpervk~eIe~  154 (603)
T COG0481          90 -------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA---DPERVKQEIED  154 (603)
T ss_pred             -------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC---CHHHHHHHHHH
Confidence                   0111112226899999999998655455555444442     46778888999999753   23333 33444


Q ss_pred             HhCCe---EEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         182 AWGVK---FVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       182 ~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      -.|++   .+.+||++|.||+++++.++..+......
T Consensus       155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             HhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence            45664   78999999999999999999988765543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.61  E-value=6.6e-07  Score=79.01  Aligned_cols=45  Identities=18%  Similarity=0.128  Sum_probs=30.5

Q ss_pred             CcEEEEeeCCCccC-CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         154 KAVILVANKADLER-RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       154 ~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .|+++++|+.|..- ...--.++..+++.+.+.+++++||.--..+
T Consensus       200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~el  245 (364)
T PRK09601        200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEAEI  245 (364)
T ss_pred             CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            79999999998521 1111235566677777888999998644333

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=1e-07  Score=74.55  Aligned_cols=112  Identities=21%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|++++|+|.+++....+ ..+...+    ...+.|+++|+||+|+.+....  .+...+....+.+++++||+++.|+
T Consensus        12 ~aD~vl~V~D~~~~~~~~~-~~l~~~~----~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi   84 (156)
T cd01859          12 ESDVVLEVLDARDPELTRS-RKLERYV----LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGT   84 (156)
T ss_pred             hCCEEEEEeeCCCCcccCC-HHHHHHH----HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccH
Confidence            7999999999988654332 1222222    1246899999999998432111  1111233445678999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhH--HHHHhhhhhhhhhhhhccC
Q psy5810         199 DELLVGIARQAGLNKKRNKL--LAKKQKKMASYINNIKQFK  237 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  237 (250)
                      +++++.+...+........-  -.....+.+..++.+.+.+
T Consensus        85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~  125 (156)
T cd01859          85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH  125 (156)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            99999998776532111000  0111135566666666543

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8.6e-07  Score=77.54  Aligned_cols=71  Identities=13%  Similarity=0.001  Sum_probs=49.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc----cccccccCcee-------------------------EEEEEeCCCCc---
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQTYHPDVF-------------------------FIVYSDTNHTQ---   99 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~~~~~~~~-------------------------~i~i~Dt~g~~---   99 (250)
                      +++.|+|.||||||||+| .++....    ..-.|+.|..+                         .+.+.|.+|--   
T Consensus         3 l~~GIVGlPNVGKSTlFn-AlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFN-ALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             ceeEEecCCCCcHHHHHH-HHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            579999999999999998 7776421    12245555554                         46678988843   


Q ss_pred             ---cccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810         100 ---RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI  130 (250)
Q Consensus       100 ---~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~  130 (250)
                         +.+...|+.       -+|++|+++.|.|..
T Consensus        82 s~GeGLGNkFL~-------~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLD-------NIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHH-------hhhhcCeEEEEEEec
Confidence               455555443       223789999998865

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.53  E-value=1.2e-07  Score=79.27  Aligned_cols=82  Identities=24%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH---HHHH----HhCCeEEEEe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK---KLAY----AWGVKFVETS  191 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~---~~~~----~~~~~~~evS  191 (250)
                      -+|.+++|.-..-.+..+-++.=+-+         ++=++|.||.|.+.... ...+..   .+..    .+..+++.+|
T Consensus       142 ~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~ts  211 (266)
T PF03308_consen  142 MADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTS  211 (266)
T ss_dssp             TSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred             hcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEE
Confidence            37889888876655544433322222         24477889999643211 111111   1111    1234799999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~  210 (250)
                      |.++.||+++++.+.+.-.
T Consensus       212 A~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  212 ALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHH
Confidence            9999999999999886433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01858 NGP_1 NGP-1

Probab=98.50  E-value=3.2e-07  Score=71.88  Aligned_cols=117  Identities=20%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             ccCCCcEEEEEEeCCCHHh--HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         116 QTYHPDVFVIVYSVIERKT--FKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~S--f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                      ++.++|++++|.|..++..  ...+.+++..     ...+.|+++|.||+|+.+...+ ......+.+.+....+.+||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-----~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-----EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHh-----ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            4448999999999998743  2223333322     1245899999999998532111 111222222222235789999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhhhh----HHHHHhhhhhhhhhhhhccCC
Q psy5810         194 LVYKTDELLVGIARQAGLNKKRNK----LLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      ++.|++++.+.+...+...+....    .-.......++.++.+.+.++
T Consensus        79 ~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858          79 NPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             ccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            999999999988764432111000    012222478888888887655

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.49  E-value=5.1e-07  Score=84.36  Aligned_cols=115  Identities=14%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccccccc-Cce-----------eEEEEEeCCCCccccCCCccc----cccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDV-----------FFIVYSDTNHTQRCLTPMPFC----SQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~-----------~~i~i~Dt~g~~~~~~~~~~~----~~~~~~  114 (250)
                      .++|+++|.+||||||++| .+++.......... .+.           ..+.++||+|-..........    ..+..+
T Consensus       118 slrIvLVGKTGVGKSSLIN-SILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATIN-SIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            3669999999999999999 77764111111110 111           157889999976432111111    112223


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCcc
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLE  166 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~  166 (250)
                      ++...+|++|+|..++.......-..+++.+....+..= .-+|||.|+.|..
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l  249 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA  249 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence            332368999999988654332222356666655443221 2488899999964

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.48  E-value=4.7e-07  Score=80.52  Aligned_cols=110  Identities=25%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH----HHHHhCC---eEEEEe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK----LAYAWGV---KFVETS  191 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~~---~~~evS  191 (250)
                      .++++++|+|+.+..     ..|..++.+..  .+.|+++|+||+|+.. +.+..++..+    ++++.++   .++++|
T Consensus        63 ~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS  134 (360)
T TIGR03597        63 SNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVS  134 (360)
T ss_pred             CCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEec
Confidence            789999999997654     33555554432  3679999999999854 3344444444    4566776   389999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      |++|.|++++|+.+.+.. . ....-.-.......+++++.+.++..
T Consensus       135 Ak~g~gv~eL~~~l~~~~-~-~~~v~~vG~~nvGKStliN~l~~~~~  179 (360)
T TIGR03597       135 AKKGNGIDELLDKIKKAR-N-KKDVYVVGVTNVGKSSLINKLLKQNN  179 (360)
T ss_pred             CCCCCCHHHHHHHHHHHh-C-CCeEEEECCCCCCHHHHHHHHHhhcc
Confidence            999999999999986531 1 00111111222477888888887543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.47  E-value=2.6e-07  Score=72.86  Aligned_cols=67  Identities=21%  Similarity=0.168  Sum_probs=38.4

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                      .+.++||||-.......  ......+.  ..+|++|+|.+.++..+-.+...|.+....    ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~--~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEH--TEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTT--SHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhh--HHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            35578999863211000  01222222  189999999999996655555555554432    334488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1144|consensus

Probab=98.45  E-value=1.8e-06  Score=80.76  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=89.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccc------cccccccccCcee-----------------------EEEEEeCCCCc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF-----------------------FIVYSDTNHTQ   99 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~-----------------------~i~i~Dt~g~~   99 (250)
                      .+..-++|+|.-..|||-|+- .+.+.      .+.....+|.|+.                       -+.++||+|.+
T Consensus       473 lRSPIcCilGHVDTGKTKlld-~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLD-KIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             cCCceEEEeecccccchHHHH-HhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            344459999999999999996 44442      1222334444443                       35678999976


Q ss_pred             c--ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc-cCCC----
Q psy5810         100 R--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL-ERRR----  169 (250)
Q Consensus       100 ~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~----  169 (250)
                      .  .+......          -||.+|+|.|+.+   +++.+.+.    .+ +   ..+.|+|+..||+|. .+..    
T Consensus       552 sFtnlRsrgss----------lC~~aIlvvdImhGlepqtiESi~----lL-R---~rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  552 SFTNLRSRGSS----------LCDLAILVVDIMHGLEPQTIESIN----LL-R---MRKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             hhhhhhhcccc----------ccceEEEEeehhccCCcchhHHHH----HH-H---hcCCCeEEeehhhhhhcccccCCC
Confidence            2  33333333          5899999999987   34444433    12 2   258999999999995 2111    


Q ss_pred             -ccCH-------HH-----------HHHHHHH-hC-------------CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         170 -QVTH-------SD-----------GKKLAYA-WG-------------VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       170 -~v~~-------~~-----------~~~~~~~-~~-------------~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                       .+-.       ..           ..+|+.. ++             +.++++||.+|+||.+|+.+|++....
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence             1100       00           1111110 11             236899999999999999999976544

>smart00053 DYNc Dynamin, GTPase

Probab=98.42  E-value=7.4e-07  Score=74.65  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCccccC---CC----ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLT---PM----PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~---~~----~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .+.+.||+|-.....   +.    ....+.+.|++- ..+++++|.|.+...+-.+...+.+.+    .....|+++|.|
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT  200 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT  200 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence            456789999752211   11    111222233321 346889999876532222222333333    235789999999


Q ss_pred             CCCccC
Q psy5810         162 KADLER  167 (250)
Q Consensus       162 K~Dl~~  167 (250)
                      |.|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.38  E-value=2.1e-06  Score=67.16  Aligned_cols=113  Identities=18%  Similarity=0.021  Sum_probs=68.0

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                      |++++|.|..++.+...  .|+..  ......+.|+++|.||+|+.+...+ .+....+....+..++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            68999999998866543  23331  1112257899999999998432111 1111123233355689999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccCC
Q psy5810         201 LLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       201 lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  238 (250)
                      +.+.+..............            .....+.+.+++.+.+.+.
T Consensus        76 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~  125 (155)
T cd01849          76 KESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK  125 (155)
T ss_pred             HHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc
Confidence            9999877643221111000            0011367777888877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.38  E-value=4.1e-06  Score=71.21  Aligned_cols=102  Identities=21%  Similarity=0.159  Sum_probs=57.9

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.|..|.|.-++-.....           -+|.+++|.=..-.+..+-++.=+.         ++.=++|.||.|....
T Consensus       145 DvIIVETVGvGQsev~I~~-----------~aDt~~~v~~pg~GD~~Q~iK~Gim---------EiaDi~vINKaD~~~A  204 (323)
T COG1703         145 DVIIVETVGVGQSEVDIAN-----------MADTFLVVMIPGAGDDLQGIKAGIM---------EIADIIVINKADRKGA  204 (323)
T ss_pred             CEEEEEecCCCcchhHHhh-----------hcceEEEEecCCCCcHHHHHHhhhh---------hhhheeeEeccChhhH
Confidence            4556677664433333332           3788887765544444444432222         3344777899996431


Q ss_pred             CccCHH---HHHHHHH----H--hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         169 RQVTHS---DGKKLAY----A--WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       169 ~~v~~~---~~~~~~~----~--~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      . ....   .+..+..    .  +..+.+.+||..|+|++++++.+.+....
T Consensus       205 ~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         205 E-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             H-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            1 1111   1111111    1  23458999999999999999998875443

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.30  E-value=4.5e-06  Score=72.34  Aligned_cols=135  Identities=15%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc-cc--------------------------------ccccCcee--------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FV--------------------------------QTYHPDVF--------   88 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~--------------------------------~~~~~~~~--------   88 (250)
                      ..++++-+|.-.-||||||- |++..+.. +.                                ...|.|+.        
T Consensus         5 ~lLRfiTcGSVDDGKSTLIG-RLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIG-RLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             cceeEEEeccccCcchhhhh-hhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            35779999999999999998 65553111 10                                11122221        


Q ss_pred             ---EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHH--HHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          89 ---FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAE--DMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        89 ---~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~--~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                         ++.+-||||.++....|.--      .+  .||++|++.|.-.. -++..+  .++..+.     .=..++|..||+
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTG------AS--TadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvAVNKm  149 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATG------AS--TADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVAVNKM  149 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcc------cc--cccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEEEeee
Confidence               67788999987544444321      01  58999999998432 111211  1233231     123488999999


Q ss_pred             CccCCCccC----HHHHHHHHHHhCC---eEEEEecCCCCCHH
Q psy5810         164 DLERRRQVT----HSDGKKLAYAWGV---KFVETSVGLVYKTD  199 (250)
Q Consensus       164 Dl~~~~~v~----~~~~~~~~~~~~~---~~~evSa~~~~~I~  199 (250)
                      ||.+-.+-.    ..+-..|+..+++   .++++||+.|.||-
T Consensus       150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            995422111    2234557777775   48999999999973

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.26  E-value=2.1e-06  Score=66.04  Aligned_cols=74  Identities=23%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             cCCCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                      +.++|++++|+|..++.+..  .+.+|+...     ..+.|+++|.||+|+.++..  ..+..++.+..+..++++||++
T Consensus         9 i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           9 VERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecC
Confidence            34899999999999887644  344454432     14789999999999854221  2233445556677899999999


Q ss_pred             CCC
Q psy5810         195 VYK  197 (250)
Q Consensus       195 ~~~  197 (250)
                      +.+
T Consensus        82 ~~~   84 (141)
T cd01857          82 ENA   84 (141)
T ss_pred             CCc
Confidence            875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.23  E-value=3.2e-06  Score=67.23  Aligned_cols=86  Identities=21%  Similarity=0.131  Sum_probs=57.1

Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      ++.+||.+++|+|.+++....+. .++..+      .+.|+++|.||+|+.+...+  .+..++.+..+..++.+||+++
T Consensus        16 ~i~~aD~il~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~   86 (171)
T cd01856          16 KLKLVDLVIEVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSG   86 (171)
T ss_pred             HHhhCCEEEEEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCc
Confidence            34489999999999876543221 122222      35789999999998532111  1111222333456899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .|++++...+...+.
T Consensus        87 ~gi~~L~~~l~~~l~  101 (171)
T cd01856          87 KGVKKLLKAAKKLLK  101 (171)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999999887753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=3.6e-06  Score=72.08  Aligned_cols=149  Identities=16%  Similarity=0.150  Sum_probs=91.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc-cccccccccCce---------------------------------------eEE
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDV---------------------------------------FFI   90 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~---------------------------------------~~i   90 (250)
                      .+.|.++|.-.-|||||.. .+.+- +..+.+.....+                                       ..+
T Consensus        10 ~vNIG~vGHVdHGKtTlv~-AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257          10 EVNIGMVGHVDHGKTTLTK-ALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             ceEeeeeeecccchhhhee-hhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            4559999999999999996 66552 112221111111                                       045


Q ss_pred             EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .+.|.+|.+--+..+..-        ++-.|+++||.+.+.+    ++-+.+.  ..+|.     .-..+|++-||+|+.
T Consensus        89 SfVDaPGHe~LMATMLsG--------AAlMDgAlLvIaANEpcPQPQT~EHl~--AleIi-----gik~iiIvQNKIDlV  153 (415)
T COG5257          89 SFVDAPGHETLMATMLSG--------AALMDGALLVIAANEPCPQPQTREHLM--ALEII-----GIKNIIIVQNKIDLV  153 (415)
T ss_pred             EEeeCCchHHHHHHHhcc--------hhhhcceEEEEecCCCCCCCchHHHHH--HHhhh-----ccceEEEEeccccee
Confidence            566777665222222111        0024999999998774    4444432  12221     234589999999984


Q ss_pred             C-CCc-cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         167 R-RRQ-VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       167 ~-~~~-v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      . ++. -.+++..+|.+.-   +.|++++||..+.||+.+++.+.+.+......
T Consensus       154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            3 111 2345566666533   57899999999999999999999888765443

>KOG1486|consensus

Probab=98.21  E-value=4.9e-05  Score=63.21  Aligned_cols=147  Identities=17%  Similarity=0.059  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCcccc--CCCcccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQT  117 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~  117 (250)
                      .+|++||-|.||||||+. .+...... ...|..+.            ..+++.|.||.-..-  ...--+..+..   +
T Consensus        63 aRValIGfPSVGKStlLs-~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav---A  137 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLS-KITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV---A  137 (364)
T ss_pred             eEEEEecCCCccHHHHHH-Hhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE---e
Confidence            449999999999999996 66653111 11121111            178899999864211  11111212222   2


Q ss_pred             CCCcEEEEEEeCCCHHhHHH-HHHHHHHHHh--hhCC-------------------------------------------
Q psy5810         118 YHPDVFVIVYSVIERKTFKK-AEDMLKTLWD--SKYI-------------------------------------------  151 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~--~~~~-------------------------------------------  151 (250)
                      +.||.++.|.|.+..+.-.. +...++.+.-  ....                                           
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence            37999999999988653322 2222222210  0000                                           


Q ss_pred             -------------------CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         152 -------------------GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       152 -------------------~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                                         ..++++-|-||+|     +++.++..++|+.-+  -+-+|+.-..|++.+++.+-..+.
T Consensus       218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence                               1267788888888     577888888887544  456777888899888888877654

>PTZ00416 elongation factor 2; Provisional

Probab=98.12  E-value=6e-06  Score=80.98  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccc----------c------ccccCc---------------------eeEEEEEeC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENF----------V------QTYHPD---------------------VFFIVYSDT   95 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~----------~------~~~~~~---------------------~~~i~i~Dt   95 (250)
                      +|+|+|..++|||||+. +++......          .      ..-+.+                     -..+.+.||
T Consensus        21 ni~iiGh~d~GKTTL~~-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt   99 (836)
T PTZ00416         21 NMSVIAHVDHGKSTLTD-SLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS   99 (836)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence            59999999999999998 665421100          0      000000                     113668899


Q ss_pred             CCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          96 NHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        96 ~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      +|......        +...+++.+|++|+|.|..+.-.-....-| ..+.+    .++|++++.||+|+.
T Consensus       100 PG~~~f~~--------~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        100 PGHVDFSS--------EVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             CCHHhHHH--------HHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence            98753111        112222379999999999885433332223 33322    468999999999985

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.11  E-value=1.3e-05  Score=68.76  Aligned_cols=112  Identities=17%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ..+|++++|.|..++.+..+  .++.+..     .+.|+++|.||+|+.+....  ....++.+..+.+++.+||+++.|
T Consensus        20 ~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~g   90 (276)
T TIGR03596        20 KLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKKGKG   90 (276)
T ss_pred             hhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCCccc
Confidence            48999999999987754332  1222221     25799999999998532111  111112233456789999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHH------------HHhhhhhhhhhhhhccCC
Q psy5810         198 TDELLVGIARQAGLNKKRNKLLA------------KKQKKMASYINNIKQFKW  238 (250)
Q Consensus       198 I~~lf~~l~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  238 (250)
                      +.++.+.+...+...........            ......+++++.+.+++.
T Consensus        91 i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~  143 (276)
T TIGR03596        91 VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV  143 (276)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            99999988877654322111100            011367888888887764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.11  E-value=3e-06  Score=65.15  Aligned_cols=45  Identities=11%  Similarity=0.001  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHT   98 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~   98 (250)
                      +++++|.+|||||||+| ++.+... ......+.+..        .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLIN-ALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence            69999999999999999 7776421 11111111111        4578999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.10  E-value=5.9e-06  Score=81.16  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccc---------c-c----------cc---------ccC--------------ce
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN---------F-V----------QT---------YHP--------------DV   87 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~-~----------~~---------~~~--------------~~   87 (250)
                      .-+|+|+|..++|||||+. +++.....         . .          -+         ++.              .-
T Consensus        19 Irni~iiGhvd~GKTTL~~-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTD-SLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE   97 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHH-HHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence            3359999999999999998 66542110         0 0          00         000              01


Q ss_pred             eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ..+.+.||||........        ..+++.+|++|+|.|....-.-....-|. .+..    .++|++++.||+|..
T Consensus        98 ~~inliDtPGh~dF~~e~--------~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         98 YLINLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             eEEEEECCCCHHHHHHHH--------HHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence            245678999874222111        11122799999999998764433333332 2322    578999999999975

>PRK13796 GTPase YqeH; Provisional

Probab=98.07  E-value=2.1e-05  Score=70.15  Aligned_cols=108  Identities=25%  Similarity=0.251  Sum_probs=69.9

Q ss_pred             CCc-EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEE
Q psy5810         119 HPD-VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVET  190 (250)
Q Consensus       119 ~ad-~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~ev  190 (250)
                      .++ .+++|.|+.|..     ..|...+.+..  .+.|+++|+||+|+.. +....++..++    ++..++   .++.+
T Consensus        68 ~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~v  139 (365)
T PRK13796         68 DSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLI  139 (365)
T ss_pred             ccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence            345 889999998743     23555554432  3679999999999854 33444444444    555666   47999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      ||+++.|++++++.+.+....  .....-.......++++|++.++
T Consensus       140 SAk~g~gI~eL~~~I~~~~~~--~~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        140 SAQKGHGIDELLEAIEKYREG--RDVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             ECCCCCCHHHHHHHHHHhcCC--CeEEEEcCCCCcHHHHHHHHHhh
Confidence            999999999999999764211  11111122225778888888754

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.05  E-value=4.2e-05  Score=65.72  Aligned_cols=108  Identities=12%  Similarity=0.004  Sum_probs=55.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc--------cccCcee---------------EEEEEeCCCCccccCC---
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPDVF---------------FIVYSDTNHTQRCLTP---  104 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~~~---------------~i~i~Dt~g~~~~~~~---  104 (250)
                      .++|+|+|.+|+||||||| .+++.......        ....+..               .+.++||+|--..+..   
T Consensus         4 ~fnImVvG~sG~GKTTFIn-tL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFIN-TLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHH-HHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             eEEEEEECCCCCCHHHHHH-HHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4679999999999999998 77764111110        0111111               5668999982100000   


Q ss_pred             -----Ccc----ccccccccc-----c--CCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810         105 -----MPF----CSQVENFVQ-----T--YHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus       105 -----~~~----~~~~~~~~~-----~--~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                           .|.    ....++..+     .  ...|++++.++.+.. -+-.++ ..++.+.     ..+++|-|..|+|.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~  154 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADT  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccc
Confidence                 000    000000000     0  168999999997652 222233 2344442     45788889999996

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.05  E-value=2.8e-05  Score=69.08  Aligned_cols=82  Identities=22%  Similarity=0.200  Sum_probs=58.9

Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFVETSVGLVY  196 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~evSa~~~~  196 (250)
                      +++|.+++|.++..+-+...+..++..+..    .++|.++|.||+||.+..   .+....+.. ..+.+++.+|++++.
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            389999999999765566566666665533    577889999999996421   111222221 346789999999999


Q ss_pred             CHHHHHHHHH
Q psy5810         197 KTDELLVGIA  206 (250)
Q Consensus       197 ~I~~lf~~l~  206 (250)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888874

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.04  E-value=1.9e-05  Score=68.19  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ..+|++++|.|..++.+.++  .++.+..     .+.|+++|.||+|+.+...  .+...++.++.+.+++.+||+++.|
T Consensus        23 ~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~g   93 (287)
T PRK09563         23 KLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQG   93 (287)
T ss_pred             hhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCccc
Confidence            48999999999987754332  2233332     2679999999999853211  1111222234467789999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHH------------HHhhhhhhhhhhhhccCC
Q psy5810         198 TDELLVGIARQAGLNKKRNKLLA------------KKQKKMASYINNIKQFKW  238 (250)
Q Consensus       198 I~~lf~~l~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  238 (250)
                      +.++.+.+...+...........            ......+++++.+.+++.
T Consensus        94 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563         94 VKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence            99999988877654322111000            001367889999988765

>KOG0458|consensus

Probab=98.02  E-value=1.4e-05  Score=73.28  Aligned_cols=140  Identities=18%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc------------------cccc-------------cccc-----------Cce
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV------------------ENFV-------------QTYH-----------PDV   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~------------------~~~~-------------~~~~-----------~~~   87 (250)
                      .++.++++|.-.+|||||+- +++..-                  +...             ..-|           +.-
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG-~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMG-HLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             cceEEEEEeccccchhhhhh-HHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            56779999999999999996 533310                  0000             0001           111


Q ss_pred             eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH---HhHHH---HHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKK---AEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~---~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      ..+.+.|+||.......+...        +..||+++||.|.+-.   ..|+.   .++ ...+.+..  .-.-++++.|
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g--------~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiN  323 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISG--------ASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAIN  323 (603)
T ss_pred             eeEEEecCCCccccchhhhcc--------ccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEee
Confidence            156788999943222222211        1168999999998763   24431   122 22232332  2345899999


Q ss_pred             CCCccCCCccCHHHHHH----HH-HHhC-----CeEEEEecCCCCCHHHH
Q psy5810         162 KADLERRRQVTHSDGKK----LA-YAWG-----VKFVETSVGLVYKTDEL  201 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~----~~-~~~~-----~~~~evSa~~~~~I~~l  201 (250)
                      |.|+.+..+-..+++..    |. +..|     +.|++||+..|+|+...
T Consensus       324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            99986533322333322    33 3334     46999999999997543

>cd01858 NGP_1 NGP-1

Probab=98.00  E-value=7.4e-06  Score=64.12  Aligned_cols=24  Identities=8%  Similarity=0.023  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .+.|+++|.+|||||||+| ++.+.
T Consensus       102 ~~~v~~~G~~nvGKStliN-~l~~~  125 (157)
T cd01858         102 QISVGFIGYPNVGKSSIIN-TLRSK  125 (157)
T ss_pred             ceEEEEEeCCCCChHHHHH-HHhcC
Confidence            4569999999999999999 77763

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=97.99  E-value=9.8e-06  Score=69.25  Aligned_cols=73  Identities=14%  Similarity=0.048  Sum_probs=43.7

Q ss_pred             EEEEcCCCCchhhhchhhhccccccc----cccccCcee------------------------EEEEEeCCCCccccCCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF------------------------FIVYSDTNHTQRCLTPM  105 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~------------------------~i~i~Dt~g~~~~~~~~  105 (250)
                      |+|+|.||||||||+| ++++.....    ..|..+..+                        .+++.|+||-.+.....
T Consensus         1 igivG~PN~GKSTLfn-~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFN-ALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHH-HHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            5799999999999998 888753211    112222221                        37899999965322111


Q ss_pred             cccccccccc-ccCCCcEEEEEEeC
Q psy5810         106 PFCSQVENFV-QTYHPDVFVIVYSV  129 (250)
Q Consensus       106 ~~~~~~~~~~-~~~~ad~iilV~D~  129 (250)
                        ...-..+. .++++|++++|.|.
T Consensus        80 --~glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          80 --EGLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             --hHHHHHHHHHHHhCCEEEEEEeC
Confidence              00001111 22379999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG3887|consensus

Probab=97.98  E-value=0.00013  Score=60.40  Aligned_cols=146  Identities=10%  Similarity=0.024  Sum_probs=89.2

Q ss_pred             EEEEcCCCCchhhhchhhhccc-------------cccccccccCceeEEEEEeCCCCccccCCC-----cccccccccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ-------------VENFVQTYHPDVFFIVYSDTNHTQRCLTPM-----PFCSQVENFV  115 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~-------------~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~-----~~~~~~~~~~  115 (250)
                      |+++|...+||||+-+  .+-.             .....+++..+.-.+++||.|||-...-+.     .++       
T Consensus        30 ilLMG~rRsGKsSI~K--VVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~-------  100 (347)
T KOG3887|consen   30 ILLMGLRRSGKSSIQK--VVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR-------  100 (347)
T ss_pred             EEEEeecccCcchhhh--eeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh-------
Confidence            9999999999999974  2221             011122233344478999999996444333     344       


Q ss_pred             ccCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc-cCCCccC------HHHHHHHHHH----
Q psy5810         116 QTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL-ERRRQVT------HSDGKKLAYA----  182 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~v~------~~~~~~~~~~----  182 (250)
                         ++-++++|+|..+.  +.+..+.......  +...+++.+=+...|.|- .++-.+.      ......++..    
T Consensus       101 ---~~gALifvIDaQddy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~  175 (347)
T KOG3887|consen  101 ---GVGALIFVIDAQDDYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK  175 (347)
T ss_pred             ---ccCeEEEEEechHHHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence               78999999998764  3344444333333  345578888888999994 3322222      1112222221    


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ..+.|+-+|.- ...|.|.|..+++.+..+.+
T Consensus       176 v~vsf~LTSIy-DHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  176 VQVSFYLTSIY-DHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             ceEEEEEeeec-chHHHHHHHHHHHHHhhhch
Confidence            12346666554 55899999999988776544

>KOG0461|consensus

Probab=97.97  E-value=6.6e-05  Score=65.06  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc--ccccccc-----ccCcee--------------------EEEEEeCCCCcc---c
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQT-----YHPDVF--------------------FIVYSDTNHTQR---C  101 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~-----~~~~~~--------------------~i~i~Dt~g~~~---~  101 (250)
                      +.+.++|.-.+|||+|.. ++..-  +..|...     -+.+.+                    .+.+.|.+|...   .
T Consensus         8 ~N~GiLGHvDSGKTtLar-als~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLAR-ALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeEeeccCchHHHHH-HHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            569999999999999994 76542  1122211     122221                    345678887641   1


Q ss_pred             c-CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHH-HH
Q psy5810         102 L-TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLER--RRQVTHS-DG  176 (250)
Q Consensus       102 ~-~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~-~~  176 (250)
                      + ....            -.|..++|+|+.....-+..+- .+-++      --...|+|.||+|+-.  .|.-..+ ..
T Consensus        87 iiggaq------------iiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~  148 (522)
T KOG0461|consen   87 IIGGAQ------------IIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSA  148 (522)
T ss_pred             HHhhhh------------eeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHH
Confidence            1 1111            2588899999977422222111 22222      1234677788888632  2221112 22


Q ss_pred             HHHHHHh-------CCeEEEEecCCC----CCHHHHHHHHHHHHHhh
Q psy5810         177 KKLAYAW-------GVKFVETSVGLV----YKTDELLVGIARQAGLN  212 (250)
Q Consensus       177 ~~~~~~~-------~~~~~evSa~~~----~~I~~lf~~l~~~i~~~  212 (250)
                      .+..+.+       +.|++++||+.|    ++|.++.+.|-.++.+.
T Consensus       149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            2333322       268999999999    66777777666666554

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.96  E-value=1e-05  Score=78.39  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccc--------------------ccccC-----------ceeEEEEEeCCCCccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFV--------------------QTYHP-----------DVFFIVYSDTNHTQRC  101 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~--------------------~~~~~-----------~~~~i~i~Dt~g~~~~  101 (250)
                      .|+|+|..++|||||+. +++.......                    -++..           .-..+.+.||||....
T Consensus        22 ni~iigh~d~GKTTL~e-~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df  100 (731)
T PRK07560         22 NIGIIAHIDHGKTTLSD-NLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF  100 (731)
T ss_pred             EEEEEEeCCCCHHHHHH-HHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence            49999999999999998 6654211100                    00000           1124667899997642


Q ss_pred             cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .     .   +...+++.+|++|+|+|......-+....|.. ..+    .+.|.|++.||+|..
T Consensus       101 ~-----~---~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560        101 G-----G---DVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             H-----H---HHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH----cCCCeEEEEECchhh
Confidence            1     1   11112237999999999887543332233322 222    246789999999974

>cd01859 MJ1464 MJ1464

Probab=97.93  E-value=1e-05  Score=63.10  Aligned_cols=46  Identities=11%  Similarity=-0.142  Sum_probs=31.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNH   97 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g   97 (250)
                      ..+++++|.+|+|||||++ ++.+.. ....++.+.+..        .+++|||+|
T Consensus       101 ~~~~~~ig~~~~Gkssl~~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIIN-ALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            4569999999999999998 777631 122223232221        467899998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.92  E-value=8.7e-06  Score=64.90  Aligned_cols=45  Identities=13%  Similarity=-0.076  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc-cccccccCce--------eEEEEEeCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV--------FFIVYSDTNH   97 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~--------~~i~i~Dt~g   97 (250)
                      ++++++|.+|||||||+| ++.+... ......|.|.        ..++++||||
T Consensus       118 ~~~~~vG~pnvGKSslin-~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG  171 (172)
T cd04178         118 ITVGVVGFPNVGKSSLIN-SLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG  171 (172)
T ss_pred             cEEEEEcCCCCCHHHHHH-HHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence            679999999999999999 7776422 1222222222        1466788887

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.90  E-value=0.00013  Score=65.61  Aligned_cols=144  Identities=16%  Similarity=0.053  Sum_probs=89.5

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccc----------------cCcee-----------EEEEEeCCCCc--cccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTY----------------HPDVF-----------FIVYSDTNHTQ--RCLTP  104 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~----------------~~~~~-----------~i~i~Dt~g~~--~~~~~  104 (250)
                      |+||-.-.-|||||+. .++.+.+.|...-                |.|+-           +|.|.||+|.-  ..-..
T Consensus         8 IAIIAHVDHGKTTLVD-~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE   86 (603)
T COG1217           8 IAIIAHVDHGKTTLVD-ALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE   86 (603)
T ss_pred             eEEEEEecCCcchHHH-HHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence            8999999999999998 7777644444321                11111           78899999963  22222


Q ss_pred             CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHH---
Q psy5810         105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLA---  180 (250)
Q Consensus       105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~---  180 (250)
                      ....          =.|+++++.|..+..=- ..+-.+++..+    .+.+.|+|.||+|.+..|.- -.++...+.   
T Consensus        87 Rvl~----------MVDgvlLlVDA~EGpMP-QTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L  151 (603)
T COG1217          87 RVLS----------MVDGVLLLVDASEGPMP-QTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL  151 (603)
T ss_pred             hhhh----------hcceEEEEEEcccCCCC-chhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Confidence            2222          37999999999873211 11112222222    35666778899998764421 112222222   


Q ss_pred             ----HHhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhhh
Q psy5810         181 ----YAWGVKFVETSVGLVY----------KTDELLVGIARQAGLNK  213 (250)
Q Consensus       181 ----~~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~~  213 (250)
                          +.+++|++..||++|.          ++..+|+.+++.+....
T Consensus       152 ~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         152 GATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence                2356889999999875          47888888888776554

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.87  E-value=1.5e-05  Score=68.82  Aligned_cols=49  Identities=8%  Similarity=-0.105  Sum_probs=34.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ   99 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~   99 (250)
                      ..++++++|.+|||||||+| .+.+... ......|.|..        .++++||||-.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLIN-RLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence            34679999999999999999 7776422 22223333322        57789999974

>cd01856 YlqF YlqF

Probab=97.83  E-value=1.9e-05  Score=62.74  Aligned_cols=47  Identities=15%  Similarity=-0.092  Sum_probs=30.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-ccc----ccccCce----eEEEEEeCCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFV----QTYHPDV----FFIVYSDTNHT   98 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~----~~~~~~~----~~i~i~Dt~g~   98 (250)
                      .++++++|.+|||||||+| ++.+... ...    .|.....    ..+.+|||+|-
T Consensus       115 ~~~~~~~G~~~vGKstlin-~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLIN-RLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            3679999999999999998 7776311 111    1111111    15668999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.80  E-value=2.1e-05  Score=67.52  Aligned_cols=49  Identities=8%  Similarity=-0.091  Sum_probs=32.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCCc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHTQ   99 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~~   99 (250)
                      ..++++++|.+|||||||+| ++.+.. .......+.|..        .++++||||..
T Consensus       117 ~~~~~~~vG~~nvGKSslin-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~  174 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLIN-RLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGIL  174 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCcc
Confidence            34779999999999999999 777631 111122222211        56799999974

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.77  E-value=3.3e-05  Score=78.48  Aligned_cols=109  Identities=15%  Similarity=0.014  Sum_probs=64.3

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccc--------cccCcee-------EEEEEeCCCCccc----------cCCCccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPDVF-------FIVYSDTNHTQRC----------LTPMPFC  108 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~~~-------~i~i~Dt~g~~~~----------~~~~~~~  108 (250)
                      .+|||++|+||||+|. +- +..-...+        ..+.+..       +-.++||+|.+-.          .|..+..
T Consensus       114 YlviG~~gsGKtt~l~-~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~  191 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQ-NS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG  191 (1169)
T ss_pred             EEEECCCCCchhHHHH-hC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence            9999999999999996 32 21111111        1122221       4557899996511          1222221


Q ss_pred             cccccccccCCCcEEEEEEeCCCHH-----hH----HHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         109 SQVENFVQTYHPDVFVIVYSVIERK-----TF----KKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       109 ~~~~~~~~~~~ad~iilV~D~~~~~-----Sf----~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                       ....+..-+..+|+|+++|+.+.-     ..    ..++..+.++.+. -....|+.||.||+|+.
T Consensus       192 -~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       192 -LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             -HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhh
Confidence             112222223689999999986632     11    2345566666544 34589999999999974

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0468|consensus

Probab=97.74  E-value=5.3e-05  Score=70.54  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=62.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccC----------------cee----------------EEEEEeC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHP----------------DVF----------------FIVYSDT   95 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~----------------~~~----------------~i~i~Dt   95 (250)
                      .....|+++|.-+.|||+|+. -+...+. .+......                ++.                -+.+.||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D-~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMD-LLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             ceEEEEEEeeccccChhHHHH-hhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            344559999999999999996 5554311 01000000                000                3456788


Q ss_pred             CCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          96 NHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        96 ~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      +|.-..        +-|...+++-+|++++|+|+.+.-.++.- ..++..    ...+.|+++|.||.|.
T Consensus       205 PGHVnF--------~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha----iq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNF--------SDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA----IQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccc--------hHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH----HhccCcEEEEEehhHH
Confidence            875311        01111122268999999999988777543 333333    3368999999999995

>KOG2486|consensus

Probab=97.73  E-value=4.2e-05  Score=64.43  Aligned_cols=143  Identities=11%  Similarity=-0.029  Sum_probs=76.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc---cccccccCce--------eEEEEEeCCCC----c--------cccCCCc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDV--------FFIVYSDTNHT----Q--------RCLTPMP  106 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~--------~~i~i~Dt~g~----~--------~~~~~~~  106 (250)
                      +...++++|.+||||||||| -+.....   .-.+..+.+-        ..+++.|.+|-    +        ..++..|
T Consensus       135 ~~pe~~~~g~SNVGKSSLln-~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLN-DLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CCceeeeecCCcccHHHHHh-hhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence            44569999999999999998 5544200   0000111111        16778899982    1        1222223


Q ss_pred             cccccccccccCCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------CCccCHH----
Q psy5810         107 FCSQVENFVQTYHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------RRQVTHS----  174 (250)
Q Consensus       107 ~~~~~~~~~~~~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------~~~v~~~----  174 (250)
                      +.. .+      +---+++..|.+-+-  .-...-+|+.+       .++|+.+|.||||...      .++....    
T Consensus       214 ~le-R~------nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f  279 (320)
T KOG2486|consen  214 LLE-RE------NLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF  279 (320)
T ss_pred             HHh-hh------hhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence            221 11      122344455554431  11122234332       5899999999999631      1111111    


Q ss_pred             -HHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810         175 -DGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       175 -~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                       ..-+.+-....|++.+|+.++.|+++++-.+..
T Consensus       280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhccccceeccCCceeeecccccCceeeeeehhh
Confidence             111111222456888999999999988766553

>cd01855 YqeH YqeH

Probab=97.72  E-value=2.3e-05  Score=63.26  Aligned_cols=22  Identities=18%  Similarity=0.037  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..++++|.+|||||||+| .+.+
T Consensus       128 ~~~~~~G~~nvGKStliN-~l~~  149 (190)
T cd01855         128 GDVYVVGATNVGKSTLIN-ALLK  149 (190)
T ss_pred             CcEEEEcCCCCCHHHHHH-HHHH
Confidence            359999999999999999 7765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.69  E-value=0.00045  Score=60.45  Aligned_cols=70  Identities=13%  Similarity=0.120  Sum_probs=43.3

Q ss_pred             CCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      .++..++|.|.+-. +.+..+..    ..+    .-.+.-+|.||.|....    .-.+...+...++|+..++  +|++
T Consensus       232 ~p~~~~LVl~a~~g~~~~~~a~~----f~~----~~~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~  297 (318)
T PRK10416        232 APHEVLLVLDATTGQNALSQAKA----FHE----AVGLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEG  297 (318)
T ss_pred             CCceEEEEEECCCChHHHHHHHH----HHh----hCCCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCC
Confidence            46788899998753 23333222    211    11245677899995432    2235556677799988887  8888


Q ss_pred             HHHHH
Q psy5810         198 TDELL  202 (250)
Q Consensus       198 I~~lf  202 (250)
                      ++++-
T Consensus       298 ~~Dl~  302 (318)
T PRK10416        298 IDDLQ  302 (318)
T ss_pred             hhhCc
Confidence            86654

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.68  E-value=3.5e-05  Score=67.54  Aligned_cols=50  Identities=12%  Similarity=-0.116  Sum_probs=35.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ   99 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~   99 (250)
                      +..++++++|-|||||||||| ++.+... ......|.|-.        .+.++||||--
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN-~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLIN-RLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHH-HHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence            444679999999999999999 7887522 22223333332        56789999964

>PRK14974 cell division protein FtsY; Provisional

Probab=97.66  E-value=0.0003  Score=61.92  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=54.3

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ++.+.||+|.-..-...  ....+........|..++|.|.+-.. ..+.+..+...       -+ +--+|.||.|...
T Consensus       224 DvVLIDTaGr~~~~~~l--m~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~-~~giIlTKlD~~~  293 (336)
T PRK14974        224 DVVLIDTAGRMHTDANL--MDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VG-IDGVILTKVDADA  293 (336)
T ss_pred             CEEEEECCCccCCcHHH--HHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CC-CCEEEEeeecCCC
Confidence            46788999864211100  00111111112578899999986643 22222221111       12 3456679999754


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG  204 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~  204 (250)
                      .-    -.+...+...+.|+..++  +|++++++...
T Consensus       294 ~~----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        294 KG----GAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             Cc----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence            22    234455566789988776  79998776543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.66  E-value=2e-05  Score=61.80  Aligned_cols=21  Identities=5%  Similarity=0.143  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ++++|.+|||||||+| .+...
T Consensus        38 ~vl~G~SGvGKSSLiN-~L~~~   58 (161)
T PF03193_consen   38 SVLLGQSGVGKSSLIN-ALLPE   58 (161)
T ss_dssp             EEEECSTTSSHHHHHH-HHHTS
T ss_pred             EEEECCCCCCHHHHHH-HHHhh
Confidence            9999999999999999 77764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG1954|consensus

Probab=97.65  E-value=0.00014  Score=63.60  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=41.2

Q ss_pred             EEEEEeCCCCc----cccCCCc-cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          89 FIVYSDTNHTQ----RCLTPMP-FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        89 ~i~i~Dt~g~~----~~~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                      .+.|.||+|.-    +.+...| |....+=+..  .+|.++++||....+--++....+..+..    .+-.+-+|.||.
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKA  221 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKA  221 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccc
Confidence            56789999953    2232332 2222222222  79999999998765433334444444432    233466777999


Q ss_pred             Ccc
Q psy5810         164 DLE  166 (250)
Q Consensus       164 Dl~  166 (250)
                      |..
T Consensus       222 DqV  224 (532)
T KOG1954|consen  222 DQV  224 (532)
T ss_pred             ccc
Confidence            954

>KOG0448|consensus

Probab=97.61  E-value=0.00037  Score=65.29  Aligned_cols=46  Identities=20%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR  169 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  169 (250)
                      ++|++|+|....+..+..+ .+.+....+    .+..+.++-||+|.....
T Consensus       232 daDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasase  277 (749)
T KOG0448|consen  232 DADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASASE  277 (749)
T ss_pred             cCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhccc
Confidence            7999999998877655443 334444422    234478888999986543

>KOG1491|consensus

Probab=97.55  E-value=0.0001  Score=63.79  Aligned_cols=73  Identities=12%  Similarity=0.040  Sum_probs=47.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee------------------------EEEEEeCCCCc-
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF------------------------FIVYSDTNHTQ-   99 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~------------------------~i~i~Dt~g~~-   99 (250)
                      -..+|+.|+|.||||||||+| .+.+....    .-.|+.|...                        .+.++|++|-- 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fn-alT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFN-ALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHH-HHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            356789999999999999998 77775222    1133444332                        56789999853 


Q ss_pred             -----cccCCCccccccccccccCCCcEEEEEEeC
Q psy5810         100 -----RCLTPMPFCSQVENFVQTYHPDVFVIVYSV  129 (250)
Q Consensus       100 -----~~~~~~~~~~~~~~~~~~~~ad~iilV~D~  129 (250)
                           +.+...++.       -+|.+|+++-|.+.
T Consensus        97 GAs~G~GLGN~FLs-------~iR~vDaifhVVr~  124 (391)
T KOG1491|consen   97 GASAGEGLGNKFLS-------HIRHVDAIFHVVRA  124 (391)
T ss_pred             CcccCcCchHHHHH-------hhhhccceeEEEEe
Confidence                 444444433       12268888887664

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.53  E-value=0.00047  Score=59.00  Aligned_cols=71  Identities=17%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             CCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      .+|..++|.|.+-. +.++.+    ....+.   - .+.-+|.||.|....    .-.+.......+.|+..++  +|++
T Consensus       190 ~~~~~~LVl~a~~~~~~~~~~----~~f~~~---~-~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~  255 (272)
T TIGR00064       190 APDEVLLVLDATTGQNALEQA----KVFNEA---V-GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEK  255 (272)
T ss_pred             CCceEEEEEECCCCHHHHHHH----HHHHhh---C-CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCC
Confidence            37999999999753 333333    222211   1 245677899997432    2334556667789988887  8888


Q ss_pred             HHHHHH
Q psy5810         198 TDELLV  203 (250)
Q Consensus       198 I~~lf~  203 (250)
                      ++++-.
T Consensus       256 ~~dl~~  261 (272)
T TIGR00064       256 IDDLAP  261 (272)
T ss_pred             hHhCcc
Confidence            766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.52  E-value=0.0001  Score=57.53  Aligned_cols=24  Identities=8%  Similarity=0.038  Sum_probs=20.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ...++++|.+|||||||+| .+.+.
T Consensus       100 ~~~~~~~G~~~~GKstlin-~l~~~  123 (155)
T cd01849         100 SITVGVIGYPNVGKSSVIN-ALLNK  123 (155)
T ss_pred             CcEEEEEccCCCCHHHHHH-HHHcc
Confidence            4559999999999999999 77763

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.45  E-value=0.0019  Score=55.45  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      +.|-.++|+.+.+|+ +..-+..++--.    ...++..+++.||.|+.+......++........|.+.+.+|++++.+
T Consensus        79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~  154 (301)
T COG1162          79 NNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG  154 (301)
T ss_pred             ccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence            678888888888875 666666665544    236777788899999965333222455667777899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy5810         198 TDELLVGIARQAGL  211 (250)
Q Consensus       198 I~~lf~~l~~~i~~  211 (250)
                      +.++...+...+.-
T Consensus       155 ~~~l~~~l~~~~sv  168 (301)
T COG1162         155 LEELAELLAGKITV  168 (301)
T ss_pred             HHHHHHHhcCCeEE
Confidence            99999988865443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00055  Score=61.21  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccC-----------------------ce-----------eEEEEEeCCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP-----------------------DV-----------FFIVYSDTNHT   98 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~-----------------------~~-----------~~i~i~Dt~g~   98 (250)
                      .++||-.|.+|||||....++.+  ......|.                       .+           ..+.+.||||.
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfG--gaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFG--GAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhc--chhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            38999999999999997333331  11111111                       11           05678999997


Q ss_pred             ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      +..--.. |+    ...   -+|.++.|+|....-.-+.++  +-++.+   ..++||+-..||.|.+.
T Consensus        92 eDFSEDT-YR----tLt---AvDsAvMVIDaAKGiE~qT~K--LfeVcr---lR~iPI~TFiNKlDR~~  147 (528)
T COG4108          92 EDFSEDT-YR----TLT---AVDSAVMVIDAAKGIEPQTLK--LFEVCR---LRDIPIFTFINKLDREG  147 (528)
T ss_pred             cccchhH-HH----HHH---hhheeeEEEecccCccHHHHH--HHHHHh---hcCCceEEEeecccccc
Confidence            6322111 22    111   589999999987743322221  122333   36899999999999754

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.001  Score=59.50  Aligned_cols=140  Identities=17%  Similarity=0.121  Sum_probs=84.3

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc-------ccccccCcee-------EEEEEeCCCCccccCCCccccccccccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN-------FVQTYHPDVF-------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~-------~~~~~~~~~~-------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~  119 (250)
                      |+..|.=--|||||+. .+.+....       -..|++..+.       .+.+.|++|.++.+..+..-     .   -.
T Consensus         3 i~t~GhidHgkT~L~~-altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag-----~---~~   73 (447)
T COG3276           3 IGTAGHIDHGKTTLLK-ALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAG-----L---GG   73 (447)
T ss_pred             EEEeeeeeccchhhhh-hhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhh-----h---cC
Confidence            6777888889999996 77664111       1111121111       45578888876443322211     0   15


Q ss_pred             CcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh---CCeEEEEecC
Q psy5810         120 PDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW---GVKFVETSVG  193 (250)
Q Consensus       120 ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---~~~~~evSa~  193 (250)
                      .|.++||.|.++   +++-+.+. .++.+      .-.-.++|.+|+|..++..+ .+...+.....   +.+++.+|+.
T Consensus        74 ~d~alLvV~~deGl~~qtgEhL~-iLdll------gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~  145 (447)
T COG3276          74 IDYALLVVAADEGLMAQTGEHLL-ILDLL------GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAK  145 (447)
T ss_pred             CceEEEEEeCccCcchhhHHHHH-HHHhc------CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccc
Confidence            799999999965   34444432 12211      23346889999998653211 12222222222   3568999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.||+++-+.|...+.
T Consensus       146 ~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         146 TGRGIEELKNELIDLLE  162 (447)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999998774

>KOG1143|consensus

Probab=97.41  E-value=0.0024  Score=56.13  Aligned_cols=80  Identities=20%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------------------ccCHH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR------------------------QVTHS  174 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------~v~~~  174 (250)
                      ..|.+++|.+......+.. ++-+-.+..    -++|+.++.+|.|+....                        .-+.+
T Consensus       274 ~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~d  348 (591)
T KOG1143|consen  274 TPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKD  348 (591)
T ss_pred             CCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechH
Confidence            4788999998877654432 222233322    489999999999995431                        12233


Q ss_pred             HHHHHHHHh----CCeEEEEecCCCCCHHHHHH
Q psy5810         175 DGKKLAYAW----GVKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       175 ~~~~~~~~~----~~~~~evSa~~~~~I~~lf~  203 (250)
                      ++..-+++.    -.|++.+|+.+|++++-+-.
T Consensus       349 dAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  349 DAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             HHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            443333332    35789999999999765433

>PRK12288 GTPase RsgA; Reviewed

Probab=97.40  E-value=0.00011  Score=65.06  Aligned_cols=21  Identities=10%  Similarity=0.129  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ++++|.+||||||||| ++.+.
T Consensus       208 ~~~vG~sgVGKSTLiN-~Ll~~  228 (347)
T PRK12288        208 SIFVGQSGVGKSSLIN-ALLPE  228 (347)
T ss_pred             EEEECCCCCCHHHHHH-Hhccc
Confidence            8999999999999999 78764

>KOG0099|consensus

Probab=97.40  E-value=0.00041  Score=58.14  Aligned_cols=66  Identities=21%  Similarity=0.357  Sum_probs=46.3

Q ss_pred             EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810          90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAVI  157 (250)
Q Consensus        90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pii  157 (250)
                      +..+|.+||.  +.-|-..+.          +..++|+|...+.-          .-+.+....++.+++.+-...+.+|
T Consensus       204 FhMfDVGGQRDeRrKWIQcFn----------dvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvI  273 (379)
T KOG0099|consen  204 FHMFDVGGQRDERRKWIQCFN----------DVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVI  273 (379)
T ss_pred             eeeeccCCchhhhhhHHHHhc----------CccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhhee
Confidence            3458888884  666777777          88999999776542          2334444456666665555678899


Q ss_pred             EEeeCCCc
Q psy5810         158 LVANKADL  165 (250)
Q Consensus       158 lv~nK~Dl  165 (250)
                      |..||.|+
T Consensus       274 lFLNKqDl  281 (379)
T KOG0099|consen  274 LFLNKQDL  281 (379)
T ss_pred             EEecHHHH
Confidence            99999998

>KOG4273|consensus

Probab=97.37  E-value=0.00086  Score=55.86  Aligned_cols=144  Identities=15%  Similarity=0.175  Sum_probs=82.9

Q ss_pred             EEEEcCCCC--chhhhchhhhccccccccccccCc-eeEEEEEeCCCCc---------cccCCCccccccccccccCCCc
Q psy5810          54 FIVHSDTNH--TQRCLTSMPFCSQVENFVQTYHPD-VFFIVYSDTNHTQ---------RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        54 i~iiG~~~v--GKSsLi~~~~~~~~~~~~~~~~~~-~~~i~i~Dt~g~~---------~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      ++++|-+||  ||-+|+. ++..  ..|....... -..+.=|-....+         ..+...++.-..+...   ...
T Consensus         7 ~lv~g~sgvfsg~~~ll~-rl~s--~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~---pl~   80 (418)
T KOG4273|consen    7 ALVTGCSGVFSGDQLLLH-RLGS--EDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAE---PLQ   80 (418)
T ss_pred             EEEecccccccchHHHHH-Hhcc--hhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCccccc---cee
Confidence            789999999  9999997 7776  3333221111 1111112111110         1111111111111111   468


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCccCC------------------C---------c---
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLERR------------------R---------Q---  170 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~------------------~---------~---  170 (250)
                      ++++|||++....+..++.|+.-.    ..+. -.++-+|||.|....                  |         .   
T Consensus        81 a~vmvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise  156 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE  156 (418)
T ss_pred             eEEEEEeccchhhhHHHHhhcccc----ccccchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence            899999999999999999997743    1122 235678899985210                  0         0   


Q ss_pred             --------------cCHHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHH
Q psy5810         171 --------------VTHSDGKKLAYAWGVKFVETSVGLV------------YKTDELLVGIAR  207 (250)
Q Consensus       171 --------------v~~~~~~~~~~~~~~~~~evSa~~~------------~~I~~lf~~l~~  207 (250)
                                    .....+.+||.++|+.++|.+|.+.            .|++.+|..|-.
T Consensus       157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~a  219 (418)
T KOG4273|consen  157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNA  219 (418)
T ss_pred             cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhh
Confidence                          1123467889999999999999542            356777766654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.35  E-value=0.00079  Score=60.59  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=75.8

Q ss_pred             EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810          90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAVI  157 (250)
Q Consensus        90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pii  157 (250)
                      +.++|++||.  +.-|..++.          +++++|+|.++++-          ..+.+....++.+.....-.+.|++
T Consensus       238 ~~~~DvGGqr~eRkKW~~~F~----------~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii  307 (389)
T PF00503_consen  238 FRLIDVGGQRSERKKWIHCFE----------DVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPII  307 (389)
T ss_dssp             EEEEEETSSGGGGGGGGGGGT----------TESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred             cceecCCCCchhhhhHHHHhc----------cccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceE
Confidence            4689999985  778888888          89999999997642          2345555666777665555689999


Q ss_pred             EEeeCCCcc------CC----------Cc--cCHHHHHHHHHHh------------CCeEEEEecCCCCCHHHHHHHHHH
Q psy5810         158 LVANKADLE------RR----------RQ--VTHSDGKKLAYAW------------GVKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       158 lv~nK~Dl~------~~----------~~--v~~~~~~~~~~~~------------~~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      |+.||.|+=      ..          ..  -+.+.+..+....            .+.+..++|.+..++..+|+.+.+
T Consensus       308 l~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~  387 (389)
T PF00503_consen  308 LFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD  387 (389)
T ss_dssp             EEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred             EeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence            999999971      11          01  2345555554321            113568999999999999988875


Q ss_pred             H
Q psy5810         208 Q  208 (250)
Q Consensus       208 ~  208 (250)
                      .
T Consensus       388 ~  388 (389)
T PF00503_consen  388 I  388 (389)
T ss_dssp             H
T ss_pred             c
Confidence            4

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00038  Score=66.65  Aligned_cols=100  Identities=15%  Similarity=-0.022  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccc--c----------------ccCce------------eEEEEEeCCCCcccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ--T----------------YHPDV------------FFIVYSDTNHTQRCL  102 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--~----------------~~~~~------------~~i~i~Dt~g~~~~~  102 (250)
                      .|.|+|.-.+|||||.. +++...+....  .                -|.|+            ..+.+.||||.-...
T Consensus        12 NigI~aHidaGKTTltE-~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt   90 (697)
T COG0480          12 NIGIVAHIDAGKTTLTE-RILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT   90 (697)
T ss_pred             EEEEEeccCCChHHHHH-HHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence            49999999999999998 54332111110  0                01111            156688999863111


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                              .|...+++-+|++|+|+|....-..+.-.-|..     ....++|.+++.||.|..
T Consensus        91 --------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-----a~~~~vp~i~fiNKmDR~  141 (697)
T COG0480          91 --------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-----ADKYGVPRILFVNKMDRL  141 (697)
T ss_pred             --------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-----HhhcCCCeEEEEECcccc
Confidence                    111222226899999999987644443333433     233689999999999963

>PRK12289 GTPase RsgA; Reviewed

Probab=97.30  E-value=0.00019  Score=63.59  Aligned_cols=21  Identities=10%  Similarity=0.145  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ++|+|.+||||||||| .+...
T Consensus       175 ~v~iG~SgVGKSSLIN-~L~~~  195 (352)
T PRK12289        175 TVVAGPSGVGKSSLIN-RLIPD  195 (352)
T ss_pred             EEEEeCCCCCHHHHHH-HHcCc
Confidence            8999999999999999 77764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.28  E-value=0.00017  Score=60.80  Aligned_cols=22  Identities=5%  Similarity=0.095  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .++++|.+|||||||+| ++.+.
T Consensus       122 ~~~~~G~sgvGKStLiN-~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLIN-ALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHH-HHhhh
Confidence            38999999999999999 77764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.26  E-value=0.0011  Score=55.10  Aligned_cols=80  Identities=10%  Similarity=-0.019  Sum_probs=45.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc--ccccCce---------------eEEEEEeCCCCccccCCC-cccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--QTYHPDV---------------FFIVYSDTNHTQRCLTPM-PFCSQV  111 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~~~~~~~---------------~~i~i~Dt~g~~~~~~~~-~~~~~~  111 (250)
                      ...-|.|+|++++|||+|+| ++.+....|.  ++..++.               ..+.+.||+|....-... .+..  
T Consensus         6 ~v~vvsv~G~~~sGKS~llN-~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~--   82 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLN-HLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA--   82 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHH-HHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh--
Confidence            34459999999999999999 7777411322  1111111               256788999975322211 1110  


Q ss_pred             ccccccC--CCcEEEEEEeCCCHH
Q psy5810         112 ENFVQTY--HPDVFVIVYSVIERK  133 (250)
Q Consensus       112 ~~~~~~~--~ad~iilV~D~~~~~  133 (250)
                       ...++.  -++++|+..+.....
T Consensus        83 -~~~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          83 -RLFALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             -HHHHHHHHHhCEEEEeccCcccH
Confidence             111111  268888777765543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.26  E-value=0.00021  Score=63.59  Aligned_cols=21  Identities=19%  Similarity=0.045  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++++|.+|||||||+| ++..
T Consensus       156 ~v~~vG~~nvGKStliN-~l~~  176 (360)
T TIGR03597       156 DVYVVGVTNVGKSSLIN-KLLK  176 (360)
T ss_pred             eEEEECCCCCCHHHHHH-HHHh
Confidence            59999999999999999 7766

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.26  E-value=0.0019  Score=58.52  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=44.6

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|........  ...........+++.++||.|.+-...-.   .....+.+    .-.+--+|.||.|....
T Consensus       184 DvViIDTaGr~~~d~~l--m~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~----~~~~~g~IlTKlD~~ar  254 (429)
T TIGR01425       184 DIIIVDTSGRHKQEDSL--FEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKD----SVDVGSVIITKLDGHAK  254 (429)
T ss_pred             CEEEEECCCCCcchHHH--HHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHh----ccCCcEEEEECccCCCC
Confidence            56789999964211111  01111111222678999999987542221   11222211    12356677899997432


Q ss_pred             CccCHHHHHHHHHHhCCeEEEE
Q psy5810         169 RQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                      -    -.+.......+.|+..+
T Consensus       255 g----G~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       255 G----GGALSAVAATKSPIIFI  272 (429)
T ss_pred             c----cHHhhhHHHHCCCeEEE
Confidence            1    12334445567775444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00092 GTP-binding protein YchF

Probab=97.25  E-value=0.00055  Score=60.72  Aligned_cols=71  Identities=11%  Similarity=-0.025  Sum_probs=45.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc-c----ccccccCcee------------------------EEEEEeCCCCcc--
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQTYHPDVF------------------------FIVYSDTNHTQR--  100 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~~~~~~~~------------------------~i~i~Dt~g~~~--  100 (250)
                      +|+.|+|.||||||||++ .+++... .    ...|+.|..+                        .+.+.|.||--+  
T Consensus         3 lk~GivGlPn~GKSTlfn-aLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFA-ATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHH-HHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            679999999999999998 7877533 2    1123344443                        356778888532  


Q ss_pred             ----ccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810         101 ----CLTPMPFCSQVENFVQTYHPDVFVIVYSVI  130 (250)
Q Consensus       101 ----~~~~~~~~~~~~~~~~~~~ad~iilV~D~~  130 (250)
                          .+...++.       -++.+|++++|.|..
T Consensus        82 s~g~Glgn~fL~-------~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLA-------NIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHH-------HHHhCCEEEEEEeCC
Confidence                22222222       122799999999874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.23  E-value=0.0027  Score=55.71  Aligned_cols=23  Identities=4%  Similarity=0.141  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      +.|+++|.+|.|||||+| .+++.
T Consensus        24 f~im~~G~sG~GKttfiN-tL~~~   46 (373)
T COG5019          24 FTIMVVGESGLGKTTFIN-TLFGT   46 (373)
T ss_pred             eEEEEecCCCCchhHHHH-hhhHh
Confidence            459999999999999999 77764

>KOG0447|consensus

Probab=97.22  E-value=0.005  Score=56.66  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             EEEEEeCCCCccccCCCc-------cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLTPMP-------FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~-------~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      +..+.|.||.....+...       ...+-..|++  +.+++|+|+.=.   |.+.-+.....+....++.+.-.|+|.+
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~--NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLT  487 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ--NPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLT  487 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhc--CCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence            445688888643322221       1223334555  899999997422   2222222333444445666788999999


Q ss_pred             CCCccCCCccCHHHHHHHHHH
Q psy5810         162 KADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      |.|+.+...-+++.+++....
T Consensus       488 KVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  488 KVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             ecchhhhccCCHHHHHHHHhc
Confidence            999977666778877776653

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.00061  Score=68.31  Aligned_cols=109  Identities=15%  Similarity=0.019  Sum_probs=62.5

Q ss_pred             EEEEcCCCCchhhhchhhhcccccccc--------cccc---Cce---eEEEEEeCCCCcccc----------CCCcccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFV--------QTYH---PDV---FFIVYSDTNHTQRCL----------TPMPFCS  109 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~--------~~~~---~~~---~~i~i~Dt~g~~~~~----------~~~~~~~  109 (250)
                      .+|||++|+||||++.  -.+....+.        ...+   .+-   +.-.+.||+|.+...          |..++ .
T Consensus       128 y~viG~pgsGKTtal~--~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL-~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALL--NSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL-G  204 (1188)
T ss_pred             eEEecCCCCCcchHHh--cccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHH-H
Confidence            8999999999999994  233111111        1111   000   144567999976222          11111 1


Q ss_pred             ccccccccCCCcEEEEEEeCCCHH----hH-----HHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERK----TF-----KKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~----Sf-----~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ....+...+..+|+|+..|+.+--    ..     ..++.=+.++.+. -....|+.|+.||.|+-
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll  269 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLL  269 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccc
Confidence            223344444789999999986531    11     1233334555433 23578999999999984

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.13  E-value=0.00074  Score=52.96  Aligned_cols=20  Identities=5%  Similarity=-0.001  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|..|+|||||++ ++..
T Consensus         3 ~~l~G~~GsGKTtl~~-~l~~   22 (158)
T cd03112           3 TVLTGFLGAGKTTLLN-HILT   22 (158)
T ss_pred             EEEEECCCCCHHHHHH-HHHh
Confidence            6899999999999997 6554

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.13  E-value=0.0014  Score=53.31  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ..+-+++|.|.+-.. ..+.+....    +.   -+ +-=+|.+|.|...    ..-.+..++...+.|+-.++  +|.+
T Consensus       113 ~~~~~~LVlsa~~~~~~~~~~~~~~----~~---~~-~~~lIlTKlDet~----~~G~~l~~~~~~~~Pi~~it--~Gq~  178 (196)
T PF00448_consen  113 NPDEVHLVLSATMGQEDLEQALAFY----EA---FG-IDGLILTKLDETA----RLGALLSLAYESGLPISYIT--TGQR  178 (196)
T ss_dssp             SSSEEEEEEEGGGGGHHHHHHHHHH----HH---SS-TCEEEEESTTSSS----TTHHHHHHHHHHTSEEEEEE--SSSS
T ss_pred             CCccceEEEecccChHHHHHHHHHh----hc---cc-CceEEEEeecCCC----CcccceeHHHHhCCCeEEEE--CCCC
Confidence            467888888887643 333222221    11   11 2234579999643    23456677788888865553  4444


Q ss_pred             H
Q psy5810         198 T  198 (250)
Q Consensus       198 I  198 (250)
                      |
T Consensus       179 V  179 (196)
T PF00448_consen  179 V  179 (196)
T ss_dssp             T
T ss_pred             h
Confidence            4

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0022  Score=54.80  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccc--------c------c--cccccccCcee-----------EEEEEeCCCCc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--------V------E--NFVQTYHPDVF-----------FIVYSDTNHTQ   99 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--------~------~--~~~~~~~~~~~-----------~i~i~Dt~g~~   99 (250)
                      ...-+++|..||.-.-|||||.. .+...        .      +  .-....|.++.           ..--.|.+|.-
T Consensus         8 r~kphVNigtiGHvdHGKTTLta-Ait~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTA-AITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHH-HHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            34456789999999999999985 43321        0      0  00111222222           22234666543


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cC
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VT  172 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~  172 (250)
                           .|.++|+....   +.|+.|||.+.++   |++-+.+.     +.++   -.+| ++++.||+|+.+++.   +-
T Consensus        87 -----DYvKNMItgAa---qmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd~ellelV  150 (394)
T COG0050          87 -----DYVKNMITGAA---QMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDDEELLELV  150 (394)
T ss_pred             -----HHHHHHhhhHH---hcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccCcHHHHHHH
Confidence                 22333333222   5899999999998   45554432     2122   3565 777889999865433   23


Q ss_pred             HHHHHHHHHHhCC-----eEEEEecCCCC--------CHHHHHHHHHHHHHh
Q psy5810         173 HSDGKKLAYAWGV-----KFVETSVGLVY--------KTDELLVGIARQAGL  211 (250)
Q Consensus       173 ~~~~~~~~~~~~~-----~~~evSa~~~~--------~I~~lf~~l~~~i~~  211 (250)
                      ..+.+.+...+++     |++.-||+..-        .|.+|++.+...+..
T Consensus       151 emEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         151 EMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             HHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            4567777888875     46767766532        245555555554443

>KOG1547|consensus

Probab=97.09  E-value=0.0018  Score=53.72  Aligned_cols=151  Identities=15%  Similarity=0.077  Sum_probs=73.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc------cccccccccCcee---------------EEEEEeCCCCc-----cccCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF---------------FIVYSDTNHTQ-----RCLTP  104 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~---------------~i~i~Dt~g~~-----~~~~~  104 (250)
                      .+.|+++|.+|.|||||+|-.|...      ...-...+..+++               ++.+.||+|--     ..-|.
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            3569999999999999999333221      0011112222222               56789999831     11111


Q ss_pred             ---Ccccccccccc----------cc--CCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCcc--
Q psy5810         105 ---MPFCSQVENFV----------QT--YHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLE--  166 (250)
Q Consensus       105 ---~~~~~~~~~~~----------~~--~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~--  166 (250)
                         .|.+..++.|.          .+  ...+++++....+- .++.-+. +.++.+.+     -+.+|-|.-|.|--  
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence               12222222222          11  15678887776653 2333222 23333422     23456666899931  


Q ss_pred             CCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810         167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       167 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      ++|.--.+.+++-...+++.+|+--+-+...=+..++.-++
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR  240 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR  240 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence            11222223344445567777766544443333333333333

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.04  E-value=0.0026  Score=40.77  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=28.9

Q ss_pred             CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810         119 HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus       119 ~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                      =++++++++|++...  |.++-...++++....  .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            368999999998864  5666666777776653  5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK13796 GTPase YqeH; Provisional

Probab=97.04  E-value=0.00052  Score=61.26  Aligned_cols=21  Identities=19%  Similarity=0.021  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++++|.+||||||||| ++..
T Consensus       162 ~v~vvG~~NvGKSTLiN-~L~~  182 (365)
T PRK13796        162 DVYVVGVTNVGKSTLIN-RIIK  182 (365)
T ss_pred             eEEEEcCCCCcHHHHHH-HHHh
Confidence            59999999999999999 7764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.00  E-value=0.012  Score=48.87  Aligned_cols=57  Identities=28%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLERRRQVTHSDGKKLAYAWGVK  186 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  186 (250)
                      ++|.+|.|.|.+- .|+...++. .++...   -. .++.+|.||.|..      .......+.+.+.+
T Consensus       155 ~vD~vivVvDpS~-~sl~taeri-~~L~~e---lg~k~i~~V~NKv~e~------e~~~~~~~~~~~~~  212 (255)
T COG3640         155 GVDLVIVVVDPSY-KSLRTAERI-KELAEE---LGIKRIFVVLNKVDEE------EELLRELAEELGLE  212 (255)
T ss_pred             CCCEEEEEeCCcH-HHHHHHHHH-HHHHHH---hCCceEEEEEeeccch------hHHHHhhhhccCCe
Confidence            7999999999874 344443332 223222   24 6899999999953      23344555555553

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.99  E-value=0.00044  Score=59.36  Aligned_cols=21  Identities=5%  Similarity=0.143  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .+++|.+|||||||+| ++..+
T Consensus       167 svl~GqSGVGKSSLiN-~L~p~  187 (301)
T COG1162         167 TVLLGQSGVGKSTLIN-ALLPE  187 (301)
T ss_pred             EEEECCCCCcHHHHHH-hhCch
Confidence            8999999999999999 77764

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.98  E-value=0.0065  Score=54.24  Aligned_cols=75  Identities=8%  Similarity=-0.013  Sum_probs=38.2

Q ss_pred             CCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         119 HPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       119 ~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      .+.-.++|.+.+. .+..+++-.-+.......... ..+-=+|.||.|...    ..-.+..++...++|+..++  +|.
T Consensus       245 ~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~yvt--~Gq  318 (374)
T PRK14722        245 TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS----NLGGVLDTVIRYKLPVHYVS--TGQ  318 (374)
T ss_pred             CCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC----CccHHHHHHHHHCcCeEEEe--cCC
Confidence            3456688888876 344444322222221100000 012345669999643    23446667777888865553  444


Q ss_pred             CHH
Q psy5810         197 KTD  199 (250)
Q Consensus       197 ~I~  199 (250)
                      +|.
T Consensus       319 ~VP  321 (374)
T PRK14722        319 KVP  321 (374)
T ss_pred             CCC
Confidence            443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.97  E-value=0.0083  Score=53.09  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..++-|.+.|.-+.|||||+- .+..
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG-~Lvt  139 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVG-VLVT  139 (527)
T ss_pred             CceEEEEEeccccCCcceEEE-EEEe
Confidence            356779999999999999997 5544

>KOG2655|consensus

Probab=96.96  E-value=0.0086  Score=52.84  Aligned_cols=22  Identities=5%  Similarity=0.129  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.++++|++|.|||||+| .+..
T Consensus        22 ftlmvvG~sGlGKsTfiN-sLf~   43 (366)
T KOG2655|consen   22 FTLMVVGESGLGKSTFIN-SLFL   43 (366)
T ss_pred             eEEEEecCCCccHHHHHH-HHHh
Confidence            569999999999999999 5544

>PRK00098 GTPase RsgA; Reviewed

Probab=96.95  E-value=0.00065  Score=58.95  Aligned_cols=21  Identities=5%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ++++|.+|||||||+| .+.+.
T Consensus       167 ~~~~G~sgvGKStlin-~l~~~  187 (298)
T PRK00098        167 TVLAGQSGVGKSTLLN-ALAPD  187 (298)
T ss_pred             EEEECCCCCCHHHHHH-HHhCC
Confidence            9999999999999998 77763

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.94  E-value=0.0043  Score=56.60  Aligned_cols=90  Identities=11%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCC-cEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~  167 (250)
                      ++.+.||+|........  ........++..+|.+++|.|.+...   +..+....+.     ... ..-+|.||.|...
T Consensus       177 DvVIIDTAGr~~~d~~l--m~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~-----~~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDL--IEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFH-----EAVGIGGIIITKLDGTA  246 (437)
T ss_pred             CEEEEECCCcccchHHH--HHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHH-----hcCCCCEEEEecccCCC
Confidence            56788999864211000  00001111112579999999987642   1212222221     112 2356679999643


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                      .    .-.+...+...+.|+..++.
T Consensus       247 ~----~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 K----GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             c----ccHHHHHHHHHCcCEEEEec
Confidence            1    12355566677888655543

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.92  E-value=0.0036  Score=56.69  Aligned_cols=65  Identities=8%  Similarity=-0.009  Sum_probs=37.7

Q ss_pred             CcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+-.+||.|.+- .....   +++....     .--+-=+|.||.|...    ..-.+..++...++|+..+  .+|.+|
T Consensus       300 ~~~~~LVl~at~~~~~~~---~~~~~f~-----~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~yv--t~Gq~V  365 (420)
T PRK14721        300 QVKHLLLLNATSSGDTLD---EVISAYQ-----GHGIHGCIITKVDEAA----SLGIALDAVIRRKLVLHYV--TNGQKV  365 (420)
T ss_pred             CceEEEEEcCCCCHHHHH---HHHHHhc-----CCCCCEEEEEeeeCCC----CccHHHHHHHHhCCCEEEE--ECCCCc
Confidence            456778888874 44333   3333331     1123345679999643    2344666778888886555  356666

>KOG1487|consensus

Probab=96.91  E-value=0.0093  Score=50.15  Aligned_cols=79  Identities=9%  Similarity=-0.078  Sum_probs=45.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCcccc--CCCccccccccccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~~  118 (250)
                      .++-++|-|.+||||++. .+.+.........+.+.           .++++.|.+|.-+.-  ....-+..+.   .+|
T Consensus        60 a~vg~vgFPSvGksTl~~-~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---var  135 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLS-KLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---VAR  135 (358)
T ss_pred             eeeeEEecCccchhhhhh-hhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE---Eee
Confidence            359999999999999997 77764222111111111           178888988853111  1111111111   122


Q ss_pred             CCcEEEEEEeCCCHHh
Q psy5810         119 HPDVFVIVYSVIERKT  134 (250)
Q Consensus       119 ~ad~iilV~D~~~~~S  134 (250)
                      .++.+++|.|+-.|-+
T Consensus       136 tcnli~~vld~~kp~~  151 (358)
T KOG1487|consen  136 TCNLIFIVLDVLKPLS  151 (358)
T ss_pred             cccEEEEEeeccCccc
Confidence            6888999988876644

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.89  E-value=0.0055  Score=56.85  Aligned_cols=64  Identities=9%  Similarity=0.078  Sum_probs=38.1

Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ..++|.+.+-  +..++...++.+..     ..+.-+|.||.|...    ..-.+.......++++..++  +|.+|
T Consensus       460 a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~----~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        460 TSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG----RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             CcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc----chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence            4566666653  34444444444422     235678899999632    33556667778888866553  45565

>TIGR00959 ffh signal recognition particle protein

Probab=96.88  E-value=0.0061  Score=55.45  Aligned_cols=91  Identities=16%  Similarity=0.121  Sum_probs=47.3

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|....-  .........+......+.+++|.|.+..+   +...+...+...   -+ ..=+|.||.|....
T Consensus       184 DvVIIDTaGr~~~d--~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~---v~-i~giIlTKlD~~~~  254 (428)
T TIGR00959       184 DVVIVDTAGRLQID--EELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNER---LG-LTGVVLTKLDGDAR  254 (428)
T ss_pred             CEEEEeCCCccccC--HHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhh---CC-CCEEEEeCccCccc
Confidence            56788999953110  00000011111111578999999987542   333333333221   12 23556799995331


Q ss_pred             CccCHHHHHHHHHHhCCeEEEEec
Q psy5810         169 RQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                          .-.+...+...++|+..++.
T Consensus       255 ----~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 ----GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----ccHHHHHHHHHCcCEEEEeC
Confidence                22366677778888665544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.84  E-value=0.00081  Score=58.03  Aligned_cols=22  Identities=5%  Similarity=0.081  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .++++|.+|||||||+| .+.+.
T Consensus       163 ~~~~~G~sg~GKSTlin-~l~~~  184 (287)
T cd01854         163 TSVLVGQSGVGKSTLIN-ALLPD  184 (287)
T ss_pred             eEEEECCCCCCHHHHHH-HHhch
Confidence            49999999999999998 77763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.82  E-value=0.0057  Score=55.68  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=35.1

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                      .++.+++|.|.+..+   ++.+....+.+.   -++ .-+|.||.|.....    -.+...+...+.|+..++.
T Consensus       213 ~p~evllVlda~~gq---~av~~a~~F~~~---~~i-~giIlTKlD~~~rg----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        213 NPDEILLVVDAMTGQ---DAVNTAKAFNEA---LGL-TGVILTKLDGDARG----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             CCCeEEEEEecccHH---HHHHHHHHHHhh---CCC-CEEEEeCccCcccc----cHHHHHHHHHCcCEEEEeC
Confidence            468889999986532   222333333211   122 34556999964321    2256667777888655544

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.75  E-value=0.013  Score=52.47  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  167 (250)
                      ++.+.||+|.-..-  ..+...++++.......-..||++.+-..  +++.+.++.+      ...| --++.||.|.. 
T Consensus       283 d~ILVDTaGrs~~D--~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f------~~~~i~~~I~TKlDET-  351 (407)
T COG1419         283 DVILVDTAGRSQYD--KEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF------SLFPIDGLIFTKLDET-  351 (407)
T ss_pred             CEEEEeCCCCCccC--HHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh------ccCCcceeEEEccccc-
Confidence            67789999953111  11111122222221234556677776532  3455555544      2233 24556999963 


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                         -+.-.......+.+.|+..+  .+|.+|
T Consensus       352 ---~s~G~~~s~~~e~~~PV~Yv--T~GQ~V  377 (407)
T COG1419         352 ---TSLGNLFSLMYETRLPVSYV--TNGQRV  377 (407)
T ss_pred             ---CchhHHHHHHHHhCCCeEEE--eCCCCC
Confidence               24455666667777775444  356665

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.72  E-value=0.0096  Score=53.44  Aligned_cols=97  Identities=12%  Similarity=0.042  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|.-..... ... ...........+.++||.|.+-..  +++..++..+..    .+ +-=+|.||.|... 
T Consensus       322 DvVLIDTaGRs~kd~~-lm~-EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~-idglI~TKLDET~-  391 (436)
T PRK11889        322 DYILIDTAGKNYRASE-TVE-EMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IH-IDGIVFTKFDETA-  391 (436)
T ss_pred             CEEEEeCccccCcCHH-HHH-HHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CC-CCEEEEEcccCCC-
Confidence            4668899986421100 000 011111111467788998875321  223333343321    11 2345679999643 


Q ss_pred             CccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                         ..-.+..++...++|+..++  +|.+|.+
T Consensus       392 ---k~G~iLni~~~~~lPIsyit--~GQ~VPe  418 (436)
T PRK11889        392 ---SSGELLKIPAVSSAPIVLMT--DGQDVKK  418 (436)
T ss_pred             ---CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence               22345667778888865553  4555533

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.71  E-value=0.007  Score=42.21  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccC---CCccccccccccccCCCcEEEEEEeCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLT---PMPFCSQVENFVQTYHPDVFVIVYSVI  130 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~---~~~~~~~~~~~~~~~~ad~iilV~D~~  130 (250)
                      +++.|..|+|||++.. .+...-... ..-...+.++.+.|+++......   .....          .+|.++++.+..
T Consensus         2 ~~~~g~~G~Gktt~~~-~l~~~l~~~-g~~v~~~~d~iivD~~~~~~~~~~~~~~~~~----------~~~~vi~v~~~~   69 (99)
T cd01983           2 IVVTGKGGVGKTTLAA-NLAAALAKR-GKRVLLIDDYVLIDTPPGLGLLVLLCLLALL----------AADLVIIVTTPE   69 (99)
T ss_pred             EEEECCCCCCHHHHHH-HHHHHHHHC-CCeEEEECCEEEEeCCCCccchhhhhhhhhh----------hCCEEEEecCCc
Confidence            6788999999999985 554421110 00001111677889998763332   22223          689999998775


Q ss_pred             CHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810         131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus       131 ~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .. +........+...........+..++.|
T Consensus        70 ~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          70 AL-AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            43 3333333322222222233445555543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0082  Score=55.55  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=53.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc-c-ccccccccCce------eEEEEEeCCCCccccCCCccccccccccccCCCcEE
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ-V-ENFVQTYHPDV------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVF  123 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~-~-~~~~~~~~~~~------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~i  123 (250)
                      +-++|+|++|+||||||. .++.. + .......||-.      ..+.+...+.        .+..+++...   -||.+
T Consensus        70 fIvavvGPpGtGKsTLir-SlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--------Dl~~miDvaK---IaDLV  137 (1077)
T COG5192          70 FIVAVVGPPGTGKSTLIR-SLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--------DLHQMIDVAK---IADLV  137 (1077)
T ss_pred             eEEEeecCCCCChhHHHH-HHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--------HHHHHHhHHH---hhhee
Confidence            447899999999999995 55542 1 11111122211      1333333332        2222222222   58999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810         124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER  167 (250)
Q Consensus       124 ilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  167 (250)
                      +|.+|..-.-..+. .+++. |.+.+   ..| ++-|++..|+-.
T Consensus       138 lLlIdgnfGfEMET-mEFLn-il~~H---GmPrvlgV~ThlDlfk  177 (1077)
T COG5192         138 LLLIDGNFGFEMET-MEFLN-ILISH---GMPRVLGVVTHLDLFK  177 (1077)
T ss_pred             EEEeccccCceehH-HHHHH-HHhhc---CCCceEEEEeeccccc
Confidence            99999865422221 12222 44443   444 677889999843

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.54  E-value=0.043  Score=43.41  Aligned_cols=137  Identities=13%  Similarity=0.127  Sum_probs=91.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc---cccCCCccccccccccccCCCcEEEEEE
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ---RCLTPMPFCSQVENFVQTYHPDVFVIVY  127 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~---~~~~~~~~~~~~~~~~~~~~ad~iilV~  127 (250)
                      ...|+++|..+.++..|.. .+......         .++++. ++-..   ....+...           ..|.++|++
T Consensus        15 ~atiLLVg~e~~~~~~LA~-a~l~~~~~---------~~l~Vh-~a~sLPLp~e~~~lRp-----------rIDlIVFvi   72 (176)
T PF11111_consen   15 TATILLVGTEEALLQQLAE-AMLEEDKE---------FKLKVH-LAKSLPLPSENNNLRP-----------RIDLIVFVI   72 (176)
T ss_pred             eeEEEEecccHHHHHHHHH-HHHhhccc---------eeEEEE-EeccCCCcccccCCCc-----------eeEEEEEEE
Confidence            4559999999999999996 66652222         112221 11110   00001111           479999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810         128 SVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       128 D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      |.+...|++.++.=+..+......  -.+.++++-..-.+...+...++.+++..+++|++.+.-.+.++...+-+.|++
T Consensus        73 nl~sk~SL~~ve~SL~~vd~~ffl--GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~  150 (176)
T PF11111_consen   73 NLHSKYSLQSVEASLSHVDPSFFL--GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR  150 (176)
T ss_pred             ecCCcccHHHHHHHHhhCChhhhc--cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence            999999999888765555322211  235566666665566789999999999999999998888888777777777776


Q ss_pred             HHHh
Q psy5810         208 QAGL  211 (250)
Q Consensus       208 ~i~~  211 (250)
                      .+..
T Consensus       151 ~lqi  154 (176)
T PF11111_consen  151 MLQI  154 (176)
T ss_pred             HHHH
Confidence            5543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.53  E-value=0.0072  Score=46.87  Aligned_cols=16  Identities=6%  Similarity=0.005  Sum_probs=14.9

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      +.++|.+|+||||++.
T Consensus         2 i~~~G~~GsGKTt~~~   17 (148)
T cd03114           2 IGITGVPGAGKSTLID   17 (148)
T ss_pred             EEEECCCCCcHHHHHH
Confidence            7899999999999986

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.48  E-value=0.015  Score=45.95  Aligned_cols=16  Identities=0%  Similarity=-0.029  Sum_probs=14.6

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      ++++|.+|+|||++..
T Consensus         3 ~~~~G~~G~GKTt~~~   18 (173)
T cd03115           3 ILLVGLQGVGKTTTAA   18 (173)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            7899999999999974

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.47  E-value=0.0057  Score=45.80  Aligned_cols=20  Identities=5%  Similarity=0.187  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|++ .+..
T Consensus        22 v~i~G~~G~GKT~l~~-~i~~   41 (151)
T cd00009          22 LLLYGPPGTGKTTLAR-AIAN   41 (151)
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6665

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0466|consensus

Probab=96.46  E-value=0.0046  Score=53.06  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=44.0

Q ss_pred             CcEEEEeeCCCccCCCc--cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         154 KAVILVANKADLERRRQ--VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       154 ~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ..++++-||.|+..+.+  -..++...|.+..   +.|++++||.-.+||+.+.+++++.+...
T Consensus       180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            45889999999854322  1234455565533   57899999999999999999999987654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.38  E-value=0.021  Score=55.33  Aligned_cols=69  Identities=9%  Similarity=-0.033  Sum_probs=38.8

Q ss_pred             CCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ..+-.+||.|.+- .+.++++-.-+.....    .+ +-=+|.||.|...    ..-.+..+....++|+..++  +|++
T Consensus       293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~----~~-i~glIlTKLDEt~----~~G~iL~i~~~~~lPI~yit--~GQ~  361 (767)
T PRK14723        293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAG----ED-VDGCIITKLDEAT----HLGPALDTVIRHRLPVHYVS--TGQK  361 (767)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHhhccc----CC-CCEEEEeccCCCC----CccHHHHHHHHHCCCeEEEe--cCCC
Confidence            4567789999874 3445544322222100    01 2345679999643    22345667777888865553  4556


Q ss_pred             H
Q psy5810         198 T  198 (250)
Q Consensus       198 I  198 (250)
                      |
T Consensus       362 V  362 (767)
T PRK14723        362 V  362 (767)
T ss_pred             C
Confidence            5

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.37  E-value=0.019  Score=53.00  Aligned_cols=62  Identities=5%  Similarity=0.011  Sum_probs=34.9

Q ss_pred             EEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         123 FVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       123 iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .++|.|.+- ...+.+   ....+.    ... .--+|.||.|...    ..-.+..++...++++..+  .+|++|
T Consensus       368 ~~LVLdAt~~~~~l~~---i~~~f~----~~~-~~g~IlTKlDet~----~~G~~l~i~~~~~lPI~yv--t~GQ~V  430 (484)
T PRK06995        368 RLLLLNATSHGDTLNE---VVQAYR----GPG-LAGCILTKLDEAA----SLGGALDVVIRYKLPLHYV--SNGQRV  430 (484)
T ss_pred             eEEEEeCCCcHHHHHH---HHHHhc----cCC-CCEEEEeCCCCcc----cchHHHHHHHHHCCCeEEE--ecCCCC
Confidence            677888764 333333   222221    112 3345679999643    2345667778888886555  356666

>KOG1424|consensus

Probab=96.36  E-value=0.0029  Score=57.69  Aligned_cols=47  Identities=9%  Similarity=-0.075  Sum_probs=33.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHT   98 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~   98 (250)
                      .+.|.+||-|||||||+|| .+.+.. .....|.|.|-.        .+.+.|.+|-
T Consensus       314 ~vtVG~VGYPNVGKSSTIN-aLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTIN-ALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHH-HHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCc
Confidence            3669999999999999999 888852 234455555433        3445777774

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.34  E-value=0.021  Score=50.98  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=36.5

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ..+.+++|.+.+.  ...++...+...    . .-.+--+|.||.|...    ..-.+...+...+.|+..++  +|.+|
T Consensus       315 ~p~~~~LVLsag~--~~~d~~~i~~~f----~-~l~i~glI~TKLDET~----~~G~~Lsv~~~tglPIsylt--~GQ~V  381 (407)
T PRK12726        315 HPDLTCFTFSSGM--KSADVMTILPKL----A-EIPIDGFIITKMDETT----RIGDLYTVMQETNLPVLYMT--DGQNI  381 (407)
T ss_pred             CCceEEEECCCcc--cHHHHHHHHHhc----C-cCCCCEEEEEcccCCC----CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence            4567777777632  222233332222    1 1123456679999643    23346667778888865554  34554


Q ss_pred             H
Q psy5810         199 D  199 (250)
Q Consensus       199 ~  199 (250)
                      .
T Consensus       382 p  382 (407)
T PRK12726        382 T  382 (407)
T ss_pred             C
Confidence            4

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.32  E-value=0.016  Score=44.24  Aligned_cols=94  Identities=12%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             EEEcCCCCchhhhchhhhccc---c---------ccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcE
Q psy5810          55 IVHSDTNHTQRCLTSMPFCSQ---V---------ENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        55 ~iiG~~~vGKSsLi~~~~~~~---~---------~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      +.-|..|+|||++.. .+...   .         +...+.+.   .++.++|+++.........+.          .+|.
T Consensus         4 ~~~~kgg~gkt~~~~-~~a~~~~~~~~~~~~vd~D~~~~~~~---yd~VIiD~p~~~~~~~~~~l~----------~aD~   69 (139)
T cd02038           4 VTSGKGGVGKTNISA-NLALALAKLGKRVLLLDADLGLANLD---YDYIIIDTGAGISDNVLDFFL----------AADE   69 (139)
T ss_pred             EEcCCCCCcHHHHHH-HHHHHHHHCCCcEEEEECCCCCCCCC---CCEEEEECCCCCCHHHHHHHH----------hCCe
Confidence            355788999999874 32221   0         00111111   367788998754322222333          6899


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      ++++.+.+ ..++..+...++.+.+.  ....++.+|.|+++-
T Consensus        70 vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~  109 (139)
T cd02038          70 VIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAES  109 (139)
T ss_pred             EEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence            99999885 45555555555555332  234567889999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.30  E-value=0.0021  Score=47.55  Aligned_cols=21  Identities=10%  Similarity=0.233  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.+ .+..
T Consensus         1 vI~I~G~~gsGKST~a~-~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAK-ELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             CEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6665

...

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=96.29  E-value=0.08  Score=47.77  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CcEEEEEEeC--CC--HHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSV--IE--RKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~--~~--~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                      .-|+++--|-  ++  ++++... .+.+.++.+    -+.|++++.|-.+-..  .-+.+.+.++..+++.+.+.+++..
T Consensus       146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence            4556665553  22  4555554 346777755    4789999999887432  2344556778888999998887765


Q ss_pred             C--CCHHHHHHHHH
Q psy5810         195 V--YKTDELLVGIA  206 (250)
Q Consensus       195 ~--~~I~~lf~~l~  206 (250)
                      -  ..|..++..++
T Consensus       220 l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  220 LREEDITRILEEVL  233 (492)
T ss_pred             cCHHHHHHHHHHHH
Confidence            4  34555555554

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0085|consensus

Probab=96.25  E-value=0.007  Score=50.05  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=42.2

Q ss_pred             CCCcEEEEeeCCCccCCC----------------ccCHHHHHHHHHHh----C-----Ce-EEEEecCCCCCHHHHHHHH
Q psy5810         152 GEKAVILVANKADLERRR----------------QVTHSDGKKLAYAW----G-----VK-FVETSVGLVYKTDELLVGI  205 (250)
Q Consensus       152 ~~~piilv~nK~Dl~~~~----------------~v~~~~~~~~~~~~----~-----~~-~~evSa~~~~~I~~lf~~l  205 (250)
                      .+.++|+..||.|+-+++                +-+.+.+++|..++    +     +. -..++|.+.+||.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            357899999999983222                23345556665443    2     11 2468899999999999998


Q ss_pred             HHHHHhhh
Q psy5810         206 ARQAGLNK  213 (250)
Q Consensus       206 ~~~i~~~~  213 (250)
                      -..+++..
T Consensus       345 kDtiLq~~  352 (359)
T KOG0085|consen  345 KDTILQLN  352 (359)
T ss_pred             HHHHHHhh
Confidence            88777643

>KOG0463|consensus

Probab=96.24  E-value=0.036  Score=49.04  Aligned_cols=23  Identities=9%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             ccccEEEEEEEcCCCCchhhhch
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTS   69 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~   69 (250)
                      ..+-.++|+++|+-.+|||||+-
T Consensus       129 ~DF~E~RVAVVGNVDAGKSTLLG  151 (641)
T KOG0463|consen  129 KDFIEARVAVVGNVDAGKSTLLG  151 (641)
T ss_pred             ccceeEEEEEEecccCCcceeEe
Confidence            35566789999999999999995

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.20  E-value=0.036  Score=50.49  Aligned_cols=64  Identities=14%  Similarity=0.011  Sum_probs=35.8

Q ss_pred             cEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         121 DVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       121 d~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .-.++|.+.+-. ..+..   .+..+..    .+ +--+|.||.|...    ..-.+..++...++|+..++  +|.+|
T Consensus       332 ~~~~LVl~a~~~~~~l~~---~~~~f~~----~~-~~~vI~TKlDet~----~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        332 IDVYLVLSATTKYEDLKD---IYKHFSR----LP-LDGLIFTKLDETS----SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             CeEEEEEECCCCHHHHHH---HHHHhCC----CC-CCEEEEecccccc----cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence            456677777543 33333   3333311    11 2256789999633    23356777888898865553  45554

>KOG2485|consensus

Probab=96.20  E-value=0.0047  Score=53.09  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      ..++|+|-||||||||+| .+.
T Consensus       144 ~~vmVvGvPNVGKSsLIN-a~r  164 (335)
T KOG2485|consen  144 YNVMVVGVPNVGKSSLIN-ALR  164 (335)
T ss_pred             eeEEEEcCCCCChHHHHH-HHH
Confidence            339999999999999999 543

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.13  E-value=0.0071  Score=54.62  Aligned_cols=24  Identities=4%  Similarity=0.040  Sum_probs=20.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ...+|+|+|.+|+|||||++ .+..
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~-~La~  241 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVN-KLAN  241 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHH-HHHH
Confidence            44569999999999999997 6665

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.11  E-value=0.0033  Score=52.46  Aligned_cols=20  Identities=5%  Similarity=0.046  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |.|+|++|||||||++ .+.+
T Consensus        32 vsilGpSGcGKSTLLr-iiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLR-LIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999995 5444

>PRK08118 topology modulation protein; Reviewed

Probab=96.11  E-value=0.003  Score=50.05  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ||+|+|.+|||||||.. .+..
T Consensus         3 rI~I~G~~GsGKSTlak-~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLAR-QLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999995 6655

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.07  E-value=0.0036  Score=51.87  Aligned_cols=16  Identities=6%  Similarity=0.108  Sum_probs=15.7

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      ++|+|++|||||||+|
T Consensus        34 vaI~GpSGSGKSTLLn   49 (226)
T COG1136          34 VAIVGPSGSGKSTLLN   49 (226)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            9999999999999997

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.05  E-value=0.04  Score=49.55  Aligned_cols=95  Identities=12%  Similarity=0.041  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCc-EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD-VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad-~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ++.+.||+|.-... ..... ....+......+ -.+||.|.+-..  +.+...+....     .-.+-=+|.||.|...
T Consensus       256 DlVLIDTaGr~~~~-~~~l~-el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~-----~~~~~~~I~TKlDet~  326 (388)
T PRK12723        256 DLVLVDTIGKSPKD-FMKLA-EMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFS-----PFSYKTVIFTKLDETT  326 (388)
T ss_pred             CEEEEcCCCCCccC-HHHHH-HHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhc-----CCCCCEEEEEeccCCC
Confidence            56678999864211 00111 111111111223 578888887652  23333333331     1113455679999643


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                          ..-.+..++...+.|+..+  .+|.+|
T Consensus       327 ----~~G~~l~~~~~~~~Pi~yi--t~Gq~v  351 (388)
T PRK12723        327 ----CVGNLISLIYEMRKEVSYV--TDGQIV  351 (388)
T ss_pred             ----cchHHHHHHHHHCCCEEEE--eCCCCC
Confidence                2334566777788886555  356666

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.02  E-value=0.0036  Score=47.64  Aligned_cols=20  Identities=10%  Similarity=0.195  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+|||||||+. .+..
T Consensus         2 ii~~G~pgsGKSt~a~-~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAK-RLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999996 6664

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.02  E-value=0.003  Score=50.56  Aligned_cols=22  Identities=5%  Similarity=0.141  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.||+||||+.. ++..
T Consensus         1 ~riiilG~pGaGK~T~A~-~La~   22 (178)
T COG0563           1 MRILILGPPGAGKSTLAK-KLAK   22 (178)
T ss_pred             CeEEEECCCCCCHHHHHH-HHHH
Confidence            369999999999999996 6666

>PRK07261 topology modulation protein; Provisional

Probab=95.99  E-value=0.0039  Score=49.52  Aligned_cols=21  Identities=5%  Similarity=0.048  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+|+|||||.. .+..
T Consensus         2 ri~i~G~~GsGKSTla~-~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLAR-KLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            69999999999999996 6654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=95.96  E-value=0.028  Score=40.31  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             EEEEc-CCCCchhhhchhhhccc-----cccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEE
Q psy5810          54 FIVHS-DTNHTQRCLTSMPFCSQ-----VENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVY  127 (250)
Q Consensus        54 i~iiG-~~~vGKSsLi~~~~~~~-----~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~  127 (250)
                      |++.| ..|+||||+.. .+...     .....-..++. .++.+.|+++.........+.          .+|.++++.
T Consensus         2 i~~~~~kgG~Gkst~~~-~la~~~~~~~~~vl~~d~d~~-~d~viiD~p~~~~~~~~~~l~----------~ad~viv~~   69 (104)
T cd02042           2 IAVANQKGGVGKTTTAV-NLAAALARRGKRVLLIDLDPQ-YDYIIIDTPPSLGLLTRNALA----------AADLVLIPV   69 (104)
T ss_pred             EEEEeCCCCcCHHHHHH-HHHHHHHhCCCcEEEEeCCCC-CCEEEEeCcCCCCHHHHHHHH----------HCCEEEEec
Confidence            56667 66999999874 43321     11111122222 356778998865332223333          589999998


Q ss_pred             eCCCHHhHHHHHHHHH
Q psy5810         128 SVIERKTFKKAEDMLK  143 (250)
Q Consensus       128 D~~~~~Sf~~~~~~~~  143 (250)
                      +.+ ..++..+..+++
T Consensus        70 ~~~-~~s~~~~~~~~~   84 (104)
T cd02042          70 QPS-PLDLDGLEKLLE   84 (104)
T ss_pred             cCC-HHHHHHHHHHHH
Confidence            774 556666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=95.92  E-value=0.043  Score=43.52  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=55.0

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||++.........+.          .+|.++++...+ ..+...+..+++.+.+    .+.|+.+|.||.|....
T Consensus        94 d~viiDtpp~~~~~~~~~l~----------~aD~vliv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~  158 (179)
T cd03110          94 ELIIIDGPPGIGCPVIASLT----------GADAALLVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLNDE  158 (179)
T ss_pred             CEEEEECcCCCcHHHHHHHH----------cCCEEEEEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc
Confidence            56788999664221112223          699999999887 4466667777666643    24678899999996431


Q ss_pred             CccCHHHHHHHHHHhCCeEE
Q psy5810         169 RQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~  188 (250)
                         ...+..+++++++++++
T Consensus       159 ---~~~~~~~~~~~~~~~vl  175 (179)
T cd03110         159 ---IAEEIEDYCEEEGIPIL  175 (179)
T ss_pred             ---hHHHHHHHHHHcCCCeE
Confidence               34567778888888765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.91  E-value=0.079  Score=41.65  Aligned_cols=84  Identities=13%  Similarity=0.049  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.++|+++.........+.          .+|.+|++.+.+. .++..+..+++.+...   ......+|.|+.|... 
T Consensus        64 d~viiD~p~~~~~~~~~~l~----------~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~-  128 (179)
T cd02036          64 DYILIDSPAGIERGFITAIA----------PADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM-  128 (179)
T ss_pred             CEEEEECCCCCcHHHHHHHH----------hCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc-
Confidence            57788988754222222223          6899999987754 4555666666655432   2335778899998532 


Q ss_pred             CccCHHHHHHHHHHhCCeEE
Q psy5810         169 RQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~  188 (250)
                       ....+....+.+.++.+++
T Consensus       129 -~~~~~~~~~~~~~~~~~v~  147 (179)
T cd02036         129 -VEGGDMVEDIEEILGVPLL  147 (179)
T ss_pred             -cchhhHHHHHHHHhCCCEE
Confidence             1222223445555676643

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.87  E-value=0.0037  Score=49.00  Aligned_cols=21  Identities=5%  Similarity=0.194  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ||+|+|.+++|||||++ .+..
T Consensus         1 rI~i~G~~stGKTTL~~-~L~~   21 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIE-ALAA   21 (163)
T ss_dssp             -EEEE--TTSHHHHHHH-HHHH
T ss_pred             CEEEECCCCCCHHHHHH-HHHH
Confidence            69999999999999997 6765

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.81  E-value=0.03  Score=50.66  Aligned_cols=22  Identities=5%  Similarity=0.019  Sum_probs=18.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..++++|++||||||++. ++..
T Consensus       224 ~vi~lvGptGvGKTTtaa-KLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIA-KLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            348899999999999996 6553

>KOG1533|consensus

Probab=95.80  E-value=0.014  Score=48.48  Aligned_cols=16  Identities=6%  Similarity=0.040  Sum_probs=14.4

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      -+|||+||+||||..+
T Consensus         5 qvVIGPPgSGKsTYc~   20 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCN   20 (290)
T ss_pred             eEEEcCCCCCccchhh
Confidence            6899999999999875

>KOG2484|consensus

Probab=95.75  E-value=0.0048  Score=54.66  Aligned_cols=48  Identities=8%  Similarity=-0.095  Sum_probs=32.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee--------EEEEEeCCCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF--------FIVYSDTNHT   98 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~--------~i~i~Dt~g~   98 (250)
                      ..+.+.|||-|||||||+|| .+... ........|.|..        .+.+.|.+|.
T Consensus       251 ~sIrvGViG~PNVGKSSvIN-sL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVIN-SLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHH-HHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence            55779999999999999999 66552 1122333333332        6778888885

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.72  E-value=0.0067  Score=45.83  Aligned_cols=20  Identities=5%  Similarity=0.111  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|..|+|||||++ .+.+
T Consensus        14 ~~i~G~nGsGKStLl~-~l~g   33 (137)
T PF00005_consen   14 VAIVGPNGSGKSTLLK-ALAG   33 (137)
T ss_dssp             EEEEESTTSSHHHHHH-HHTT
T ss_pred             EEEEccCCCcccccee-eecc
Confidence            9999999999999996 6666

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.59  E-value=0.033  Score=40.49  Aligned_cols=93  Identities=15%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             EcCCCCchhhhchhhhcccc--c----c-cc-ccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEe
Q psy5810          57 HSDTNHTQRCLTSMPFCSQV--E----N-FV-QTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYS  128 (250)
Q Consensus        57 iG~~~vGKSsLi~~~~~~~~--~----~-~~-~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D  128 (250)
                      =+..|+|||++.. .+...-  .    . .. ..+... .++.+.|+++.........+.          .+|.++++.+
T Consensus         6 ~~kgg~gkt~~~~-~la~~~~~~~~~~~~l~d~d~~~~-~D~IIiDtpp~~~~~~~~~l~----------~aD~vlvvv~   73 (106)
T cd03111           6 GAKGGVGATTLAA-NLAVALAKEAGRRVLLVDLDLQFG-DDYVVVDLGRSLDEVSLAALD----------QADRVFLVTQ   73 (106)
T ss_pred             CCCCCCcHHHHHH-HHHHHHHhcCCCcEEEEECCCCCC-CCEEEEeCCCCcCHHHHHHHH----------HcCeEEEEec
Confidence            3567999999774 433320  0    0 00 000000 167788998865332222333          6899999886


Q ss_pred             CCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810         129 VIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK  162 (250)
Q Consensus       129 ~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK  162 (250)
                      .+ ..+...+..+++.+.+........+.+|.|+
T Consensus        74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            64 5566667777766654322214456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=95.56  E-value=0.1  Score=45.73  Aligned_cols=66  Identities=18%  Similarity=0.091  Sum_probs=38.6

Q ss_pred             CCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEec
Q psy5810         119 HPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSV  192 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa  192 (250)
                      .-|++|-|.|..+-..-.. +.+...+-..      ..=++|.||+|+.....  .+..+...++.+  .++++++.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            4689999999887543222 3322222211      23367789999865332  344455555554  56888877

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.54  E-value=0.0071  Score=40.38  Aligned_cols=20  Identities=0%  Similarity=0.160  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|.+|+|||++.+ .+..
T Consensus         2 i~i~G~~gsGKst~~~-~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAK-KLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999996 6665

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1161 Predicted GTPases [General function prediction only]

Probab=95.54  E-value=0.032  Score=49.01  Aligned_cols=119  Identities=22%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+|+++-|.|+-+|.+...-  -+.++.     .+.|.++|.||+|+... .+.......+....+...+.+++..+.+.
T Consensus        34 ~~d~vvevvDar~P~~s~~~--~l~~~v-----~~k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~~~~~v~~~~~~~~  105 (322)
T COG1161          34 SVDVVVEVVDARDPLGTRNP--ELERIV-----KEKPKLLVLNKADLAPK-EVTKKWKKYFKKEEGIKPIFVSAKSRQGG  105 (322)
T ss_pred             cCCEEEEEEeccccccccCc--cHHHHH-----ccCCcEEEEehhhcCCH-HHHHHHHHHHHhcCCCccEEEEeecccCc
Confidence            68999999999998765432  122221     34455999999998652 33444455555555666788888888776


Q ss_pred             HHHHHHHHHHH----HhhhhhhhHH--------HHHhhhhhhhhhhhhccCCcCcCccc
Q psy5810         199 DELLVGIARQA----GLNKKRNKLL--------AKKQKKMASYINNIKQFKWFSKVSCE  245 (250)
Q Consensus       199 ~~lf~~l~~~i----~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (250)
                      ..+...+....    ..........        .-..-..++.++++.+++.-+...++
T Consensus       106 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P  164 (322)
T COG1161         106 KKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP  164 (322)
T ss_pred             cchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC
Confidence            66554333221    1111111000        00014889999999999884444443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.54  E-value=0.0083  Score=39.26  Aligned_cols=16  Identities=6%  Similarity=0.142  Sum_probs=15.3

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      .+|.|+.|+|||||+.
T Consensus        26 tli~G~nGsGKSTllD   41 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLD   41 (62)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            8999999999999996

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.53  E-value=0.014  Score=44.31  Aligned_cols=40  Identities=8%  Similarity=0.066  Sum_probs=25.7

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEe
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSD   94 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~D   94 (250)
                      |++.|+.|+|||||+. .++..-+.-.....||+.-+..++
T Consensus        25 i~l~G~lGaGKTtl~~-~l~~~lg~~~~v~SPTf~lv~~Y~   64 (133)
T TIGR00150        25 VLLKGDLGAGKTTLVQ-GLLQGLGIQGNVTSPTFTLVNEYN   64 (133)
T ss_pred             EEEEcCCCCCHHHHHH-HHHHHcCCCCcccCCCeeeeeecc
Confidence            8999999999999995 676642221223345554444444

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG1534|consensus

Probab=95.48  E-value=0.043  Score=44.89  Aligned_cols=16  Identities=13%  Similarity=0.090  Sum_probs=15.0

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      .+|+|+.|+||||+..
T Consensus         6 ~lV~GpAgSGKSTyC~   21 (273)
T KOG1534|consen    6 QLVMGPAGSGKSTYCS   21 (273)
T ss_pred             EEEEccCCCCcchHHH
Confidence            7899999999999986

>PRK06217 hypothetical protein; Validated

Probab=95.46  E-value=0.0089  Score=47.87  Aligned_cols=22  Identities=5%  Similarity=0.108  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .+|+|+|.+|+|||||.. ++..
T Consensus         2 ~~I~i~G~~GsGKSTla~-~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGA-ALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            369999999999999995 6665

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.44  E-value=0.0086  Score=47.96  Aligned_cols=20  Identities=5%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||+| ...+
T Consensus        28 vAi~GpSGaGKSTLLn-LIAG   47 (231)
T COG3840          28 VAILGPSGAGKSTLLN-LIAG   47 (231)
T ss_pred             EEEECCCCccHHHHHH-HHHh
Confidence            9999999999999998 5554

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.44  E-value=0.0081  Score=48.64  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|++|||||||+| ...+
T Consensus        34 vv~lGpSGcGKTTLLn-l~AG   53 (259)
T COG4525          34 VVVLGPSGCGKTTLLN-LIAG   53 (259)
T ss_pred             EEEEcCCCccHHHHHH-HHhc
Confidence            9999999999999998 5444

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.42  E-value=0.0077  Score=44.84  Aligned_cols=20  Identities=10%  Similarity=0.311  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+++. .+..
T Consensus         1 ill~G~~G~GKT~l~~-~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLAR-ALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHH-HHHH
T ss_pred             CEEECcCCCCeeHHHH-HHHh
Confidence            6899999999999996 6665

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.41  E-value=0.009  Score=49.59  Aligned_cols=15  Identities=7%  Similarity=0.078  Sum_probs=14.9

Q ss_pred             EEEEcCCCCchhhhc
Q psy5810          54 FIVHSDTNHTQRCLT   68 (250)
Q Consensus        54 i~iiG~~~vGKSsLi   68 (250)
                      |+|||++|+|||||+
T Consensus        33 VaiIG~SGaGKSTLL   47 (258)
T COG3638          33 VAIIGPSGAGKSTLL   47 (258)
T ss_pred             EEEECCCCCcHHHHH
Confidence            999999999999999

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.39  E-value=0.0088  Score=45.70  Aligned_cols=20  Identities=5%  Similarity=0.129  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|+|||||++ .+..
T Consensus         2 i~i~GpsGsGKstl~~-~L~~   21 (137)
T cd00071           2 IVLSGPSGVGKSTLLK-RLLE   21 (137)
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            7899999999999997 6665

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.37  E-value=0.0081  Score=47.76  Aligned_cols=20  Identities=10%  Similarity=-0.017  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+..
T Consensus         4 ~~i~G~sGsGKttl~~-~l~~   23 (179)
T TIGR02322         4 IYVVGPSGAGKDTLLD-YARA   23 (179)
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6655

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.37  E-value=0.0089  Score=48.01  Aligned_cols=21  Identities=5%  Similarity=0.119  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+..
T Consensus         4 ~i~l~G~sGsGKsTl~~-~l~~   24 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLA-ALRQ   24 (186)
T ss_pred             EEEEECCCCCCHHHHHH-HHhc
Confidence            38999999999999996 6654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.36  E-value=0.0086  Score=49.13  Aligned_cols=23  Identities=22%  Similarity=-0.119  Sum_probs=19.1

Q ss_pred             EEecCCCCCHHHHHHHHHHHHHh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++||++.+-+.|++.-+...+.+
T Consensus       163 PTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHc
Confidence            89999999999998887766544

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.32  E-value=0.0097  Score=44.08  Aligned_cols=20  Identities=0%  Similarity=0.031  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||++. .+..
T Consensus         1 I~i~G~~GsGKtTia~-~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAK-ELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             CEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999996 5655

...

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.29  E-value=0.0092  Score=47.32  Aligned_cols=39  Identities=23%  Similarity=0.049  Sum_probs=23.3

Q ss_pred             CCCcEEEEeeCC-CccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         152 GEKAVILVANKA-DLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       152 ~~~piilv~nK~-Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++.|++.+..+. +.+        -..++....+..+++++..+...+
T Consensus       124 s~~~vi~vv~~~~~~~--------~l~~i~~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  124 SNKPVIGVVHKRSDNP--------FLEEIKRRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTSEEEEE--SS--SC--------CHHHHHTTTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEEecCCCcH--------HHHHHHhCCCcEEEEeChhHHhhH
Confidence            678888887777 421        144556666788999988877665

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK01889 GTPase RsgA; Reviewed

Probab=95.25  E-value=0.01  Score=52.85  Aligned_cols=21  Identities=5%  Similarity=0.059  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++++|.+|+|||||++ .+.+
T Consensus       197 ~~~lvG~sgvGKStLin-~L~g  217 (356)
T PRK01889        197 TVALLGSSGVGKSTLVN-ALLG  217 (356)
T ss_pred             EEEEECCCCccHHHHHH-HHHH
Confidence            49999999999999998 6765

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.20  E-value=0.011  Score=46.96  Aligned_cols=21  Identities=5%  Similarity=0.214  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|++|+|||||++ .+..
T Consensus         3 ii~l~G~~GsGKsTl~~-~L~~   23 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVK-ALLE   23 (180)
T ss_pred             EEEEECCCCCCHHHHHH-HHHc
Confidence            38999999999999997 6766

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.20  E-value=0.012  Score=43.52  Aligned_cols=21  Identities=5%  Similarity=0.188  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++++|++|+|||+++. .++.
T Consensus         4 ~~~l~G~~G~GKTtl~~-~l~~   24 (148)
T smart00382        4 VILIVGPPGSGKTTLAR-ALAR   24 (148)
T ss_pred             EEEEECCCCCcHHHHHH-HHHh
Confidence            38999999999999996 6666

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG4639 Predicted kinase [General function prediction only]

Probab=95.18  E-value=0.011  Score=45.84  Aligned_cols=16  Identities=0%  Similarity=0.206  Sum_probs=15.4

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      ++++|.+|+||||++.
T Consensus         5 vvL~G~~~sGKsT~ak   20 (168)
T COG4639           5 VVLRGASGSGKSTFAK   20 (168)
T ss_pred             EEEecCCCCchhHHHH
Confidence            8999999999999997

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.16  E-value=0.011  Score=44.88  Aligned_cols=20  Identities=5%  Similarity=0.165  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|++|+|||+|+. .++.
T Consensus         2 vlL~G~~G~GKt~l~~-~la~   21 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLAR-ELAA   21 (139)
T ss_dssp             EEEEESSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.15  E-value=0.012  Score=51.68  Aligned_cols=20  Identities=5%  Similarity=0.087  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+.+
T Consensus        32 ~vllGPSGcGKSTlLr-~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLR-MIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999995 5544

>KOG2423|consensus

Probab=95.14  E-value=0.022  Score=50.68  Aligned_cols=47  Identities=9%  Similarity=-0.057  Sum_probs=0.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------EEEEEeCCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------FIVYSDTNH   97 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------~i~i~Dt~g   97 (250)
                      +.|-|.+||-||+||||+|| .+-....--...+.....         .|.++|.+|
T Consensus       306 kqISVGfiGYPNvGKSSiIN-TLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIIN-TLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cceeeeeecCCCCchHHHHH-HHhhcccccccCCCCcchHHHHHHHHhceeEecCCC

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.13  E-value=0.012  Score=42.94  Aligned_cols=19  Identities=11%  Similarity=0.188  Sum_probs=16.7

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++++|++|+|||||+. .+.
T Consensus        18 v~I~GpSGsGKSTLl~-~l~   36 (107)
T cd00820          18 VLITGDSGIGKTELAL-ELI   36 (107)
T ss_pred             EEEEcCCCCCHHHHHH-Hhh
Confidence            8999999999999996 443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.12  E-value=0.02  Score=46.91  Aligned_cols=24  Identities=0%  Similarity=0.140  Sum_probs=19.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ....|+|+|++|||||||++ .+..
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~-~L~~   35 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLA-RMRE   35 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHH-HHHh
Confidence            34458999999999999997 6654

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.11  E-value=0.096  Score=44.78  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=38.0

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ..+-.+||.|.+-..  +++..+++.+.     .-.+-=+|.||.|...    ..-.+..++...+.|+..++  +|+++
T Consensus       184 ~~~~~~LVl~a~~~~--~d~~~~~~~f~-----~~~~~~~I~TKlDet~----~~G~~l~~~~~~~~Pi~~it--~Gq~v  250 (270)
T PRK06731        184 EPDYICLTLSASMKS--KDMIEIITNFK-----DIHIDGIVFTKFDETA----SSGELLKIPAVSSAPIVLMT--DGQDV  250 (270)
T ss_pred             CCCeEEEEEcCccCH--HHHHHHHHHhC-----CCCCCEEEEEeecCCC----CccHHHHHHHHHCcCEEEEe--CCCCC
Confidence            456788899876321  22333434331     1123455679999643    22345667777888865553  45554


Q ss_pred             H
Q psy5810         199 D  199 (250)
Q Consensus       199 ~  199 (250)
                      .
T Consensus       251 p  251 (270)
T PRK06731        251 K  251 (270)
T ss_pred             C
Confidence            4

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.11  E-value=0.013  Score=45.93  Aligned_cols=23  Identities=4%  Similarity=0.054  Sum_probs=19.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .+||.|-|.||||||||+. ++.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~-ki~e   27 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVL-KIAE   27 (179)
T ss_pred             ceEEEEeCCCCccHHHHHH-HHHH
Confidence            3679999999999999996 6654

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.07  E-value=0.016  Score=46.77  Aligned_cols=22  Identities=14%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhchhhhccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      -|+|+|++|||||||++ ++...
T Consensus         6 ~ivl~GpsG~GK~tl~~-~l~~~   27 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQ-ALLEE   27 (186)
T ss_pred             EEEEECCCCCCHHHHHH-HHHhc
Confidence            39999999999999997 67663

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=95.07  E-value=0.059  Score=43.81  Aligned_cols=42  Identities=17%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ   99 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~   99 (250)
                      ++|.|.+|+|||+++. .++.   ....++.+....+.+.|..|..
T Consensus        41 ~li~G~tgsGKS~~l~-~ll~---~l~~~~~p~~~~l~iiD~k~~~   82 (205)
T PF01580_consen   41 LLIAGATGSGKSTLLR-TLLL---SLALTYSPDDVQLYIIDPKGSD   82 (205)
T ss_dssp             EEEE--TTSSHHHHHH-HHHH---HHHTT--TTTEEEEEE-TTSSC
T ss_pred             EEEEcCCCCCccHHHH-HHHH---HHHHHhcCCccEEEEEcCCccc
Confidence            9999999999999995 5554   4445556666778899988653

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.05  E-value=0.014  Score=46.69  Aligned_cols=19  Identities=11%  Similarity=0.053  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++|+|++|+|||||++ .+.
T Consensus        24 ~~l~G~nG~GKSTLl~-~il   42 (176)
T cd03238          24 VVVTGVSGSGKSTLVN-EGL   42 (176)
T ss_pred             EEEECCCCCCHHHHHH-HHh
Confidence            9999999999999996 543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0467|consensus

Probab=94.99  E-value=0.052  Score=51.93  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCc--cccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQ--RCLTP  104 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~--~~~~~  104 (250)
                      +.++..-.-|||||.. .++...+...+                +-|.|..           .+.++|++|.-  .+...
T Consensus        12 ~~~vahvdhgktslad-sl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs   90 (887)
T KOG0467|consen   12 ICLVAHVDHGKTSLAD-SLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS   90 (887)
T ss_pred             EEEEEEecCCccchHH-HHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence            8888888899999996 44432122111                1122221           46678999863  33333


Q ss_pred             CccccccccccccCCCcEEEEEEeCCCH---HhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810         105 MPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKKAED-MLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus       105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                      .-.+          -+|++++..|+-..   ++..-+++ |++         ....+||.||+|
T Consensus        91 sas~----------l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkid  135 (887)
T KOG0467|consen   91 SASR----------LSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKID  135 (887)
T ss_pred             hhhh----------hcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhh
Confidence            3333          47999999998663   34433332 433         456788999999

>PRK03839 putative kinase; Provisional

Probab=94.98  E-value=0.012  Score=46.93  Aligned_cols=21  Identities=0%  Similarity=0.104  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+|+||||+.. ++..
T Consensus         2 ~I~l~G~pGsGKsT~~~-~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSK-LLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999995 6655

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.97  E-value=0.012  Score=45.13  Aligned_cols=20  Identities=15%  Similarity=0.120  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|..|+|||||+. .+++
T Consensus         3 v~VvG~~~sGKTTl~~-~Li~   22 (140)
T PF03205_consen    3 VQVVGPKNSGKTTLIR-KLIN   22 (140)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 7766

>KOG0066|consensus

Probab=94.94  E-value=0.073  Score=48.26  Aligned_cols=22  Identities=5%  Similarity=-0.002  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhhhchhhhccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      +|+|+|+.|||||||+. .+++.
T Consensus       615 RiaIVGPNGVGKSTlLk-LL~Gk  636 (807)
T KOG0066|consen  615 RIAIVGPNGVGKSTLLK-LLIGK  636 (807)
T ss_pred             eeEEECCCCccHHHHHH-HHhcC
Confidence            39999999999999996 66653

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=94.92  E-value=0.014  Score=43.55  Aligned_cols=20  Identities=5%  Similarity=0.212  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||++++ ++..
T Consensus         7 ~~i~G~~G~GKT~~~~-~~~~   26 (131)
T PF13401_consen    7 LVISGPPGSGKTTLIK-RLAR   26 (131)
T ss_dssp             EEEEE-TTSSHHHHHH-HHHH
T ss_pred             cEEEcCCCCCHHHHHH-HHHH
Confidence            8999999999999997 7766

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.89  E-value=0.013  Score=46.33  Aligned_cols=20  Identities=5%  Similarity=0.255  Sum_probs=15.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|++ ++..
T Consensus        27 ~ll~G~~G~GKT~ll~-~~~~   46 (185)
T PF13191_consen   27 LLLTGESGSGKTSLLR-ALLD   46 (185)
T ss_dssp             EEE-B-TTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999997 6655

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=94.81  E-value=0.015  Score=48.74  Aligned_cols=22  Identities=5%  Similarity=0.113  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+|.+|+|||+|+. .+..
T Consensus        14 fr~viIG~sGSGKT~li~-~lL~   35 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIK-SLLY   35 (241)
T ss_pred             ceEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999985 5444

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.80  E-value=0.016  Score=46.23  Aligned_cols=21  Identities=0%  Similarity=0.042  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||++. .+..
T Consensus         5 ii~i~G~~GsGKsTl~~-~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCE-KIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6663

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14530 adenylate kinase; Provisional

Probab=94.79  E-value=0.017  Score=47.49  Aligned_cols=21  Identities=5%  Similarity=0.052  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+||||||+.. .+..
T Consensus         5 ~I~i~G~pGsGKsT~~~-~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSS-NLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999996 6654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.76  E-value=0.015  Score=47.65  Aligned_cols=15  Identities=7%  Similarity=-0.013  Sum_probs=14.5

Q ss_pred             EEEEcCCCCchhhhc
Q psy5810          54 FIVHSDTNHTQRCLT   68 (250)
Q Consensus        54 i~iiG~~~vGKSsLi   68 (250)
                      -++||++|||||||+
T Consensus        36 TAlIGPSGcGKST~L   50 (253)
T COG1117          36 TALIGPSGCGKSTLL   50 (253)
T ss_pred             EEEECCCCcCHHHHH
Confidence            789999999999999

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.74  E-value=0.019  Score=47.08  Aligned_cols=20  Identities=0%  Similarity=0.017  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        32 ~~i~G~nGsGKSTLl~-~l~G   51 (216)
T TIGR00960        32 VFLVGHSGAGKSTFLK-LILG   51 (216)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 5665

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.73  E-value=0.019  Score=47.11  Aligned_cols=20  Identities=5%  Similarity=0.051  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        33 ~~l~G~nGsGKSTLl~-~i~G   52 (218)
T cd03255          33 VAIVGPSGSGKSTLLN-ILGG   52 (218)
T ss_pred             EEEEcCCCCCHHHHHH-HHhC
Confidence            9999999999999996 6665

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=94.69  E-value=0.031  Score=48.91  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNH   97 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g   97 (250)
                      ..|++.|-+|+|||||+| .++..       +.++..-+.+|||+.
T Consensus       174 ~NILisGGTGSGKTTlLN-al~~~-------i~~~eRvItiEDtaE  211 (355)
T COG4962         174 CNILISGGTGSGKTTLLN-ALSGF-------IDSDERVITIEDTAE  211 (355)
T ss_pred             eeEEEeCCCCCCHHHHHH-HHHhc-------CCCcccEEEEeehhh
Confidence            469999999999999999 77662       112224567899984

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.68  E-value=0.019  Score=45.95  Aligned_cols=20  Identities=0%  Similarity=-0.051  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        28 ~~l~G~nGsGKSTLl~-~l~G   47 (177)
T cd03222          28 IGIVGPNGTGKTTAVK-ILAG   47 (177)
T ss_pred             EEEECCCCChHHHHHH-HHHc
Confidence            9999999999999996 5555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08233 hypothetical protein; Provisional

Probab=94.68  E-value=0.017  Score=45.72  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +-|+|.|.+|+|||||.. ++..
T Consensus         4 ~iI~I~G~~GsGKtTla~-~L~~   25 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTE-RLTH   25 (182)
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh
Confidence            448889999999999997 6765

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.68  E-value=0.018  Score=46.96  Aligned_cols=20  Identities=5%  Similarity=0.084  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        30 ~~l~G~nGsGKSTLl~-~l~G   49 (211)
T cd03225          30 VLIVGPNGSGKSTLLR-LLNG   49 (211)
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 6665

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.67  E-value=0.016  Score=46.88  Aligned_cols=20  Identities=0%  Similarity=0.051  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+|||||||.+ .+.+
T Consensus         2 igi~G~~GsGKSTl~~-~l~~   21 (198)
T cd02023           2 IGIAGGSGSGKTTVAE-EIIE   21 (198)
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999996 6655

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.66  E-value=0.021  Score=46.50  Aligned_cols=20  Identities=5%  Similarity=0.125  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        29 ~~i~G~nGsGKSTLl~-~l~G   48 (205)
T cd03226          29 IALTGKNGAGKTTLAK-ILAG   48 (205)
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999996 6665

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00235 udk uridine kinase

Probab=94.64  E-value=0.016  Score=47.30  Aligned_cols=22  Identities=0%  Similarity=0.101  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .-|+|+|.+|+|||||++ .+.+
T Consensus         7 ~vi~I~G~sGsGKSTl~~-~l~~   28 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVAR-KIYE   28 (207)
T ss_pred             EEEEEECCCCCCHHHHHH-HHHH
Confidence            349999999999999996 6665

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.63  E-value=0.02  Score=46.05  Aligned_cols=20  Identities=5%  Similarity=0.021  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        21 ~~i~G~nGsGKSTLl~-~i~G   40 (190)
T TIGR01166        21 LALLGANGAGKSTLLL-HLNG   40 (190)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 5555

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13695 putative NTPase; Provisional

Probab=94.61  E-value=0.017  Score=45.82  Aligned_cols=21  Identities=5%  Similarity=-0.024  Sum_probs=18.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      +||+|+|.+|+|||||+. .+.
T Consensus         1 ~~i~ltG~~G~GKTTll~-~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVL-KIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHH-HHH
Confidence            479999999999999996 543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.61  E-value=0.02  Score=46.82  Aligned_cols=23  Identities=4%  Similarity=0.134  Sum_probs=19.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ...|+|.|.+|||||||.+ .+..
T Consensus         6 ~~iI~I~G~sGsGKTTl~~-~l~~   28 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVAS-TIYE   28 (209)
T ss_pred             CEEEEEECCCCCCHHHHHH-HHHH
Confidence            4559999999999999996 6655

>PRK00300 gmk guanylate kinase; Provisional

Probab=94.61  E-value=0.018  Score=46.74  Aligned_cols=20  Identities=5%  Similarity=0.190  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|+|||||+. .+..
T Consensus         8 i~i~G~sGsGKstl~~-~l~~   27 (205)
T PRK00300          8 IVLSGPSGAGKSTLVK-ALLE   27 (205)
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            9999999999999996 6655

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.60  E-value=0.23  Score=43.44  Aligned_cols=68  Identities=15%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             CcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++-++++.|.+- ..+++..+.+-+-+       ++ --+|.+|.|-...-.+    +...+..+++|+..+-  -|+++
T Consensus       258 p~e~llvlDAttGqnal~QAk~F~eav-------~l-~GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~  323 (340)
T COG0552         258 PHEILLVLDATTGQNALSQAKIFNEAV-------GL-DGIILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGY  323 (340)
T ss_pred             CceEEEEEEcccChhHHHHHHHHHHhc-------CC-ceEEEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCCh
Confidence            456888889876 45666655433322       22 2345699996443222    3446677899976663  34455


Q ss_pred             HHH
Q psy5810         199 DEL  201 (250)
Q Consensus       199 ~~l  201 (250)
                      +++
T Consensus       324 ~DL  326 (340)
T COG0552         324 DDL  326 (340)
T ss_pred             hhc
Confidence            544

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.59  E-value=0.022  Score=47.44  Aligned_cols=20  Identities=5%  Similarity=0.082  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        29 ~~l~G~nGsGKSTLl~-~l~G   48 (235)
T cd03261          29 LAIIGPSGSGKSTLLR-LIVG   48 (235)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 6665

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.58  E-value=0.02  Score=46.77  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+.+
T Consensus        27 ~~~i~G~nGsGKSTLl~-~l~G   47 (211)
T cd03264          27 MYGLLGPNGAGKTTLMR-ILAT   47 (211)
T ss_pred             cEEEECCCCCCHHHHHH-HHhC
Confidence            49999999999999996 5665

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.57  E-value=0.021  Score=50.47  Aligned_cols=20  Identities=5%  Similarity=0.026  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.++|++||||||++. .+.+
T Consensus        34 ~~lLGPSGcGKTTlLR-~IAG   53 (352)
T COG3842          34 VTLLGPSGCGKTTLLR-MIAG   53 (352)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8899999999999993 5554

>PF05729 NACHT: NACHT domain

Probab=94.57  E-value=0.019  Score=44.33  Aligned_cols=20  Identities=5%  Similarity=0.182  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+++. .++.
T Consensus         3 l~I~G~~G~GKStll~-~~~~   22 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLR-KLAQ   22 (166)
T ss_pred             EEEECCCCCChHHHHH-HHHH
Confidence            7899999999999996 6665

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=94.56  E-value=0.019  Score=45.95  Aligned_cols=21  Identities=5%  Similarity=0.177  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ++|.|++|||||||+. .+...
T Consensus         7 ~vlsgPSG~GKsTl~k-~L~~~   27 (191)
T COG0194           7 IVLSGPSGVGKSTLVK-ALLED   27 (191)
T ss_pred             EEEECCCCCCHHHHHH-HHHhh
Confidence            8999999999999997 66664

>PRK13949 shikimate kinase; Provisional

Probab=94.54  E-value=0.02  Score=45.38  Aligned_cols=21  Identities=5%  Similarity=0.010  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+|+||||+.. .+..
T Consensus         3 ~I~liG~~GsGKstl~~-~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGK-ALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999995 5554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.53  E-value=0.021  Score=46.61  Aligned_cols=20  Identities=5%  Similarity=-0.042  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        29 ~~i~G~nGsGKSTLl~-~l~G   48 (210)
T cd03269          29 FGLLGPNGAGKTTTIR-MILG   48 (210)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6665

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.52  E-value=0.059  Score=39.16  Aligned_cols=20  Identities=5%  Similarity=0.079  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |.|.|++|+|||+|.+ .++.
T Consensus         1 I~i~G~~G~GKS~l~~-~l~~   20 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAK-ELAK   20 (107)
T ss_pred             CEEECCCCCCHHHHHH-HHHH
Confidence            5689999999999997 6665

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.52  E-value=0.023  Score=46.44  Aligned_cols=20  Identities=5%  Similarity=0.044  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        30 ~~i~G~nGsGKSTLl~-~l~G   49 (214)
T cd03292          30 VFLVGPSGAGKSTLLK-LIYK   49 (214)
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999995 5665

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=94.51  E-value=0.023  Score=46.76  Aligned_cols=20  Identities=5%  Similarity=0.014  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        29 ~~i~G~nGsGKSTLl~-~i~G   48 (220)
T cd03265          29 FGLLGPNGAGKTTTIK-MLTT   48 (220)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6665

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.51  E-value=0.023  Score=47.47  Aligned_cols=20  Identities=5%  Similarity=-0.012  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        31 ~~l~G~nGsGKSTLl~-~l~G   50 (243)
T TIGR02315        31 VAIIGPSGAGKSTLLR-CINR   50 (243)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 6665

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14532 adenylate kinase; Provisional

Probab=94.50  E-value=0.02  Score=45.88  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+++|.+||||||+.. ++..
T Consensus         2 ~i~~~G~pGsGKsT~a~-~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAK-RLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999995 6654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.49  E-value=0.024  Score=46.10  Aligned_cols=20  Identities=5%  Similarity=0.129  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        27 ~~i~G~nGsGKSTLl~-~l~G   46 (206)
T TIGR03608        27 YAIIGESGSGKSTLLN-IIGL   46 (206)
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999996 6665

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=94.49  E-value=0.02  Score=45.24  Aligned_cols=21  Identities=0%  Similarity=0.067  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++|+|.|.||+||||+.+ ++.
T Consensus         1 m~I~ITGTPGvGKTT~~~-~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCK-LLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHH-HHH
Confidence            369999999999999997 555

>PF13173 AAA_14: AAA domain

Probab=94.48  E-value=0.022  Score=42.79  Aligned_cols=20  Identities=10%  Similarity=0.157  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|+.+||||||+. ++..
T Consensus         5 ~~l~G~R~vGKTtll~-~~~~   24 (128)
T PF13173_consen    5 IILTGPRGVGKTTLLK-QLAK   24 (128)
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6665

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.47  E-value=0.022  Score=46.85  Aligned_cols=20  Identities=5%  Similarity=0.044  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        29 ~~i~G~nGsGKSTLl~-~l~G   48 (222)
T cd03224          29 VALLGRNGAGKTTLLK-TIMG   48 (222)
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 5655

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-11
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		5e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		7e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-10
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-08
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-07
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-07
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-07
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-06
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-06
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-06
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-06
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-06
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-06
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-06
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-06
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-06
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-06
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-06
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-06
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-06
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		8e-06
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		9e-06
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		9e-06
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		9e-06
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-05
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-05
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-05
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-04
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-04
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-04
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-04
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-04
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-04
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-04
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-04
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-04
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-04

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
            D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           A  +  KF+ETS  + +   EL  GI RQ
Sbjct: 141 AVVFDXKFIETSAAVQHNVKELFEGIVRQ 169

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
            D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           A  +  KF+ETS  + +   EL  GI RQ
Sbjct: 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 200

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
            D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           A  +  KF+ETS  + +   EL  GI RQ
Sbjct: 141 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 169

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
            D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           A  +  KF+ETS  + +   EL  GI RQ
Sbjct: 141 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 169

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 98  DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 157
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
                K +ETS  L + T EL  G  RQ
Sbjct: 158 GTLSCKHIETSAALHHNTRELFEGAVRQ 185

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 77  DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 136
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
                K +ETS  L + T EL  G  RQ
Sbjct: 137 GTLSCKHIETSAALHHNTRELFEGAVRQ 164

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 87  DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 146
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
                K +ETS  L + T EL  G  RQ
Sbjct: 147 GTLSCKHIETSAALHHNTRELFEGAVRQ 174

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYSV ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 74  DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 133
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
             +  KF+ETS  L +    L  G+ RQ
Sbjct: 134 VVFDCKFIETSAALHHNVQALFEGVVRQ 161

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYSV ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 79  DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
             +  KF+ETS  L +    L  G+ RQ
Sbjct: 139 VVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYSV ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 79  DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
             +  KF+ETS  L +    L  G+ RQ
Sbjct: 139 VVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           +V+VYSV    +F+  E + + L +        V+LV NKADL   R+V   +GKKLA +
Sbjct: 99  YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158
Query: 183 WGVKFVETSVGLVYKTDELLVGI 205
           WG  F+E+S     + ++L  GI
Sbjct: 159 WGATFMESSA----RENQLTQGI 177

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181
            +VIVYS+ +R +F+ A ++   L  +       +ILV NKADL R R+V+  +G+  A 
Sbjct: 80  AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV 139
Query: 182 AWGVKFVETSVGLVYKTDELLVG 204
            +  KF+ETS  L +   EL  G
Sbjct: 140 VFDCKFIETSATLQHNVAELFEG 162

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ S+G+ LA  
Sbjct: 78  FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           WG  F+ETS       DEL   I RQ
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQ 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165
            F +  E +++T   + F++V+SV +R +F++     + +   K   E  +IL+ NKADL
Sbjct: 65  EFGAMREQYMRT--GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122
Query: 166 ERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200
           + +RQVT  +G++LA    V ++E S  +    D+
Sbjct: 123 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQ 157

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           F +  E +++T   D F+IVYSV ++ +F+  +   + +   K      +ILVANK DL 
Sbjct: 74  FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 131
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSVGL----VYKTDELLVGIARQ 208
             R+VT   GK++A  + + ++ETS       V KT   LV + RQ
Sbjct: 132 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           F +  E +++T   D F+IVYSV ++ +F+  +   + +   K      +ILVANK DL 
Sbjct: 79  FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
             R+VT   GK++A  + + ++ETS 
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           F +  E +++T   D F+IVYSV ++ +F+  +   + +   K      +ILVANK DL 
Sbjct: 79  FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
             R+VT   GK++A  + + ++ETS 
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           F +  E +++T   D F+IVYSV ++ +F+  +   + +   K      +ILVANK DL 
Sbjct: 79  FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
             R+VT   GK++A  + + ++ETS 
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 79  FVQTYHPDV--FFIVYSDTNHTQRCLTPMPFCSQVEN--FVQTYHPDV--FVIVYSVIER 132
           FV +Y P +   F      N  +  L  +    Q E   F QTY  D+  +++VYSV   
Sbjct: 26  FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI 85
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
           K+F+  + +   L D     +  ++LV NK DL   R +++ +GK LA +W   F+E+S
Sbjct: 86  KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 144

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
           F QTY  D+  +++VYSV   K+F+  + +   L D     +  ++LV NK DL   R +
Sbjct: 70  FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 172 THSDGKKLAYAWGVKFVETS 191
           ++ +GK LA +W   F+E+S
Sbjct: 130 SYEEGKALAESWNAAFLESS 149

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
           F QTY  D+  +++VYSV   K+F+  + +   L D     +  ++LV NK DL   R +
Sbjct: 70  FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 172 THSDGKKLAYAWGVKFVETSV 192
           ++ +GK LA +W   F+E+S 
Sbjct: 130 SYEEGKALAESWNAAFLESSA 150

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
           F QTY  D+  +++VYSV   K+F+  + +   L D     +  ++LV NK DL   R +
Sbjct: 68  FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 127
Query: 172 THSDGKKLAYAWGVKFVETS 191
           ++ +GK LA +W   F+E+S
Sbjct: 128 SYEEGKALAESWNAAFLESS 147

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           F +  E +++  H   F++V+++ +R++F +   +   +   K   +  V+LV NKADLE
Sbjct: 70  FGAMREQYMRAGH--GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207
            +RQV  S+      +  V + E S  L    DE    + R
Sbjct: 128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLAY 181
           F++V+S+ E ++F    +  + +   K   +K  +++V NK+DLE RRQV   + +  A 
Sbjct: 82  FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAE 141
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
            WGV++VETS       D++   + R+
Sbjct: 142 EWGVQYVETSAKTRANVDKVFFDLMRE 168

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLAY 181
           F++V+S+ E ++F    +  + +   K   +K  +++V NK+DLE RRQV   + +  A 
Sbjct: 78  FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAE 137
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
            WGV++VETS       D++   + R+
Sbjct: 138 EWGVQYVETSAKTRANVDKVFFDLMRE 164

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79  FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
           FV+ Y P +            Q+C+  +   +  E F         +   F +VYS+  +
Sbjct: 30  FVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 89
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
            TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  W    F+E+S
Sbjct: 90  STFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 149
Query: 192 VGLVYKTDELLVGIARQ 208
                  +E+   + RQ
Sbjct: 150 AKSKINVNEIFYDLVRQ 166

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79  FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
           FV+ Y P +            Q+C+  +   +  E F         +   F +VYS+  +
Sbjct: 28  FVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
            TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  W    F+E+S
Sbjct: 88  STFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147
Query: 192 VGLVYKTDELLVGIARQ 208
                  +E+   + RQ
Sbjct: 148 AKSKINVNEIFYDLVRQ 164

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79  FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
           FV+ Y P +            Q+C+  +   +  E F         +   F +VYS+  +
Sbjct: 28  FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
            TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  W    F+E+S
Sbjct: 88  STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147
Query: 192 VGLVYKTDELLVGIARQ 208
                  +E+   + RQ
Sbjct: 148 AKSKINVNEIFYDLVRQ 164

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F +VYS+  + TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  
Sbjct: 78  FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137
Query: 183 W-GVKFVETSVGLVYKTDELLVGIARQ 208
           W    F+E+S       +E+   + RQ
Sbjct: 138 WCNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 89  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           W V +VETS       D++   + R+
Sbjct: 149 WNVNYVETSAKTRANVDKVFFDLMRE 174

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 93  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           W V +VETS       D++   + R+
Sbjct: 153 WNVNYVETSAKTRANVDKVFFDLMRE 178

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 81  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           W V +VETS       D++   + R+
Sbjct: 141 WNVNYVETSAKTRANVDKVFFDLMRE 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 81  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           W V +VETS       D++   + R+
Sbjct: 141 WNVNYVETSAKTRANVDKVFFDLMRE 166

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
            +IVY V +R +F   +  ++ +   +Y  E    +LV NK DL  +R VT  +G++LA 
Sbjct: 85  IIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELAD 142
Query: 182 AWGVKFVETSVGLVYKTDE 200
           + G+KF+ETS    Y  ++
Sbjct: 143 SHGIKFIETSAKNAYNVEQ 161

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 79  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
           W V +VETS       D++   + R+
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMRE 164

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           FV+VY + +R +F++   +   L + K      +ILV NKADL+  RQV+  +G+KLA  
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161
Query: 183 WGVKFVETSV 192
               F E S 
Sbjct: 162 LACAFYECSA 171

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLA 180
            F++VYS+  R++ ++ + + + + + K   E   ++LV NK D    R+V  S+ + LA
Sbjct: 77  AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA 136
Query: 181 YAWGVKFVETSVGLVYKTDEL 201
             W   F+ETS  L +   EL
Sbjct: 137 RTWKCAFMETSAKLNHNVKEL 157

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 123 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
           F+++Y +  +++F   +D    +KT  WD+       VILV NK DLE  R V   DG++
Sbjct: 98  FLLMYDIANQESFAAVQDWATQIKTYSWDNA-----QVILVGNKCDLEDERVVPAEDGRR 152
Query: 179 LAYAWGVKFVETSV 192
           LA   G +F E S 
Sbjct: 153 LADDLGFEFFEASA 166

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +  +++F    + +  L  + Y     ++L+ NKADL  +R+V     ++LA  
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170
Query: 183 WGVKFVETSV 192
           +G+ + ETS 
Sbjct: 171 YGIPYFETSA 180

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +  +++F    + +  L  + Y     ++L+ NKADL  +R+V     ++LA  
Sbjct: 97  FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
           +G+ + ETS 
Sbjct: 157 YGIPYFETSA 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +  +++F    + +  L  + Y     ++L+ NKADL  +R+V     ++LA  
Sbjct: 97  FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
           +G+ + ETS 
Sbjct: 157 YGIPYFETSA 166

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           ++VY +   K+F    + ++ + +      + +IL  NK D+  +RQV+   G+KLA  +
Sbjct: 83  MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKERGEKLALDY 141
Query: 184 GVKFVETSV 192
           G+KF+ETS 
Sbjct: 142 GIKFMETSA 150

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           ++L+ NK+DLE RR+V   +G+  A   G+ F+ETS       +E  +  A++
Sbjct: 118 IMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           ++VY +   K+F    + ++ + +      + +IL  NK D+  +RQV+   G+KLA  +
Sbjct: 85  MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKERGEKLALDY 143
Query: 184 GVKFVETSV 192
           G+KF+ETS 
Sbjct: 144 GIKFMETSA 152

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAY 181
           ++VY +  R+TF      L+   D++        ++L+ NK+DLE RR V   +G+  A 
Sbjct: 98  LLVYDITRRETFNHLTSWLE---DARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
             G+ F+ETS       +E  +  A++
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINTAKE 181

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA-NKADLERRRQVTHSDGKKLAYA 182
           VIVY + ++ +F   +  +K L   ++  E  V+ +A NK DL   R+V   D K+ A +
Sbjct: 100 VIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
            G   VETS       +EL  GI+RQ
Sbjct: 158 IGAIVVETSAKNAINIEELFQGISRQ 183

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
           V V+VY +    +F +     D ++T   S  I    ++LV NK DL  +RQV+  +G++
Sbjct: 89  VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI----IMLVGNKTDLSDKRQVSTEEGER 144
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
            A    V F+ETS    Y   +L   +A
Sbjct: 145 KAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +++TF      +K +   KY  E A ++LV NK D E  R++T   G+K A  
Sbjct: 103 ILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160
Query: 183 W-GVKFVETSVGLVYKTDELLV 203
             G++F E S    +  DE+ +
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFL 182

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
           V V+VY +    +F++     D ++T   S  I    ++LV NK DL  +RQ+T  +G++
Sbjct: 77  VAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI----IMLVGNKTDLADKRQITIEEGEQ 132
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
            A    V F+ETS    Y   +L   +A
Sbjct: 133 RAKELSVMFIETSAKTGYNVKQLFRRVA 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-22
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-21
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-20
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-20
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-20
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-20
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-18
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-18
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-18
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-18
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-18
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-17
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-17
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-17
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-17
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-17
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	9e-16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-15
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-15
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-15
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-13
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-12
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-12
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-12
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-12
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-12
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-12
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-12
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-12
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-12
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-12
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-12
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	7e-12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-11
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-11
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-11
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-11
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-11
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-11
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-11
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-11
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-11
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-11
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-11
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	9e-11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-10
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-10
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-10
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-10
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-10
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-10
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-10
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-10
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	8e-10
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-07
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-07
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-07
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	8e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-04

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 90.5 bits (225), Expect = 2e-22
 Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  A
Sbjct: 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 172

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
             +  KF+ETS  + +   EL  GI RQ  +  +R+ 
Sbjct: 173 VVFDCKFIETSAAVQHNVKELFEGIVRQ--VRLRRDS 207

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 86.1 bits (214), Expect = 4e-21
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           +VIVYS+ +R +F+ A ++   L  +       +ILV NKADL R R+V+  +G+  A  
Sbjct: 81  YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV 140

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
           +  KF+ETS  L +   EL  G+ RQ  L  +R  
Sbjct: 141 FDCKFIETSATLQHNVAELFEGVVRQ--LRLRRRD 173

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA
Sbjct: 77  DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 136

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
                K +ETS  L + T EL  G  RQ  +  +R
Sbjct: 137 GTLSCKHIETSAALHHNTRELFEGAVRQ--IRLRR 169

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 38/94 (40%), Positives = 54/94 (57%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+IV+SV +R++F K  + L  L   +   +  VILV NK+DL R R+V+  +G+ LA  
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN 216
              K +ETS  L + T EL  G  RQ  L + RN
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D ++IVYS+ +R +F+KA ++   L  ++   +  +ILV NK+DL R R+V+ S+G+  A
Sbjct: 82  DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA 141

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASY 229
             +  KF+ETS  + +   EL  GI RQ    + R     K ++++A  
Sbjct: 142 VVFDXKFIETSAAVQHNVKELFEGIVRQV---RLRRDSKEKNERRLAYQ 187

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 82.5 bits (205), Expect = 7e-20
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
           D +VIVYSV ++ +F+KA ++   L  ++   +  +ILV NK+DL R R+V+  +G+  A
Sbjct: 74  DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 133

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
             +  KF+ETS  L +    L  G+ RQ  +  +R
Sbjct: 134 VVFDCKFIETSAALHHNVQALFEGVVRQ--IRLRR 166

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 79.5 bits (197), Expect = 1e-18
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKL 179
             F++VYS+  R++ ++ + + + + + K   E   ++LV NK D    R+V  S+ + L
Sbjct: 76  HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 135

Query: 180 AYAWGVKFVETS 191
           A  W   F+ETS
Sbjct: 136 ARTWKCAFMETS 147

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           FV+VY + +R +F++   +   L + K      +ILV NKADL+  RQV+  +G+KLA  
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161

Query: 183 WGVKFVETS 191
               F E S
Sbjct: 162 LACAFYECS 170

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 78.0 bits (193), Expect = 6e-18
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLA 180
           F++VYSV  R++F  +   L+ L       ++++  +L+ NK D+ + RQVT ++G  LA
Sbjct: 95  FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA 154

Query: 181 YAWGVKFVETS 191
             +G  F E S
Sbjct: 155 GRFGCLFFEVS 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 77.6 bits (192), Expect = 7e-18
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+IVYSV ++ +F+  +   + +   K      +ILVANK DL   R+VT   GK++A  
Sbjct: 93  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK 152

Query: 183 WGVKFVETS 191
           + + ++ETS
Sbjct: 153 YNIPYIETS 161

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 77.6 bits (192), Expect = 8e-18
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           +++VYSV   K+F+  + +   L D     +  ++LV NK DL   R +++ +GK LA +
Sbjct: 81  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140

Query: 183 WGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKK 222
           W   F+E+S     K      ++   I  +    K        K
Sbjct: 141 WNAAFLESSA----KENQTAVDVFRRIILE--AEKMDGACSQGK 178

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 89  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148

Query: 183 WGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKKQKK 225
           W V +VETS     KT    D++   + R+  +  ++ +   +K  K
Sbjct: 149 WNVNYVETSA----KTRANVDKVFFDLMRE--IRARKMEDSKEKNGK 189

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ S+G+ LA  
Sbjct: 78  FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137

Query: 183 WGVKFVETS 191
           WG  F+ETS
Sbjct: 138 WGCPFMETS 146

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           +V+VYSV    +F+  E + + L +        V+LV NKADL   R+V   +GKKLA +
Sbjct: 99  YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158

Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKK 225
           WG  F+E+S      T  +   + ++  + +  N     ++++
Sbjct: 159 WGATFMESSARENQLTQGIFTKVIQE--IARVENS--YGQERR 197

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 93  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152

Query: 183 WGVKFVETS 191
           W V +VETS
Sbjct: 153 WNVNYVETS 161

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+S+ E ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  
Sbjct: 79  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138

Query: 183 WGVKFVETS 191
           W V +VETS
Sbjct: 139 WNVNYVETS 147

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 75.6 bits (187), Expect = 4e-17
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++V+++ +R++F +   +   +   K   +  V+LV NKADLE +RQV  S+      +
Sbjct: 84  FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS 143

Query: 183 WGVKFVETS 191
             V + E S
Sbjct: 144 HHVAYFEAS 152

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
           F++V+SV  +++ ++   + K +   K   E   V+LV NK D  +R +V   + + +A 
Sbjct: 83  FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDTREAQAVAQ 141

Query: 182 AWGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQ 235
            W   F+ETS     K      EL   +        +RN  L    K+        + 
Sbjct: 142 EWKCAFMETSA----KMNYNVKELFQELLTLE---TRRNMSLNIDGKRSGKQKRTDRV 192

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 71.4 bits (176), Expect = 9e-16
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F +VYS+  + TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  
Sbjct: 78  FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137

Query: 183 W-GVKFVETS 191
           W    F+E+S
Sbjct: 138 WCNCAFLESS 147

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+++   K+F+      + +   K   +  ++LV NK+DL  R  V     + LA +
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARS 136

Query: 183 WGVKFVETS 191
           +G+ ++ETS
Sbjct: 137 YGIPYIETS 145

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+++   K+F       + +   K   +  ++LV NK DL  R  V      +LA +
Sbjct: 96  FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKS 154

Query: 183 WGVKFVETS 191
           +G+ F+ETS
Sbjct: 155 YGIPFIETS 163

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F+ V+++   K+F+      + +   K   +  ++LV NK DL  R  V     + LA +
Sbjct: 79  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARS 137

Query: 183 WGVKFVETS 191
           +G+ F+ETS
Sbjct: 138 YGIPFIETS 146

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 64.1 bits (157), Expect = 7e-13
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL--ERRRQVTHSDGKKLA 180
            V V+S+ +  +F+   +    L   +   E  ++LV  +  +     R +  S  +KL+
Sbjct: 89  VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS 148

Query: 181 YAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
                  + ET        + +   +A++    +K+
Sbjct: 149 TDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +  +F+K ++ +K L   K +G +  + +V NK DLE+ R V+  + +  A +
Sbjct: 83  ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140

Query: 183 WGVKFVETS 191
            G K   TS
Sbjct: 141 VGAKHYHTS 149

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
              V+V+S  +R++F+      + +     +G+    LV NK DL     + + + + LA
Sbjct: 79  QACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136

Query: 181 YAWGVKFVETS 191
               ++F  TS
Sbjct: 137 KRLKLRFYRTS 147

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLA 180
           V V+VY +    +F +    +  +      G   +I LV NK DL  +RQV+  +G++ A
Sbjct: 89  VAVVVYDITNTNSFHQTSKWIDDV--RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA 146

Query: 181 YAWGVKFVETS 191
               V F+ETS
Sbjct: 147 KELNVMFIETS 157

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           +IV+ V  + +F++A+  ++ L          V+ L  NK+DL   R+VT  D +  A  
Sbjct: 89  IIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146

Query: 183 WGVKFVETS 191
            G+ F+ETS
Sbjct: 147 NGLFFMETS 155

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLA 180
           V V+VY +    +F++    +  +      G   +I LV NK DL  +RQV+  +G++ A
Sbjct: 91  VAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 148

Query: 181 YAWGVKFVETS 191
               V F+ETS
Sbjct: 149 KELNVMFIETS 159

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R+TF      L+     ++     VI L+ NK+DLE RR V   +G+  A  
Sbjct: 98  LLVYDITRRETFNHLTSWLEDA--RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 155

Query: 183 WGVKFVETS 191
            G+ F+ETS
Sbjct: 156 HGLIFMETS 164

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           +IVY + + +TF   ++ ++ L   ++     V+ +  NK DL   R+V   D K  A +
Sbjct: 83  IIVYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS 140

Query: 183 WGVKFVETS 191
               FVETS
Sbjct: 141 IHAIFVETS 149

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           VIVY + ++ +F   +  +K L   ++  E  V+ +  NK DL   R+V   D K+ A +
Sbjct: 100 VIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157

Query: 183 WGVKFVETS 191
            G   VETS
Sbjct: 158 IGAIVVETS 166

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAY 181
            ++VY V ++++F   +  L+ +   +Y  E     LV NK DL  ++ V ++  K+ A 
Sbjct: 92  IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149

Query: 182 AWGVKFVETS 191
           + G+ F+ETS
Sbjct: 150 SLGIPFLETS 159

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++V+ + + +T+   E  LK L    +     V+ LV NK+DL + R+V   + +  A  
Sbjct: 102 LLVFDLTKHQTYAVVERWLKEL--YDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159

Query: 183 WGVKFVETS 191
            G+ F+ETS
Sbjct: 160 NGLLFLETS 168

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV----ILVANKADLERRRQVTHSDG 176
           D  + V+S+ +  +F+    +   L   +  G   +    +   ++      R V  +  
Sbjct: 74  DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133

Query: 177 KKL-AYAWGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLA 220
           + L A      + ET            D +   +A++    +K+ +LLA
Sbjct: 134 RALXADMKRCSYYETXA----TYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R T+      L             VI L+ NKADLE +R VT+ + K+ A  
Sbjct: 92  LMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149

Query: 183 WGVKFVETS 191
            G+ F+E S
Sbjct: 150 NGLLFLEAS 158

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
            ++VY V   ++F   +  L  +  ++   +   ILV NK D   R+ V   D  K A  
Sbjct: 85  VIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ 142

Query: 183 WGVKFVETS 191
            G++  ETS
Sbjct: 143 MGIQLFETS 151

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 61.0 bits (149), Expect = 7e-12
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +   ++F +A++ +K L   +      VI L  NKADL  +R V   + +  A  
Sbjct: 83  IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140

Query: 183 WGVKFVETS 191
             + F+ETS
Sbjct: 141 NSLLFMETS 149

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 18/69 (26%), Positives = 39/69 (56%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +  +++F    + +  L  + Y     ++L+ NKADL  +R+V     ++LA  
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170

Query: 183 WGVKFVETS 191
           +G+ + ETS
Sbjct: 171 YGIPYFETS 179

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
            +IVY V ++++F   +  L+ +   +Y     + +LV NK DL+ +R V +   K+ A 
Sbjct: 84  IIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141

Query: 182 AWGVKFVETS 191
           A  + F+ETS
Sbjct: 142 ANKMPFLETS 151

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
           F++++ +   ++F    + +  L    Y     ++L  NK+DLE +R V   + ++LA  
Sbjct: 97  FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156

Query: 183 WGVKFVETS 191
           +G+ + ETS
Sbjct: 157 YGIPYFETS 165

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
           F+++Y +   ++F   +D    +    Y  + A  +LV NK D+E  R V+   G++LA 
Sbjct: 84  FILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141

Query: 182 AWGVKFVETS 191
             G +F E S
Sbjct: 142 HLGFEFFEAS 151

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R+T+      L             V+ L  NK DL+  R+VT  +  + A  
Sbjct: 102 LLVYDITSRETYNSLAAWLTDA--RTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE 159

Query: 183 WGVKFVETS 191
             + F+ETS
Sbjct: 160 NELMFLETS 168

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAY 181
           V VY +    +F      ++     +++    +  ILV NK DL    QV     +K A 
Sbjct: 98  VFVYDMTNMASFHSLPAWIEEC--KQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155

Query: 182 AWGVKFVETS 191
              +   ETS
Sbjct: 156 THSMPLFETS 165

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +  T++  E  LK L    +     VI LV NK+DL   R V   + +  A  
Sbjct: 82  LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139

Query: 183 WGVKFVETS 191
             + F+ETS
Sbjct: 140 NNLSFIETS 148

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY + +  T++  E  LK L    +     VI LV NK+DL   R V   + +  A  
Sbjct: 106 LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163

Query: 183 WGVKFVETS 191
            G+ F+ETS
Sbjct: 164 NGLSFIETS 172

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           +IVY + +  +++     L  L   +   +   + L+ NK+DL   R V   + K  A  
Sbjct: 90  LIVYDISKSSSYENCNHWLSEL--RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147

Query: 183 WGVKFVETSV 192
             + F ETS 
Sbjct: 148 NQLLFTETSA 157

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
           F+++Y +  +++F   +D    +    Y  + A  ILV NK DLE  R V   DG++LA 
Sbjct: 98  FLLMYDIANQESFAAVQDWATQI--KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD 155

Query: 182 AWGVKFVETS 191
             G +F E S
Sbjct: 156 DLGFEFFEAS 165

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
            ++VY V ++++F   +  L+ +   +Y  E    +LV NK DL  ++ V ++  K+ A 
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166

Query: 182 AWGVKFVETS 191
           + G+ F+ETS
Sbjct: 167 SLGIPFLETS 176

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAY 181
           ++VY +   ++F+  ED    +       E      LV NK DLE  R +      +   
Sbjct: 84  LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ 143

Query: 182 AWGVKFVETS 191
             G      S
Sbjct: 144 ENGFSSHFVS 153

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
            ++VY +   K+F    + ++ +   ++       +++ NK D+  +RQV+   G+KLA 
Sbjct: 84  IMLVYDITNEKSFDNIRNWIRNI--EEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 141

Query: 182 AWGVKFVETS 191
            +G+KF+ETS
Sbjct: 142 DYGIKFMETS 151

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           ++ Y +   ++F+   + L+ +   +Y   K + +LV NK DL  RR+V+    ++ + A
Sbjct: 103 ILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA 160

Query: 183 WGVKFVETS 191
             + ++ETS
Sbjct: 161 QDMYYLETS 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
            +++Y V  + +F   +  L  +   +Y       +L+ NK D    R V   DG+KLA 
Sbjct: 87  LLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144

Query: 182 AWGVKFVETS 191
            +G+ F+ETS
Sbjct: 145 EYGLPFMETS 154

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++VY +  R+T+    + L          +  VI L  NK DL+  R+VT  +  + A  
Sbjct: 87  LLVYDITSRETYNALTNWLTDA--RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE 144

Query: 183 WGVKFVETS 191
             + F+ETS
Sbjct: 145 NELMFLETS 153

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
           F+++Y +   ++F   +D    +    Y  + A  ILV NK D+E  R V    G+ LA 
Sbjct: 99  FILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE 156

Query: 182 AWGVKFVETS 191
             G  F E S
Sbjct: 157 QLGFDFFEAS 166

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 58.8 bits (143), Expect = 9e-11
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLE-RRRQVTHSDGKKLA 180
           ++V+ V   ++F+  +   + L  ++   E+ +  +LVANK DL  +R QV     +  A
Sbjct: 101 ILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160

Query: 181 YAWGVKFVETS 191
               + F + S
Sbjct: 161 TTNTLDFFDVS 171

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLA 180
            ++VY V  R TF K ++ L  L    Y     +  +LV NK D E R +V  ++G K A
Sbjct: 91  VILVYDVTRRDTFVKLDNWLNEL--ETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFA 147

Query: 181 YAWGVKFVETS 191
               + F+E S
Sbjct: 148 RKHSMLFIEAS 158

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 121 DVFVIVYSV--IERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
           D F++   V     + F      +  L++     +K +++V  K D    R +  +    
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 179 LAYAWGVKFVETS 191
           L+    ++ VETS
Sbjct: 224 LSK-KNLQVVETS 235

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
            ++VY + + +TF   +   KT+  +++  ++A  +LV NK+D+E R  VT   G+ LA 
Sbjct: 79  IILVYDITDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR-VVTADQGEALAK 135

Query: 182 AWGVKFVETS 191
             G+ F+E+S
Sbjct: 136 ELGIPFIESS 145

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
           ++ Y + +R +F      ++ +   KY G   V +L+ NK+DL   R+V+ ++ + LA  
Sbjct: 106 ILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163

Query: 183 WGVK-FVETS 191
           + +   +ETS
Sbjct: 164 YDILCAIETS 173

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
           ++ + V  R T +     +K       +G +A I + ANK D++ R++++     ++   
Sbjct: 89  ILFFDVTSRITCQNLARWVKEF--QAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG 146

Query: 183 WGVKFVETS 191
              ++ E S
Sbjct: 147 KNYEYFEIS 155

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAY 181
            ++VY V + +TF   +   KT+  +++  ++A + LV NK+D+E R  VT   G+ LA 
Sbjct: 96  IILVYDVTDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR-VVTADQGEALAK 152

Query: 182 AWGVKFVETS 191
             G+ F+E+S
Sbjct: 153 ELGIPFIESS 162

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           ++V+ +    T  +A+  +  L  S       +ILVANK D  +  QV   + +K A   
Sbjct: 121 IVVFDISNSNTLDRAKTWVNQLKISSNY---IIILVANKIDKNKF-QVDILEVQKYAQDN 176

Query: 184 GVKFVETS 191
            + F++TS
Sbjct: 177 NLLFIQTS 184

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLA- 180
            ++VY + +++TF      +K +   KY  E A  +LV NK D E  R++T   G+K A 
Sbjct: 102 IILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ 159

Query: 181 YAWGVKFVETS 191
              G++F E S
Sbjct: 160 QITGMRFCEAS 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADL------ERRRQVTHSDG 176
           +++Y V   K+F    + +  +       E   I LV NKAD+      E ++ V    G
Sbjct: 105 LLLYDVTCEKSFLNIREWVDMI--EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162

Query: 177 KKLAYAWGVKFVETS 191
           +KLA  +G  F ETS
Sbjct: 163 EKLAMTYGALFCETS 177

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAVI-LVANKADLERRRQVTHSDGK 177
           D  V+V+ V    TFK  +          S    E     ++ NK DLE R+  T     
Sbjct: 82  DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 141

Query: 178 KLAYAWGVKFVETS 191
                  + + ETS
Sbjct: 142 WCYSKNNIPYFETS 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 8e-08
 Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 55/265 (20%)

Query: 8   ENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQR-- 65
           ++I+  +     F+   D    Q    SI   S  E       H+  +     + T R  
Sbjct: 19  KDILSVFEDA--FVDNFDCKDVQDMPKSI--LSKEE-----IDHII-MSKDAVSGTLRLF 68

Query: 66  -CLTSMPFCSQVENFVQTYH-PDVFFIVYS-DTNHTQRCLTPMPFCSQVE---NFVQTYH 119
             L S      V+ FV+     +  F++    T   Q  +    +  Q +   N  Q + 
Sbjct: 69  WTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--------GEKAVILVANKADLERRRQV 171
                  Y+V   + + K    L  L  +K +        G K   +            V
Sbjct: 128 K------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTW-VAL---------DV 170

Query: 172 THSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYIN 231
             S   +    + + ++  ++      + +L        L  + +     +    ++   
Sbjct: 171 CLSYKVQCKMDFKIFWL--NLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 232 NIKQFK------WFSKVSCENLLVL 250
            I   +        SK     LLVL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL 250

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 121 DVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLE-RRRQVTHSDG 176
           D  V+VY V    +F+  +   D      +         +++ NK D E  ++ V+    
Sbjct: 83  DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142

Query: 177 KKLAYAWG-VKFVETS 191
           ++LA + G +    TS
Sbjct: 143 QELAKSLGDIPLFLTS 158

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
           +I++ V  R T+K   +  + L   +      ++L  NK D++ R+              
Sbjct: 92  IIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKK 147

Query: 184 GVKFVETS 191
            +++ + S
Sbjct: 148 NLQYYDIS 155

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 29/123 (23%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL--------ERRR 169
           D+FV+ +S+I + ++    + +   W     ++     ++LV  K DL        +   
Sbjct: 82  DIFVLAFSLISKASY----ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTN 137

Query: 170 QVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGI------ARQAGLNKKRNKLLAKK 222
            +T + G++L    G   ++E S     KT +    +      A +  L   R K + ++
Sbjct: 138 VITSTQGEELRKQIGAAAYIECSS----KTQQ---NVKAVFDTAIKVVLQPPRRKEVPRR 190

Query: 223 QKK 225
           +K 
Sbjct: 191 RKN 193

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL--ERRRQVTHSD 175
           DV ++ ++V  R +F          W+     YI     +LV  K DL  +    VT  +
Sbjct: 96  DVVLLCFAVNNRTSFDNISTK----WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQE 151

Query: 176 GKKLAYAWG-VKFVETS 191
           G  L    G V ++E S
Sbjct: 152 GDDLCQKLGCVAYIEAS 168

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAV-ILVANKADLERRRQVTHSDGKKLA 180
           ++ +SV + ++F+   +  K           E    +++ NK D+   RQV+  + +   
Sbjct: 84  LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWC 142

Query: 181 YAWG-VKFVETS 191
              G   + ETS
Sbjct: 143 RDNGDYPYFETS 154

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
            V++++      +T       L+ +   KY G+  VI+V NK D      +      +  
Sbjct: 123 SVYMLLLDS---RTDSNKHYWLRHI--EKYGGKSPVIVVMNKIDENPSYNIEQKKINERF 177

Query: 181 YAWGVKFVETS 191
            A   +F   S
Sbjct: 178 PAIENRFHRIS 188

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD---LERRRQVTHSDGKKLA 180
           ++VY V + ++F KA   +K L   +   +  + LV NK D       R+V   +G+KLA
Sbjct: 80  LVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLA 138

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
              G+ F ETS       +++ +GI  +
Sbjct: 139 EEKGLLFFETSAKTGENVNDVFLGIGEK 166

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 20/87 (22%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLE----------- 166
           D+F++ +SV+   +F+   +     W      +  +  +ILV  ++DL            
Sbjct: 93  DIFLLCFSVVSPSSFQNVSEK----WVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDK 148

Query: 167 -RRRQVTHSDGKKLAYAWG-VKFVETS 191
            + + V     K LA       ++E S
Sbjct: 149 CKEKPVPEEAAKLLAEEIKAASYIECS 175

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 18/85 (21%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVANKADLERRRQ------- 170
           DVF++ +S+I + +++     +   W      Y     ++LV  K DL   +Q       
Sbjct: 81  DVFILAFSLISKASYEN----VSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPG 136

Query: 171 ---VTHSDGKKLAYAWG-VKFVETS 191
              +T   G++L    G   ++E S
Sbjct: 137 AVPITTVQGEELKKLIGAPAYIECS 161

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
           E++  KK +  LK      Y  + A  L A KA +E
Sbjct: 18  EKQALKKLQASLK-----LYADDSAPAL-AIKATME 47

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 121 DVFVIVYSVIERKT-FKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---VTHSDG 176
            +++ VY + + +      +  L  +          VILV    D+   +Q         
Sbjct: 81  ALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVGTHLDVSDEKQRKACMSKIT 138

Query: 177 KKLAYAWGVKFV-----ETSVGLVYKTDELLVGIARQAGLNKKRNK 217
           K+L    G   +       +        +L   I  ++   K R++
Sbjct: 139 KELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRDQ 184

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 21/115 (18%)

Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
             DV +I +S++   +F+         W      +     +ILV  K DL          
Sbjct: 76  QTDVSLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKL 131

Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
             ++   +T+  G  +A   G VK++E S         +     R A L     K
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR-AVLCPPPVK 185

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 20/89 (22%)

Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
             D  +I + +   +T     D +   W     ++     ++LV  K+DL          
Sbjct: 78  DSDAVLICFDISRPETL----DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 133

Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETS 191
              R+  V++  G  +A   G   ++E S
Sbjct: 134 SNHRQTPVSYDQGANMAKQIGAATYIECS 162

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 20/87 (22%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQ------- 170
           DVF+I +SV+   +F+  ++     W     +Y      +L+  + DL    +       
Sbjct: 91  DVFLICFSVVNPASFQNVKEE----WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND 146

Query: 171 -----VTHSDGKKLAYAWG-VKFVETS 191
                +    G+KLA   G   +VE S
Sbjct: 147 MKEKPICVEQGQKLAKEIGACCYVECS 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.95
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.95
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.92
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.92
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.9
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.88
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.88
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.88
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.88
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.87
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.87
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.86
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.84
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.83
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.82
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.81
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.81
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.8
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.8
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.76
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.76
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.76
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.75
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.73
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.73
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.7
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.7
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.69
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.69
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.69
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.68
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.68
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.68
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.67
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.67
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.67
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.66
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.66
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.66
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.65
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.65
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.64
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.64
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.64
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.63
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.63
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.61
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.6
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.58
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.57
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.56
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.56
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.54
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.53
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.53
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.51
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.51
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.49
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.49
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.47
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.46
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.45
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.4
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.39
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.34
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.34
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.31
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.25
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.24
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.19
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.11
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.08
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.7
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.7
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.68
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.65
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.43
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.38
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.29
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.28
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.27
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.13
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.13
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.05
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.94
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.91
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.83
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.8
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.74
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.72
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.49
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.27
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.25
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.2
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.02
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.39
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.25
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.13
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.0
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.8
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.79
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.7
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.63
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.6
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.59
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.43
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.39
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.25
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.22
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.22
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.15
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.06
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.06
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.03
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.02
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.01
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.99
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.94
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.93
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.92
1g6h_A	257	High-affinity branched-chain amino acid transport	94.92
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.92
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.88
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.88
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.87
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.85
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.85
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.84
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.81
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.8
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.79
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.79
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.78
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.75
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.74
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.68
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.67
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.65
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.64
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.63
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.62
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.61
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.6
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.6
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.6
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.59
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.54
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.52
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.52
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.51
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.46
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.45
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.44
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.4
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.37
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.33
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.33
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.31
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.29
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.24
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.23
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.2
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.15
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.14
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.11
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.02
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.98
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.98
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.95
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.89
3fwy_A	314	Light-independent protochlorophyllide reductase I	93.88
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.86
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.86
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.85
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.79
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.77
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.76
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.76
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.76
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.71
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.68
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.67
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.66
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.64
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.63
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.61
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.56
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.55
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.54
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.52
1via_A	175	Shikimate kinase; structural genomics, transferase	93.5
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.5
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	93.49
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.49
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.46
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.41
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.39
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.36
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.32
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.32
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.32
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.32
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.3
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.3
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.25
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.23
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.23
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.2
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.17
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.16
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.14
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.08
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.05
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.02
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.01
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.99
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.98
3bos_A	242	Putative DNA replication factor; P-loop containing	92.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	92.96
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.89
2cvh_A	220	DNA repair and recombination protein RADB; filamen	92.88
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.85
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	92.83
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.81
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.74
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.72
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.67
2og2_A	359	Putative signal recognition particle receptor; nuc	92.59
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.58
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	92.56
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	92.55
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	92.5
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.48
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.47
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	92.46
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	92.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.36
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	92.33
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	92.32
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.3
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.3
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.27
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	92.22
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.16
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.13
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.05
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	92.01
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	92.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.88
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.87
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.8
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.71
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	91.67
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	91.6
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.6
3co5_A	143	Putative two-component system transcriptional RES	91.59
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.58
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.51
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	91.5
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.5
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.47
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.46
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.46
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	91.41
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.28
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.25
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.17
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	91.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.11
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.06
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	91.03
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.02
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	90.97
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.83
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	90.79
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	90.76
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	90.74
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	90.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	90.67
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	90.55
2fna_A	357	Conserved hypothetical protein; structural genomic	90.49
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.36
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.3
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	90.26
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.23
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	90.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	90.11
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	89.99
1tue_A	212	Replication protein E1; helicase, replication, E1E	89.98
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.96
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	89.92
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.89
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.85
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	89.84
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	89.83
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	89.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.59
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	89.56
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	89.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.55
3end_A	307	Light-independent protochlorophyllide reductase ir	89.53
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	89.48
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	89.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	89.26
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.18
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	89.04
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	89.0
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	88.96
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	88.95
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	88.93
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	88.93
2qgz_A	308	Helicase loader, putative primosome component; str	88.91
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	88.9
3uc9_A	233	Increased recombination centers protein 6; rossman	88.82
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	88.75
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	88.64
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	88.56
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	88.54
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	88.51

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2e-38  Score=261.25  Aligned_cols=153  Identities=22%  Similarity=0.335  Sum_probs=126.3

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      ++.+.+||+|+|++|||||||++ +|+.  +.|...+.+|++               .+++|||+|++  +.+++.|++ 
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~-r~~~--~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~-   84 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLIT-RFMY--DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR-   84 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHH-HHHH--SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT-
T ss_pred             CCCCcEEEEEECcCCcCHHHHHH-HHHh--CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc-
Confidence            34456789999999999999998 8987  566666666654               67799999997  677788888 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                               +++++++|||+++++||+.+..|+..+.+.. .+++|++|||||+|+.+.+.|+.+++.++++.++++|+|
T Consensus        85 ---------~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e  154 (216)
T 4dkx_A           85 ---------DSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE  154 (216)
T ss_dssp             ---------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             ---------cccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEE
Confidence                     9999999999999999999999999997653 468999999999999988999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |||++|.||+++|+.|++.+....
T Consensus       155 ~SAktg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          155 TSAKAGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             EBTTTTBSHHHHHHHHHHHC----
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhhh
Confidence            999999999999999998886543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=215.32  Aligned_cols=153  Identities=26%  Similarity=0.361  Sum_probs=128.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+|+|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..++.   
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---   84 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR---   84 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHH-HHHH--SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH---
T ss_pred             CCceEEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh---
Confidence            4456889999999999999998 7876  333333333321              57799999986  344455555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..+++.++++++++|
T Consensus        85 -------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (206)
T 2bov_A           85 -------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS  157 (206)
T ss_dssp             -------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred             -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence                   7999999999999999999999999998776556899999999999987778899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |++|.||+++|.+|++.+....
T Consensus       158 a~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          158 AKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=1.7e-30  Score=208.15  Aligned_cols=150  Identities=14%  Similarity=0.203  Sum_probs=125.5

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCccccCCCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQRCLTPMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~~~~~~~~~~~~~~~~  114 (250)
                      .-..+||+|+|++|||||||++ +|++  ..+...+.++..             .+.+|||+|+++..   +++      
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~------   84 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVH-RYLT--GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ---FAA------   84 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHH-HHHH--SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH---HHH------
T ss_pred             CCCeeEEEEECCCCCCHHHHHH-HHhc--CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh---eec------
Confidence            4567889999999999999998 7877  444333333322             56789999987433   556      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc--cCCCccCHHHHHHHHHHhC-CeEEEEe
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL--ERRRQVTHSDGKKLAYAWG-VKFVETS  191 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~evS  191 (250)
                          ++|++++|||++++.||+.+..|+..+.......++|++|||||+|+  ...+.++.+++.++++.++ ++|+++|
T Consensus        85 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           85 ----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence                79999999999999999999999999977644468999999999999  4567899999999999997 8999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |++|.||+++|.++++.+.+.+
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999887654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-30  Score=213.56  Aligned_cols=153  Identities=27%  Similarity=0.394  Sum_probs=124.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-----------EEEEEeCCCCcc---ccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-----------FIVYSDTNHTQR---CLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-----------~i~i~Dt~g~~~---~~~~~~~~~~~  111 (250)
                      ...+||+|+|++|||||||++ +|++....+.+   +.+.+..           .+.+|||+|++.   .+...+++   
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~-r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~---  110 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLAN-IFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ---  110 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHH-HHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC---
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh---
Confidence            355889999999999999998 88864332322   2232221           456899999863   44555666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             .+|++|+|||++++.||+.+..|+..+.+.....++|++|||||+|+.+.+.++.+++..++..++++|+|||
T Consensus       111 -------~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~S  183 (211)
T 2g3y_A          111 -------VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS  183 (211)
T ss_dssp             -------CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEe
Confidence                   8999999999999999999999998886543345799999999999987788999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |++|.||+++|+++++.+...
T Consensus       184 Ak~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          184 AAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999987543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=2.6e-30  Score=209.93  Aligned_cols=156  Identities=21%  Similarity=0.269  Sum_probs=128.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.++.           .+.+|||+|++  ..++..++.      
T Consensus         7 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   79 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLL-RFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR------   79 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHH-HHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT------
T ss_pred             cceEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc------
Confidence            45789999999999999998 787631  112233332221           67899999986  456666776      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus        80 ----~~d~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (206)
T 2bcg_Y           80 ----GSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD  154 (206)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence                899999999999999999999999998665 346799999999999987778889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      |.||+++|.++.+.+.+......
T Consensus       155 g~gi~~l~~~l~~~i~~~~~~~~  177 (206)
T 2bcg_Y          155 STNVEDAFLTMARQIKESMSQQN  177 (206)
T ss_dssp             CTTHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999887655443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=2.1e-30  Score=205.91  Aligned_cols=154  Identities=22%  Similarity=0.281  Sum_probs=127.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+++|++|||||||++ +|.+  ..+...+.++.+              .+.+|||+|++  ..++..+++    
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   76 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTI-QFVE--GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI----   76 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHH-HHHH--SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT----
T ss_pred             CceEEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh----
Confidence            356789999999999999998 7876  334444433332              56799999986  455666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++||
T Consensus        77 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  150 (181)
T 3t5g_A           77 ------DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA  150 (181)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence                  89999999999999999999999999977766678999999999999888899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++|.|++++|.++++.+......
T Consensus       151 ~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          151 KENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             TSHHHHHHHHHHHHHHHHTC---
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999988765543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=2.7e-30  Score=206.11  Aligned_cols=152  Identities=21%  Similarity=0.338  Sum_probs=126.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ ++.+  ..+...+.++..              .+.+|||+|++  ..++..++.     
T Consensus         3 ~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   74 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTI-QLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR-----   74 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHH-HHHH--SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHH-----
T ss_pred             cEEEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHh-----
Confidence            35789999999999999998 7876  334443333332              46789999986  444555565     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+ +.+..+++..+++.++++++++||+
T Consensus        75 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (189)
T 4dsu_A           75 -----TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAK  148 (189)
T ss_dssp             -----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCC
Confidence                 7999999999999999999999999998876667899999999999964 5678889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      +|.|++++|+++.+.+......
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999999988765433

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=4.1e-30  Score=201.12  Aligned_cols=151  Identities=26%  Similarity=0.349  Sum_probs=113.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      .+||+++|++|||||||++ ++.+... ...++.+.+..          .+.+|||+|++  ..++..++.         
T Consensus         2 ~~ki~~vG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---------   71 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMA---------   71 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHH-HHCCC----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHH-HHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhh---------
Confidence            3679999999999999998 7876421 11222222221          67799999986  556777777         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                       .+|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|
T Consensus        72 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  150 (166)
T 3q72_A           72 -MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN  150 (166)
T ss_dssp             --CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred             -hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence             8999999999999999999999999997765567899999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy5810         198 TDELLVGIARQAGLN  212 (250)
Q Consensus       198 I~~lf~~l~~~i~~~  212 (250)
                      ++++|+++++.+.+.
T Consensus       151 i~~l~~~l~~~~~~~  165 (166)
T 3q72_A          151 VQALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=2.7e-30  Score=205.60  Aligned_cols=151  Identities=26%  Similarity=0.368  Sum_probs=128.6

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+|+|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..+++   
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---   88 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTI-QFFQ--KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR---   88 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH---
T ss_pred             CCCceEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh---
Confidence            4567889999999999999998 7876  344444444332              46679999986  344455555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++|
T Consensus        89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  161 (183)
T 3kkq_A           89 -------TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS  161 (183)
T ss_dssp             -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred             -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence                   7999999999999999999999999998776678899999999999988889999999999999999999999


Q ss_pred             cC-CCCCHHHHHHHHHHHHHh
Q psy5810         192 VG-LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       192 a~-~~~~I~~lf~~l~~~i~~  211 (250)
                      |+ ++.|++++|+++.+.+.+
T Consensus       162 a~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          162 AKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CSSSCBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            99 999999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=209.54  Aligned_cols=154  Identities=25%  Similarity=0.338  Sum_probs=127.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+|+|++|||||||++ +|.+  ..+...+.++.+              .+.+|||+|++  ..++..+++    
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   94 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAH-QFVE--GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFII----   94 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTT----
T ss_pred             CCcEEEEEECCCCcCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHh----
Confidence            456889999999999999998 7887  444444444332              56799999986  556677777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..+++.++++|+++||
T Consensus        95 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  168 (201)
T 3oes_A           95 ------GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSA  168 (201)
T ss_dssp             ------TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             ------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeC
Confidence                  89999999999999999999999999977655678999999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++|.|++++|.+|++.+.+....
T Consensus       169 ~~~~~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          169 RENQLTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             TCHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Confidence            99999999999999988765444

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=3.5e-30  Score=204.10  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=121.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCce----------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDV----------FFIVYSDTNHTQRCLTPMPFCSQVENFV  115 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~  115 (250)
                      ...+||+++|++|||||||++ +|.++  .+.   ++.+...          ..+.+|||+|+++   ..+++       
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~-~l~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---~~~~~-------   71 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIH-RFLTG--SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---AKFSG-------   71 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHH-HHHHS--CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---HHHHH-------
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHHhC--CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---hHHHH-------
Confidence            356789999999999999998 78773  332   2222211          1577899999985   34555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCc--cCCCccCHHHHHHHHHHh-CCeEEEE
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADL--ERRRQVTHSDGKKLAYAW-GVKFVET  190 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~ev  190 (250)
                         ++|++|+|||+++++||+.+..|+..+.....  ..++|+++||||+|+  ...+.++.+++.++++.+ +++|+++
T Consensus        72 ---~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2iwr_A           72 ---WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYET  148 (178)
T ss_dssp             ---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEE
T ss_pred             ---hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEE
Confidence               79999999999999999999998766654432  357899999999999  356788999999999887 6889999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ||++|.|++++|+++++.+.+...
T Consensus       149 Sa~~~~~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          149 XATYGLNVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             eccccCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999998876543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=3.7e-30  Score=204.83  Aligned_cols=153  Identities=21%  Similarity=0.369  Sum_probs=106.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.++           ..+.+|||+|++  ..++..+++      
T Consensus         7 ~~~ki~v~G~~~~GKssl~~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   79 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLF-RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------   79 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT------
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh------
Confidence            35789999999999999998 787631  11222222211           257899999986  566777777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus        80 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  154 (183)
T 2fu5_C           80 ----GAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKA  154 (183)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred             ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCC
Confidence                899999999999999999999999998664 346799999999999987788899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |.||+++|.++++.+.+...
T Consensus       155 ~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          155 NINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            99999999999998876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=209.42  Aligned_cols=155  Identities=28%  Similarity=0.347  Sum_probs=124.6

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccccc--ccccCce-----------eEEEEEeCCCCcc---ccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--QTYHPDV-----------FFIVYSDTNHTQR---CLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~~~~~~~-----------~~i~i~Dt~g~~~---~~~~~~~~~~~  111 (250)
                      ....+||+|+|++|||||||++ +|.+....+.  ++.+.+.           ..+.+|||+|++.   .++..+++   
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~---   95 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAG-TFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ---   95 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHH-HTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH---
T ss_pred             CCcEEEEEEECCCCCCHHHHHH-HHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc---
Confidence            3456889999999999999998 7865322221  1111111           1577899999863   24445555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++|+|||++++.||+.+..|+.++.......++|+++||||+|+.+.+.++.+++.++++.++++|+|+|
T Consensus        96 -------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S  168 (195)
T 3cbq_A           96 -------TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS  168 (195)
T ss_dssp             -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred             -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence                   7999999999999999999999999987664446899999999999987788999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |++|.||+++|+++++.+...+
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999886543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=5e-30  Score=201.15  Aligned_cols=151  Identities=28%  Similarity=0.366  Sum_probs=120.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc--cccCc-----------eeEEEEEeCCCCcc---ccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--TYHPD-----------VFFIVYSDTNHTQR---CLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--~~~~~-----------~~~i~i~Dt~g~~~---~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|.+.......  +.+..           ...+.+|||+|++.   .++..++.      
T Consensus         2 ~~ki~ivG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~------   74 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAG-TFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQ------   74 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHH------
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhc------
Confidence            4789999999999999998 78653111111  11111           11677999999873   24555566      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++||++
T Consensus        75 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T 3q85_A           75 ----TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  150 (169)
T ss_dssp             ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             ----cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence                7999999999999999999999999998765556899999999999987788999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|+++++.+..+
T Consensus       151 ~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          151 HHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=206.46  Aligned_cols=152  Identities=24%  Similarity=0.292  Sum_probs=121.6

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcccc-CCCcccccc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQRCL-TPMPFCSQV  111 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~~~-~~~~~~~~~  111 (250)
                      +....+||+|+|++|||||||++ +|++  ..+...+.++++              .+.+|||+|+++.. ...+++   
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---   90 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTV-KFLT--KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLN---   90 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHH-HHHH--SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHT---
T ss_pred             CCCceEEEEEECCCCCcHHHHHH-HHHh--CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHh---
Confidence            45567889999999999999998 7877  334443333332              56789999987321 233444   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                             ++|++++|||++++++|+.+..|+..+.....  ..++|+++||||+|+.+.+.++.+++.++++.++++|++
T Consensus        91 -------~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  163 (187)
T 3c5c_A           91 -------WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFE  163 (187)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred             -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEE
Confidence                   89999999999999999999999999876532  258999999999999877889999999999999999999


Q ss_pred             Eec-CCCCCHHHHHHHHHHHHHh
Q psy5810         190 TSV-GLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       190 vSa-~~~~~I~~lf~~l~~~i~~  211 (250)
                      +|| ++|.||+++|+++++.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999987753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=199.89  Aligned_cols=152  Identities=29%  Similarity=0.415  Sum_probs=117.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCcc----ccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQR----CLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~----~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ +|.+... ...++.+.+..           .+.+|||+|++.    .+...+++     
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-----   76 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLAS-LFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQ-----   76 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHH-HHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTT-----
T ss_pred             eEEEEEEECCCCccHHHHHH-HHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcc-----
Confidence            35789999999999999998 7877411 11123333321           577999999863    22233444     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           .+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..++..++++++++||+
T Consensus        77 -----~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  151 (175)
T 2nzj_A           77 -----GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT  151 (175)
T ss_dssp             -----SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred             -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence                 799999999999999999999999988765445689999999999998778899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy5810         194 LVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|.||+++|++|++.+...
T Consensus       152 ~g~gi~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          152 LQHNVAELFEGVVRQLRLR  170 (175)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.9e-30  Score=206.90  Aligned_cols=152  Identities=24%  Similarity=0.321  Sum_probs=126.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc-ccCCCcccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR-CLTPMPFCSQVEN  113 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~-~~~~~~~~~~~~~  113 (250)
                      ...+||+|+|++|||||||++ +|.+  ..+...+.++.+              .+.+|||+|++. .++..++.     
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~-----   97 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVV-RFLT--KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMR-----   97 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHH-----
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhc-----
Confidence            345789999999999999998 7877  333333333221              578999999875 33444555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           .+|++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++||+
T Consensus        98 -----~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  172 (196)
T 2atv_A           98 -----WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC  172 (196)
T ss_dssp             -----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTT
T ss_pred             -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCC
Confidence                 799999999999999999999999999876666789999999999998778899999999999999999999999


Q ss_pred             CCC-CHHHHHHHHHHHHHhhh
Q psy5810         194 LVY-KTDELLVGIARQAGLNK  213 (250)
Q Consensus       194 ~~~-~I~~lf~~l~~~i~~~~  213 (250)
                      +|. |++++|++|++.+.+..
T Consensus       173 ~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          173 TGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHhhc
Confidence            999 99999999999887543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=1.5e-29  Score=203.99  Aligned_cols=152  Identities=27%  Similarity=0.416  Sum_probs=121.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-----------EEEEEeCCCCc---cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-----------FIVYSDTNHTQ---RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-----------~i~i~Dt~g~~---~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|++....+.+   +.+.+..           .+.+|||+|++   +.+...+++     
T Consensus         6 ~~kv~lvG~~~vGKSsL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~-----   79 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLAN-IFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ-----   79 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHH-----
T ss_pred             eEEEEEECCCCCCHHHHHH-HHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcc-----
Confidence            5789999999999999998 78753222222   2222221           45689999875   344455555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           .+|++++|||+++++||+.+..|+..+.......++|+++||||+|+...+.+..+++..++..++++|+|+||+
T Consensus        80 -----~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~  154 (192)
T 2cjw_A           80 -----VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAA  154 (192)
T ss_dssp             -----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccc
Confidence                 799999999999999999999999888665444679999999999997778888899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +|.||+++|.++++.+....
T Consensus       155 ~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          155 VQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=1.3e-29  Score=203.91  Aligned_cols=153  Identities=22%  Similarity=0.334  Sum_probs=126.4

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccc
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      ....+.+||+++|++|||||||++ +|.+  ..+...+.++++              .+.+|||+|++  ..++..+++ 
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-   93 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLL-AFSK--GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA-   93 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT-
T ss_pred             cccceeeEEEEECcCCCCHHHHHH-HHhc--CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc-
Confidence            345567889999999999999998 8887  444444444432              45799999986  456666777 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHHHHHHHHHHhCCe
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER--RRQVTHSDGKKLAYAWGVK  186 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~~~  186 (250)
                               ++|++++|||++++.+|+.+ ..|+..+...  ..++|+++|+||+|+.+  .+.+..+++.++++.+++.
T Consensus        94 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (194)
T 3reg_A           94 ---------DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV  162 (194)
T ss_dssp             ---------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred             ---------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence                     89999999999999999997 6798888654  46899999999999964  3778999999999999998


Q ss_pred             -EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         187 -FVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       187 -~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                       |+++||++|.||+++|+++++.+.+..
T Consensus       163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          163 AYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             EEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence             999999999999999999999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=198.02  Aligned_cols=151  Identities=23%  Similarity=0.298  Sum_probs=126.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ ++.+.  .+...+.++.               ..+.+|||+|++  ..++..++.    
T Consensus         8 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   80 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLL-RFADN--TFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR----   80 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHH-HHCSC--C---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT----
T ss_pred             cceEEEEECCCCCCHHHHHH-HHhcC--CCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc----
Confidence            55789999999999999998 88873  3322222222               157899999986  455666676    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+...  ..++|+++|+||+|+.+.+.+..+++..++...+++++++||
T Consensus        81 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (181)
T 3tw8_B           81 ------GTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA  152 (181)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEEC
Confidence                  899999999999999999999999999664  368999999999999888888999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++|.|++++|+++.+.+.+....
T Consensus       153 ~~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          153 KENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999988765443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=8.8e-30  Score=208.82  Aligned_cols=152  Identities=15%  Similarity=0.239  Sum_probs=125.9

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+|+|++|||||||++ +|.+  ..+...+.++++              .+.+|||+|++  ..++..+++    
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----   97 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQ-VLAK--DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS----   97 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred             cceEEEEEECcCCCCHHHHHH-HHhc--CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC----
Confidence            456789999999999999998 7887  444444444432              57799999987  566677777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~  179 (250)
                            ++|++|+|||++++++|+. +..|+..+...  ..++|++|||||+|+.++            +.++.+++.++
T Consensus        98 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (214)
T 3q3j_B           98 ------DSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI  169 (214)
T ss_dssp             ------TCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             ------CCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence                  8999999999999999999 68999999765  368999999999999653            77999999999


Q ss_pred             HHHhCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhhhh
Q psy5810         180 AYAWGV-KFVETSVGLVYK-TDELLVGIARQAGLNKKR  215 (250)
Q Consensus       180 ~~~~~~-~~~evSa~~~~~-I~~lf~~l~~~i~~~~~~  215 (250)
                      ++.+++ +|+||||++|.| |+++|.++++.+......
T Consensus       170 ~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          170 AKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             HHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            999999 899999999998 999999999988765443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-29  Score=206.11  Aligned_cols=151  Identities=17%  Similarity=0.265  Sum_probs=126.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ...+||+|+|++|||||||++ +|.+  ..+...+.+++               ..+.+|||+|++  ..++..+++   
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---   97 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVR-RFTQ--GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR---   97 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHH-HHHH--SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST---
T ss_pred             ccceEEEEECcCCCCHHHHHH-HHHh--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh---
Confidence            345789999999999999998 7877  33333333332               157899999986  445566666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++|+++|
T Consensus        98 -------~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  169 (201)
T 2ew1_A           98 -------SANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS  169 (201)
T ss_dssp             -------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred             -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence                   899999999999999999999999998664 346789999999999987788899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |++|.||+++|.++++.+.+..
T Consensus       170 a~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          170 AKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=2.7e-29  Score=201.72  Aligned_cols=154  Identities=23%  Similarity=0.301  Sum_probs=125.5

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ....+||+|+|++|||||||++ +|.+..  ....++.+.+..           .+.+|||+|++  ..++..++.    
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   92 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLL-QFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR----   92 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHH-HHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT----
T ss_pred             cCcceEEEEECcCCCCHHHHHH-HHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc----
Confidence            3456889999999999999998 787631  112223332221           67899999986  445556666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||
T Consensus        93 ------~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  165 (191)
T 2a5j_A           93 ------GAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSA  165 (191)
T ss_dssp             ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999998664 3468999999999999877788999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.||+++|++|++.+.++.
T Consensus       166 ~~~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          166 KTACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999887643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=8.7e-30  Score=199.05  Aligned_cols=147  Identities=27%  Similarity=0.432  Sum_probs=123.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++.+  ..+...+.++.+              .+.+|||+|++  ..++..++.      
T Consensus         3 ~~ki~v~G~~~~GKssli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------   73 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMK------   73 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHH------
T ss_pred             eeEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhc------
Confidence            5789999999999999998 7877  333333333322              57899999986  344445555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVG  193 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~  193 (250)
                          ++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..+++.+ +++++++||+
T Consensus        74 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (167)
T 1c1y_A           74 ----NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK  149 (167)
T ss_dssp             ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence                79999999999999999999999999987766678999999999999877888899999999988 7899999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.|++++|+++.+.+.
T Consensus       150 ~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          150 SKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=7.4e-30  Score=207.09  Aligned_cols=151  Identities=17%  Similarity=0.255  Sum_probs=123.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ...+||+|+|++|||||||++ +|.+  ..+...+.++    +           ..+.+|||+|++  ..++..+++   
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---  100 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQ-RFKT--GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR---  100 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHH-HHHH--SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT---
T ss_pred             ccceEEEEECcCCCCHHHHHH-HHhh--CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh---
Confidence            345789999999999999998 7876  3333333222    2           167799999986  344555666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEE
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVET  190 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ev  190 (250)
                             ++|++|+|||++++.+|+.+..|+..+.+. ...++|++||+||+|+.+.+.++.+++.++++.+++ +++++
T Consensus       101 -------~~d~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (201)
T 2hup_A          101 -------SANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIET  172 (201)
T ss_dssp             -------TCSEEEEEEETTBHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEEC
T ss_pred             -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEE
Confidence                   899999999999999999999999998765 346799999999999987788999999999999999 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ||++|.||+++|++|++.+.+..
T Consensus       173 SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          173 SAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999887543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=1.7e-29  Score=199.92  Aligned_cols=153  Identities=23%  Similarity=0.331  Sum_probs=127.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+++|++|||||||++ +|.+.  .+...+.++.+              .+.+|||+|++  ..++..++.    
T Consensus         7 ~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----   79 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTI-QFIQS--YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR----   79 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHH-HHHHS--SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH----
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHHhC--cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh----
Confidence            356789999999999999998 78773  33333333321              57789999986  334444555    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..++...+++++++||
T Consensus        80 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  153 (181)
T 2fn4_A           80 ------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  153 (181)
T ss_dssp             ------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             ------hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence                  79999999999999999999999999976666678999999999999877888899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++|.|++++|++|.+.+.+...
T Consensus       154 ~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999998875543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=1.5e-29  Score=199.86  Aligned_cols=151  Identities=22%  Similarity=0.273  Sum_probs=123.3

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ...+||+|+|++|||||||++ ++.+..  ....++.+.+..           .+.+|||+|++  ..++..++.     
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----   86 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLH-QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR-----   86 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHH-HHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHH-----
T ss_pred             ccceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhc-----
Confidence            456889999999999999998 787631  112233332221           57899999986  344445555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||+
T Consensus        87 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (179)
T 1z0f_A           87 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK  160 (179)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----cCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence                 899999999999999999999999988665 34689999999999998777888999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.|++++|+++++.+.+
T Consensus       161 ~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          161 TGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TCTTHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=2.3e-29  Score=199.56  Aligned_cols=155  Identities=23%  Similarity=0.259  Sum_probs=124.6

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      .....+||+++|++|||||||++ ++.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.   
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---   83 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVL-RFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---   83 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHH-HHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHT---
T ss_pred             CCccceEEEEECcCCCCHHHHHH-HHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhc---
Confidence            34556889999999999999998 787631  11123333222           167899999986  455555666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus        84 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  155 (181)
T 2efe_B           84 -------GAAAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETS  155 (181)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEE
Confidence                   899999999999999999999999998765 346899999999999987788889999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |++|.|++++|++|++.+.+..
T Consensus       156 a~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          156 AKTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SSSCTTHHHHHHHHHHTCC---
T ss_pred             CCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999998776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=1.3e-29  Score=201.60  Aligned_cols=153  Identities=26%  Similarity=0.361  Sum_probs=127.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+|+|++|||||||++ ++.+  ..+...+.++..              .+.+|||+|++  ..++..++.   
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---   88 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR---   88 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHH-HHHH--SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH---
T ss_pred             CCCceEEEEECCCCCCHHHHHH-HHhh--CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhc---
Confidence            4567889999999999999998 7876  333333333321              57799999986  344455555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             .+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus        89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (187)
T 2a9k_A           89 -------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS  161 (187)
T ss_dssp             -------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             -------cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence                   7999999999999999999999999998876666899999999999987778889999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      |+++.|++++|++|.+.+.+.+
T Consensus       162 a~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          162 AKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=3.2e-29  Score=196.52  Aligned_cols=150  Identities=19%  Similarity=0.309  Sum_probs=121.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+++|++|||||||++ ++.+..  ....++.+.+..           .+.+|||+|++  ..++..++.      
T Consensus         5 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------   77 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVL-RYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR------   77 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHH-HHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST------
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc------
Confidence            45789999999999999998 787631  122233332221           57899999986  566677777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++.++++..+++++++||++
T Consensus        78 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1z08_A           78 ----DSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ  152 (170)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence                8999999999999999999999999886542 35789999999999987788899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.|++++|+++++.+.+
T Consensus       153 ~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          153 NKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=2.9e-29  Score=201.55  Aligned_cols=154  Identities=19%  Similarity=0.312  Sum_probs=126.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+...+.++.               ..+.+|||+|++  ..++..++.    
T Consensus        15 ~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   87 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLL-RFADD--TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR----   87 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHHS--CCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT----
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh----
Confidence            45789999999999999998 78773  3332222221               157899999986  444455666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.+++..++++++++||
T Consensus        88 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (196)
T 3tkl_A           88 ------GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA  160 (196)
T ss_dssp             ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred             ------hCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence                  899999999999999999999999998665 3468999999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      ++|.|++++|.+|++.+.+......
T Consensus       161 ~~g~gv~~l~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          161 KNATNVEQSFMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHC----
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999887655443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.7e-29  Score=206.86  Aligned_cols=153  Identities=20%  Similarity=0.208  Sum_probs=122.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+.    ++.+.+.           ..+.+|||+|++  ..++..+++    
T Consensus        12 ~~~ki~v~G~~~vGKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   84 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLS-RFTKN--EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR----   84 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHH-HHHHC--CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT----
T ss_pred             eeeEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc----
Confidence            45789999999999999998 78773  332    2222222           167899999986  456666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+.+.++.+++..+++..+++|+++||
T Consensus        85 ------~~d~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  157 (223)
T 3cpj_B           85 ------GAVGALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA  157 (223)
T ss_dssp             ------TCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCC
T ss_pred             ------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999998664 3467899999999999877788999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      ++|.||+++|++|++.+.+.....
T Consensus       158 ~~~~gi~~l~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          158 LNSENVDKAFEELINTIYQKVSKH  181 (223)
T ss_dssp             C-CCCHHHHHHHHHHHHTTCC---
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999988755443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=1.6e-29  Score=206.09  Aligned_cols=151  Identities=20%  Similarity=0.354  Sum_probs=121.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ +|.+.  .+...+.++++              .+.+|||+|++  ..++..++.     
T Consensus         8 ~~~ki~i~G~~~~GKTsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   79 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLI-CYTSN--KFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYR-----   79 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHH-HHHHS--CCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGT-----
T ss_pred             ceEEEEEECCCCCCHHHHHH-HHhcC--CCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcc-----
Confidence            56889999999999999998 78763  33333332221              67899999986  566677777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--------cCHHHHHHHHHHhC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ--------VTHSDGKKLAYAWG  184 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------v~~~~~~~~~~~~~  184 (250)
                           ++|++|+|||++++++|+.+. .|+..+....  +++|++||+||+|+.+.+.        ++.+++.++++.++
T Consensus        80 -----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (212)
T 2j0v_A           80 -----GADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG  152 (212)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence                 899999999999999999997 7999886652  4899999999999965443        47889999999999


Q ss_pred             C-eEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         185 V-KFVETSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      + +|+++||++|.||+++|+++++.+.+....
T Consensus       153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          153 AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             CceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence            6 899999999999999999999988765443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=1.6e-29  Score=197.36  Aligned_cols=148  Identities=26%  Similarity=0.359  Sum_probs=123.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++.+.  .+...+.++..              .+.+|||+|++  ..++..++.      
T Consensus         4 ~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------   74 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTL-QFMYD--EFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR------   74 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHHS--CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHH------
T ss_pred             eEEEEEECCCCCCHHHHHH-HHHhC--ccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhh------
Confidence            5789999999999999998 78763  33333333221              57799999986  344455555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus        75 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (168)
T 1u8z_A           75 ----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT  150 (168)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCC
Confidence                7999999999999999999999999998876666899999999999987778899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.|++++|+++++.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=7.7e-29  Score=198.62  Aligned_cols=151  Identities=21%  Similarity=0.276  Sum_probs=125.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.++.           .+.+|||+|++  ..++..++.      
T Consensus        21 ~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   93 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLF-RYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR------   93 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT------
T ss_pred             ceeEEEEECCCCCCHHHHHH-HHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc------
Confidence            45789999999999999998 787731  122333333221           67899999986  455556666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.++++.++++++++||++
T Consensus        94 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  168 (189)
T 2gf9_A           94 ----GAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE  168 (189)
T ss_dssp             ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence                899999999999999999999999998664 346899999999999987788888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|++|++.+.++
T Consensus       169 g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          169 NINVKQVFERLVDVICEK  186 (189)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.96  E-value=1.6e-29  Score=199.91  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=122.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +.+||+|+|++|||||||++ +|.+..  ....++.+.+.            ..+.+|||+|++  ..++..+++     
T Consensus         5 ~~~ki~v~G~~~~GKssl~~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~-----   78 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTT-CFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIY-----   78 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHH-HHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHT-----
T ss_pred             ceEEEEEECcCCCCHHHHHH-HHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHh-----
Confidence            45789999999999999998 787731  11223333222            267899999987  344455566     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCc-EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKA-VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                           ++|++++|||++++.+|+.+..|+..+..... ..+.| +++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus        79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
T 2hxs_A           79 -----GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS  153 (178)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred             -----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence                 89999999999999999999999998866421 12445 899999999987778889999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |++|.||+++|++|++.+.+.
T Consensus       154 a~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          154 AKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTTCTTHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9.4e-29  Score=198.74  Aligned_cols=148  Identities=21%  Similarity=0.338  Sum_probs=122.7

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+++|++|||||||++ +|.+.  .+...+.++.              ..+.+|||+|++  ..++..+++   
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---   88 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLM-SYAND--AFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP---   88 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHH-HHHHS--SCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT---
T ss_pred             CCceEEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcC---
Confidence            3466889999999999999998 78773  3333333332              157889999986  455666666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHH
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKK  178 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~  178 (250)
                             ++|++++|||++++++|+.+. .|+..+.+.  ..++|+++|+||+|+.+.            +.++.+++.+
T Consensus        89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  159 (194)
T 2atx_A           89 -------MTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK  159 (194)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred             -------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence                   899999999999999999997 799988764  258999999999999653            5788999999


Q ss_pred             HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +++.+++ +|+++||++|.||+++|+++++.+.
T Consensus       160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999998 8999999999999999999998775

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=4.8e-29  Score=198.68  Aligned_cols=152  Identities=22%  Similarity=0.267  Sum_probs=125.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+...+.++.               ..+.+|||+|++  ..++..++.    
T Consensus         9 ~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   81 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLH-QFIEK--KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR----   81 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHH-HHHHS--SCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST----
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh----
Confidence            45789999999999999998 78763  3332222221               167799999986  444556666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++++++||
T Consensus        82 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (186)
T 2bme_A           82 ------GAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA  154 (186)
T ss_dssp             ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence                  899999999999999999999999988654 3468999999999999877788899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      ++|.|++++|+++++.+.+....
T Consensus       155 ~~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          155 LTGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999988765443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=7.1e-30  Score=205.12  Aligned_cols=153  Identities=19%  Similarity=0.245  Sum_probs=127.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.+..           .+.+|||+|++  ..++..+++      
T Consensus        22 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   94 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLF-RYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR------   94 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHH-HHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT------
T ss_pred             eeeEEEEECCCCcCHHHHHH-HHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc------
Confidence            45789999999999999998 787731  222233333322           57899999976  445556666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..+++.++++++++||++
T Consensus        95 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (191)
T 3dz8_A           95 ----GAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKE  169 (191)
T ss_dssp             ----TCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence                899999999999999999999999999664 456899999999999988888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |.||+++|+++++.+.++..
T Consensus       170 ~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          170 NISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             TBSHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHhcc
Confidence            99999999999998876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1e-28  Score=195.56  Aligned_cols=151  Identities=23%  Similarity=0.343  Sum_probs=121.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc---cccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ +|.+...   ...++.+.++.           .+.+|||+|++  ..++..++.     
T Consensus         9 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~-----   82 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLV-RFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR-----   82 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG-----
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc-----
Confidence            45789999999999999998 7776311   22233333221           67899999986  455666777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++.++++.++++++++||+
T Consensus        83 -----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  156 (180)
T 2g6b_A           83 -----DAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK  156 (180)
T ss_dssp             -----GCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence                 8999999999999999999999999987653 3689999999999998778888999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy5810         194 LVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|.|++++|+++.+.+.+.
T Consensus       157 ~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          157 TGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999887654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=4.1e-29  Score=195.40  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=123.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+++|++|||||||++ ++.+.  .+...+.++    .           ..+.+|||+|++  ..++..++.    
T Consensus         4 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   76 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQ-RYCKG--IFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR----   76 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHH-HHHHC--CCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT----
T ss_pred             eeEEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc----
Confidence            45789999999999999998 78773  333332222    2           167899999986  455555666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+....  .+.|+++|+||+|+.+.+.++.+++.++++.++++++++||
T Consensus        77 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T 1z2a_A           77 ------GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV  148 (168)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred             ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence                  8999999999999999999999999997654  68999999999999877788899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy5810         193 GLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~  211 (250)
                      +++.|++++|+++.+.+.+
T Consensus       149 ~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          149 KEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTTBSSHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=2.8e-29  Score=196.46  Aligned_cols=148  Identities=21%  Similarity=0.314  Sum_probs=121.7

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      .+.+||+++|++|||||||++ ++.+.  .+.    ++.+.+.           ..+.+|||+|++  ..++..++.   
T Consensus         4 ~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---   77 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVL-RFVKG--QFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR---   77 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHH-HHHHS--CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT---
T ss_pred             CceEEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc---
Confidence            356789999999999999998 78763  322    2222222           157899999986  334444555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++++|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++..+++++++|
T Consensus        78 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (170)
T 1r2q_A           78 -------GAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS  149 (170)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             -------CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence                   899999999999999999999999998765 346899999999999987778888999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~  210 (250)
                      |++|.|++++|++|++.+.
T Consensus       150 a~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          150 AKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTTCTTHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=2.1e-29  Score=196.41  Aligned_cols=147  Identities=30%  Similarity=0.475  Sum_probs=123.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++.+  ..+...+.++..              .+.+|||+|++  ..++..++.      
T Consensus         3 ~~~i~v~G~~~~GKSsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------   73 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTV-QFVT--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK------   73 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH------
T ss_pred             EEEEEEECCCCCCHHHHHH-HHHc--CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhc------
Confidence            4789999999999999998 7876  333333333321              47899999976  344445555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++
T Consensus        74 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  149 (167)
T 1kao_A           74 ----NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS  149 (167)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTC
T ss_pred             ----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCC
Confidence                7999999999999999999999999998776567899999999999987788889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~  210 (250)
                      |.|++++|+++++.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.96  E-value=5.8e-29  Score=201.54  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=123.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+..    +.+.+.           ..+.+|||+|++  ..++..++.    
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~----   96 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLH-QFIEN--KFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR----   96 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHH-HHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT----
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHhC--CCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc----
Confidence            45789999999999999998 78773  3322    222221           267899999986  455566666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++++++||
T Consensus        97 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA  169 (200)
T 2o52_A           97 ------GAAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA  169 (200)
T ss_dssp             ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred             ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999998664 3368999999999999877788889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.||+++|.+|++.+.+..
T Consensus       170 ~~g~gi~~l~~~l~~~i~~~~  190 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILNKI  190 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999887644

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=8.3e-29  Score=194.00  Aligned_cols=147  Identities=24%  Similarity=0.318  Sum_probs=122.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      +.+||+++|++|||||||++ ++.+.  .+..    +.+.+.           ..+.+|||+|++  ..++..++.    
T Consensus         5 ~~~~i~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----   77 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMW-RFVED--SFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR----   77 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHH-HHHHS--CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT----
T ss_pred             cceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc----
Confidence            45789999999999999998 78773  3332    222222           157799999986  445555566    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.+|+.+..|+..+... ..+.+|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus        78 ------~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  150 (170)
T 1z0j_A           78 ------GSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  150 (170)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999998664 4578999999999999877788899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQAG  210 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~  210 (250)
                      ++|.|++++|+++.+.+.
T Consensus       151 ~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          151 KNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.96  E-value=5.3e-29  Score=198.87  Aligned_cols=148  Identities=18%  Similarity=0.277  Sum_probs=121.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+++|++|||||||++ +|.+  ..+...+.++.+              .+.+|||+|++  ..++..++.    
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   77 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP----   77 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred             ceEEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC----
Confidence            456789999999999999998 7877  344333333322              57899999986  455566666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~  179 (250)
                            ++|++++|||++++++|+.+ ..|+..+.+.  .+++|+++||||+|+.+            .+.++.+++.++
T Consensus        78 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  149 (184)
T 1m7b_A           78 ------DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM  149 (184)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             ------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence                  89999999999999999999 7899888654  35899999999999964            267889999999


Q ss_pred             HHHhC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy5810         180 AYAWG-VKFVETSVG-LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       180 ~~~~~-~~~~evSa~-~~~~I~~lf~~l~~~i~~  211 (250)
                      ++.++ ++|+++||+ ++.||+++|+++++.+.+
T Consensus       150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          150 AKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            99988 689999999 689999999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=8.1e-29  Score=200.51  Aligned_cols=153  Identities=18%  Similarity=0.254  Sum_probs=126.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.      
T Consensus         7 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   79 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLF-RYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR------   79 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG------
T ss_pred             eeeEEEEECCCCCCHHHHHH-HHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc------
Confidence            35789999999999999998 788732  12223333222           167899999986  345556666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus        80 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
T 1zbd_A           80 ----GAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD  154 (203)
T ss_dssp             ----GCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCC
Confidence                899999999999999999999999998664 346789999999999987788899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |.|++++|++|.+.+.++..
T Consensus       155 ~~gi~~l~~~l~~~i~~~~~  174 (203)
T 1zbd_A          155 NINVKQTFERLVDVICEKMS  174 (203)
T ss_dssp             TBSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.2e-29  Score=200.89  Aligned_cols=151  Identities=25%  Similarity=0.296  Sum_probs=124.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +.+||+|+|++|||||||++ +|.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.      
T Consensus        22 ~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   94 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVC-RFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR------   94 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHH-HHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT------
T ss_pred             CceEEEEECcCCCCHHHHHH-HHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc------
Confidence            46889999999999999998 787631  12223333222           167899999986  455556666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus        95 ----~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  169 (192)
T 2fg5_A           95 ----GSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN  169 (192)
T ss_dssp             ----TCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTT
T ss_pred             ----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence                899999999999999999999999998665 346899999999999987778889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.||+++|++|.+.+.+.
T Consensus       170 ~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          170 AINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TBSHHHHHHHHHHTCC--
T ss_pred             CcCHHHHHHHHHHHHHhh
Confidence            999999999999877543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=1.1e-28  Score=193.36  Aligned_cols=149  Identities=23%  Similarity=0.363  Sum_probs=120.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .+||+++|++|||||||++ ++.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.       
T Consensus         3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-------   74 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLV-RFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYR-------   74 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHT-------
T ss_pred             ceEEEEECcCCCCHHHHHH-HHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhc-------
Confidence            4789999999999999998 787631  12223333222           157899999986  444555566       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++++.+|+.+..|+..+.+. ...+.|+++|+||+|+ ..+.+..+++.++++.++++++++||++|
T Consensus        75 ---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  149 (170)
T 1g16_A           75 ---GAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKND  149 (170)
T ss_dssp             ---TEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCC
Confidence               899999999999999999999999998765 3468899999999999 44678888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy5810         196 YKTDELLVGIARQAGLN  212 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~  212 (250)
                      .|++++|.++.+.+.++
T Consensus       150 ~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          150 DNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999988654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=4.2e-29  Score=200.14  Aligned_cols=151  Identities=23%  Similarity=0.269  Sum_probs=122.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCcc---ccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQR---CLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~~---~~~~~~~~~~~~  112 (250)
                      .+.+||+|+|++|||||||++ +|.+..  ....++.+.+.           ..+.+|||+|+++   .++..+++    
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~----   92 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTY-RFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR----   92 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHH-HHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT----
T ss_pred             CceEEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc----
Confidence            356889999999999999998 787631  11222333222           1678999999873   44555666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++..+++.++++++++||
T Consensus        93 ------~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  166 (189)
T 1z06_A           93 ------NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA  166 (189)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCS
T ss_pred             ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeC
Confidence                  89999999999999999999999999987755678999999999999877788999999999999999999999


Q ss_pred             CCC---CCHHHHHHHHHHHHH
Q psy5810         193 GLV---YKTDELLVGIARQAG  210 (250)
Q Consensus       193 ~~~---~~I~~lf~~l~~~i~  210 (250)
                      +++   .||.++|.+|++.+.
T Consensus       167 ~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          167 KNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSGGGGSCHHHHHHHHC----
T ss_pred             CcCCcccCHHHHHHHHHHHHh
Confidence            999   999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=9.4e-29  Score=197.67  Aligned_cols=154  Identities=19%  Similarity=0.276  Sum_probs=126.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCc---------------------eeEEEEEeCCCCc--cccC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPD---------------------VFFIVYSDTNHTQ--RCLT  103 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~---------------------~~~i~i~Dt~g~~--~~~~  103 (250)
                      ...+||+|+|++|||||||++ +|.+..  ....++.+.+                     ...+.+|||+|++  ..++
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLY-QYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHH-HHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHH-HHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            346789999999999999998 787631  1122222221                     1267899999986  3444


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW  183 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~  183 (250)
                      ..++.          ++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+++.++++.+
T Consensus        88 ~~~~~----------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  157 (195)
T 3bc1_A           88 TAFFR----------DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY  157 (195)
T ss_dssp             HHTTT----------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred             HHHHc----------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence            55555          89999999999999999999999999977655468999999999999877788899999999999


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +++++++||++|.|++++|++|.+.+.+..
T Consensus       158 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          158 GIPYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=198.02  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=123.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+...+.++    .           ..+.+|||+|++  ..++..++.    
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   96 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLS-RFTRN--EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR----   96 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHH-HHHHS--CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT----
T ss_pred             cceEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc----
Confidence            45789999999999999998 78773  333222222    1           156799999986  334444555    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus        97 ------~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  169 (193)
T 2oil_A           97 ------GAVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA  169 (193)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred             ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999999998654 3467899999999999877788889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.|++++|++|++.+.++.
T Consensus       170 ~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999887543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.1e-28  Score=197.85  Aligned_cols=153  Identities=21%  Similarity=0.257  Sum_probs=125.5

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      ....+||+|+|++|||||||++ +|.+.  .+...+.++.               ..+.+|||+|++  ..++..+++  
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--   86 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLL-RFTDD--TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR--   86 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHH-HHHHS--CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT--
T ss_pred             CCCceEEEEECCCCCCHHHHHH-HHHcC--CCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc--
Confidence            3456889999999999999998 78773  3332222221               157899999986  344455555  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                              ++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+. .+.+..+++.++++.++++++++
T Consensus        87 --------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~  157 (195)
T 1x3s_A           87 --------GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEA  157 (195)
T ss_dssp             --------TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             --------cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEe
Confidence                    899999999999999999999999999765445689999999999994 46788889999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ||+++.||+++|++|.+.+.+...
T Consensus       158 Sa~~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          158 SAKTCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred             cCCCCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999998876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=197.36  Aligned_cols=151  Identities=18%  Similarity=0.280  Sum_probs=119.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+++|++|||||||++ +|.+.  .+...+.+++.              .+.+|||+|++  ..++..++.   
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---   90 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVV-SYTTN--GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT---   90 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHH-HHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT---
T ss_pred             CCcceEEEEECCCCCCHHHHHH-HHHhC--CCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC---
Confidence            3456789999999999999998 78873  34443333321              46699999986  455566666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHH
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKK  178 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~  178 (250)
                             ++|++|+|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+            .+.++.+++..
T Consensus        91 -------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  161 (201)
T 2q3h_A           91 -------NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL  161 (201)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             -------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence                   899999999999999999997 7999886642  5899999999999864            36788899999


Q ss_pred             HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +++.++. +|+++||++|.||+++|+++++.+.+..
T Consensus       162 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             HHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            9999997 8999999999999999999999887543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=6.7e-29  Score=194.32  Aligned_cols=148  Identities=24%  Similarity=0.323  Sum_probs=119.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .+||+++|++|||||||++ ++.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.       
T Consensus         3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-------   74 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVL-RFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYR-------   74 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT-------
T ss_pred             eEEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhc-------
Confidence            5789999999999999998 787631  11222222221           167899999986  344445555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC---CccCHHHHHHHHHHhCCeEEEEec
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR---RQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                         ++|++++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...   +.+..+++.++++.++++++++||
T Consensus        75 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  150 (170)
T 1ek0_A           75 ---NAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSA  150 (170)
T ss_dssp             ---TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             ---cCcEEEEEEecCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence               899999999999999999999999998765 3468999999999998654   678889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQAG  210 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~  210 (250)
                      ++|.|++++|+++.+.+.
T Consensus       151 ~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          151 KTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TTCTTHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999987653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.96  E-value=3.5e-28  Score=192.45  Aligned_cols=153  Identities=19%  Similarity=0.215  Sum_probs=116.3

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCc------------eeEEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPD------------VFFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~------------~~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+++|++|||||||++ ++.+..  ....++.+.+            ...+.+|||+|++  ..++..++.    
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   80 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMH-RYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR----   80 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHH-HHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST----
T ss_pred             CceEEEEEECCCCCCHHHHHH-HHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh----
Confidence            356789999999999999998 787631  1122222211            1267899999986  556667777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCcc-CCCccCHHHHHHHHH-HhCCeE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLE-RRRQVTHSDGKKLAY-AWGVKF  187 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~-~~~~~~  187 (250)
                            ++|++|+|||++++.+|+.+..|+..+.....   ..++|+++|+||+|+. ..+.++.+++.++++ ..++++
T Consensus        81 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~  154 (182)
T 1ky3_A           81 ------GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL  154 (182)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred             ------cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence                  89999999999999999999999999876543   2678999999999994 456688889999998 457889


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +++||++|.||+++|+++.+.+.+.
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          155 FLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=2.3e-28  Score=193.03  Aligned_cols=152  Identities=15%  Similarity=0.178  Sum_probs=121.3

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ....+||+++|++|||||||++ ++.+..  ....++.+.+.           ..+.+|||+|++  ..++..++.    
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----   78 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMN-RYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR----   78 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHH-HHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT----
T ss_pred             ccceeEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHh----
Confidence            4456789999999999999998 787631  11222322221           167899999986  445556666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC---CCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI---GEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFV  188 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~  188 (250)
                            ++|++++|||++++.+|+.+..|+..+......   .++|+++|+||+|+. .+.++.+++.++++ ..+++++
T Consensus        79 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~  151 (177)
T 1wms_A           79 ------GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYF  151 (177)
T ss_dssp             ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEE
T ss_pred             ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEE
Confidence                  899999999999999999999999998765432   678999999999997 46788899999998 5678899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++||++|.|++++|+++++.+.+
T Consensus       152 ~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          152 ETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999998865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=2.9e-28  Score=197.51  Aligned_cols=152  Identities=20%  Similarity=0.280  Sum_probs=123.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ...+||+|+|++|||||||++ +|.+.  .+...+.+++               ..+.+|||+|++  ..++..++.   
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---   79 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMN-QYVNK--KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR---   79 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHH-HHHHS--CCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT---
T ss_pred             CcceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh---
Confidence            356789999999999999998 78773  3332222222               167899999986  455666676   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC---CCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeE
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI---GEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKF  187 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~  187 (250)
                             ++|++|+|||++++.+|+.+..|+..+......   .++|+++|+||+|+. .+.+..+++..++. ..++++
T Consensus        80 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~  151 (207)
T 1vg8_A           80 -------GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPY  151 (207)
T ss_dssp             -------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCE
T ss_pred             -------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceE
Confidence                   899999999999999999999999988765432   478999999999997 46678888888887 667899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +++||++|.|++++|++|++.+.+...
T Consensus       152 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          152 FETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999876544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.96  E-value=5.8e-28  Score=193.34  Aligned_cols=151  Identities=20%  Similarity=0.307  Sum_probs=120.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+++|++|||||||++ ++.+.  .+...+.++..              .+.+|||+|++  ..++..++.    
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----   91 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTI-QLIQN--HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR----   91 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHH-HHHHS--SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CT----
T ss_pred             cceeEEEEECcCCCCHHHHHH-HHHcC--CCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhC----
Confidence            356789999999999999998 78763  33333322221              47899999986  556666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            .+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++.++++.++++++++||
T Consensus        92 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa  164 (190)
T 3con_A           92 ------TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSA  164 (190)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeC
Confidence                  8999999999999999999999999987766556899999999999866 667889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.|++++|++|++.+.+.+
T Consensus       165 ~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          165 KTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999887543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=1.5e-28  Score=200.30  Aligned_cols=148  Identities=18%  Similarity=0.277  Sum_probs=121.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      ...+||+|+|++|||||||++ +|.+  ..+...+.++++              .+.+|||+|++  ..++..+++    
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----   98 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP----   98 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred             ceeeEEEEECCCCCCHHHHHH-HHhc--CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc----
Confidence            356889999999999999998 7877  344333333322              57899999986  455566666    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~  179 (250)
                            ++|++|+|||++++.+|+.+ ..|+..+.+.  ..++|+++||||+|+.+            .+.++.+++.++
T Consensus        99 ------~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  170 (205)
T 1gwn_A           99 ------DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM  170 (205)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             ------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence                  89999999999999999999 7899988664  35799999999999964            267889999999


Q ss_pred             HHHhC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy5810         180 AYAWG-VKFVETSVG-LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       180 ~~~~~-~~~~evSa~-~~~~I~~lf~~l~~~i~~  211 (250)
                      ++.++ ++|+++||+ ++.||+++|+++++.+.+
T Consensus       171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          171 AKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            99988 689999999 689999999999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=1.7e-28  Score=198.68  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=99.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce-----------------eEEEEEeCCCCc--cccCCCcccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------------FFIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------------~~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      ...+||+|+|++|||||||++ +|.+....+...+.+++                 ..+.+|||+|++  ..++..++. 
T Consensus        18 ~~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-   95 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALIS-MFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN-   95 (208)
T ss_dssp             EEEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC-
T ss_pred             ccceEEEEECCCCCCHHHHHH-HHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh-
Confidence            456889999999999999998 78774113333222222                 257899999986  556677777 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccC-CCccCHHHHHHHHHHhCCe
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLER-RRQVTHSDGKKLAYAWGVK  186 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~  186 (250)
                               ++|++|+|||++++.+|+.+..|+..+.....  ..++|+++|+||+|+.+ .+.++.+++.++++.++++
T Consensus        96 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~  166 (208)
T 2yc2_C           96 ---------GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD  166 (208)
T ss_dssp             ---------CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE
T ss_pred             ---------hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE
Confidence                     89999999999999999999999999976543  25899999999999987 7889999999999999999


Q ss_pred             EEEEecCC-CCCHHHHHHHHHHHHHhhhh
Q psy5810         187 FVETSVGL-VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       187 ~~evSa~~-~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++++||++ |.|++++|+++++.+.+...
T Consensus       167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          167 FFDVSANPPGKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence            99999999 99999999999998876543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=1.9e-28  Score=194.87  Aligned_cols=149  Identities=21%  Similarity=0.316  Sum_probs=121.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +.+||+++|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..++.     
T Consensus         4 ~~~~i~~~G~~~~GKssl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   75 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP-----   75 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHH--SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT-----
T ss_pred             cEEEEEEECCCCCCHHHHHH-HHHc--CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhcc-----
Confidence            45789999999999999998 7876  333333222221              56699999986  445555666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA  180 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~  180 (250)
                           ++|++++|||++++.+|+.+. .|+..+....  .+.|+++|+||+|+.+.            +.++.+++..++
T Consensus        76 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (186)
T 1mh1_A           76 -----QTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (186)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             -----CCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence                 899999999999999999997 7998886642  48999999999998643            578889999999


Q ss_pred             HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +.++. +++++||++|.|++++|+++.+.+....
T Consensus       149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             HhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence            99997 8999999999999999999999887543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=1.3e-28  Score=194.43  Aligned_cols=150  Identities=23%  Similarity=0.372  Sum_probs=122.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      ....+||+|+|++|||||||++ ++.+  ..+...+.+++               ..+.+|||+|++  ..++..++.  
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~--   85 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLIT-RFMY--DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--   85 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH--
T ss_pred             CCcceEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc--
Confidence            3456889999999999999998 7876  33333222222               157899999986  445555555  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                              ++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++++++
T Consensus        86 --------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (179)
T 2y8e_A           86 --------DSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET  156 (179)
T ss_dssp             --------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred             --------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEE
Confidence                    8999999999999999999999999987653 3679999999999998778888999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHh
Q psy5810         191 SVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ||++|.|++++|+++.+.+.+
T Consensus       157 Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          157 SAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             BTTTTBSHHHHHHHHHHTCC-
T ss_pred             eCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=200.01  Aligned_cols=150  Identities=21%  Similarity=0.303  Sum_probs=111.8

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+++|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..++.    
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~----  104 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLM-VFAD--GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYP----  104 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHH-HHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             cceEEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhc----
Confidence            356889999999999999998 8887  333333333321              57899999986  566677777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKL  179 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~  179 (250)
                            ++|++++|||++++.+|+.+. .|+..+...  ..++|+++|+||+|+...            +.++.+++.++
T Consensus       105 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  176 (214)
T 2j1l_A          105 ------DASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM  176 (214)
T ss_dssp             ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence                  899999999999999999997 799988654  367999999999999654            36788899999


Q ss_pred             HHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         180 AYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       180 ~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++.+++ +|+++||++|.||+++|+++++.+.+.+
T Consensus       177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            999998 8999999999999999999999887543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.7e-29  Score=198.88  Aligned_cols=149  Identities=21%  Similarity=0.324  Sum_probs=121.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ...+||+|+|++|||||||++ +|.+.  .+.    ++.+.+.           ..+.+|||+|++  ..++..++.   
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---   97 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLME-RFTDD--TFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR---   97 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHH-HHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH---
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHhcC--CCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc---
Confidence            456889999999999999998 88873  332    2222111           157899999986  344455555   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEE
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVET  190 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~ev  190 (250)
                             ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.. +++++++
T Consensus        98 -------~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~  169 (192)
T 2il1_A           98 -------SAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA  169 (192)
T ss_dssp             -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred             -------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence                   799999999999999999999999888654 4468999999999999877888899999999885 7899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHh
Q psy5810         191 SVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ||++|.||+++|++|++.+.+
T Consensus       170 SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          170 SAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.7e-29  Score=200.81  Aligned_cols=151  Identities=21%  Similarity=0.370  Sum_probs=121.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ +|.+  ..+...+.++++              .+.+|||+|++  ..++..++.     
T Consensus         7 ~~~ki~vvG~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----   78 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVL-RFVK--GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS-----   78 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHH-HHHH--SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHH-----
T ss_pred             CeeEEEEECCCCCcHHHHHH-HHHc--CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhc-----
Confidence            45779999999999999998 7877  333333322221              57799999986  344445555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                           ++|++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ +.+..+++..++..++++++++||
T Consensus        79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa  152 (199)
T 2gf0_A           79 -----KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSA  152 (199)
T ss_dssp             -----HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBT
T ss_pred             -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEec
Confidence                 79999999999999999999988887766533 24789999999999965 667888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++|.|++++|+++++.+.....
T Consensus       153 ~~~~gi~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          153 KMNYNVKELFQELLTLETRRNM  174 (199)
T ss_dssp             TTTBSHHHHHHHHHHHCSSSCE
T ss_pred             CCCCCHHHHHHHHHHHHhhhhc
Confidence            9999999999999987765433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.96  E-value=9.6e-29  Score=196.10  Aligned_cols=145  Identities=22%  Similarity=0.375  Sum_probs=115.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++.+  ..+...+.++++              .+.+|||+|++  ..++..++.      
T Consensus         8 ~~ki~v~G~~~~GKssl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   78 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLI-SYTS--NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYR------   78 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHH-HHHH--SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGT------
T ss_pred             eEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcc------
Confidence            4679999999999999998 7876  333333333322              45699999986  455566666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCc----------cCHHHHHHHHHHh
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ----------VTHSDGKKLAYAW  183 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~  183 (250)
                          ++|++++|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.+.          ++.+++.++++.+
T Consensus        79 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~  152 (182)
T 3bwd_D           79 ----GADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI  152 (182)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc
Confidence                899999999999999999997 6999886652  4899999999999865443          5788899999999


Q ss_pred             CC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         184 GV-KFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       184 ~~-~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +. +|+++||++|.||+++|+++++.+.
T Consensus       153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          153 GAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            97 8999999999999999999998775

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=1.1e-28  Score=198.70  Aligned_cols=155  Identities=10%  Similarity=0.022  Sum_probs=114.9

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhccccccccc-cccCcee-----------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      .......||+|+|++|||||||++ +|.+.  .+.. .+.++++           .+.+|||+|++  ..++..+++   
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~-~l~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---   85 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIIN-QVKPA--QSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD---   85 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHH-HHSCC--C----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT---
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHH-HHhcC--CCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHh---
Confidence            345677889999999999999998 88883  3333 3333332           67899999986  556666776   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC-------CCCcEEEEeeCCCccCCCc---cCHHHHHHH-H
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI-------GEKAVILVANKADLERRRQ---VTHSDGKKL-A  180 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~-------~~~piilv~nK~Dl~~~~~---v~~~~~~~~-~  180 (250)
                             ++|++|+|||++++++|+.+..|+..+.+....       .++|++||+||+|+.+...   +........ +
T Consensus        86 -------~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  158 (199)
T 4bas_A           86 -------NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM  158 (199)
T ss_dssp             -------TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred             -------cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence                   899999999999999999999999988654221       3789999999999976432   111111111 2


Q ss_pred             HHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       181 ~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +..+++++++||++|.||+++|++|++.+.+..
T Consensus       159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          159 GDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             cCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            446788999999999999999999999887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=198.70  Aligned_cols=151  Identities=23%  Similarity=0.299  Sum_probs=116.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+.+||+|+|++|||||||++ +|.+..  ....++.+.++           ..+.+|||+|++  ..++..++.     
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-----   99 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLM-RLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFR-----   99 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHH-HHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHH-----
T ss_pred             CCCeEEEEECcCCCCHHHHHH-HHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHh-----
Confidence            345789999999999999998 787631  12223333222           157899999986  334444555     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc------CCCccCHHHHHHHHHHhCCeE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE------RRRQVTHSDGKKLAYAWGVKF  187 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------~~~~v~~~~~~~~~~~~~~~~  187 (250)
                           ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.      ..+.+..+++..+++.+++++
T Consensus       100 -----~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~  173 (199)
T 2p5s_A          100 -----KADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF  173 (199)
T ss_dssp             -----HCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEE
T ss_pred             -----hCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeE
Confidence                 799999999999999999999999988654 33578999999999995      457788999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +++||++|.||+++|.+|++.+.+
T Consensus       174 ~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          174 CETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=1.2e-27  Score=193.93  Aligned_cols=147  Identities=20%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ ++.+.  .+...+.++.              ..+.+|||+|++  ..++..++.     
T Consensus        24 ~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-----   95 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLI-VFSKD--QFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYP-----   95 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHH-HHHHS--SCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT-----
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHhC--cCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcC-----
Confidence            56789999999999999998 78773  3332222221              167899999986  455566666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA  180 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~  180 (250)
                           ++|++++|||++++++|+.+ ..|+..+...  ..++|+++|+||+|+.+.            +.++.+++.+++
T Consensus        96 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  168 (201)
T 2gco_A           96 -----DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA  168 (201)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence                 89999999999999999999 6788888654  258999999999999654            568888999999


Q ss_pred             HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +..+. +++++||++|.||+++|+++++.+.+
T Consensus       169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          169 NRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            99998 89999999999999999999987753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=2e-28  Score=200.39  Aligned_cols=152  Identities=17%  Similarity=0.300  Sum_probs=125.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-------------------------eeEEEEEeCCCCc--ccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-------------------------VFFIVYSDTNHTQ--RCL  102 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-------------------------~~~i~i~Dt~g~~--~~~  102 (250)
                      ..+||+|+|++|||||||++ +|.+.  .+...+.++                         ...+.+|||+|++  ..+
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLY-RYTDN--KFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHH-HHHCS--CCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHH-HHhcC--CCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            45789999999999999998 78773  332222221                         1247899999986  444


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA  182 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  182 (250)
                      +..++.          ++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.
T Consensus       101 ~~~~~~----------~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~  170 (217)
T 2f7s_A          101 TTAFFR----------DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK  170 (217)
T ss_dssp             HHHHHT----------TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             HHHHhc----------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            555666          8999999999999999999999999886543336899999999999987778889999999999


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++++++++||+++.||+++|++|++.+.+...
T Consensus       171 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          171 YGIPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             TTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998876543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=9.4e-28  Score=186.65  Aligned_cols=147  Identities=19%  Similarity=0.306  Sum_probs=121.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ ++.+.  .+...+.++..              .+.+|||+|++  ..++..++.      
T Consensus         3 ~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------   73 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTI-QLIQN--HFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------   73 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHHS--SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHH------
T ss_pred             eeEEEEECCCCCCHHHHHH-HHHhC--cCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhc------
Confidence            4679999999999999998 78763  33333222221              46789999976  334444555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          .+|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+ +.+..+++.++++.++++++++||++
T Consensus        74 ----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (166)
T 2ce2_X           74 ----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCC
Confidence                7999999999999999999999999998776556899999999999866 56778889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.|++++|+++.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-28  Score=192.26  Aligned_cols=149  Identities=21%  Similarity=0.343  Sum_probs=119.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee----------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      .+||+++|++|||||||++ ++.+..  ....++.+.+..          .+.+|||+|++  ..++..++.        
T Consensus         3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~--------   73 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVL-RFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSIS--------   73 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHH--------
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcc--------
Confidence            4779999999999999998 787731  112222222221          57899999986  334444555        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                        .+|++++|||++++.+|+.+..|+..+.+... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|
T Consensus        74 --~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  151 (172)
T 2erx_A           74 --KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLN  151 (172)
T ss_dssp             --HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             --cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCC
Confidence              79999999999999999999999888866532 257899999999999877788888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .|++++|+++.+.+.
T Consensus       152 ~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          152 HNVKELFQELLNLEK  166 (172)
T ss_dssp             BSHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.95  E-value=2.3e-28  Score=200.14  Aligned_cols=154  Identities=14%  Similarity=0.121  Sum_probs=123.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCcccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCS  109 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~  109 (250)
                      ....+||+|+|++|||||||++ +|++.  .+...+.++.                ..+.+|||+|++  ..++..++. 
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-   83 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYIN-RVLDG--RFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI-   83 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHC-BCTTC--STTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT-
T ss_pred             ccCccEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh-
Confidence            4456889999999999999998 88863  3333222222                247899999986  445555666 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                               ++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...++++++
T Consensus        84 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (218)
T 4djt_A           84 ---------GASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE  153 (218)
T ss_dssp             ---------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred             ---------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence                     8999999999999999999999999987653 356899999999999877788999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      +||++|.|++++|.+|++.+......
T Consensus       154 ~Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          154 ISAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             EBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             EecCCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999988765443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=4e-28  Score=194.68  Aligned_cols=153  Identities=12%  Similarity=-0.004  Sum_probs=121.4

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhcccc-cc-----------ccccccCc------------eeEEEEEeCCCCc--c
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV-EN-----------FVQTYHPD------------VFFIVYSDTNHTQ--R  100 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~-----------~~~~~~~~------------~~~i~i~Dt~g~~--~  100 (250)
                      .....+||+|+|++|||||||++ .+.+.. ..           ..++++.+            ...+.+|||+|++  .
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            44567889999999999999995 655421 11           11122111            1268899999986  4


Q ss_pred             ccCCCccccccccccccCCCcEEEEEEeCC------CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH
Q psy5810         101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVI------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS  174 (250)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~------~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~  174 (250)
                      .++..+++          ++|++|+|||++      +.++|+.+..|+.++.  ....++|+++|+||+|+.+  .++.+
T Consensus        89 ~~~~~~~~----------~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~--~~~~~  154 (198)
T 3t1o_A           89 ASRKLILR----------GVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPD--ALPVE  154 (198)
T ss_dssp             HHHHHHTT----------TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTT--CCCHH
T ss_pred             HHHHHHHh----------cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccc--ccCHH
Confidence            55566676          899999999999      6688889999998883  2457899999999999965  47889


Q ss_pred             HHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         175 DGKKLAYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       175 ~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++.++++.+++ +++++||++|.|++++|++|++.+.+...
T Consensus       155 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999 99999999999999999999998886544

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=1.9e-27  Score=191.26  Aligned_cols=148  Identities=18%  Similarity=0.202  Sum_probs=119.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce----------------------------------------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV----------------------------------------   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~----------------------------------------   87 (250)
                      ..+||+|+|++|||||||++ +|++..  ....++.+..+                                        
T Consensus         6 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVL-RLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHH-HHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            35779999999999999998 787731  11122222111                                        


Q ss_pred             --------eEEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810          88 --------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI  157 (250)
Q Consensus        88 --------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii  157 (250)
                              ..+.+|||+|++  ..++..++.          .+|++++|||++++.+|+.+..|+..+....   +.|++
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~pii  151 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYR----------GATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIII  151 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHT----------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEE
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhc----------CCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEE
Confidence                    467899999986  333444555          8999999999999999999999999997652   49999


Q ss_pred             EEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         158 LVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       158 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|+||+| ...+.+..+++.++++..+++++++||++|.|++++|++|.+.+.++
T Consensus       152 lv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          152 LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             EEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999 55577889999999999999999999999999999999999888754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.95  E-value=3.9e-28  Score=196.60  Aligned_cols=146  Identities=13%  Similarity=0.068  Sum_probs=114.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.+.. ..+.++.+.+..       .+.+|||+|++  +.++..+++          +
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~-~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~   92 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLH-MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP----------A   92 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHH-HHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG----------G
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHh----------c
Confidence            45679999999999999998 787731 122334444433       67899999986  556667777          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-----------------
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-----------------  182 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------  182 (250)
                      +|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+  .++.+++.+++..                 
T Consensus        93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A           93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccC
Confidence            999999999999999999999999987654456899999999999965  5677888777653                 


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         183 WGVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       183 ~~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      .++++++|||++|.||+++|++|.+.
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            34579999999999999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=4.7e-28  Score=196.90  Aligned_cols=151  Identities=23%  Similarity=0.349  Sum_probs=117.9

Q ss_pred             CccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcc
Q psy5810          44 NFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPF  107 (250)
Q Consensus        44 ~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~  107 (250)
                      ......+.+||+++|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..++
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   99 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY   99 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHH-HHHH--SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHH-HHHh--CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHh
Confidence            33344567889999999999999998 7876  333333333322              45699999986  45556666


Q ss_pred             ccccccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHH
Q psy5810         108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHS  174 (250)
Q Consensus       108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~  174 (250)
                      +          ++|++++|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.+            .++.+
T Consensus       100 ~----------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~  167 (204)
T 4gzl_A          100 P----------QTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP  167 (204)
T ss_dssp             T----------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred             c----------cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHH
Confidence            6          899999999999999999997 7998886653  689999999999986543            37888


Q ss_pred             HHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         175 DGKKLAYAWGV-KFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       175 ~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ++..+++..++ +++++||++|.||+++|+++++.+
T Consensus       168 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          168 QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999986 599999999999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.1e-27  Score=193.25  Aligned_cols=148  Identities=24%  Similarity=0.330  Sum_probs=119.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ +|.+.  .+...+.++.              ..+.+|||+|++  ..++..++.     
T Consensus        24 ~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   95 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLI-VFSKD--EFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP-----   95 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHH-HHHHS--SCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCT-----
T ss_pred             cCcEEEEECcCCCCHHHHHH-HHhcC--CCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcC-----
Confidence            46789999999999999998 78773  3332222222              157899999986  445556666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA  180 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~  180 (250)
                           ++|++++|||++++.+|+.+ ..|+..+...  .+++|+++|+||+|+.+.            +.++.+++..++
T Consensus        96 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  168 (207)
T 2fv8_A           96 -----DTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA  168 (207)
T ss_dssp             -----TCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence                 89999999999999999999 6798888654  258999999999999654            568888999999


Q ss_pred             HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ...+. +++++||++|.||+++|++|++.+.+.
T Consensus       169 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          169 VRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             HhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            99998 899999999999999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-27  Score=193.71  Aligned_cols=151  Identities=24%  Similarity=0.356  Sum_probs=122.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+||+|+|++|||||||++ +|.+..  ....++.+.++           ..+.+|||+|++  ..++..++.      
T Consensus        19 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   91 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLV-RFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR------   91 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHH-HHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT------
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc------
Confidence            45789999999999999998 787631  12223333222           157899999986  444555566      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+ ..+.+..+++..+++.++++++++||++
T Consensus        92 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  165 (213)
T 3cph_A           92 ----GAMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKN  165 (213)
T ss_dssp             ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence                899999999999999999999999998765 3357899999999999 4567888899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy5810         195 VYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~  213 (250)
                      |.||+++|.+|.+.+.+..
T Consensus       166 ~~gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          166 DDNVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             TBSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999887643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.95  E-value=7.6e-29  Score=193.47  Aligned_cols=147  Identities=13%  Similarity=0.019  Sum_probs=109.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      +||+++|++|||||||++ ++.+.. ....++.+....       .+.+|||+|++  +.++..++.          ++|
T Consensus         1 ~ki~~~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~d   69 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NTQ   69 (164)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTT----------TCS
T ss_pred             CEEEEECCCCCCHHHHHH-HHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhc----------cCC
Confidence            479999999999999998 787631 112233332221       67899999986  344455566          899


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecCCCC
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVGLVY  196 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~~~~  196 (250)
                      ++++|||++++++|+.+..|+..+.......+.|+++|+||+|+.+..  ..++....     +...+++++++||++|.
T Consensus        70 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (164)
T 1r8s_A           70 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGD  147 (164)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence            999999999999999999999988765445689999999999996532  22222221     22235679999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy5810         197 KTDELLVGIARQAGL  211 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~  211 (250)
                      |++++|+++++.+.+
T Consensus       148 gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          148 GLYEGLDWLSNQLRN  162 (164)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=3.8e-29  Score=202.24  Aligned_cols=151  Identities=20%  Similarity=0.301  Sum_probs=114.6

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccc--cccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE--NFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~--~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ...+||+|+|++|||||||++ +|.+...  ...++.+.+.           ..+.+|||+|++  ..++..+++     
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----  104 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLL-RFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR-----  104 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTT-SSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C-----
T ss_pred             CcceEEEEECCCCCCHHHHHH-HHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh-----
Confidence            346889999999999999998 8887311  1122222222           157899999986  556677777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++..+++.++++++++||+
T Consensus       105 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~  178 (199)
T 3l0i_B          105 -----GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK  178 (199)
T ss_dssp             -----CCSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC-
T ss_pred             -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECC
Confidence                 899999999999999999999999998554 33579999999999998777788788899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||+++|.+|++.+.+
T Consensus       179 ~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             --HHHHHHHHHHTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.95  E-value=1.1e-27  Score=192.66  Aligned_cols=146  Identities=16%  Similarity=0.126  Sum_probs=114.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.+. ...+.++.+.+..       .+.+|||+|++  +.++..+++          +
T Consensus        22 ~~~ki~~vG~~~vGKSsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~   90 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLH-MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFP----------E   90 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHH-HHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCT----------T
T ss_pred             CccEEEEECCCCCCHHHHHH-HHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHh----------c
Confidence            44579999999999999998 78763 1123334444433       67899999987  455566666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH------------hCCeE
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA------------WGVKF  187 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~  187 (250)
                      +|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+  .++.+++.+++..            .+++|
T Consensus        91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEE
Confidence            999999999999999999999999987654456899999999999965  5667777666542            34679


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q psy5810         188 VETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~  208 (250)
                      +++||++|.||+++|+++++.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999999753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.95  E-value=6.9e-28  Score=189.08  Aligned_cols=148  Identities=12%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCce-------eEEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDV-------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~-------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||++ ++.+.. ....++.+.+.       ..+.+|||+|++  ..++..++.          ++
T Consensus         7 ~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~~   75 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILY-RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYS----------NT   75 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHH-HHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCT----------TC
T ss_pred             ccEEEEECCCCCCHHHHHH-HHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhc----------cC
Confidence            4679999999999999998 786631 11223333222       167899999986  455666666          89


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-----HHHHHhCCeEEEEecCCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-----KLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~evSa~~~  195 (250)
                      |++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+...  .++..     .++...+++++++||++|
T Consensus        76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (171)
T 1upt_A           76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKG  153 (171)
T ss_dssp             SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCC
Confidence            99999999999999999999998886654446899999999999965432  22222     223344678999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy5810         196 YKTDELLVGIARQAGL  211 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~  211 (250)
                      .|++++|+++++.+.+
T Consensus       154 ~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          154 TGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-27  Score=190.25  Aligned_cols=153  Identities=10%  Similarity=0.068  Sum_probs=114.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.++. ....++.+.+..       .+.+|||+|++  ..++..++.          +
T Consensus        15 ~~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~   83 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILY-QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT----------N   83 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHH-HHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHT----------T
T ss_pred             CccEEEEECCCCCCHHHHHH-HHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------C
Confidence            45779999999999999998 788631 122333333222       67899999986  445555666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~  194 (250)
                      +|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+  ....++..+...     ..+++++++||++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            999999999999999999999999987654446899999999999965  334455544432     3456899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      |.|++++|++|++.+......
T Consensus       162 g~gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC----
T ss_pred             CcCHHHHHHHHHHHHHHHhhh
Confidence            999999999999987655443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.95  E-value=5.2e-27  Score=188.04  Aligned_cols=149  Identities=16%  Similarity=0.081  Sum_probs=115.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+.+||+|+|++|||||||++ +|.+.. .+...+.++++           .+.+|||+|++  +.++..++.      
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~-~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   89 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIIN-KLKPSN-AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYK------   89 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHH-HTSCGG-GCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGG------
T ss_pred             CCCccEEEEECCCCCCHHHHHH-HHhcCC-CCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHh------
Confidence            3456789999999999999998 788742 12333333332           67899999986  455566666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC--CCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--GEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKF  187 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~  187 (250)
                          ++|++++|||++++.+|+.+..|+..+.+....  .++|+++|+||+|+.+  .++.++..++..     ..++++
T Consensus        90 ----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 2h57_A           90 ----EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHI  163 (190)
T ss_dssp             ----GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEE
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEE
Confidence                899999999999999999999999998765433  6899999999999965  345566666553     235789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q psy5810         188 VETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +++||++|.||+++|++|.+.+.
T Consensus       164 ~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          164 CASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEccCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999998664

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=1.2e-27  Score=196.59  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=122.0

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      .....+||+++|++|||||||++ +|+.+  .....++.+.+..           .+.+|||+|++  ..++..+++   
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---   86 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVK-RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI---   86 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHT-TBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT---
T ss_pred             CcccceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh---
Confidence            34566889999999999999998 76652  1122333333322           57789999986  455666676   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                             ++|++++|||++++.+|+.+..|+..+.+..  .++|+++|+||+|+.+... . .+...+++..+++|+++|
T Consensus        87 -------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S  155 (221)
T 3gj0_A           87 -------QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDIS  155 (221)
T ss_dssp             -------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECB
T ss_pred             -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEe
Confidence                   8999999999999999999999999997653  5899999999999975433 2 256778888999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |++|.||+++|.+|.+.+.....
T Consensus       156 a~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          156 AKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             GGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999876543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=1.5e-27  Score=190.90  Aligned_cols=150  Identities=14%  Similarity=0.056  Sum_probs=114.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.+.. ....++.+....       .+.+|||+|++  +.++..++.          +
T Consensus        21 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~   89 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILY-RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFS----------D   89 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHH-HTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSST----------T
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhh----------c
Confidence            45779999999999999998 787631 112233333322       67899999986  566677777          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa~~  194 (250)
                      +|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+..  ..++...     .+...+++++++||++
T Consensus        90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A           90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999999999988765445689999999999996532  2222222     2233456799999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|+++.+.+.+.
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.94  E-value=4.9e-28  Score=193.12  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=111.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      ..+||+++|++|||||||++ ++.+.. ....++.+.+..       .+.+|||+|++  +.++..++.          +
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~   83 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE----------N   83 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHH-HHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHT----------T
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------C
Confidence            45779999999999999998 788741 122344443222       67899999986  344555666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~  194 (250)
                      +|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+.  .++..+..     ...+++++++||++
T Consensus        84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCC
Confidence            999999999999999999999998886544446899999999999975432  23332221     12356799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.||+++|+++++.+.+
T Consensus       162 g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CTTHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.94  E-value=7.1e-27  Score=186.37  Aligned_cols=150  Identities=11%  Similarity=0.062  Sum_probs=114.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.+.. ....++.+.+..       .+.+|||+|++  ..++..++.          +
T Consensus        17 ~~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~   85 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILK-KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE----------S   85 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHH-HHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCT----------T
T ss_pred             CeeEEEEECCCCCCHHHHHH-HHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------C
Confidence            45779999999999999998 787742 112223332221       67899999986  455666666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~  194 (250)
                      +|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+..  ..++..+..     ...+++++++||++
T Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A           86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVT  163 (186)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence            99999999999999999999999988765445689999999999996543  333333322     13456899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|+++.+.+.+.
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.94  E-value=3.8e-28  Score=195.61  Aligned_cols=148  Identities=11%  Similarity=0.045  Sum_probs=108.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+|+|++|||||||++ ++.++. ....++.+....       .+.+|||+|++  ..++..++.          +
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~   96 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQ----------N   96 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHH-HHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHH----------T
T ss_pred             CccEEEEECCCCCCHHHHHH-HHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------c
Confidence            45789999999999999998 787631 112233332221       67899999986  344445555          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa~~  194 (250)
                      +|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+..  ..++..+     ++...+++++++||++
T Consensus        97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~  174 (192)
T 2b6h_A           97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQ  174 (192)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCC
Confidence            99999999999999999999999998765445689999999999996532  2222221     1122346799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~  210 (250)
                      |.|++++|++|++.+.
T Consensus       175 g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          175 GTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TBTHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            9999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=4.8e-28  Score=194.05  Aligned_cols=149  Identities=13%  Similarity=0.084  Sum_probs=112.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce----e-------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----F-------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..+.+||+|+|++|||||||++ +|.+  ..+...+.+++    .       .+.+|||+|++  ..++..++.      
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   89 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVN-VIAS--GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCR------   89 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHH-HHHH--SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHT------
T ss_pred             CCCccEEEEECCCCCCHHHHHH-HHHc--CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHc------
Confidence            3456889999999999999998 7876  33333333332    2       57799999986  444555555      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEE
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVE  189 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e  189 (250)
                          ++|++|+|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.  ...++..+..     ...++++++
T Consensus        90 ----~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
T 1zd9_A           90 ----GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYS  163 (188)
T ss_dssp             ----TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             ----cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEE
Confidence                89999999999999999999999998866444468999999999999653  2223222211     123467999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +||++|.||+++|++|++.+.+
T Consensus       164 ~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          164 ISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999986654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=4.8e-27  Score=186.98  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=111.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      ..+.+||+++|++|||||||++ +|.+... ...++.+.+..       .+.+|||+|++  ..++..++.         
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---------   87 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILY-QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT---------   87 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHH-HHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGT---------
T ss_pred             CCceeEEEEECCCCCCHHHHHH-HHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhc---------
Confidence            3456789999999999999998 7877311 22333333322       67899999986  455566666         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa  192 (250)
                       ++|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.  ...++..+..     ...+++++++||
T Consensus        88 -~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa  164 (181)
T 2h17_A           88 -NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCA  164 (181)
T ss_dssp             -TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred             -cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence             89999999999999999999999998876443578999999999999652  3344444433     234568999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQ  208 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~  208 (250)
                      ++|.|++++|++|++.
T Consensus       165 ~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          165 LTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTBTHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHhh
Confidence            9999999999999754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=1.1e-26  Score=184.40  Aligned_cols=150  Identities=13%  Similarity=0.032  Sum_probs=111.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ ++.++ .....++.+....       .+.+|||+|++  ..++..++.          +
T Consensus        17 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~   85 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILY-RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYA----------D   85 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHH-HTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTT----------T
T ss_pred             CccEEEEECCCCCCHHHHHH-HHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------c
Confidence            45779999999999999998 78763 1122333333222       67799999986  445556666          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGL  194 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~  194 (250)
                      +|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.  ...++..+...     ..+++++++||++
T Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A           86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            9999999999999999999999999876544578999999999998653  33444443322     2345799999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy5810         195 VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~  212 (250)
                      |.|++++|+++.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999887643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=1.5e-27  Score=190.64  Aligned_cols=149  Identities=14%  Similarity=0.114  Sum_probs=112.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccc----cccccCce--------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQ  110 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~  110 (250)
                      .+||+|+|++|||||||++ +|++....+    .++.+.++              ..+.+|||+|++  ..+++.+++  
T Consensus         2 ~~kv~ivG~~gvGKStLl~-~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--   78 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQ-QLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT--   78 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHH-HHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHH--
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHcc--
Confidence            4679999999999999998 888742222    22332221              157799999986  455666666  


Q ss_pred             cccccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC---HHHHHHHHHHhCCe
Q psy5810         111 VENFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT---HSDGKKLAYAWGVK  186 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~  186 (250)
                              +++++++|||++++ .+|+.+..|+.++...  ..++|+++||||+|+.+.+.++   .+.+..+++.++++
T Consensus        79 --------~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  148 (184)
T 2zej_A           79 --------QRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP  148 (184)
T ss_dssp             --------HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred             --------CCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence                    79999999999997 5899999999998654  2578999999999997654443   34456677777886


Q ss_pred             ----EEEEecCCCC-CHHHHHHHHHHHHHhh
Q psy5810         187 ----FVETSVGLVY-KTDELLVGIARQAGLN  212 (250)
Q Consensus       187 ----~~evSa~~~~-~I~~lf~~l~~~i~~~  212 (250)
                          |+++||+++. ++.++++.+.+.+.+.
T Consensus       149 ~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          149 AIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             EEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             chhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence                9999999997 9999999998877653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=3.1e-28  Score=197.53  Aligned_cols=147  Identities=22%  Similarity=0.357  Sum_probs=118.7

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ..+.+||+++|++|||||||++ +|.+  ..+...+.++..              .+.+|||+|++  ..++..++.   
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---  100 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP---  100 (204)
Confidence            4566889999999999999998 7876  333333333321              45699999986  456666777   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHH
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKK  178 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~  178 (250)
                             ++|++++|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.+            .++.+++.+
T Consensus       101 -------~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 3th5_A          101 -------QTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
Confidence                   899999999999999999997 7888885532  389999999999996532            567788888


Q ss_pred             HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      +++.+++ +++++||++|.||+++|+++++.+
T Consensus       172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9998888 899999999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=1.6e-26  Score=186.47  Aligned_cols=147  Identities=10%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccC--------------ceeEEEEEeCCCCcc--ccC---CCccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP--------------DVFFIVYSDTNHTQR--CLT---PMPFC  108 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~--------------~~~~i~i~Dt~g~~~--~~~---~~~~~  108 (250)
                      ..+.+||+++|++|||||||++ ++.+.... ..+.+.              ....+.+|||+|+++  ...   ..+++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQK-VVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHH-HHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             cCcceEEEEECCCCCCHHHHHH-HHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            4455779999999999999997 66663110 011111              112678999999873  333   46666


Q ss_pred             cccccccccCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-------CCccCHHHHHHH
Q psy5810         109 SQVENFVQTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-------RRQVTHSDGKKL  179 (250)
Q Consensus       109 ~~~~~~~~~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------~~~v~~~~~~~~  179 (250)
                                ++|++|+|||++++  ++++.+..|+.++...  ..++|++|||||+|+.+       .+.+..+++.++
T Consensus        95 ----------~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~  162 (196)
T 3llu_A           95 ----------GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL  162 (196)
T ss_dssp             ----------TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence                      89999999999997  7888888888887442  46899999999999743       456777788888


Q ss_pred             HH----HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         180 AY----AWGVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       180 ~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ++    .++++|+++||++ .||+++|..+++.+
T Consensus       163 ~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          163 ADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             HHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            88    7788999999999 99999999999865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.93  E-value=1.4e-25  Score=194.44  Aligned_cols=147  Identities=22%  Similarity=0.337  Sum_probs=121.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||++ ++.+  ..+...+.+++.              .+.+|||+|++  ..++..++.     
T Consensus       154 ~~~~i~i~G~~~~GKssli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----  225 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP-----  225 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHH-HHHH--SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCT-----
T ss_pred             ceeEEEEECCCCCChHHHHH-HHHh--CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhcc-----
Confidence            44789999999999999998 7776  333333333332              45699999986  455566666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA  180 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~  180 (250)
                           ++|++++|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.            +.++.+++.+++
T Consensus       226 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  298 (332)
T 2wkq_A          226 -----QTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  298 (332)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             -----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence                 899999999999999999997 7988886542  48999999999998543            678899999999


Q ss_pred             HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +..++ +|+++||++|.||+++|+++++.+..
T Consensus       299 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          299 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            99997 89999999999999999999988764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=4.8e-27  Score=202.85  Aligned_cols=146  Identities=11%  Similarity=0.077  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-c----cccccccCcee------EEEEEeCCCCcccc-----CCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-E----NFVQTYHPDVF------FIVYSDTNHTQRCL-----TPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~----~~~~~~~~~~~------~i~i~Dt~g~~~~~-----~~~~~~~~~~~~~~  116 (250)
                      ||+++|++|||||||++ ++.+.. .    .+.+|++....      ++++|||+||++..     ++.||+        
T Consensus         1 KIvllGdsgvGKTSLl~-~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr--------   71 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICK-VVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFK--------   71 (331)
T ss_dssp             CEEEECSTTSSTTHHHH-HHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHT--------
T ss_pred             CEEEECCCCCCHHHHHH-HHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhcc--------
Confidence            69999999999999997 665531 1    12344444433      68999999998543     356778        


Q ss_pred             cCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC-------CccCHHHHHHHHHH----h
Q psy5810         117 TYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR-------RQVTHSDGKKLAYA----W  183 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------~~v~~~~~~~~~~~----~  183 (250)
                        +++++|+|||++++  ++++.+..|+.++.+.  .+++|++++|||+|+..+       |.|..++++++++.    +
T Consensus        72 --~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~  147 (331)
T 3r7w_B           72 --SVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV  147 (331)
T ss_dssp             --TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred             --CCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence              99999999999998  3444444455555332  468999999999999653       56888888899886    6


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +++|+||||++ .+|.++|..+++.+...
T Consensus       148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          148 QVSFYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             CceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence            88999999998 59999999999887754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.93  E-value=6.6e-25  Score=177.36  Aligned_cols=149  Identities=21%  Similarity=0.230  Sum_probs=121.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ ++++  ..+...+.+++               ..+.+|||+|++  +.++..++.     
T Consensus         5 ~~kv~lvG~~g~GKSTLl~-~l~~--~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~-----   76 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLS-RFTR--NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYR-----   76 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHH-HHHH--SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHT-----
T ss_pred             eEEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHh-----
Confidence            4789999999999999998 7887  33322222221               146689999986  344555566     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           +++++++|||+++..+|+++..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...++.++++||+
T Consensus        77 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal  150 (199)
T 2f9l_A           77 -----GAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL  150 (199)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence                 899999999999999999999999887543 34578999999999998777888889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++.|+.++|+++.+.+.+..
T Consensus       151 ~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999887543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=1e-24  Score=175.39  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=119.6

Q ss_pred             CcccccCCccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------e---------EEEEEeCCCCc--
Q psy5810          37 PFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------F---------FIVYSDTNHTQ--   99 (250)
Q Consensus        37 ~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------~---------~i~i~Dt~g~~--   99 (250)
                      |.|.++... +....+||+|+|++|||||||++ ++.+.  .+...+.+++      .         .+.+|||+|++  
T Consensus        16 ~~~~~~~~~-~~~~~~kv~lvG~~g~GKSTLl~-~l~~~--~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~   91 (191)
T 1oix_A           16 GRAMGTRDD-EYDYLFKVVLIGDSGVGKSNLLS-RFTRN--EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY   91 (191)
T ss_dssp             --------C-CCSEEEEEEEEECTTSSHHHHHH-HHHHS--CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred             CcccCCccc-ccCcceEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence            344444442 22345789999999999999998 78773  3332222221      1         34579999986  


Q ss_pred             cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                      ..++..++.          .++++++|||+++..+|+++..|+..+.+. ...+.|+++++||+|+.+.+.+..+++..+
T Consensus        92 ~~~~~~~~~----------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l  160 (191)
T 1oix_A           92 RAITSAYYR----------GAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF  160 (191)
T ss_dssp             SCCCHHHHT----------TCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             hhhhHHHhh----------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            345555566          789999999999999999999999887543 335789999999999987777888899999


Q ss_pred             HHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         180 AYAWGVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       180 ~~~~~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      +...++.++++||+++.|++++|+++.+.+
T Consensus       161 ~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          161 AEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.9e-25  Score=186.88  Aligned_cols=90  Identities=19%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             CCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCeEEEEecCCC
Q psy5810         119 HPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVKFVETSVGLV  195 (250)
Q Consensus       119 ~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa~~~  195 (250)
                      ++|++|+|||++++  .||+.+..|+.++.+.....++|++|||||+|+.+.+.+  +++.++++. .+++|+++||++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN  239 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence            58999999999999  999999999999876533467999999999999765555  577788876 4889999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .||+++|++|++.+.
T Consensus       240 ~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          240 VNVDLAFSTLVQLID  254 (255)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=9.7e-25  Score=180.20  Aligned_cols=162  Identities=11%  Similarity=0.033  Sum_probs=111.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc-c-----ccCce-------eEEEEEeCCCCccccC-CCc---ccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-T-----YHPDV-------FFIVYSDTNHTQRCLT-PMP---FCSQV  111 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~-----~~~~~-------~~i~i~Dt~g~~~~~~-~~~---~~~~~  111 (250)
                      .+.+||+|+|++|||||||++ +|++.  .+.. .     .....       ..+.+|||+|+...-. ...   +. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMN-IVSRA--NVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TI  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHH-HHTTT--CEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHH-HHhCC--CCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HH
Confidence            345779999999999999998 78874  3221 1     11111       2578999999842100 000   00 00


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH---HHHHHHHHhC--
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS---DGKKLAYAWG--  184 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~--  184 (250)
                      ..+  ...+|++|+|||++++.+|+.  ...|+..+...  ..++|+++|+||+|+.+.+.+..+   ....++...+  
T Consensus       103 ~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
T 2qu8_A          103 TAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP  178 (228)
T ss_dssp             HHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC
T ss_pred             HHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC
Confidence            111  127899999999999988752  34566666432  247999999999999776677654   4566777777  


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL  218 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~  218 (250)
                      ++++++||++|.||+++|++|++.+.+.+.....
T Consensus       179 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~  212 (228)
T 2qu8_A          179 IKFSSFSTLTGVGVEQAKITACELLKNDQAESIL  212 (228)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998766554333

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.92  E-value=3.7e-25  Score=173.69  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=104.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccc--c--cccCce-------eEEEEEeCCCCccccCCCccccccccccccCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV--Q--TYHPDV-------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~--~~~~~~-------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~  119 (250)
                      .+||+++|++|||||||++ ++.+......  +  +.....       ..+.+|||+|+++.............+....+
T Consensus         3 ~~~v~lvG~~gvGKStL~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFN-ALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHH-HHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            4679999999999999998 7877311100  1  111111       26789999998743211100111111211126


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|++++|+|.++.++   ...|+.++.+    .+.|+++|+||+|+...+.++. ++.++++.++++++++||++|.|++
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            899999999998654   4557777754    3789999999999865555543 4678888899999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         200 ELLVGIARQA  209 (250)
Q Consensus       200 ~lf~~l~~~i  209 (250)
                      ++|+++++.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.92  E-value=6.9e-26  Score=197.49  Aligned_cols=147  Identities=14%  Similarity=0.039  Sum_probs=109.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      +.+||+|+|++|||||||++ +|.+.  .+..   |.+..+.       .+.+|||+|++  ..++..+++         
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~-~l~~~--~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---------  231 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILY-KLKLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---------  231 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHH-HTCSS--CCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHT---------
T ss_pred             CcceEEEECCCCccHHHHHH-HHhCC--CCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhc---------
Confidence            45789999999999999998 78773  3332   3332222       67899999986  444555666         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa  192 (250)
                       ++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+..  ..++.....     ...+++++++||
T Consensus       232 -~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSA  308 (329)
T 3o47_A          232 -NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCA  308 (329)
T ss_dssp             -TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred             -cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEEC
Confidence             899999999999999999999988888665555689999999999997533  222222211     223457999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy5810         193 GLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++|.||+++|++|++.+.+
T Consensus       309 k~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          309 TSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             TTTBTHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHHh
Confidence            9999999999999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=4.6e-25  Score=190.53  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee------------EEEEEeCCCCcc-------ccCCCccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF------------FIVYSDTNHTQR-------CLTPMPFCSQ  110 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~------------~i~i~Dt~g~~~-------~~~~~~~~~~  110 (250)
                      .+||+++|++|||||||++ ++.+....+. ..+++|++            .+.+|||+|+++       .++..+++  
T Consensus         3 ~~KI~lvG~~~vGKSSLi~-~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~--   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRS-IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQ--   79 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHT--
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhc--
Confidence            4689999999999999998 7776422322 23444432            577999999973       23344455  


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccC--CCc----cCHHHHHHHHHHh
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS-KYIGEKAVILVANKADLER--RRQ----VTHSDGKKLAYAW  183 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~--~~~----v~~~~~~~~~~~~  183 (250)
                              ++|++|+|||++++++|+++..|...+... ...+++|+++||||+|+.+  .+.    +..+++.++++.+
T Consensus        80 --------~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~  151 (307)
T 3r7w_A           80 --------MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF  151 (307)
T ss_dssp             --------TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --------cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence                    899999999999999999997775554332 1246799999999999965  454    6778899999999


Q ss_pred             C---CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         184 G---VKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       184 ~---~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      |   ++++++||++ .++.++|..++..+...
T Consensus       152 g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          152 GFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             TCCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred             CCCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence            7   6899999999 89999999999876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.92  E-value=1e-25  Score=183.83  Aligned_cols=148  Identities=12%  Similarity=0.089  Sum_probs=98.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCc--cc-cCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQ--RC-LTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~--~~-~~~~~~~~~~  111 (250)
                      ..+.+||+++|++|||||||++ +|++.  .+...+.++.             ..+.+|||+|++  .. ++..+++   
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---   77 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFV-RLLTG--QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS---   77 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHH-HHHHS--CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGG---
T ss_pred             CCCCCEEEEECCCCCCHHHHHH-HHhCC--CcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHh---
Confidence            3445779999999999999998 78773  3443333221             258899999987  23 4555666   


Q ss_pred             ccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhh--hCCCCCcEEEEeeCCCccCCCccCH--HHHH---------
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDS--KYIGEKAVILVANKADLERRRQVTH--SDGK---------  177 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~~~~v~~--~~~~---------  177 (250)
                             ++|++|+|||+++.. ++..+..|+..+...  ....++|+++|+||+|+.+.+....  +...         
T Consensus        78 -------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~  150 (214)
T 2fh5_B           78 -------SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT  150 (214)
T ss_dssp             -------GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence                   899999999999964 566665554444322  2345789999999999965433211  1111         


Q ss_pred             -----------------------HHHH-Hh--CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy5810         178 -----------------------KLAY-AW--GVKFVETSVGLV------YKTDELLVGIARQ  208 (250)
Q Consensus       178 -----------------------~~~~-~~--~~~~~evSa~~~------~~I~~lf~~l~~~  208 (250)
                                             .|+. .+  +++|+||||++|      .||+++|++|.+.
T Consensus       151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                   1111 11  567999999999      9999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=4.6e-25  Score=175.93  Aligned_cols=146  Identities=14%  Similarity=0.030  Sum_probs=106.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------EEEEEeCCCCc-------------cccCCCcccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------FIVYSDTNHTQ-------------RCLTPMPFCS  109 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------~i~i~Dt~g~~-------------~~~~~~~~~~  109 (250)
                      +||+++|++|||||||++ ++.+.  .+...+.+++.         .+.+|||+|..             ..++..+++ 
T Consensus         2 ~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~-   77 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIY-RLTGK--KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE-   77 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHH-HHHSC--CCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHH-HHhCc--CCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHH-
Confidence            579999999999999998 88874  33333322221         57899999942             122223333 


Q ss_pred             ccccccccCC-CcEEEEEEeCCCHHhHHHH-HHHHHH--------HHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810         110 QVENFVQTYH-PDVFVIVYSVIERKTFKKA-EDMLKT--------LWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       110 ~~~~~~~~~~-ad~iilV~D~~~~~Sf~~~-~~~~~~--------i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                               + ++++++||++.|..+|+.+ ..|...        +.......++|+++|+||+|+...+   .+++.++
T Consensus        78 ---------~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~  145 (190)
T 2cxx_A           78 ---------DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFL  145 (190)
T ss_dssp             ---------HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHH
T ss_pred             ---------hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHH
Confidence                     4 7778888888888888887 667653        2222223579999999999986543   5678888


Q ss_pred             HHHhCCe-------EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         180 AYAWGVK-------FVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       180 ~~~~~~~-------~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++.++++       ++++||++|.|++++|+++++.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          146 AEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            9888874       699999999999999999999886543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.90  E-value=2.5e-23  Score=164.15  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccc----cCce---------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY----HPDV---------FFIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~----~~~~---------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +.+||+++|++|||||||++ +|.+.  .+...+    ..+.         ..+.+|||+|++  ..++..++.      
T Consensus         7 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   77 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLD-AIRHS--KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQ------   77 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHH-HHHTT--CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCC------
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCC--ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHh------
Confidence            34569999999999999998 78773  222211    1111         267899999986  445555555      


Q ss_pred             cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-------C
Q psy5810         115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-------G  184 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~  184 (250)
                          .+|++++|||+++   +.+++.+    ..+.    ..++|+++|+||+|+.+.   ..++........       +
T Consensus        78 ----~~d~~i~v~d~~~~~~~~~~~~l----~~~~----~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~  142 (178)
T 2lkc_A           78 ----VTDIVILVVAADDGVMPQTVEAI----NHAK----AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWG  142 (178)
T ss_dssp             ----CCCEEEEEEETTCCCCHHHHHHH----HHHG----GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTT
T ss_pred             ----hCCEEEEEEECCCCCcHHHHHHH----HHHH----hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcC
Confidence                8999999999998   4555433    2222    247899999999998652   233333333222       2


Q ss_pred             --CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         185 --VKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       185 --~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                        ++++++||++|.|++++|++|++.+...+
T Consensus       143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             SSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             CcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence              47999999999999999999998776543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=1e-23  Score=168.07  Aligned_cols=155  Identities=15%  Similarity=0.079  Sum_probs=108.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~  118 (250)
                      +.+||+++|++|||||||++ ++++.........+.+.           ..+.+|||+|++..............+....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   84 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFN-ALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   84 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHH-HHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence            45789999999999999998 78873111111111111           1578999999874321110001111111111


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+|++++|+|.++   ++....|+..+..    .+.|+++|+||+|+...+.+. .++.++++.++++++++||+++.|+
T Consensus        85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence            5899999999885   5566778887754    478999999999986655554 4577888899999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy5810         199 DELLVGIARQAGLNK  213 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~  213 (250)
                      +++|+++++.+....
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998886654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.89  E-value=1.1e-23  Score=168.88  Aligned_cols=148  Identities=11%  Similarity=-0.001  Sum_probs=96.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCC----------c--cccCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHT----------Q--RCLTPMPF  107 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~----------~--~~~~~~~~  107 (250)
                      ..++|+|+|++|||||||++ ++.+..  ....++.+.+..        .+.+|||+|-          +  ..++..++
T Consensus        22 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFIN-SLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHH-HHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence            45679999999999999998 787731  122223322221        5789999992          2  12222233


Q ss_pred             ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH--HHHHH-HHHHhC
Q psy5810         108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH--SDGKK-LAYAWG  184 (250)
Q Consensus       108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~-~~~~~~  184 (250)
                      .       ....+|++++|+|++++.++.... ++..+..    .+.|+++|+||+|+.+.+.+..  +++.+ ++...+
T Consensus       101 ~-------~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A          101 T-------TREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             H-------HCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             h-------hhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            2       111349999999999988877643 2222222    5789999999999976554432  22332 332346


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ++++++||++|.|++++|+++.+.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            78999999999999999999988664

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.88  E-value=4.7e-24  Score=168.75  Aligned_cols=147  Identities=11%  Similarity=0.098  Sum_probs=99.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCccccCCCcccc--cccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCLTPMPFCS--QVENFVQT  117 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~--~~~~~~~~  117 (250)
                      .||+|+|++|||||||++ ++.+....+... .+.+.           ..+.+|||+|+++...  .+..  ....+..+
T Consensus         5 ~ki~ivG~~g~GKStLl~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLN-ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAWQEI   81 (172)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHHHHH
Confidence            579999999999999998 787742111111 11111           1578999999863210  0000  00001111


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      +++|++++|||++++.+++. ..|+..+.+. ...++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            28999999999999988874 5677777554 345799999999999854211       12223467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy5810         198 TDELLVGIARQAG  210 (250)
Q Consensus       198 I~~lf~~l~~~i~  210 (250)
                      ++++|+++.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.88  E-value=9.7e-23  Score=171.79  Aligned_cols=152  Identities=18%  Similarity=0.072  Sum_probs=107.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~  118 (250)
                      +.+||+++|++|||||||++ +|++.........+.+++           .+.+|||+|++.......-......+....
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n-~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFN-ALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHH-HHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            45789999999999999999 888742221222222322           678999999874321110000001111112


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|++++|+|.++.++..   .|...+..    .++|+++|+||+|+...+.+.. ++.++++.++++++++||++|.|+
T Consensus        83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence            799999999999976543   46666643    3799999999999866555543 477889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy5810         199 DELLVGIARQAG  210 (250)
Q Consensus       199 ~~lf~~l~~~i~  210 (250)
                      +++|+++.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.88  E-value=1.5e-23  Score=162.64  Aligned_cols=145  Identities=17%  Similarity=0.007  Sum_probs=94.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCccccCCCccccccccc-cccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENF-VQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~-~~~~  118 (250)
                      .||+++|++|||||||++ ++.+....+.. ..+.+.           ..+.+|||+|+.....  ......+.. ..++
T Consensus         2 ~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFN-RLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK--WEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS--CCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc--hHHHHHHHHHHHHH
Confidence            479999999999999998 78764211111 111111           1678999999874211  100000000 0112


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~  197 (250)
                      .+|++++|||++++.+...  .|+.+..+.   .++|+++|+||+|+.+.+    +++.+++ .+++ +++++||++|.|
T Consensus        79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             hCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            8999999999998644432  233333222   478999999999986532    3344555 6777 799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy5810         198 TDELLVGIARQA  209 (250)
Q Consensus       198 I~~lf~~l~~~i  209 (250)
                      ++++|+++++.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.88  E-value=6.2e-23  Score=189.70  Aligned_cols=152  Identities=12%  Similarity=0.080  Sum_probs=114.3

Q ss_pred             ccccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-------------------eEEEEEeCCCCc--cccC
Q psy5810          47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-------------------FFIVYSDTNHTQ--RCLT  103 (250)
Q Consensus        47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-------------------~~i~i~Dt~g~~--~~~~  103 (250)
                      .....+||+++|++|||||||++ ++.+..  ....++.+.++                   ..+.+|||+|++  ..+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~-~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~  115 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLK-QLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH  115 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHH-HHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred             ccccceEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence            35667899999999999999998 888742  11222222222                   268899999986  4555


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW  183 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~  183 (250)
                      ..+++          ++|++|+|||+++.   +.+..|+.++....  .+.|+++||||+|+.+.+.+..+++.+++...
T Consensus       116 ~~~l~----------~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~  180 (535)
T 3dpu_A          116 QFFMT----------RSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI  180 (535)
T ss_dssp             HHHHH----------SSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG
T ss_pred             HHHcc----------CCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhc
Confidence            55666          89999999999865   55677888887653  47999999999999877888889999999999


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +++++++||++|.||+++|..+.+.+.....
T Consensus       181 ~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          181 ENRFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             TTCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             CCceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999998876543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.87  E-value=1.5e-22  Score=171.82  Aligned_cols=151  Identities=14%  Similarity=0.057  Sum_probs=105.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCce----------eEEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      .+||+++|++|||||||+| +|++.........|.++          ..+.+|||+|++..............+....++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n-~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~   81 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA   81 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHH-HHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence            3679999999999999999 88874211111112222          257899999987432111000111111111269


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                      |++++|+|.++.+++   ..|..++..    .++|+++|+||+|+...+.+. .++..+++.++++++++||++|.||++
T Consensus        82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~e  153 (272)
T 3b1v_A           82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQ  153 (272)
T ss_dssp             SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred             CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence            999999999987654   346666643    478999999999986555554 456788889999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         201 LLVGIARQAG  210 (250)
Q Consensus       201 lf~~l~~~i~  210 (250)
                      +|.++++.+.
T Consensus       154 l~~~i~~~~~  163 (272)
T 3b1v_A          154 VVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHSCT
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.87  E-value=1.1e-22  Score=162.54  Aligned_cols=147  Identities=14%  Similarity=0.027  Sum_probs=101.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCCc------------cccCCCccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHTQ------------RCLTPMPFC  108 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~~------------~~~~~~~~~  108 (250)
                      ..+||+++|++|||||||++ ++.+.. ....++.+.+..        .+.+|||+|..            ..++..+++
T Consensus        22 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLN-ALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK  100 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHH-HHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence            44679999999999999998 787742 122233332222        57799999932            122222332


Q ss_pred             cccccccccCCCcEEEEEEeCCCHHh--HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHHHHHHHHHHhC
Q psy5810         109 SQVENFVQTYHPDVFVIVYSVIERKT--FKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHSDGKKLAYAWG  184 (250)
Q Consensus       109 ~~~~~~~~~~~ad~iilV~D~~~~~S--f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~  184 (250)
                             ....+|++++|+|.++..+  +..+..|+...       ++|+++|+||+|+.+.  +....+++.+++...+
T Consensus       101 -------~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A          101 -------NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             -------HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             -------cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence                   1125699999999988643  34444555432       6899999999998542  3344556666776644


Q ss_pred             -CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 -VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 -~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                       ++++++||++|.||+++|+++.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence             689999999999999999999987753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.87  E-value=1.7e-22  Score=174.57  Aligned_cols=159  Identities=14%  Similarity=0.024  Sum_probs=114.9

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCc------------eeEEEEEeCCCCccccCCC----ccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPD------------VFFIVYSDTNHTQRCLTPM----PFCSQ  110 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~------------~~~i~i~Dt~g~~~~~~~~----~~~~~  110 (250)
                      +...-+|+++|.+|||||||+| ++++.... .....+.+            -..+.+|||+|+.+.....    .+...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin-~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLN-NLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHH-HHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHH-HHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            4455679999999999999999 78874211 11111111            1257899999986422100    00001


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEE
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFV  188 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~  188 (250)
                      ...+  ++++|++++|+|++++.++++...|+..+..    .++|+++|+||+|+...+....+....+.+.++  .+++
T Consensus        86 ~~~~--l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           86 AKQS--LEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHH--HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHH--hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence            1111  1279999999999999999888888887754    478999999999987445556677778888875  6799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++||++|.|++++|+++.+.+....
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCC
Confidence            9999999999999999999886543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=6.4e-23  Score=167.62  Aligned_cols=140  Identities=10%  Similarity=0.072  Sum_probs=99.2

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee------EEEEEeCCCCcc--ccCCCcccccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF------FIVYSDTNHTQR--CLTPMPFCSQVENFVQT  117 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~  117 (250)
                      ...++|+++|++|||||||++ ++.+.  .+..   .+.+++.      .+.+|||+|++.  ..+..+++...      
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~------   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLT-LLTTD--SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA------   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHH-HHHHS--SCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHG------
T ss_pred             CCCCEEEEECCCCCCHHHHHH-HHhcC--CCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhcc------
Confidence            345679999999999999998 78773  3322   3444443      688999999863  33444444100      


Q ss_pred             CCCcEEEEEEeCC-CHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhCCeE
Q psy5810         118 YHPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQVT------HSDGKKLAYAWGVKF  187 (250)
Q Consensus       118 ~~ad~iilV~D~~-~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~  187 (250)
                      ..+|++|+|||++ ++.+|+.+..|+.++....   ...++|+++|+||+|+...+.+.      .+++..++...+++|
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            0289999999999 8999999999998886543   34689999999999997766554      556777888888889


Q ss_pred             EEEecCCCCC
Q psy5810         188 VETSVGLVYK  197 (250)
Q Consensus       188 ~evSa~~~~~  197 (250)
                      +++||++|.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999999875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.86  E-value=2.1e-22  Score=169.49  Aligned_cols=147  Identities=13%  Similarity=0.049  Sum_probs=102.2

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCC----Ccccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTP----MPFCSQVENFVQT  117 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~~  117 (250)
                      +|+++|++|||||||+| ++.+.........+.+++           .+.+|||||++.....    .........+...
T Consensus         3 kI~lvG~~n~GKSTL~n-~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFN-ALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            69999999999999999 888753222222233322           5789999998743211    1001111112211


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      .++|++|+|+|.++.+++..+..|+.+       .++|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~~~l~~-------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLTSQLFE-------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIG  153 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHHHHHTT-------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBS
T ss_pred             CCCCEEEEEeeCCCchhHHHHHHHHHH-------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCC
Confidence            289999999999998776655444332       3789999999999865443322 24557888899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy5810         198 TDELLVGIARQ  208 (250)
Q Consensus       198 I~~lf~~l~~~  208 (250)
                      ++++|.++.+.
T Consensus       154 i~el~~~i~~~  164 (256)
T 3iby_A          154 IPALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.85  E-value=4.6e-22  Score=169.07  Aligned_cols=152  Identities=12%  Similarity=0.046  Sum_probs=105.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccC--CCc-cc-ccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLT--PMP-FC-SQVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~--~~~-~~-~~~~~~~  115 (250)
                      .++|+++|++|||||||+| ++++.........+.+++           .+.+|||+|++....  ..+ .. .....+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin-~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFN-QLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHH-HHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHH-HHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            4679999999999999999 888753222222222222           678999999874321  111 00 0111122


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      ...++|++|+|+|.++.+++..+..|+.+.       ++|+++|+||+|+.+.+.+.. ....+++.++++++++||++|
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGG
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCC
Confidence            223899999999999977665554444433       689999999999865444322 256778888999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy5810         196 YKTDELLVGIARQAGL  211 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~  211 (250)
                      .|++++|.++.+.+..
T Consensus       154 ~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          154 RGIEALKLAIDRYKAN  169 (274)
T ss_dssp             HHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999876653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=1.6e-20  Score=165.34  Aligned_cols=159  Identities=11%  Similarity=0.055  Sum_probs=111.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCccccCCCcccccccccccc-
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCLTPMPFCSQVENFVQT-  117 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~-  117 (250)
                      ..++|+++|.+|||||||++ ++.+......    .+.+..+.       .+.+|||+|..................+. 
T Consensus       166 ~~~~v~lvG~~gvGKSTLin-~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLK-ALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHH-HHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            34579999999999999998 8887421111    11111222       47899999986321111000000000011 


Q ss_pred             CCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         118 YHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      ..+|++++|+|++++.  +++....|+..+....  .+.|+++|+||+|+.....+  +++.+++...+++++++||++|
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCC
Confidence            1689999999999987  7888888999887653  27999999999998654332  4566777788899999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q psy5810         196 YKTDELLVGIARQAGLNK  213 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~  213 (250)
                      +|++++|+++.+.+....
T Consensus       321 ~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999886543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=1.9e-21  Score=170.62  Aligned_cols=114  Identities=11%  Similarity=0.089  Sum_probs=97.6

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+.+|||+||+  +.+|..+|+          +++++|+|||+++          ..+|++...|+..+.......++|+
T Consensus       194 ~l~iwDt~GQe~~r~~w~~yf~----------~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          194 HFKMFDVGGQRSERKKWIHCFE----------GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEEEECCSGGGGGGGGGGCT----------TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             eEEEEeCCCchhhhHHHHHHHh----------cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            56789999996  789999999          9999999999999          5679999999999976544568999


Q ss_pred             EEEeeCCCccCCC---------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         157 ILVANKADLERRR---------------QVTHSDGKKLAY-----------AWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +|+|||+|+.+.+               .++.+++.+++.           ..++.+++|||+++.||.++|.++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985322               367889999887           35677999999999999999999999887


Q ss_pred             hh
Q psy5810         211 LN  212 (250)
Q Consensus       211 ~~  212 (250)
                      +.
T Consensus       344 ~~  345 (353)
T 1cip_A          344 KN  345 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.84  E-value=3.6e-21  Score=163.13  Aligned_cols=154  Identities=18%  Similarity=0.042  Sum_probs=105.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~  119 (250)
                      .+||+++|++|||||||++ ++++.........+.++.           .+.+|||+|++..............+....+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n-~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFN-ALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHH-HHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHH-HHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            3679999999999999998 888742222222222222           5789999998743221111111111221227


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|++++|+|.++.+.   ...|...+...   ..+|+++|+||+|+.+.+.+..+ ...+++.++++++++||++|.|+.
T Consensus        82 ~d~vi~v~D~~~~~~---~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           82 ADVIVDIVDSTCLMR---NLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CSEEEEEEEGGGHHH---HHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CcEEEEEecCCcchh---hHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            999999999998642   33444445432   23899999999998543333332 677888899999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy5810         200 ELLVGIARQAGLN  212 (250)
Q Consensus       200 ~lf~~l~~~i~~~  212 (250)
                      ++|..+...+...
T Consensus       155 ~l~~~i~~~~~~~  167 (271)
T 3k53_A          155 ELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887643

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.83  E-value=5.8e-21  Score=165.45  Aligned_cols=115  Identities=11%  Similarity=0.085  Sum_probs=97.3

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+++|||+||+  +.+|..||+          +++++|+|||++          +..+|++...|+..+.......++|+
T Consensus       168 ~l~iwDtgGQe~~R~~w~~yf~----------~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i  237 (327)
T 3ohm_A          168 IFRMVDVGGQRSERRKWIHCFE----------NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV  237 (327)
T ss_dssp             EEEEEEECCSHHHHTTGGGGCS----------SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred             eeEEEEcCCchhHHHHHHHHhC----------CCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence            56799999997  789999999          999999999654          67889998899999877655578999


Q ss_pred             EEEeeCCCccCCC----------------ccCHHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         157 ILVANKADLERRR----------------QVTHSDGKKLAY----------AWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       157 ilv~nK~Dl~~~~----------------~v~~~~~~~~~~----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +|+|||+|+.+++                .++.+++.+++.          ..++.+++|||+++.||.++|..+.+.++
T Consensus       238 iL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          238 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            9999999985433                478888988843          34567899999999999999999999888


Q ss_pred             hhh
Q psy5810         211 LNK  213 (250)
Q Consensus       211 ~~~  213 (250)
                      +..
T Consensus       318 ~~~  320 (327)
T 3ohm_A          318 QLN  320 (327)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.83  E-value=1.6e-20  Score=170.71  Aligned_cols=152  Identities=12%  Similarity=0.049  Sum_probs=91.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccc-cCce-----------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY-HPDV-----------FFIVYSDTNHTQRC--LTPMPFCSQVENFV  115 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~-~~~~-----------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~  115 (250)
                      +.+||+|+|.+|||||||+| +|.+....+...+ +.+.           ..+.+|||+|+.+.  ....+  .......
T Consensus       232 ~~~kV~ivG~~nvGKSSLln-~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~  308 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLN-TLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRM  308 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHH-HCC------------------CEEEEETTEEEEEEC----------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHh
Confidence            45789999999999999999 7887422222221 1111           16789999998631  11110  0000011


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      .++.+|++++|+|.+++.+++.+..+...+...   .+.|+++|+||+|+.+...+.   ...+.+....+++++||++|
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg  382 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNG  382 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCC
Confidence            122899999999999998886443333322221   279999999999997654432   23344432468999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5810         196 YKTDELLVGIARQAG  210 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~  210 (250)
                      .||+++|+++.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999886

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.83  E-value=5.8e-21  Score=172.33  Aligned_cols=158  Identities=13%  Similarity=0.047  Sum_probs=107.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCccccC-C---Ccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCLT-P---MPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~~-~---~~~~~~~~~  113 (250)
                      ..+||+++|++|||||||+| ++++........ .+.+.           ..+.+|||+|+.+... .   ..|.. ...
T Consensus       174 ~~~ki~lvG~~nvGKSSLin-~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~-~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVN-AMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV-LRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHH-HHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH-HHH
T ss_pred             cCcEEEEEcCCCCCHHHHHH-HHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH-HHH
Confidence            45889999999999999999 788742211111 11111           1678999999742211 0   11110 000


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HH----hCCeEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YA----WGVKFV  188 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~  188 (250)
                      ...++.+|++++|+|++++.++++. .|+..+..    .+.|+++|+||+|+.+.+.++.++..+.. +.    .+++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            0111279999999999999888876 57776643    57999999999999765555544443332 22    367899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      ++||++|.|++++|..+.+.+.....
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999988765443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=1.2e-20  Score=171.27  Aligned_cols=162  Identities=14%  Similarity=0.067  Sum_probs=109.6

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCcccc----CCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCL----TPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~----~~~~~~~~~~  112 (250)
                      ...+||+++|++|||||||++ ++.+........ .+.+.           ..+.+|||+|..+.-    ....|... .
T Consensus       193 ~~~~ki~ivG~~~vGKSslin-~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVN-AMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL-R  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHH-HHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH-H
T ss_pred             cccceeEEecCCCCCHHHHHH-HHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH-H
Confidence            356789999999999999999 787642111111 11111           167899999943111    01111100 0


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-----CCeE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-----GVKF  187 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~  187 (250)
                      ....++.+|++|+|+|.++..+.. ...|+..+..    .+.|+++|+||+|+.+.+.++.+++.+.++..     ++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            000112799999999999864432 3445555533    57999999999999876777778888777765     5789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLNKKRNK  217 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~~~~~~  217 (250)
                      +++||++|.||+++|.++.+.+........
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~  375 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ  375 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999988876554433

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.82  E-value=5.7e-21  Score=156.37  Aligned_cols=158  Identities=11%  Similarity=-0.047  Sum_probs=98.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc--cccccccCce------------eEEEEEeCCCCccccCCC----cccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE--NFVQTYHPDV------------FFIVYSDTNHTQRCLTPM----PFCSQV  111 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~--~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~----~~~~~~  111 (250)
                      ..++|+|+|.+|||||||++ ++++...  ....+.+.+.            ..+.+|||+|........    .+....
T Consensus        28 ~~~~i~v~G~~~~GKSslin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAIN-VLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHH-HHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHH-HHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            45679999999999999999 7877421  1122222221            157799999953211000    001111


Q ss_pred             cccc-ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC--HHHHHHHHHH------
Q psy5810         112 ENFV-QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT--HSDGKKLAYA------  182 (250)
Q Consensus       112 ~~~~-~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~------  182 (250)
                      ..+. ....+|++++|+|.++..+.. ...|+..+..    .++|+++|+||+|+...+.+.  .++..+....      
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            1111 112589999999999864422 2345555533    578999999999986533321  1222223333      


Q ss_pred             -hCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         183 -WGVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       183 -~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                       .+.+++++||++|.|++++|++|.+.+....
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence             4567999999999999999999998876543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=1.7e-20  Score=164.51  Aligned_cols=113  Identities=9%  Similarity=0.046  Sum_probs=92.7

Q ss_pred             EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810          90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAVI  157 (250)
Q Consensus        90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pii  157 (250)
                      +++|||+||+  +.+|..||+          +++++|+|||++          +..+|+++..|+..+.......++|++
T Consensus       185 l~iwDtaGQe~~r~~~~~y~~----------~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii  254 (354)
T 2xtz_A          185 YRLFDVGGQRNERRKWIHLFE----------GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  254 (354)
T ss_dssp             EEEEEECCSTTGGGGTGGGCT----------TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred             eEEEECCCchhhhHHHHHHhC----------CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE
Confidence            6789999997  789999999          999999999998          788999999999999765445789999


Q ss_pred             EEeeCCCccCCCc--c-------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCCHHH
Q psy5810         158 LVANKADLERRRQ--V-------------------THSDGKKLAYA----------------WGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       158 lv~nK~Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~evSa~~~~~I~~  200 (250)
                      |||||+|+.+++.  +                   +.+++.+++..                ..+.+++|||+++.||.+
T Consensus       255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~  334 (354)
T 2xtz_A          255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKK  334 (354)
T ss_dssp             EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHH
T ss_pred             EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHH
Confidence            9999999853221  1                   25677777543                123468999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy5810         201 LLVGIARQAGLN  212 (250)
Q Consensus       201 lf~~l~~~i~~~  212 (250)
                      +|.++.+.+.+.
T Consensus       335 vF~~v~~~I~~~  346 (354)
T 2xtz_A          335 TFKLVDETLRRR  346 (354)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.82  E-value=2.3e-20  Score=160.59  Aligned_cols=153  Identities=14%  Similarity=0.068  Sum_probs=99.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCc-----------eeEEEEEeCCCCccccCC--Ccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPD-----------VFFIVYSDTNHTQRCLTP--MPFCSQVEN  113 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~-----------~~~i~i~Dt~g~~~~~~~--~~~~~~~~~  113 (250)
                      .++..+|+|+|.+|||||||+| ++++...... ...+.+           -..+.+|||+|.......  .++...  .
T Consensus         4 ~~~~g~V~ivG~~nvGKSTLln-~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~--~   80 (301)
T 1wf3_A            4 KTYSGFVAIVGKPNVGKSTLLN-NLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQE--V   80 (301)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHH-HHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHH--H
T ss_pred             CccCCEEEEECCCCCCHHHHHH-HHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHH--H
Confidence            3566789999999999999999 7887421111 111111           116789999998642110  001100  1


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHH-HHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-C-CeEEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDML-KTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-G-VKFVET  190 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~-~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~ev  190 (250)
                      ...++++|++++|+|++++.+..  ..|+ ..+.+.  ..+.|+++|+||+|+.+...    +..+.++.+ + .+++++
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~i  152 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRML  152 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEEC
T ss_pred             HHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEE
Confidence            11223899999999999875544  3454 444332  24799999999999865322    022333332 3 468999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHh
Q psy5810         191 SVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ||++|.|++++|+.+.+.+..
T Consensus       153 SA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          153 SALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCB
T ss_pred             eCCCCCCHHHHHHHHHHhccc
Confidence            999999999999999987643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.81  E-value=1e-20  Score=165.34  Aligned_cols=148  Identities=18%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENF  114 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~  114 (250)
                      +|+|+|.+|||||||++ ++++....    ...|..+++.        .+.+|||+|...      .+...+++    . 
T Consensus       160 ~V~lvG~~nvGKSTLln-~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~----~-  233 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLS-VVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLR----H-  233 (342)
T ss_dssp             CEEEESSTTSSHHHHHH-HSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHH----H-
T ss_pred             eeeeeCCCCCCHHHHHH-HHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHH----H-
Confidence            38899999999999998 78774211    1234444432        578999999642      22223322    1 


Q ss_pred             cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEE
Q psy5810         115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFV  188 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~  188 (250)
                        +..++++|+|+|+++   +.+++++..|+.++..+.. ..+.|+++|+||+|+...    .+...++++.++  .+++
T Consensus       234 --i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~  307 (342)
T 1lnz_A          234 --IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVF  307 (342)
T ss_dssp             --HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBC
T ss_pred             --HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEE
Confidence              114899999999999   7899999999999976532 257999999999998642    244666777776  6899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ++||+++.|++++|.+|.+.+.+.
T Consensus       308 ~iSA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          308 PISAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             EEECCCCcCHHHHHHHHHHHHhhC
Confidence            999999999999999999887654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.81  E-value=5.5e-20  Score=161.80  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+.+|||+||+  +.+|..+|+          +++++|+|||+++          ..+|++...|+..+.......++|+
T Consensus       202 ~l~i~Dt~Gq~~~r~~w~~~f~----------~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          202 PFKMVDVGGQRSERKRWFECFD----------SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEEEECC-------CTTSCT----------TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEEEeccchhhhhhhHHHHhC----------CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            46789999996  788999999          9999999999999          7899999999999976544568999


Q ss_pred             EEEeeCCCccCCC----------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         157 ILVANKADLERRR----------------QVTHSDGKKLAY-----------AWGVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       157 ilv~nK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                      ||++||+|+.+++                .++.+++..++.           ..++.+++|||+++.||.++|.++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999985322                367888888762           3457789999999999999999999988


Q ss_pred             Hhhh
Q psy5810         210 GLNK  213 (250)
Q Consensus       210 ~~~~  213 (250)
                      .+..
T Consensus       352 ~~~~  355 (362)
T 1zcb_A          352 LHDN  355 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.81  E-value=6.5e-20  Score=166.90  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=100.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccccccc-Cce-----------eEEEEEeCCCCc-cccCCCccccccccccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDV-----------FFIVYSDTNHTQ-RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~-----------~~i~i~Dt~g~~-~~~~~~~~~~~~~~~~~~~  118 (250)
                      ++|+|+|.+|||||||+| ++++........+. .+.           ..+.+|||+|+. .................++
T Consensus       244 ~kV~ivG~pnvGKSSLln-~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~  322 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLN-RLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE  322 (482)
T ss_dssp             EEEEEECCHHHHTCHHHH-HHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHH-HHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence            789999999999999999 78774222222221 111           167899999986 3211100000000011112


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+|++|+|+|++++.++++.. +++.+      .+.|+++|+||+|+.+.  ++.++..+++. .+++++++||++|.||
T Consensus       323 ~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi  392 (482)
T 1xzp_A          323 KADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL  392 (482)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred             cccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence            799999999999998887643 33332      37899999999999652  44555555432 3468999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy5810         199 DELLVGIARQAGL  211 (250)
Q Consensus       199 ~~lf~~l~~~i~~  211 (250)
                      +++|++|.+.+..
T Consensus       393 ~eL~~~l~~~~~~  405 (482)
T 1xzp_A          393 EKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=5.5e-20  Score=166.05  Aligned_cols=174  Identities=15%  Similarity=0.089  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~  119 (250)
                      +|+|+|++|||||||+| +|++.... ..++.+.+..           .+.+|||+|++......+...+.+ ....+++
T Consensus         3 ~v~ivG~pnvGKStL~n-rl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFN-KLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            69999999999999999 88874322 2223232221           678999999873211111110111 0111238


Q ss_pred             CcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHHHHhCC-eEEEEecCCC
Q psy5810         120 PDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLAYAWGV-KFVETSVGLV  195 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~evSa~~~  195 (250)
                      ||++++|+|.++..++.+  +..|+..       .++|+++|+||+|+...  . ..+. .++. .+++ +++++||++|
T Consensus        82 ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence            999999999988655443  3334332       36899999999998531  1 1223 3443 4576 6899999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhh-hh---H--------HHHHhhhhhhhhhhhhccCC
Q psy5810         196 YKTDELLVGIARQAGLNKKR-NK---L--------LAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~-~~---~--------~~~~~~~~~~~~~~~~~~~~  238 (250)
                      .|+.++|+++...+...... ..   .        -.......+++++.+.+...
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcc
Confidence            99999999999888643211 00   0        01112466778888877653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.80  E-value=5.1e-20  Score=164.99  Aligned_cols=150  Identities=13%  Similarity=0.052  Sum_probs=103.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCce------------eEEEEEeCCCCcc--ccCCCcccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDV------------FFIVYSDTNHTQR--CLTPMPFCSQVEN  113 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~------------~~i~i~Dt~g~~~--~~~~~~~~~~~~~  113 (250)
                      ...++|+|+|..|+|||||++ ++++.... .....+.+.            ..+.+|||+|+..  .+.......... 
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin-~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~-  109 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMN-ALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR-  109 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTT-SSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH-
T ss_pred             CCCEEEEEECCCCCCHHHHHH-HHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH-
Confidence            456789999999999999998 78874211 111111111            1688999999863  222221111111 


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                        .++++|++|+|+|++..+.   ...|+..+.+.    ++|+++|+||+|+...+..  +.+.++++.++++++++||+
T Consensus       110 --~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          110 --VFYRADCGILVTDSAPTPY---EDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             --HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             --HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence              1127999999999944333   35677766543    7899999999999765544  56677777888999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.|++++|+++.+.+.+
T Consensus       179 tg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHhhhh
Confidence            999999999999998843

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.80  E-value=8.2e-20  Score=158.85  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+++|||+||+  +.+|..||+          +++++|+|||++          +..+|++...|+..+.......++|+
T Consensus       162 ~l~iwDtaGQe~~R~~w~~yy~----------~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi  231 (340)
T 4fid_A          162 PFHLIDVGGQRSERKXWVSFFS----------DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK  231 (340)
T ss_dssp             EEEEEECCSCHHHHHHHHTTSC----------SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred             eeccccCCCcccccccHHHHhc----------cCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence            56899999997  789999999          999999999999          78899999999999987665678999


Q ss_pred             EEEeeCCCccCCC---------------ccCHHHHHHHHHH-h--------------------------CCeEEEEecCC
Q psy5810         157 ILVANKADLERRR---------------QVTHSDGKKLAYA-W--------------------------GVKFVETSVGL  194 (250)
Q Consensus       157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~evSa~~  194 (250)
                      +|+|||+|+.+++               ..+.+++.+++.. +                          ++.++++||++
T Consensus       232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d  311 (340)
T 4fid_A          232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD  311 (340)
T ss_dssp             EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred             EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence            9999999984321               1246677666533 2                          35688999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      +.||..+|..+.+.+++
T Consensus       312 t~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          312 GSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999999886

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.79  E-value=1.8e-19  Score=163.30  Aligned_cols=150  Identities=14%  Similarity=0.101  Sum_probs=94.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRC--LTPMPFCSQVENFV  115 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~  115 (250)
                      ..+||+|+|.+|||||||+| +|++....+...+..+.            ..+.+|||+|....  .....  .......
T Consensus       223 ~~~kV~ivG~~nvGKSSLln-~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLN-AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHH-HHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHH-HHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhh
Confidence            45789999999999999999 78774222222222111            16789999997421  11110  0000111


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                      .++.+|++++|+|.+++.++.. ..|+..+      .+.|+++|+||+|+.+...+.  ....+.  .+.+++++||++|
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg  368 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK  368 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence            1228999999999999877655 4566655      247999999999996544432  111111  3567999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q psy5810         196 YKTDELLVGIARQAGLNK  213 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~  213 (250)
                      .|++++|+++.+.+....
T Consensus       369 ~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          369 QGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BSHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHhccC
Confidence            999999999999886543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=4.1e-18  Score=153.80  Aligned_cols=156  Identities=17%  Similarity=0.087  Sum_probs=99.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc-ccc----Cce-------eEEEEEeCCCCccccCC-----Cccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYH----PDV-------FFIVYSDTNHTQRCLTP-----MPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~----~~~-------~~i~i~Dt~g~~~~~~~-----~~~~~~~~  112 (250)
                      ..+||+|+|++|||||||+| ++++....... ..+    +..       ..+.+|||+|+.+....     ..+. ...
T Consensus       179 ~~~kvaivG~~gvGKSTLln-~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~-~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFN-AILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS-NYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHH-HHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC-CHH
T ss_pred             cCceEEEECCCCCCHHHHHH-HHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH-HHH
Confidence            45889999999999999998 78774211111 111    111       16789999998522110     1111 111


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HHHH----hCCeE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LAYA----WGVKF  187 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----~~~~~  187 (250)
                      ....++.+|++++|+|.++..++++. .+...+..    .+.|+++|+||+|+.+.+..+.++..+ +...    .+.++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence            11122268999999999987776553 23332322    578999999999986644444444432 2232    35789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +++||++|.|++++|+.+.+.+...
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999876554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.76  E-value=1.5e-19  Score=163.07  Aligned_cols=174  Identities=14%  Similarity=0.027  Sum_probs=99.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCC--cccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQT  117 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~  117 (250)
                      .+|+|+|++|||||||+| ++++.... ..++.+.+..           .+.+|||+|++......  .+......+  +
T Consensus         4 ~~V~ivG~~nvGKStL~n-~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~--~   80 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFN-RIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA--M   80 (436)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH--H
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH--H
Confidence            469999999999999999 88874221 2333343322           57799999986211110  011111111  1


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVY  196 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~  196 (250)
                      ++||++|+|+|.+++.++.+  .|+.++.+   ..+.|++||+||+|+...+.    +..++. ..++ +++++||++|.
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~  150 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGL  150 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTB
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCC
Confidence            27999999999998777654  34444332   25789999999999854221    111222 3455 68999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhHH--------HHHhhhhhhhhhhhhccCC
Q psy5810         197 KTDELLVGIARQAGLNKKRNKLL--------AKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  238 (250)
                      |+.++++++.+.+.+........        .....+.+++++++.+...
T Consensus       151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~  200 (436)
T 2hjg_A          151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER  200 (436)
T ss_dssp             THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            99999999998776432110000        0011356778888877654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.76  E-value=3.9e-18  Score=146.71  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=100.3

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCc-cc----------cCCC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQ-RC----------LTPM  105 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~-~~----------~~~~  105 (250)
                      ++..+|+|+|.+|||||||+| ++++..... ....+.+.           ..+.+|||+|.+ ..          ....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln-~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLN-KLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHH-HHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHH-HHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            455679999999999999999 788742111 11111111           157789999986 21          1222


Q ss_pred             ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC
Q psy5810         106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV  185 (250)
Q Consensus       106 ~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~  185 (250)
                      ++.          .+|++++|+|.++   +.....|+.+...   ..+.|+++++||+|+...+....+....+++.+++
T Consensus        85 ~l~----------~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           85 SIG----------DVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF  148 (301)
T ss_dssp             CCC----------CEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred             HHh----------cCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence            333          8999999999987   3333445544332   25789999999999865222233445556666676


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         186 -KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       186 -~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                       .++++||+++.|+.++++.+...+..
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence             69999999999999999999976654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.76  E-value=6.8e-18  Score=148.70  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=103.0

Q ss_pred             EE-EEEEcCCCCchhhhchhhhcccccc----ccccccCcee-------EEEEEeCCCCccccCCCc---cccccccccc
Q psy5810          52 VF-FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF-------FIVYSDTNHTQRCLTPMP---FCSQVENFVQ  116 (250)
Q Consensus        52 ~k-i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~-------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~  116 (250)
                      ++ |+|+|.+|||||||+| ++++....    ...|.+++..       .+.+|||+|....+....   ++...+.   
T Consensus       179 ~~~V~lvG~~naGKSTLln-~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~---  254 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFN-SLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE---  254 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHH-HHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG---
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH---
Confidence            44 9999999999999998 78874221    1223233322       577899999743322211   2222222   


Q ss_pred             cCCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHHHh---CCeEEEE
Q psy5810         117 TYHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAYAW---GVKFVET  190 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~---~~~~~ev  190 (250)
                      +..+|++++|+|++++.  +++.+..|...+.. ....+.|+++|+||+|+.+.... ..+.+..++..+   +.+++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            23799999999999987  66666666555433 24467899999999998643210 012233344555   2368999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         191 SVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ||+++.|++++++++.+.+....
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHHHhcccC
Confidence            99999999999999998776543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=8.1e-19  Score=140.25  Aligned_cols=113  Identities=10%  Similarity=0.095  Sum_probs=79.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee------EEEEEeCCCCcc--ccCCCccccccccccccC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF------FIVYSDTNHTQR--CLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~  118 (250)
                      ..++|+++|++|||||||++ ++.+.  .+..   ++.++..      .+.+|||+|++.  ..+..++....      .
T Consensus        47 ~~~~i~vvG~~g~GKSsll~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~------~  117 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLT-LLTTD--SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA------K  117 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHH-HHHHS--SCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG------G
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhcC--CCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhc------c
Confidence            44679999999999999998 78773  2221   2222222      567899999863  33333333100      1


Q ss_pred             CCcEEEEEEeCC-CHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCcc
Q psy5810         119 HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQV  171 (250)
Q Consensus       119 ~ad~iilV~D~~-~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v  171 (250)
                      .+|++|+|||++ ++.+|+.+..|+..+....   ...++|+++|+||+|+.+.+.+
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            389999999999 8999999999988886543   2358999999999999765543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.75  E-value=3e-18  Score=153.12  Aligned_cols=148  Identities=16%  Similarity=0.112  Sum_probs=101.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-cc---c-cccc---------------------cC-----ceeEEEEEeCCCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-EN---F-VQTY---------------------HP-----DVFFIVYSDTNHT   98 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~---~-~~~~---------------------~~-----~~~~i~i~Dt~g~   98 (250)
                      ..++|+++|.+|+|||||++ ++++.. ..   + ..+.                     ..     ....+.+|||+|+
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQ-AITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHH-HHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            44679999999999999998 787620 00   0 0000                     00     0137889999997


Q ss_pred             cccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHH
Q psy5810          99 QRCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THS  174 (250)
Q Consensus        99 ~~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~  174 (250)
                      +...  ...++.          .+|++++|+|.++..++....+|+..+...   ...|+++|+||+|+.+....  ..+
T Consensus        86 ~~~~~~~~~~~~----------~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~  152 (403)
T 3sjy_A           86 EVLMATMLSGAA----------LMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYR  152 (403)
T ss_dssp             GGGHHHHHHHHT----------TCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----------hCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHH
Confidence            6321  222233          799999999999987777888887766443   23589999999998642211  112


Q ss_pred             HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         175 DGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       175 ~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +..++....   +++++++||++|.|++++++.|.+.+..
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            222333222   5689999999999999999999986643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.73  E-value=1.1e-17  Score=140.41  Aligned_cols=159  Identities=15%  Similarity=0.112  Sum_probs=96.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-------e-------eEEEEEeCCCCccccCCC--cccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-------V-------FFIVYSDTNHTQRCLTPM--PFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-------~-------~~i~i~Dt~g~~~~~~~~--~~~~~~~~  113 (250)
                      ..++|+|+|.+|||||||++ ++++.. .+...+.++       .       ..+.+|||+|........  +.......
T Consensus        21 ~~~~I~lvG~~g~GKStl~n-~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGN-SILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHH-HHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            45779999999999999999 787642 122222211       1       168899999986322111  00000000


Q ss_pred             -ccccCCCcEEEEEEeCCCHHhH-HHHHHHHHHHHhhhCCCCCcEEEEee-CCCccCCCccCH-------HHHHHHHHHh
Q psy5810         114 -FVQTYHPDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVAN-KADLERRRQVTH-------SDGKKLAYAW  183 (250)
Q Consensus       114 -~~~~~~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~~~~~~piilv~n-K~Dl~~~~~v~~-------~~~~~~~~~~  183 (250)
                       ...++++|++|+|+|+++.... ..+..|+.++...  ....|.++|.| |+|+... .+..       +++..++...
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence             0122389999999999872222 2233444443211  11345555555 9999743 2322       3355566666


Q ss_pred             CCe---E--EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         184 GVK---F--VETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       184 ~~~---~--~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +..   +  +++||+++.|+.++|.++.+.+....
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            543   2  78999999999999999999887643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.73  E-value=7.5e-18  Score=139.86  Aligned_cols=161  Identities=11%  Similarity=0.038  Sum_probs=93.3

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccc--cCce-----------eEEEEEeCCCCccccCC-C-ccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--HPDV-----------FFIVYSDTNHTQRCLTP-M-PFCSQVE  112 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--~~~~-----------~~i~i~Dt~g~~~~~~~-~-~~~~~~~  112 (250)
                      ....++|+|+|.+|||||||++ ++++.........  +.+.           ..+.+|||+|....... . .......
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin-~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGN-SILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHH-HHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHH-HHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            3456889999999999999999 7887422111100  1111           16789999995421100 0 0000000


Q ss_pred             cc-cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhC
Q psy5810         113 NF-VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVT------HSDGKKLAYAWG  184 (250)
Q Consensus       113 ~~-~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~  184 (250)
                      .+ ...+++|++|+|+|+++...-  ...|+..+.+... ....|+++|+||+|+...+.+.      .+....+++.++
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            00 011278999999999764331  1233333322111 1246999999999986544443      245778888899


Q ss_pred             CeEEEEecCCC-----CCHHHHHHHHHHHHHh
Q psy5810         185 VKFVETSVGLV-----YKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~~~~evSa~~~-----~~I~~lf~~l~~~i~~  211 (250)
                      ..|+.+++..+     .++.++|..+...+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888877754     6889999888776654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.71  E-value=2.2e-17  Score=150.62  Aligned_cols=146  Identities=15%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             cccccEEEEEEEcCCCCchhhhchhhhcccc-----cccc--ccccCce-----------eEEEEEeCCCCccc--cCCC
Q psy5810          46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQV-----ENFV--QTYHPDV-----------FFIVYSDTNHTQRC--LTPM  105 (250)
Q Consensus        46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~~--~~~~~~~-----------~~i~i~Dt~g~~~~--~~~~  105 (250)
                      ....+.++|+++|..++|||||++ ++.+..     +.+.  ...+.++           ..+.+|||+|++..  ....
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~-~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSK-VLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHH-HHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHH-HHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence            334567889999999999999998 787642     0011  1111121           26889999998632  1122


Q ss_pred             ccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHH
Q psy5810         106 PFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLA  180 (250)
Q Consensus       106 ~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~  180 (250)
                      ++.          .+|++|+|+|.++   +++++.+.    .+..    .++|+++|+||+|+.+..  ....++..+++
T Consensus        93 ~~~----------~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l  154 (482)
T 1wb1_A           93 AAD----------IIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL  154 (482)
T ss_dssp             HTT----------SCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHh----------hCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHH
Confidence            233          7999999999998   56665543    2211    368889999999986421  12234455566


Q ss_pred             HHh----CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         181 YAW----GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       181 ~~~----~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +..    +++++++||++|.|+.+++++|.+.+.
T Consensus       155 ~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          155 QSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            555    578999999999999999999998775

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.71  E-value=8.9e-18  Score=153.33  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=85.9

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce----------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV----------   87 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~----------   87 (250)
                      ...+||+++|.+|+|||||++ +|+.....+..                               ..|.++          
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMG-RLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHH-HHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCceEEEEECCCCCCHHHHHH-HHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            356889999999999999998 77653111111                               012222          


Q ss_pred             -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHH-----HHHHHHHHhhhCCCCCcEEEE
Q psy5810          88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA-----EDMLKTLWDSKYIGEKAVILV  159 (250)
Q Consensus        88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-----~~~~~~i~~~~~~~~~piilv  159 (250)
                       ..+.+|||+|+++.  ....++.          .+|++|+|+|+++..++..+     ..+...+...  ....|+|+|
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~----------~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvv  177 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGIS----------QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIA  177 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHT----------TCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEE
T ss_pred             CceEEEEECCCcHHHHHHHHHhhh----------hCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEE
Confidence             16889999998632  2222333          89999999999997654331     1111122221  123469999


Q ss_pred             eeCCCccCCCccCHHHHHH----HHHHh-----CCeEEEEecCCCCCHHHH
Q psy5810         160 ANKADLERRRQVTHSDGKK----LAYAW-----GVKFVETSVGLVYKTDEL  201 (250)
Q Consensus       160 ~nK~Dl~~~~~v~~~~~~~----~~~~~-----~~~~~evSa~~~~~I~~l  201 (250)
                      +||+|+.+.+....++..+    +.+..     +++++++||++|.|+.++
T Consensus       178 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          178 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             EECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            9999997644333333333    33333     357999999999999753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.70  E-value=1.7e-18  Score=147.96  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             eEEEEEeCCCCcccc----CCC---ccccccccccccCCCcEEE-EEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy5810          88 FFIVYSDTNHTQRCL----TPM---PFCSQVENFVQTYHPDVFV-IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV  159 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~----~~~---~~~~~~~~~~~~~~ad~ii-lV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv  159 (250)
                      ..+.+|||||..+.-    ...   .+......+..  .++.++ +|+|.++..+......|+..+.    ..+.|+++|
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V  198 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGV  198 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEE
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc--CCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEE
Confidence            468899999975321    111   22222222222  667665 7999988665555445655552    357899999


Q ss_pred             eeCCCccCCCccCHHHHHHHHHH--hC-CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         160 ANKADLERRRQVTHSDGKKLAYA--WG-VKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       160 ~nK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      +||+|+.+......+........  .+ .+++++||++|.|++++|+++.+.
T Consensus       199 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          199 ITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             EECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             EEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            99999865443222222210001  13 257899999999999999999874

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.70  E-value=2e-16  Score=147.22  Aligned_cols=143  Identities=15%  Similarity=0.052  Sum_probs=95.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc------cccccccCce-----------------------eEEEEEeCCCCc-
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE------NFVQTYHPDV-----------------------FFIVYSDTNHTQ-   99 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~------~~~~~~~~~~-----------------------~~i~i~Dt~g~~-   99 (250)
                      +..+|+|+|..|+|||||++ ++.+...      ....+++.+.                       ..+.+|||||++ 
T Consensus         4 r~~~V~IvGh~d~GKTTLl~-~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLD-HIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHH-HHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCcEEEEECCCCCcHHHHHH-HHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            34579999999999999998 7765311      0111111111                       148999999986 


Q ss_pred             -cccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC---
Q psy5810         100 -RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT---  172 (250)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---  172 (250)
                       ..++..++.          .+|++|+|+|+++   +++++.+..+    ..    .++|+++++||+|+.......   
T Consensus        83 F~~~~~r~~~----------~aD~aILVvDa~~Gv~~qT~e~l~~l----~~----~~vPiIVViNKiDl~~~~~~~~~~  144 (594)
T 1g7s_A           83 FTTLRKRGGA----------LADLAILIVDINEGFKPQTQEALNIL----RM----YRTPFVVAANKIDRIHGWRVHEGR  144 (594)
T ss_dssp             CTTSBCSSSB----------SCSEEEEEEETTTCCCHHHHHHHHHH----HH----TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred             HHHHHHHHHh----------hCCEEEEEEECCCCccHhHHHHHHHH----HH----cCCeEEEEecccccccccccccCC
Confidence             344444445          7999999999999   7887765422    11    478999999999985421100   


Q ss_pred             ----------H---H-------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         173 ----------H---S-------DGKKLAYAWG---------------VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       173 ----------~---~-------~~~~~~~~~~---------------~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                                .   +       +......+.+               ++++++||++|.||.++++++...+..
T Consensus       145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                      0   0       1111112222               379999999999999999999987653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=3.4e-17  Score=140.76  Aligned_cols=124  Identities=19%  Similarity=0.094  Sum_probs=99.1

Q ss_pred             hhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH
Q psy5810          66 CLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK  133 (250)
Q Consensus        66 sLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~  133 (250)
                      +|+. +|+.  +.|. ..+.++++           .+++|||...++.+++.+++          ++|++|+|||++++.
T Consensus        32 sl~~-~~~~--~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~qer~~~l~~~~~~----------~ad~vilV~D~~~~~   98 (301)
T 1u0l_A           32 ERIL-CKLR--GKFRLQNLKIYVGDRVEYTPDETGSGVIENVLHRKNLLTKPHVA----------NVDQVILVVTVKMPE   98 (301)
T ss_dssp             CEEE-EEEC--GGGTTTTCCCCTTCEEEEECCCSSSEEEEEECCCSCEETTTTEE----------SCCEEEEEECSSTTC
T ss_pred             cEEE-EEEc--ccccccCCCCCCccEEEEEEcCCCeEEEEEEccccceeeccccc----------cCCEEEEEEeCCCCC
Confidence            6886 7887  5555 44444433           46799994444788888988          999999999999997


Q ss_pred             -hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         134 -TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       134 -Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                       +|+.+..|+..+..    .++|++||+||+|+.+.+.+  +++.++++.++  ++++++||++|.||+++|..+...
T Consensus        99 ~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A           99 TSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             CCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence             79999999998754    47999999999999754443  55777888777  899999999999999999887653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=7.5e-17  Score=144.23  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc-ccccc----c--cccCc------------------------------eeEEEE
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV----Q--TYHPD------------------------------VFFIVY   92 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~----~--~~~~~------------------------------~~~i~i   92 (250)
                      ..++|+++|..++|||||++ ++.+. ...+.    .  |+...                              ...+.+
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~-~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTK-ALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHH-HHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHH-HHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45789999999999999998 78742 11111    1  11110                              146889


Q ss_pred             EeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC----HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          93 SDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        93 ~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      |||+|++.... .+..       .+..+|++|+|+|+++    +++++.+..| .   ..   ...|+++++||+|+.+.
T Consensus        86 iDtPGh~~f~~-~~~~-------~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~---~l---~~~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGHETLMA-TMLS-------GASLMDGAILVIAANEPCPQPQTKEHLMAL-E---IL---GIDKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSHHHHHH-HHHT-------TCSCCSEEEEEEETTSCSSCHHHHHHHHHH-H---HT---TCCCEEEEEECTTSSCT
T ss_pred             EECCCHHHHHH-HHHH-------hHhhCCEEEEEEECCCCCCCchhHHHHHHH-H---Hc---CCCeEEEEEEccCCCCH
Confidence            99999863221 1111       1116899999999984    5666665533 1   11   23589999999998653


Q ss_pred             Cc--cCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         169 RQ--VTHSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       169 ~~--v~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ..  ...+++.++++.   .+++++++||++|.||++++++|.+.+..
T Consensus       151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            32  234566677665   35789999999999999999999876653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.69  E-value=1.6e-18  Score=152.76  Aligned_cols=157  Identities=11%  Similarity=0.055  Sum_probs=83.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccc--------cCcee---------------EEEEEeCCCCc-------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--------HPDVF---------------FIVYSDTNHTQ-------   99 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--------~~~~~---------------~i~i~Dt~g~~-------   99 (250)
                      ..++|+|+|++|+|||||++ ++.+. ..+...+        .+++.               .+.+|||+|+.       
T Consensus        36 ~~~~I~vvG~~g~GKSTLln-~L~~~-~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLIN-SLFLT-DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHH-HHTTC-CC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCEEEEEEcCCCCCHHHHHH-HHhCC-CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            44779999999999999998 65442 2221111        11211               57899999982       


Q ss_pred             --cccCC-------Cccccccccc-cccCCCcEEEEEEeCCC-HHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810         100 --RCLTP-------MPFCSQVENF-VQTYHPDVFVIVYSVIE-RKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus       100 --~~~~~-------~~~~~~~~~~-~~~~~ad~iilV~D~~~-~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                        ..++.       .|++...... ..+.++++-+++|++++ ..++..+. .|+..+     ..++|+|+|+||+|+..
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence              12222       2222100000 01113333345566555 45565554 455544     25789999999999876


Q ss_pred             CCccCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810         168 RRQVTH--SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       168 ~~~v~~--~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      .+.+..  +++.++++.++++++++||+++.+ .+.|.++.+.+....+
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            555544  567777888899999999999999 8999999888866443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.69  E-value=2.8e-17  Score=145.94  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810          89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV  156 (250)
Q Consensus        89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi  156 (250)
                      .+++|||+||+  +.+|..||+          +++++|+|||+++          ..+|+++..|+..+.......++|+
T Consensus       218 ~l~iwDtaGQe~~r~~w~~yf~----------~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          218 NFHMFDVGGQRDERRKWIQCFN----------DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEEEECCSGGGGGGGGGGTT----------TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             cceecccchhhhhhhhhHhhcc----------CCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            46789999997  789999999          9999999999999          8999999999999977655578999


Q ss_pred             EEEeeCCCccCCCc---c---------------------------CHHHHHHHHH-----H--------hCCeEEEEecC
Q psy5810         157 ILVANKADLERRRQ---V---------------------------THSDGKKLAY-----A--------WGVKFVETSVG  193 (250)
Q Consensus       157 ilv~nK~Dl~~~~~---v---------------------------~~~~~~~~~~-----~--------~~~~~~evSa~  193 (250)
                      +|||||+|+...+.   +                           +.+++..|+.     .        .++.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854332   2                           1456666642     2        24557899999


Q ss_pred             CCCCHHHHHHHHHHHHHhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++.||.++|.++...+.+..
T Consensus       368 d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHH
Confidence            99999999999988776543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.68  E-value=5.2e-18  Score=155.81  Aligned_cols=141  Identities=12%  Similarity=0.057  Sum_probs=94.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc----cccC----------ceeEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHP----------DVFFIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~----------~~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      .+|+++|.+|+|||||++ +|.+.  .+..    ++..          .-..+.+|||||++  ..+...++.       
T Consensus         5 pkV~IvG~~~vGKTSLl~-~L~~~--~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~-------   74 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLD-KLRKT--QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQ-------   74 (537)
T ss_dssp             CBCEEEESTTTTHHHHHH-HHHHH--HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSB-------
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCC--CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHc-------
Confidence            459999999999999998 77753  1111    1000          01157899999986  444455555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHHHH---HHHh--CCeEEE
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGKKL---AYAW--GVKFVE  189 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~---~~~~--~~~~~e  189 (250)
                         .+|++|+|+|+++....+....| ..+.    ..++|+++++||+|+.+... ....+...+   +..+  .+++++
T Consensus        75 ---~aD~vILVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~  146 (537)
T 3izy_P           75 ---VTDIVILVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVH  146 (537)
T ss_dssp             ---SBSSCEEECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECC
T ss_pred             ---cCCEEEEEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEE
Confidence               89999999999996655544433 2232    24789999999999864221 111111111   1122  247999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q psy5810         190 TSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +||++|.|++++|+++...+.
T Consensus       147 vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          147 VSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CCSSSSCSSHHHHHHHHHHHT
T ss_pred             EECCCCCCchhHHHHHHHhhh
Confidence            999999999999999997764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=7.5e-17  Score=150.09  Aligned_cols=144  Identities=12%  Similarity=0.095  Sum_probs=98.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccc---------ccc------cccCce----------------eEEEEEeCCCCc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQ------TYHPDV----------------FFIVYSDTNHTQ   99 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~------~~~~~~----------------~~i~i~Dt~g~~   99 (250)
                      ..+|+|+|..++|||||++ +++.....         +.+      +.|.++                ..+.+|||+|+.
T Consensus         4 irnI~IiGh~d~GKTTLi~-rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSD-RIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             EEEEEEECCC----CCHHH-HHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CeEEEEECCCCCCHHHHHH-HHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4569999999999999998 77652111         111      111111                257799999986


Q ss_pred             c--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH
Q psy5810         100 R--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK  177 (250)
Q Consensus       100 ~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  177 (250)
                      .  ..+..++.          .+|++|+|+|.++..+++....|.....     .++|+++|+||+|+.+..  ..+...
T Consensus        83 dF~~ev~~~l~----------~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~  145 (599)
T 3cb4_D           83 DFSYEVSRSLA----------ACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAE  145 (599)
T ss_dssp             GGHHHHHHHHH----------HCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred             HHHHHHHHHHH----------HCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHH
Confidence            3  22222333          7999999999999888877777766542     478999999999996533  233455


Q ss_pred             HHHHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         178 KLAYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       178 ~~~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ++.+.+++.   ++++||++|.||+++|+++.+.+...
T Consensus       146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            666777764   89999999999999999999877643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.68  E-value=1.4e-17  Score=150.12  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=93.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce-----------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV-----------   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~-----------   87 (250)
                      ..++|+++|..|+|||||++ +|+.....+..                               ..+.++           
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVG-RLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHH-HHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CEEEEEEEeCCCCCHHHHHH-HHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45789999999999999998 77653111110                               011222           


Q ss_pred             eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh---CCCCC-cEEEEee
Q psy5810          88 FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEK-AVILVAN  161 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~---~~~~~-piilv~n  161 (250)
                      ..+.+|||+|+++.  ....++.          .+|++|+|+|+++ .+|+.+..|..+..++.   ...++ |+++++|
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~----------~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN  152 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGAS----------QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN  152 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSS----------CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             eEEEEEECCCcHHHHHHHHhhhh----------hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence            16889999998732  2223344          8999999999999 78886544333222211   11244 6899999


Q ss_pred             CCCccCCC------ccCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy5810         162 KADLERRR------QVTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       162 K~Dl~~~~------~v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf~  203 (250)
                      |+|+.+..      ....+++.++++.++     ++++++||++|.|+.+++.
T Consensus       153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            99986521      122455677777766     6799999999999986554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.68  E-value=7.7e-18  Score=152.70  Aligned_cols=165  Identities=14%  Similarity=0.044  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCcc----------ccCCCcccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQR----------CLTPMPFCS  109 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~----------~~~~~~~~~  109 (250)
                      .+|+|+|.+|||||||+| ++++.... ..++.+.+..           .+.+|||+|...          ..+..++. 
T Consensus        24 ~~V~lvG~~nvGKSTL~n-~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~-  101 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFN-RIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD-  101 (456)
T ss_dssp             CEEEEECSSSSSHHHHHH-HHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH-
T ss_pred             CEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh-
Confidence            469999999999999999 88874211 2233333322           578999999531          11222333 


Q ss_pred             ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEE
Q psy5810         110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFV  188 (250)
Q Consensus       110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  188 (250)
                               ++|++|+|+|..+..+.  ...|+.++.+.   .+.|+++|+||+|+.+.+    ....++. ..++ ..+
T Consensus       102 ---------~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~  162 (456)
T 4dcu_A          102 ---------EADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPY  162 (456)
T ss_dssp             ---------HCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEE
T ss_pred             ---------hCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceE
Confidence                     79999999998774333  33444444332   689999999999985321    1111111 2333 467


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHhhhhhhhHH--------HHHhhhhhhhhhhhhccC
Q psy5810         189 ETSVGLVYKTDELLVGIARQAGLNKKRNKLL--------AKKQKKMASYINNIKQFK  237 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  237 (250)
                      ++||++|.|+.++++.+.+.+..........        .......+++++++.+..
T Consensus       163 ~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~  219 (456)
T 4dcu_A          163 PISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE  219 (456)
T ss_dssp             ECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             EeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence            9999999999999999987665322111100        001135667777777654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.67  E-value=1.3e-16  Score=148.23  Aligned_cols=145  Identities=13%  Similarity=0.113  Sum_probs=101.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc---------cccc------ccCc----------------eeEEEEEeCCCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQT------YHPD----------------VFFIVYSDTNHT   98 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~~------~~~~----------------~~~i~i~Dt~g~   98 (250)
                      +..+|+|+|..++|||||++ +++.....         +.++      .|.+                ...+.+|||+|+
T Consensus         5 ~irnI~IiGh~d~GKTTLi~-rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLAD-RLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHH-HHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            45679999999999999998 77542111         1110      1111                125779999998


Q ss_pred             ccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH
Q psy5810          99 QRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG  176 (250)
Q Consensus        99 ~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  176 (250)
                      ...  ....++.          .+|++|+|+|.++..+++....|.....     .++|+++++||+|+.+..  .....
T Consensus        84 ~dF~~ev~r~l~----------~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~  146 (600)
T 2ywe_A           84 VDFSYEVSRALA----------ACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVK  146 (600)
T ss_dssp             GGGHHHHHHHHH----------TCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHH
T ss_pred             HhHHHHHHHHHH----------hCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHH
Confidence            632  1222233          7999999999999888888877766542     478999999999996532  22334


Q ss_pred             HHHHHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         177 KKLAYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       177 ~~~~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      .++.+.+++.   ++++||++|.||.++|+++++.+...
T Consensus       147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            5566666763   89999999999999999999877643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.67  E-value=1.8e-17  Score=140.58  Aligned_cols=154  Identities=11%  Similarity=0.090  Sum_probs=83.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc-----------ccccCcee-----------EEEEEeCCCCccccCCC-c
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-----------QTYHPDVF-----------FIVYSDTNHTQRCLTPM-P  106 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-----------~~~~~~~~-----------~i~i~Dt~g~~~~~~~~-~  106 (250)
                      ..++|+|+|.+|+|||||+| ++.+. ..+.           ++.+.+..           .+.+|||+|........ .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin-~L~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLIN-SLFLT-DLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHH-HHSSS-CC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             cEEEEEEECCCCCCHHHHHH-HHhCC-CccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            35789999999999999999 65443 2222           22222211           67899999973221110 0


Q ss_pred             ccccc-------cccc-----------ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810         107 FCSQV-------ENFV-----------QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus       107 ~~~~~-------~~~~-----------~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      +....       +.|.           .-.++|+++++++.+...-...-..+++.+..     ++|+++|+||+|+...
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence            11000       1110           01147899999977652211122335555521     7999999999997532


Q ss_pred             CccC--HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         169 RQVT--HSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       169 ~~v~--~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ..+.  .+...+.....+++++++||+++.|+.+++.+|...+.
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            2221  23345556677899999999999999999999887543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.66  E-value=2.7e-16  Score=141.83  Aligned_cols=141  Identities=12%  Similarity=0.015  Sum_probs=89.6

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCcee--------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDVF--------   88 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~~--------   88 (250)
                      ....++|+++|..++|||||++ +|+.....+..                               ..+.++.        
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGG-QIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHH-HHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            3456889999999999999998 77442111100                               1122222        


Q ss_pred             ---EEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHh---HH---HHHHHHHHHHhhhCCCCCc-E
Q psy5810          89 ---FIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKT---FK---KAEDMLKTLWDSKYIGEKA-V  156 (250)
Q Consensus        89 ---~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-i  156 (250)
                         .+.+|||+|+++.  ....++.          .+|++|+|+|.++...   |+   ...+.+..+..    .++| +
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~----------~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~i  158 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGAS----------QADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHL  158 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHh----------hCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeE
Confidence               6789999998632  2233344          7999999999998532   22   12222222211    3566 9


Q ss_pred             EEEeeCCCccCCC------ccCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy5810         157 ILVANKADLERRR------QVTHSDGKKLAYAWG------VKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       157 ilv~nK~Dl~~~~------~v~~~~~~~~~~~~~------~~~~evSa~~~~~I~~lf~  203 (250)
                      ++++||+|+....      ....++...+++..+      ++++++||++|.|+.++++
T Consensus       159 IvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          159 IVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            9999999984311      111233445555554      4699999999999999665

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.4e-17  Score=151.28  Aligned_cols=142  Identities=14%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCcee---------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDVF---------   88 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~~---------   88 (250)
                      ...++|+++|.+|+|||||++ +|+........                               ..|.++.         
T Consensus       165 k~~lkV~ivG~~n~GKSTLin-~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMG-RLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHH-HHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHH-HHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            346789999999999999999 77753211111                               1122221         


Q ss_pred             --EEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHH---hHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 --FIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 --~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                        .+.+|||+|+++  .....++.          .+|++|+|+|+++..   +|.....+...+.........|+|||+|
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~----------~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN  313 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGIS----------QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN  313 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSS----------CCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             CceEEEEECCCCcccHHHHHHHHh----------hcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence              788999999863  22334445          899999999999852   1111111111111111112345999999


Q ss_pred             CCCccCCCccCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy5810         162 KADLERRRQVTH----SDGKKLAYAWG-----VKFVETSVGLVYKTDEL  201 (250)
Q Consensus       162 K~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~evSa~~~~~I~~l  201 (250)
                      |+|+.+.+....    ++...+....+     ++++++||++|.||.++
T Consensus       314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            999865332222    23344444444     57999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.66  E-value=1.3e-16  Score=129.14  Aligned_cols=153  Identities=11%  Similarity=0.014  Sum_probs=93.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCCccccCCC----cccccccccc-
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHTQRCLTPM----PFCSQVENFV-  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~----~~~~~~~~~~-  115 (250)
                      ..+|+++|++|||||||++ ++++..  ....++.|.+..        .+.+|||+|......+.    .++.....+. 
T Consensus        26 ~~~v~lvG~~g~GKSTLl~-~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~  104 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALN-TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE  104 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHT-TTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHH-HHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHH
Confidence            3569999999999999998 788732  111233333321        36789999974211000    0111111111 


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHHHHHHHHHHhC--CeEEE
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHSDGKKLAYAWG--VKFVE  189 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~--~~~~e  189 (250)
                      ....++++++++|++++.++..  +..|+..       .+.|+++|+||+|+.+.  ++...+.+..++.+.+  +.+++
T Consensus       105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (210)
T 1pui_A          105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  177 (210)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence            1126899999999998765542  3334321       46899999999997542  2222345555665554  46889


Q ss_pred             EecCCCCCHHHHHHHHHHHHHh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +||+++.|+.++++++.+.+.+
T Consensus       178 ~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          178 FSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EeecCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.66  E-value=1.9e-16  Score=141.69  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=97.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccc-ccccc----c--cccCc------------------------------eeEEE
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV----Q--TYHPD------------------------------VFFIV   91 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~----~--~~~~~------------------------------~~~i~   91 (250)
                      ...++|+++|..++|||||++ ++.+. .+.+.    .  |+...                              ...+.
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~-~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTK-ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHH-HHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHH-HHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            456789999999999999998 78742 11111    1  21111                              14688


Q ss_pred             EEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC----HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          92 YSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        92 i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      +|||+|++.... .+..    .   +..+|++|+|+|+++    +++++.+..|. .+      ...|+++++||+|+.+
T Consensus        87 iiDtPGh~~f~~-~~~~----~---~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~------~~~~iivviNK~Dl~~  151 (410)
T 1kk1_A           87 FIDAPGHEALMT-TMLA----G---ASLMDGAILVIAANEPCPRPQTREHLMALQ-II------GQKNIIIAQNKIELVD  151 (410)
T ss_dssp             EEECSSHHHHHH-HHHH----C---GGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HH------TCCCEEEEEECGGGSC
T ss_pred             EEECCChHHHHH-HHHh----h---hhhCCEEEEEEECCCCCCChhHHHHHHHHH-Hc------CCCcEEEEEECccCCC
Confidence            999999863221 1111    1   116899999999985    55666655332 11      2357999999999865


Q ss_pred             CCc--cCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         168 RRQ--VTHSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       168 ~~~--v~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ...  ...++..++++.   .+++++++||++|.|+.+++++|...+..
T Consensus       152 ~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          152 KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            321  123445555544   35789999999999999999999876653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.65  E-value=1.9e-16  Score=145.70  Aligned_cols=102  Identities=15%  Similarity=0.042  Sum_probs=70.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc----------------ccccc------cccCce-----------eEEEEEeCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV----------------ENFVQ------TYHPDV-----------FFIVYSDTN   96 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~----------------~~~~~------~~~~~~-----------~~i~i~Dt~   96 (250)
                      +..+|+|+|.+|||||||++ +|+...                ..+..      ..+.++           ..+.+|||+
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~-~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTE-KLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHH-HHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHH-HHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            45679999999999999999 775110                00000      011111           267899999


Q ss_pred             CCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          97 HTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        97 g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      |+..  ..+..+++          .+|++|+|+|.++..+.+....|. .+..    .++|+++|+||+|+..
T Consensus        91 G~~df~~~~~~~l~----------~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           91 GHADFTEDTYRTLT----------AVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CSTTCCHHHHHGGG----------GCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred             CchhHHHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence            9863  22333444          799999999999987777766553 3322    4789999999999854

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.65  E-value=2.6e-16  Score=138.93  Aligned_cols=143  Identities=11%  Similarity=0.025  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccccc----ccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEe
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYS  128 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D  128 (250)
                      +|+++|..++|||||++ +|+.. ....    ..+...-..+.+|||||+++..     ..+...+   +.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~-~L~~~-giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-----~~~~~~~---~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAA-NLGKK-GTSSDITMYNNDKEGRNMVFVDAHSYPKTL-----KSLITAL---NISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHH-TTSEE-EEESSSEEEEECSSSSEEEEEECTTTTTCH-----HHHHHHH---HTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHH-HHHhC-CEEEEeeEEEEecCCeEEEEEECCChHHHH-----HHHHHHH---HHCCEEEEEEc
Confidence            69999999999999998 77731 1000    0011111268899999986421     1111111   17999999999


Q ss_pred             CCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEee-CCCccCCCccCH--HHHHHHHHHhC---CeEEE--EecCC---CC
Q psy5810         129 VIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVAN-KADLERRRQVTH--SDGKKLAYAWG---VKFVE--TSVGL---VY  196 (250)
Q Consensus       129 ~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~n-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e--vSa~~---~~  196 (250)
                       + ...+....+|+..+..    .++|. ++++| |+|+ +...+..  ++..++++..+   +++++  +||++   +.
T Consensus        93 -~-~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 -P-QGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             -T-TCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             -C-CCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence             4 3445556666665543    35676 88888 9998 4332222  44555555443   68999  99999   99


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy5810         197 KTDELLVGIARQAGLN  212 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~  212 (250)
                      |++++++.|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999876544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=1.3e-16  Score=143.86  Aligned_cols=139  Identities=14%  Similarity=0.045  Sum_probs=90.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc--------------cc-------------------ccCce---------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--------------QT-------------------YHPDV---------   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--------------~~-------------------~~~~~---------   87 (250)
                      ..++|+++|..++|||||++ +|++....+.              .+                   .+.++         
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIG-RLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHH-HHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CceEEEEEECCCCCHHHHHH-HHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45789999999999999998 7765321100              11                   01111         


Q ss_pred             --eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          88 --FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        88 --~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                        ..+.+|||+|+++.  ....++.          .+|++|+|+|+++.... ...+|+..+...   .-.|+++|+||+
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~----------~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~  167 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGAS----------TCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKM  167 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHT----------TCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECT
T ss_pred             CCceEEEEECCChHHHHHHHHHHHh----------hCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcC
Confidence              26889999998632  1122233          89999999999986432 234444444322   223699999999


Q ss_pred             CccCCCc--c--CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy5810         164 DLERRRQ--V--THSDGKKLAYAWG-----VKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       164 Dl~~~~~--v--~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf~  203 (250)
                      |+.+...  +  ..++..++++.++     ++++++||++|.|+.++|.
T Consensus       168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            9864211  1  2345666777777     6799999999999988543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.64  E-value=1.6e-16  Score=144.15  Aligned_cols=138  Identities=11%  Similarity=0.040  Sum_probs=89.6

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------c------cccCce----------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------Q------TYHPDV----------   87 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------~------~~~~~~----------   87 (250)
                      ...++|+++|..++|||||++ +|++....+.                         +      ..+.++          
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~-~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHH-HHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CceeEEEEEcCCCCCHHHHHH-HHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            356889999999999999998 7765211110                         0      122332          


Q ss_pred             -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHH---hHH---HHHHHHHHHHhhhCCCCCc-EE
Q psy5810          88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFK---KAEDMLKTLWDSKYIGEKA-VI  157 (250)
Q Consensus        88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~---~~~~~~~~i~~~~~~~~~p-ii  157 (250)
                       ..+.+|||+|+++.  ....++.          .+|++|+|+|+++..   +|+   ...+++..+..    .++| ++
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~----------~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~ii  149 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTS----------QADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLI  149 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSS----------CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEE
T ss_pred             CceEEEEECCCcHHHHHHHHhhhh----------hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEE
Confidence             26889999998631  1222333          899999999999863   442   22233332322    3565 99


Q ss_pred             EEeeCCCccCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy5810         158 LVANKADLERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDEL  201 (250)
Q Consensus       158 lv~nK~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~l  201 (250)
                      +++||+|+.+...    ...++...+++.++     ++++++||++|.|+.++
T Consensus       150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9999999863111    12345566666666     57999999999998754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.64  E-value=1e-16  Score=143.28  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=89.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc---cc---ccc-----------ccccCce-----------eEEEEEeCCCCc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ---VE---NFV-----------QTYHPDV-----------FFIVYSDTNHTQ   99 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~---~~---~~~-----------~~~~~~~-----------~~i~i~Dt~g~~   99 (250)
                      ....++|+++|..|+|||||++ +|.+.   ..   .+.           .+.+.++           ..+.+|||+|++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTA-ALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHH-HHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHH-HHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            4456889999999999999998 77662   00   110           0122221           268899999987


Q ss_pred             ccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCH
Q psy5810         100 RCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTH  173 (250)
Q Consensus       100 ~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~  173 (250)
                      +..  ...++.          .+|++|+|+|.++.... ...+|+..+..    .++| +++++||+|+.+...   ...
T Consensus        87 ~f~~~~~~~~~----------~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~  151 (405)
T 2c78_A           87 DYIKNMITGAA----------QMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVE  151 (405)
T ss_dssp             GGHHHHHHHHT----------TCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred             HHHHHHHHHHH----------HCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHH
Confidence            421  112222          79999999999986543 34556655533    3678 899999999864221   112


Q ss_pred             HHHHHHHHHhC-----CeEEEEecCCCCC
Q psy5810         174 SDGKKLAYAWG-----VKFVETSVGLVYK  197 (250)
Q Consensus       174 ~~~~~~~~~~~-----~~~~evSa~~~~~  197 (250)
                      ++..++++.++     ++++++||++|.|
T Consensus       152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          152 MEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            35666777665     5799999999987

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.63  E-value=8.4e-17  Score=146.25  Aligned_cols=142  Identities=12%  Similarity=0.010  Sum_probs=87.1

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCce----------
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDV----------   87 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~----------   87 (250)
                      ...++|+++|..++|||||++ +|+.....+.                               ...+.|+          
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~-~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGG-NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHH-HHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCeeEEEEEECCCCCHHHHHH-HHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            356789999999999999998 6753211110                               0122222          


Q ss_pred             -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCc-EEEEe
Q psy5810          88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKA-VILVA  160 (250)
Q Consensus        88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~p-iilv~  160 (250)
                       ..+.+|||+|+++.  .....+.          .+|++|+|+|+++.   .+|+...+|.+.+... ...++| +++++
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~----------~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivvi  188 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGAS----------QADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVI  188 (467)
T ss_dssp             SEEEEECCCCC-----------TT----------SCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEE
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcc----------cCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEE
Confidence             16789999998732  2223334          79999999999986   4554333333322211 114677 99999


Q ss_pred             eCCCccCCC------ccCHHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q psy5810         161 NKADLERRR------QVTHSDGKKLAYAW-------GVKFVETSVGLVYKTDELL  202 (250)
Q Consensus       161 nK~Dl~~~~------~v~~~~~~~~~~~~-------~~~~~evSa~~~~~I~~lf  202 (250)
                      ||+|+....      ....++...+++..       +++++++||++|.|+.++|
T Consensus       189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            999985311      11233566667666       3569999999999998866

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.63  E-value=3.6e-16  Score=139.36  Aligned_cols=144  Identities=14%  Similarity=0.101  Sum_probs=96.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccc-----cccc-----------ccccCce-----------eEEEEEeCCCCccc--
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQV-----ENFV-----------QTYHPDV-----------FFIVYSDTNHTQRC--  101 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~~-----------~~~~~~~-----------~~i~i~Dt~g~~~~--  101 (250)
                      .++|+++|..++|||||++ +|.+..     ..+.           ...+.++           ..+.+|||+|+++.  
T Consensus         3 ~~~I~iiG~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTA-AITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHH-HHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHH-HHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            5789999999999999998 776631     0110           0122222           26789999998632  


Q ss_pred             cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCHHHHH
Q psy5810         102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTHSDGK  177 (250)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~~~~~  177 (250)
                      ....++.          .+|++|+|+|.++....+....| ..+..    .++| +++++||+|+.+...   ...++..
T Consensus        82 ~~~~~~~----------~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~  146 (397)
T 1d2e_A           82 NMITGTA----------PLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIR  146 (397)
T ss_dssp             HHHHTSS----------CCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred             HHHhhHh----------hCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHH
Confidence            2222333          79999999999985443333333 33322    3678 789999999864221   1234566


Q ss_pred             HHHHHhC-----CeEEEEecCCCCC----------HHHHHHHHHHHHH
Q psy5810         178 KLAYAWG-----VKFVETSVGLVYK----------TDELLVGIARQAG  210 (250)
Q Consensus       178 ~~~~~~~-----~~~~evSa~~~~~----------I~~lf~~l~~~i~  210 (250)
                      ++++.++     ++++++||++|.|          +.++++.+.+.+.
T Consensus       147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            7777766     5899999999764          8888888877654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.61  E-value=1e-16  Score=146.18  Aligned_cols=135  Identities=19%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccc----cccCc---------eeEEEEEeCCCCcc--ccCCCccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPD---------VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~---------~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~  116 (250)
                      .+|+++|..++|||||++ ++.+.  .+..    .+...         -..+.+|||||++.  .++...+.        
T Consensus         5 ~~V~IvGhvd~GKTTLl~-~L~~~--~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~--------   73 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLE-YIRST--KVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQ--------   73 (501)
T ss_dssp             CCEEEEESTTSSSHHHHH-HHHHH--HHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSB--------
T ss_pred             eEEEEECCCCCCHHHHHH-HHHcC--CCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHh--------
Confidence            459999999999999998 77652  1111    01100         01678999999863  33333444        


Q ss_pred             cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHH--HHHHHHHHhC--CeE
Q psy5810         117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHS--DGKKLAYAWG--VKF  187 (250)
Q Consensus       117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~--~~~~~~~~~~--~~~  187 (250)
                        .+|++|+|+|+++   +++++.+.    .+..    .++|+++++||+|+.+.  ..+..+  +...++..++  +++
T Consensus        74 --~aD~aILVVda~~g~~~qT~e~l~----~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~  143 (501)
T 1zo1_I           74 --ATDIVVLVVAADDGVMPQTIEAIQ----HAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF  143 (501)
T ss_dssp             --SCSSEEEEEETTTBSCTTTHHHHH----HHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred             --hCCEEEEEeecccCccHHHHHHHH----HHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence              7999999999988   44544332    2221    47899999999998542  111110  0001122233  689


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q psy5810         188 VETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~  207 (250)
                      +++||++|.|+.++|+++..
T Consensus       144 v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          144 VHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             EECCTTTCTTCTTHHHHTTT
T ss_pred             EEEeeeeccCcchhhhhhhh
Confidence            99999999999999999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.60  E-value=4.7e-15  Score=132.47  Aligned_cols=154  Identities=11%  Similarity=-0.004  Sum_probs=105.3

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccccC--CCccccccccccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYH  119 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~  119 (250)
                      |+|+|.+|||||||++ .+++....    ...+..++..        .+.+||++|......  ........+   .+..
T Consensus       160 VgLVG~~gAGKSTLL~-~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---~~er  235 (416)
T 1udx_A          160 VGLVGYPNAGKSSLLA-AMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---HIAR  235 (416)
T ss_dssp             EEEECCGGGCHHHHHH-HHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---HHTS
T ss_pred             EEEECCCCCcHHHHHH-HHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---HHHH
Confidence            8999999999999997 78774211    1122333332        477999999752110  000000011   1126


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++.+++++|++ ...+.++..|..++..... ....|.++|+||+|+...  ...++..+.+...+++++++||+++.|+
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            89999999998 6677788888777755421 135799999999998653  2234445555666889999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy5810         199 DELLVGIARQAGLNKK  214 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~~  214 (250)
                      ++++.++.+.+.+...
T Consensus       313 ~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          313 PALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998876543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.60  E-value=1.2e-15  Score=144.68  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=77.5

Q ss_pred             EEEEEeCCCCcc-----ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810          89 FIVYSDTNHTQR-----CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA  163 (250)
Q Consensus        89 ~i~i~Dt~g~~~-----~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~  163 (250)
                      .+.+|||||...     ..+..++.          ++|++|+|+|.+++.+..+...|...+..    .+.|+++|+||+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~----------~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~  240 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVN----------NCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAW  240 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHH----------SSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECG
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHH----------hCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECc
Confidence            478999999642     22223333          89999999999999888887767554422    367899999999


Q ss_pred             CccCCCccCHH----------HHHH-----HHHH--------hCCeEEEEecC--------------CCCCHHHHHHHHH
Q psy5810         164 DLERRRQVTHS----------DGKK-----LAYA--------WGVKFVETSVG--------------LVYKTDELLVGIA  206 (250)
Q Consensus       164 Dl~~~~~v~~~----------~~~~-----~~~~--------~~~~~~evSa~--------------~~~~I~~lf~~l~  206 (250)
                      |+.....++.+          ....     +...        ...+++++||+              ++.|+.+++..+.
T Consensus       241 Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~  320 (695)
T 2j69_A          241 DQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLN  320 (695)
T ss_dssp             GGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHH
T ss_pred             ccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHH
Confidence            98643322221          1111     1111        12358999999              9999999999999


Q ss_pred             HHHHhhhhh
Q psy5810         207 RQAGLNKKR  215 (250)
Q Consensus       207 ~~i~~~~~~  215 (250)
                      +.+...+..
T Consensus       321 ~~l~~~~~~  329 (695)
T 2j69_A          321 TFLTRERAI  329 (695)
T ss_dssp             HHHHHTHHH
T ss_pred             HHHHHhHHH
Confidence            877654443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.58  E-value=1.3e-15  Score=136.17  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc---c-------ccccc-----Cc------eeEEEEEeCCCCccccCCC-cccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN---F-------VQTYH-----PD------VFFIVYSDTNHTQRCLTPM-PFCS  109 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~---~-------~~~~~-----~~------~~~i~i~Dt~g~~~~~~~~-~~~~  109 (250)
                      ++|+|+|++|||||||++ .+++....   .       ..+.+     ..      ...+.+|||+|........ .+..
T Consensus        32 f~I~lvG~sGaGKSTLln-~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLIN-SLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             EEEEEECCCCCcHHHHHH-HHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            669999999999999998 77763110   0       01111     00      0157799999976322100 0000


Q ss_pred             c-------cccc--------c-ccCCCcEEEEEEeCCCH-HhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc
Q psy5810         110 Q-------VENF--------V-QTYHPDVFVIVYSVIER-KTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQV  171 (250)
Q Consensus       110 ~-------~~~~--------~-~~~~ad~iilV~D~~~~-~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v  171 (250)
                      .       .+.+        . .+.++++.+++|+.+.. .+|+.+. .|+..+.     .++|+|+|+||+|+...+.+
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence            0       0000        0 11256665666666543 4555554 5777662     37899999999998655555


Q ss_pred             CH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         172 TH--SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       172 ~~--~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ..  +++.+++..++++++++||+++.++.++|..+...+.
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            54  6778888889999999999999999998888876544

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.58  E-value=2.3e-15  Score=146.99  Aligned_cols=147  Identities=13%  Similarity=0.035  Sum_probs=97.3

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccc-----ccc-----------cccccCce-----------eEEEEEeCCCCcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV-----ENF-----------VQTYHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~-----------~~~~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      ....++|+++|..++|||||++ ++.+..     ..+           ..+.|.++           ..+.+|||+|+++
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLIn-rLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTA-AITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHH-HHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHH-HHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            4456889999999999999998 776531     000           01222222           1688999999874


Q ss_pred             c--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCHH
Q psy5810         101 C--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTHS  174 (250)
Q Consensus       101 ~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~~  174 (250)
                      .  ....++.          .+|++|+|+|+++....+ ..+|+..+..    .++| +|+++||+|+.+...   ...+
T Consensus       372 F~~~mi~gas----------~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~e  436 (1289)
T 3avx_A          372 YVKNMITGAA----------QMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEM  436 (1289)
T ss_dssp             HHHHHHHTSC----------CCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHh----------hCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHH
Confidence            2  1222333          799999999999864333 3445544433    3678 899999999864222   1234


Q ss_pred             HHHHHHHHhC-----CeEEEEecCCC--------CCHHHHHHHHHHHHH
Q psy5810         175 DGKKLAYAWG-----VKFVETSVGLV--------YKTDELLVGIARQAG  210 (250)
Q Consensus       175 ~~~~~~~~~~-----~~~~evSa~~~--------~~I~~lf~~l~~~i~  210 (250)
                      ++.++++..+     ++++++||++|        .||.++++.+.+.+.
T Consensus       437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            5667777766     57999999999        468888888776554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.57  E-value=6.2e-15  Score=124.05  Aligned_cols=120  Identities=11%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccC-ce-----------eEEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP-DV-----------FFIVYSDTNHTQR--CLTPMPFCSQVENFV  115 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~-~~-----------~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~  115 (250)
                      +.++|+++|.+|||||||++ ++.+....+...+.+ +.           ..+.+|||+|++.  .....+++ ....+.
T Consensus        35 ~~~~I~lvG~~g~GKSSLin-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~-~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALE-LIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHH-HHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHH-HHHHHH
Confidence            56889999999999999999 788743222222111 11           1678999999862  22222222 111122


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT  172 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~  172 (250)
                      ...++|++++|+|++... +... ..|+..+....... ..|+++|+||+|+...+...
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence            222689999999998754 4333 46777775543221 24999999999985433333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.56  E-value=3.1e-16  Score=134.77  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc------------ccccC-----------ceeEEEEEeCCCCcc--------
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV------------QTYHP-----------DVFFIVYSDTNHTQR--------  100 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~------------~~~~~-----------~~~~i~i~Dt~g~~~--------  100 (250)
                      ++|+|+|++|||||||++ ++.+. ..+.            .+...           ....+.+|||+|+..        
T Consensus        19 ~~I~lvG~nG~GKSTLl~-~L~g~-~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLIN-SLFLT-DLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             EEEEEEEETTSSHHHHHH-HHHC-------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             EEEEEECCCCCCHHHHHH-HHhCC-CccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            679999999999999998 65542 0111            11100           011578999999731        


Q ss_pred             -ccCC-------Ccccccc---ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810         101 -CLTP-------MPFCSQV---ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus       101 -~~~~-------~~~~~~~---~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                       .+..       .+++...   ........+++++++.+.+. .+|+.+. +++..+     ..+.|+++|+||+|+...
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCCH
Confidence             1111       1111000   00011123455555554332 1343332 233333     146799999999998653


Q ss_pred             Cc--cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         169 RQ--VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       169 ~~--v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +.  +..+++.++++.++++|+++||+++ |++++|.++.+.+....
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            33  3356788899999999999999999 99999999998886543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.56  E-value=8.5e-16  Score=135.14  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCccccCCC---cc----ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLTPM---PF----CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~---~~----~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .+.+|||||..+.....   ..    ......|.  +++|++|+|+|.++.....  ..|+..+.. ....+.|+++|+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~n  211 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLT  211 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEE
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEe
Confidence            57899999986432110   00    11111121  2899999999876543322  233333322 2345789999999


Q ss_pred             CCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810         162 KADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      |+|+........+....+...++.+|+++|+.++.++++.+.....
T Consensus       212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          212 KIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             CGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             CCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            9998665555555555555566788999999999998877665443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.55  E-value=5.1e-15  Score=120.78  Aligned_cols=85  Identities=18%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVY  196 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~  196 (250)
                      .++.+++|+|+++...  ....+...       .+.|+++|+||+|+.+.+....++..++++..  +++++++||++|.
T Consensus       129 ~~~~~i~vvd~~~~~~--~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  199 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDD--VVEKHPEI-------FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGK  199 (221)
T ss_dssp             SCSEEEEEEEGGGCTT--HHHHCHHH-------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTB
T ss_pred             ccCcEEEEEeCCCcch--hhhhhhhh-------hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCC
Confidence            5688999999887532  11112111       14788999999998653334566777777665  4689999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy5810         197 KTDELLVGIARQAGLN  212 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~  212 (250)
                      |+.++|+++.+.+...
T Consensus       200 gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          200 GFEEWIDFLRGILNVH  215 (221)
T ss_dssp             THHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999877543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.54  E-value=1.7e-14  Score=121.81  Aligned_cols=120  Identities=12%  Similarity=0.042  Sum_probs=73.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRC--LTPMPFCSQVENFV  115 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~  115 (250)
                      ..++|+++|.+|+|||||+| ++.+..... ....+.+.           ..+.+|||+|.+..  ....+.. ....+.
T Consensus        38 ~~~~I~vvG~~g~GKSSLin-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~-~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVN-SIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN-IIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHH-HHHHHh
Confidence            56889999999999999999 787742111 11111111           16889999998632  1111111 111122


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYI-GEKAVILVANKADLERRRQVT  172 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~  172 (250)
                      ..+++|++++|+|++.. ++... ..|+..+...... ...|+++|+||+|+.....++
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence            22368999999999763 34433 3677777554221 126999999999986544333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.54  E-value=5.6e-15  Score=131.48  Aligned_cols=46  Identities=24%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             CCcEEEEeeCCCccCCCccCHHHHHHHH---HHhCCeEEEEecCCCCCHHHHHH
Q psy5810         153 EKAVILVANKADLERRRQVTHSDGKKLA---YAWGVKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~~~I~~lf~  203 (250)
                      ..|+++|+||+|+..     .+....+.   ...+.+++++||+.+.++.+++.
T Consensus       214 ~kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            489999999999752     22233333   33367899999999999887654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.53  E-value=8.4e-15  Score=126.04  Aligned_cols=118  Identities=11%  Similarity=0.000  Sum_probs=65.4

Q ss_pred             EEEEEeCCCCccccC-------CCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEe
Q psy5810          89 FIVYSDTNHTQRCLT-------PMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVA  160 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~-------~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~  160 (250)
                      .+.+|||+|..+.-.       ..++......+.  +++|++++|+|.++.. .-.....++..+    ...+.|+++|+
T Consensus       132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~  205 (315)
T 1jwy_B          132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVI  205 (315)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEE
T ss_pred             CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEE
Confidence            588999999753110       001111111222  2899999999974432 111112233333    23578999999


Q ss_pred             eCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC------CCCHHHHHHHHHHHHHhh
Q psy5810         161 NKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL------VYKTDELLVGIARQAGLN  212 (250)
Q Consensus       161 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~------~~~I~~lf~~l~~~i~~~  212 (250)
                      ||+|+........+........++..|+++|+..      +.|+.+++..+...+...
T Consensus       206 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             ECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            9999865433222222211111225566666554      688999999988777543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.53  E-value=1e-15  Score=125.34  Aligned_cols=58  Identities=21%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             CcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         154 KAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       154 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      .|.++|+||+|+.+.+.+..+++.++++.+  +++++++||++|.|++++|+++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            567999999998654445677777777765  5789999999999999999999887653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.51  E-value=9.9e-16  Score=142.79  Aligned_cols=133  Identities=13%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce---------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV---------   87 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~---------   87 (250)
                      ....++|+++|.+|+|||||++ +|+........                               ..|.|+         
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLG-RIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHH-HHHHHHHCC------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHH-HHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence            3456889999999999999998 77532100000                               111222         


Q ss_pred             --eEEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCC
Q psy5810          88 --FFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGE  153 (250)
Q Consensus        88 --~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~  153 (250)
                        ..+.+|||+|++.  ......+.          .+|++|+|+|+++.          .+.+.+    ..+..    .+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~----------~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~----lg  314 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGAS----------SADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA----LG  314 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-----------------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH----SS
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHh----------hCCEEEEEEECCCCccccccccchHHHHHH----HHHHH----cC
Confidence              1577899999873  23333444          79999999999863          233222    22211    35


Q ss_pred             Cc-EEEEeeCCCccCCCcc----CHHHHHHHH-HHhCC-----eEEEEecCCCCCHH
Q psy5810         154 KA-VILVANKADLERRRQV----THSDGKKLA-YAWGV-----KFVETSVGLVYKTD  199 (250)
Q Consensus       154 ~p-iilv~nK~Dl~~~~~v----~~~~~~~~~-~~~~~-----~~~evSa~~~~~I~  199 (250)
                      +| +|+|+||+|+.+...-    ...+...+. +..++     +++++||++|.||.
T Consensus       315 ip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          315 ISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             CCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            55 9999999998642111    122333444 44454     69999999999998

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.51  E-value=8.5e-14  Score=128.10  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccc----------------c------ccccCce-----------eEEEEEeC
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENF----------------V------QTYHPDV-----------FFIVYSDT   95 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----------------~------~~~~~~~-----------~~i~i~Dt   95 (250)
                      .+..+|+|+|.+|+|||||++ +++.....+                .      .+.+.++           ..+.+|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~-~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITE-KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHH-HHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHH-HHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            356789999999999999998 776421111                0      0112221           16889999


Q ss_pred             CCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          96 NHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        96 ~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      +|++.  .....++.          .+|++|+|+|.++...... ..++.    .....++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~----------~aD~~IlVvDa~~g~~~~t-~~~~~----~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLT----------AVDCCLMVIDAAKGVEDRT-RKLME----VTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGG----------GCSEEEEEEETTTCSCHHH-HHHHH----HHTTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHH----------HCCEEEEEEeCCccchHHH-HHHHH----HHHHcCCCEEEEEcCcCCcc
Confidence            99863  22233344          7999999999998643221 22222    22335789999999999854

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.49  E-value=1.1e-15  Score=134.11  Aligned_cols=114  Identities=15%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             EEEEEeCCCCccccC---CC----ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLT---PM----PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~---~~----~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .+.+|||||..+.-.   +.    .+..+...|.. ..++++++|.|.+....-.....++..+    ...+.|+++|+|
T Consensus       131 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~N  205 (353)
T 2x2e_A          131 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVIT  205 (353)
T ss_dssp             SEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEE
T ss_pred             CcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEec
Confidence            588999999753211   10    12222223332 1345555666665532222222344444    335789999999


Q ss_pred             CCCccCCCccCHHHHHH--HHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810         162 KADLERRRQVTHSDGKK--LAYAWGV-KFVETSVGLVYKTDELLVGIAR  207 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~--~~~~~~~-~~~evSa~~~~~I~~lf~~l~~  207 (250)
                      |+|+.+......+....  +....++ +++++||+++.|+.++++.+..
T Consensus       206 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          206 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             cccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            99986533211111110  1111233 4688999999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.49  E-value=6.7e-14  Score=132.18  Aligned_cols=101  Identities=10%  Similarity=-0.059  Sum_probs=66.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc--ccc----------------cccCce-----------eEEEEEeCCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN--FVQ----------------TYHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~~----------------~~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      +..+|+|+|..|+|||||++ ++++....  ...                ..+.++           ..+.+|||+|+..
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~-~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTE-ALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHH-HHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCcEEEEECCCCChHHHHHH-HHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            34569999999999999998 77632110  000                001111           1678999999863


Q ss_pred             --ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                        .....+++          .+|++++|+|.++...... ..|+..+..    .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~----------~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALE----------AADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHH----------HCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHh----------hcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence              22333344          7999999999987654433 344444433    478999999999986

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.47  E-value=1.1e-13  Score=131.22  Aligned_cols=104  Identities=11%  Similarity=-0.064  Sum_probs=70.7

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccc------------cc------cccCcee-----------EEEEEeCCCC
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENF------------VQ------TYHPDVF-----------FIVYSDTNHT   98 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~------------~~------~~~~~~~-----------~i~i~Dt~g~   98 (250)
                      ..+..+|+|+|..|+|||||++ +++.....+            .+      ..+.++.           .+.+|||+|+
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~-~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~   87 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTE-RILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH   87 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHH-HHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred             cccccEEEEECCCCCCHHHHHH-HHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence            3456789999999999999998 776311100            00      1222221           6789999998


Q ss_pred             cc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          99 QR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        99 ~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ..  ..+..+++          .+|++|+|+|.++..+++....|.. +.+    .++|+++|+||+|+..
T Consensus        88 ~df~~~~~~~l~----------~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMR----------VLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHH----------HCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHH----------HCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            53  22333334          7999999999999888877766654 322    4789999999999853

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.46  E-value=2.3e-14  Score=125.80  Aligned_cols=102  Identities=20%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+.+|||+|....... ...          .+|++++|+|.+..+.++.+..         ...+.|+++|.||+|+.+.
T Consensus       173 ~~iiiDTpGi~~~~~~-~~~----------~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~  232 (355)
T 3p32_A          173 DVILIETVGVGQSEVA-VAN----------MVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHH  232 (355)
T ss_dssp             CEEEEEECSCSSHHHH-HHT----------TCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGH
T ss_pred             CEEEEeCCCCCcHHHH-HHH----------hCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcCh
Confidence            6789999994321110 112          7999999999877654433221         1134689999999998542


Q ss_pred             CccCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         169 RQVTHSDGKKLAYA----------WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       169 ~~v~~~~~~~~~~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      .... ....++...          ++.+++++||++|.||+++++++.+.+..
T Consensus       233 ~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          233 KEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            2211 111222221          25679999999999999999999987765

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=1.5e-12  Score=114.10  Aligned_cols=135  Identities=13%  Similarity=0.085  Sum_probs=85.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc---c-cccccCce------------------------eEEEEEeCCCCcc---
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN---F-VQTYHPDV------------------------FFIVYSDTNHTQR---  100 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~---~-~~~~~~~~------------------------~~i~i~Dt~g~~~---  100 (250)
                      ++|+|+|.+|||||||+| ++++....   + ..|+.++.                        ..+++|||+|+.+   
T Consensus         3 ~kI~IVG~pnvGKSTL~n-~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFN-ALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            469999999999999999 78774211   1 11333332                        2488999999863   


Q ss_pred             ---ccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHH---------------------
Q psy5810         101 ---CLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLW---------------------  146 (250)
Q Consensus       101 ---~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~---------------------  146 (250)
                         .+...++.    .   ++++|++++|+|+++.          +.++++..|..++.                     
T Consensus        82 ~~~gl~~~fl~----~---ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g  154 (363)
T 1jal_A           82 KGEGLGNKFLA----N---IRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGG  154 (363)
T ss_dssp             HHGGGTCCHHH----H---HHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccchHHHHHHH----H---HHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhcc
Confidence               34433311    0   1289999999999862          23333332222220                     


Q ss_pred             --------------------------------------hhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEE
Q psy5810         147 --------------------------------------DSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       147 --------------------------------------~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  188 (250)
                                                            .+......|+++++|+.|..-......+...+++...+.+++
T Consensus       155 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i  234 (363)
T 1jal_A          155 DKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVV  234 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEE
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEE
Confidence                                                  011123489999999999642222345667888888899999


Q ss_pred             EEecCC
Q psy5810         189 ETSVGL  194 (250)
Q Consensus       189 evSa~~  194 (250)
                      ++||+.
T Consensus       235 ~~sA~~  240 (363)
T 1jal_A          235 PVCAAI  240 (363)
T ss_dssp             EECHHH
T ss_pred             EechHH
Confidence            999764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=113.64  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=59.4

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+.++||+|..... .....          .+|++++|+|.+++...+.+..   .+      -+.|.++|.||+|+.+.
T Consensus       168 ~~iliDT~Gi~~~~-~~l~~----------~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~  227 (349)
T 2www_A          168 DIILIETVGVGQSE-FAVAD----------MVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLI  227 (349)
T ss_dssp             SEEEEECCCC--CH-HHHHT----------TCSEEEEEECCC---------------------CCSCSEEEECCCSGGGH
T ss_pred             CEEEEECCCcchhh-hhHHh----------hCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCc
Confidence            57899999953110 01112          7999999999987643322221   12      24578999999998531


Q ss_pred             CccCHHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         169 RQVTHSDGKKLAY----------AWGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       169 ~~v~~~~~~~~~~----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ... ......+..          .++.+++.+||++|.|+++++++|.+.+..
T Consensus       228 ~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          228 VPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            111 011122221          124568999999999999999999887643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.39  E-value=1.1e-12  Score=124.38  Aligned_cols=102  Identities=10%  Similarity=-0.083  Sum_probs=69.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccc------------cc------cccCce-----------eEEEEEeCCCCcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF------------VQ------TYHPDV-----------FFIVYSDTNHTQR  100 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~------------~~------~~~~~~-----------~~i~i~Dt~g~~~  100 (250)
                      +..+|+|+|.+|+|||||++ +++.....+            .+      ..+.++           ..+.+|||+|+..
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~-~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTE-RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHH-HHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            45679999999999999999 776321111            00      011111           1678999999863


Q ss_pred             --ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810         101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus       101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                        ..+..+++          .+|++|+|+|.++..+++....|.. +.+    .++|+++|+||+|+..
T Consensus        88 f~~~~~~~l~----------~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           88 FTVEVERSLR----------VLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCHHHHHHHH----------HCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHH----------HCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence              22222333          7999999999999877777666643 433    4789999999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.38  E-value=2.3e-12  Score=122.35  Aligned_cols=102  Identities=12%  Similarity=-0.062  Sum_probs=68.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce------------------eEEEEE
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV------------------FFIVYS   93 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~------------------~~i~i~   93 (250)
                      +..+|+|+|..|+|||||++ +++.....            +.+      ..+.++                  ..+.+|
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~-~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTE-RILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             cccEEEEECCCCCCHHHHHH-HHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            34569999999999999998 77532110            000      112222                  357799


Q ss_pred             eCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          94 DTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        94 Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ||+|+..  ..+..+++          .+|++|+|+|.++....+....|.. +..    .++|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~----------~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMR----------VLDGAVMVYCAVGGVQPQSETVWRQ-ANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHH----------HCCEEEEEEeCCCCCcHHHHHHHHH-HHH----cCCCEEEEEeCCCccc
Confidence            9999863  23333444          7999999999998776665554532 322    4789999999999843

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.34  E-value=3e-12  Score=112.59  Aligned_cols=52  Identities=27%  Similarity=0.182  Sum_probs=39.4

Q ss_pred             CCcEEEEeeCCCcc--CC-CccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810         153 EKAVILVANKADLE--RR-RQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG  204 (250)
Q Consensus       153 ~~piilv~nK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~  204 (250)
                      ..|+++++||.|..  +. +....+...++++..+.+++++||+...++.+++..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            37999999999843  21 124467788889888999999999987777666554

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.34  E-value=2.2e-12  Score=107.76  Aligned_cols=113  Identities=13%  Similarity=-0.072  Sum_probs=66.1

Q ss_pred             EEEEEeCCCCccccCCCc-cccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810          89 FIVYSDTNHTQRCLTPMP-FCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD  164 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D  164 (250)
                      ++.+|||+|+........ .....+.+   .+ ++++++.|...   +..+.....+......   ..+.|+++|+||+|
T Consensus       110 d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D  182 (262)
T 1yrb_A          110 DYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVD  182 (262)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGG
T ss_pred             CEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccc
Confidence            688999999863221100 00000011   16 88888888754   3333332222211111   13689999999999


Q ss_pred             ccCCCccCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         165 LERRRQVTHSDGKK----------------------------LAYAWG--VKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       165 l~~~~~v~~~~~~~----------------------------~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +.....+  ++..+                            +++.++  .+++++||+++.|++++++++.+.+.
T Consensus       183 ~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          183 LLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             GCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            8543221  11111                            123444  47999999999999999999987664

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.31  E-value=4.4e-12  Score=108.86  Aligned_cols=85  Identities=18%  Similarity=0.065  Sum_probs=71.4

Q ss_pred             CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT-HSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      ++|++++|+|++++. +++.+..|+..+..    .++|+++|+||+|+.+.+.++ .++..++++..+++++++||++|.
T Consensus        79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~  154 (302)
T 2yv5_A           79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE  154 (302)
T ss_dssp             SCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             hcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            999999999999986 99999999987754    589999999999986543333 455666777789999999999999


Q ss_pred             CHHHHHHHHHH
Q psy5810         197 KTDELLVGIAR  207 (250)
Q Consensus       197 ~I~~lf~~l~~  207 (250)
                      |+++++..+..
T Consensus       155 gi~~L~~~l~G  165 (302)
T 2yv5_A          155 GIDELVDYLEG  165 (302)
T ss_dssp             THHHHHHHTTT
T ss_pred             CHHHHHhhccC
Confidence            99999987754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.25  E-value=1.5e-12  Score=120.42  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=70.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc---cc---cc-------ccCc------------------------------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN---FV---QT-------YHPD------------------------------   86 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~---~~---~~-------~~~~------------------------------   86 (250)
                      ...+|+|+|.+|||||||+| ++++....   ..   .+       ++..                              
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN-~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQ-YLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHH-HHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            34679999999999999999 78774210   00   00       0000                              


Q ss_pred             -e---------eEEEEEeCCCCccc----cCCCc-cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC
Q psy5810          87 -V---------FFIVYSDTNHTQRC----LTPMP-FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI  151 (250)
Q Consensus        87 -~---------~~i~i~Dt~g~~~~----~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~  151 (250)
                       .         ..+.+|||+|....    +...+ +......+.  ..+|++|+|+|.++....+....|+..+.+    
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence             0         14789999998631    11111 111111222  279999999999886555666677776633    


Q ss_pred             CCCcEEEEeeCCCccC
Q psy5810         152 GEKAVILVANKADLER  167 (250)
Q Consensus       152 ~~~piilv~nK~Dl~~  167 (250)
                      .+.|+++|+||+|+..
T Consensus       217 ~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             CGGGEEEEEECGGGSC
T ss_pred             cCCCEEEEEECCCccC
Confidence            4689999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.25  E-value=1.2e-11  Score=107.95  Aligned_cols=102  Identities=17%  Similarity=0.030  Sum_probs=61.4

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+.+|||+|...... ....          .+|++++|+|.+....++.+..   ..      .+.|.++|+||+|+.+.
T Consensus       150 ~i~liDTpG~~~~~~-~~~~----------~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          150 DVVIVETVGVGQSET-EVAR----------MVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             SEEEEEEECCTTHHH-HHHT----------TCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred             CEEEEeCCCccchHH-HHHH----------hCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence            688999999542111 1122          7999999999976543221111   11      14678999999998642


Q ss_pred             CccCH--HHHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         169 RQVTH--SDGKKLAYAW-------GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       169 ~~v~~--~~~~~~~~~~-------~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ..+..  ++........       ..+++++||++|.|++++++++.+.+.
T Consensus       210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            21111  1122111121       346899999999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.24  E-value=2.2e-11  Score=106.02  Aligned_cols=102  Identities=16%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+.++||+|..+... ....          .+|.+++|+|....+..+.+..++.         +.|.+++.||+|+...
T Consensus       149 ~~iliDT~Gi~~~~~-~v~~----------~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvlNK~Dl~~~  208 (337)
T 2qm8_A          149 DVILVETVGVGQSET-AVAD----------LTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADDGDG  208 (337)
T ss_dssp             CEEEEEECSSSSCHH-HHHT----------TSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCSTTCC
T ss_pred             CEEEEECCCCCcchh-hHHh----------hCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEEEchhccCc
Confidence            678899999642210 0112          7899999999875433222211111         2355667799996432


Q ss_pred             CccCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         169 RQVTHSDGKKLAYAW----------GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~----------~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ...+......+....          ..+++.+||+++.|++++++.+.+.+.
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222222233333321          346889999999999999999987654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.19  E-value=1.7e-11  Score=118.46  Aligned_cols=112  Identities=19%  Similarity=0.201  Sum_probs=75.3

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccc----------cccc----------cccCc---------------------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----------NFVQ----------TYHPD---------------------   86 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----------~~~~----------~~~~~---------------------   86 (250)
                      ..+..+|+|+|..|+|||||++ +++....          .+.+          |+...                     
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~-~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTD-SLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHH-HHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             cccccEEEEECCCCCCHHHHHH-HHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            3456789999999999999998 6765211          1110          11110                     


Q ss_pred             --eeEEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810          87 --VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK  162 (250)
Q Consensus        87 --~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK  162 (250)
                        -..+.+|||+|+..  ..+..+++          .+|++|+|+|+++..+++....|.... .    .++|+++++||
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~----------~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK  159 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALR----------VTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINK  159 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHH----------TCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEEC
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEEC
Confidence              23578999999863  22333444          899999999999998888776665432 2    47899999999


Q ss_pred             CCccC-CCccCHHH
Q psy5810         163 ADLER-RRQVTHSD  175 (250)
Q Consensus       163 ~Dl~~-~~~v~~~~  175 (250)
                      +|+.. +..++.++
T Consensus       160 ~D~~~~e~~~~~~e  173 (842)
T 1n0u_A          160 VDRALLELQVSKED  173 (842)
T ss_dssp             HHHHHHTSCCCHHH
T ss_pred             CCcchhhhccCHHH
Confidence            99852 23344443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.11  E-value=2.3e-11  Score=115.42  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             EEEEEeCCCCccccC---C----CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810          89 FIVYSDTNHTQRCLT---P----MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN  161 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~---~----~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n  161 (250)
                      .+.++||||-.....   +    .........|.. ..+|++++|.|.++...-.+...++..+    ...+.|+++|.|
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g~pvIlVlN  225 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVIT  225 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHH----CTTCSSEEEEEE
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcCCCEEEEEe
Confidence            467899999754211   1    111222333332 3789999999998754333333344444    235789999999


Q ss_pred             CCCccCCCccCHHHHHH--HHHHhC-CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         162 KADLERRRQVTHSDGKK--LAYAWG-VKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       162 K~Dl~~~~~v~~~~~~~--~~~~~~-~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      |+|+.............  +....+ .+++.+||++|.|++++++.+...
T Consensus       226 KiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          226 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             CTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             CcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            99986433322211110  000113 246789999999999999988863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.08  E-value=3.7e-11  Score=96.78  Aligned_cols=105  Identities=8%  Similarity=-0.090  Sum_probs=70.5

Q ss_pred             CCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHH---Hhhh-CCCCCcEEEEeeCC-CccC
Q psy5810          95 TNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTL---WDSK-YIGEKAVILVANKA-DLER  167 (250)
Q Consensus        95 t~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i---~~~~-~~~~~piilv~nK~-Dl~~  167 (250)
                      .+||.  +.+|..||.          ++|++|+|.|.+|.+-++ .+..+.++   .... ...++|++|++||. |++.
T Consensus       109 ~GGQ~klRplWr~Yy~----------~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~  177 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCE----------VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK  177 (227)
T ss_dssp             --------CCHHHHHH----------HCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred             cCcHHHHHHHHHHHhc----------CCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence            34676  888999999          899999999999985443 33333222   2221 12578999999995 6754


Q ss_pred             CCccCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         168 RRQVTHSDGKKLAY----AWGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       168 ~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                        .++..+..+...    ...|.+..|||++|+|+.+.++||.+.+..+
T Consensus       178 --Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          178 --RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             --BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             --CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence              455555443321    2356689999999999999999999776544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.07  E-value=6.6e-10  Score=97.78  Aligned_cols=146  Identities=9%  Similarity=-0.045  Sum_probs=85.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCcccc--CCCccccccccccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCL--TPMPFCSQVENFVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~~  118 (250)
                      ..|+|+|.||||||||+| ++++......    .|..+..+       .+++.||||-.+.-  .....+...+   .++
T Consensus        73 a~V~ivG~PNvGKSTL~n-~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~---~i~  148 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLS-KLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIA---VAR  148 (376)
T ss_dssp             EEEEEECCCCHHHHHHHH-HHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHH---HHH
T ss_pred             CeEEEECCCCCCHHHHHH-HHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHH---HHH
Confidence            459999999999999999 8888532222    22223222       67899999964221  1111111111   223


Q ss_pred             CCcEEEEEEeCCCHHh-HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--------CCccCHHHHHHHHHHhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKT-FKKAEDMLKTLWDSKYIGEKAVILVANKADLER--------RRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~S-f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                      .+|++++|.|.+++.. ++.+...+....  ......|.+++.||.|...        ...++.++...+...+.+.--+
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            7999999999999743 232333332221  1224678888999999632        2245677777777666654333


Q ss_pred             EecCCCCCHHHHHH
Q psy5810         190 TSVGLVYKTDELLV  203 (250)
Q Consensus       190 vSa~~~~~I~~lf~  203 (250)
                      +-...+...+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            33334445555443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.92  E-value=5.9e-10  Score=93.97  Aligned_cols=105  Identities=8%  Similarity=-0.091  Sum_probs=71.3

Q ss_pred             CCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHH---HHHhhh-CCCCCcEEEEeeC-CCccC
Q psy5810          95 TNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLK---TLWDSK-YIGEKAVILVANK-ADLER  167 (250)
Q Consensus        95 t~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~---~i~~~~-~~~~~piilv~nK-~Dl~~  167 (250)
                      .+||.  +.+|..||.          ++|++|+|.|.+|++-++ ....+.   .+.... ...++|++|.+|| .|+++
T Consensus       194 ~GGQ~~lRplWr~Yy~----------~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~  262 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCE----------VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK  262 (312)
T ss_dssp             ---CCCCCHHHHHHHH----------HCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred             CCCHHHHHHHHHHHhc----------CCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence            35665  788888998          899999999999986543 222222   222221 1368999999996 58854


Q ss_pred             CCccCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         168 RRQVTHSDGKKLAY----AWGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       168 ~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                        .++..+..+...    ...+.+..|||++|+|+.+.++||.+.+..+
T Consensus       263 --Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          263 --RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             --BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             --CCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence              445554433221    2346689999999999999999999877544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.70  E-value=1.7e-08  Score=88.82  Aligned_cols=108  Identities=22%  Similarity=0.220  Sum_probs=73.3

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEEe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVETS  191 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~evS  191 (250)
                      .++++++|+|++++.     ..|..++.+..  .+.|+++|+||+|+.+. ....++..++    ++..|+   +++++|
T Consensus        69 ~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iS  140 (368)
T 3h2y_A           69 SDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLIS  140 (368)
T ss_dssp             SCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred             cCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence            788999999999864     45666665542  47899999999998543 3334444444    666787   799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      |++|.|++++++.+.+.....  ....-.......++.++.+.++
T Consensus       141 A~~g~gi~~L~~~l~~~~~~~--~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          141 AAKGQGIAELADAIEYYRGGK--DVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTTCTTHHHHHHHHHHHHTTS--CEEEEEBTTSSHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHhhhhhhcccc--eEEEecCCCCChhHHHHHHHhh
Confidence            999999999999987643211  0000111113556777777765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.70  E-value=5.4e-08  Score=89.85  Aligned_cols=102  Identities=16%  Similarity=0.045  Sum_probs=62.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc----------------ccc------cccCcee-----------EEEEEeCCCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----------------FVQ------TYHPDVF-----------FIVYSDTNHT   98 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----------------~~~------~~~~~~~-----------~i~i~Dt~g~   98 (250)
                      =.|+|+|..++|||||.. +++...+.                +.+      .-|.++.           .+.+.||||.
T Consensus        32 RNiaIiaHvdaGKTTLtE-~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTE-KLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             ceEEEEeCCCCCHHHHHH-HHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            349999999999999998 55421110                111      0111111           6789999996


Q ss_pred             ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      .....        |...+++-+|++|+|+|....-.-+....|. ...+    .++|.+++.||.|...
T Consensus       111 vDF~~--------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~----~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          111 QDFSE--------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM----RATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGCSH--------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSCC
T ss_pred             HHHHH--------HHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH----hCCceEEEEecccchh
Confidence            42111        1112222689999999998864444444452 2323    5899999999999743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.68  E-value=3.6e-07  Score=80.79  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             CCcEEEEeeCCCccC--CCccCHHHHHHHHHHhC--CeEEEEecCC
Q psy5810         153 EKAVILVANKADLER--RRQVTHSDGKKLAYAWG--VKFVETSVGL  194 (250)
Q Consensus       153 ~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~--~~~~evSa~~  194 (250)
                      ..|++.++|+.|..-  ...--.+...+++.+.+  .+++.+||+.
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            379999999998421  11122566778887776  7899999986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.65  E-value=7.6e-09  Score=91.48  Aligned_cols=80  Identities=9%  Similarity=-0.047  Sum_probs=40.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee------------------------EEEEEeCCCCccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF------------------------FIVYSDTNHTQRCLT  103 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~------------------------~i~i~Dt~g~~~~~~  103 (250)
                      ++|+|+|.+|||||||+| ++++....    ...|..+..+                        .+++|||+|..+...
T Consensus        23 ~kvgIVG~pnvGKSTL~n-~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFN-VLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCEEEECCSSSSHHHHHH-HHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CEEEEECCCCCCHHHHHH-HHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            459999999999999998 78874111    0112222221                        388999999863221


Q ss_pred             C--CccccccccccccCCCcEEEEEEeCCCHHhH
Q psy5810         104 P--MPFCSQVENFVQTYHPDVFVIVYSVIERKTF  135 (250)
Q Consensus       104 ~--~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf  135 (250)
                      .  ..-.....   .++++|++++|+|.++.+++
T Consensus       102 ~~~glg~~~l~---~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          102 NGQGLGNAFLS---HISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -----CCHHHH---HHHTSSSEEEEEEC------
T ss_pred             hhhHHHHHHHH---HHHhcCeEEEEEecCCCcch
Confidence            1  00000011   11289999999999875543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.43  E-value=1.5e-07  Score=88.38  Aligned_cols=99  Identities=14%  Similarity=0.028  Sum_probs=60.4

Q ss_pred             EEEEcCCCCchhhhchhhhcccccc------------cccc------ccCcee-----------EEEEEeCCCCccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVEN------------FVQT------YHPDVF-----------FIVYSDTNHTQRCLTP  104 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~------------~~~~------~~~~~~-----------~i~i~Dt~g~~~~~~~  104 (250)
                      |+|+|.-++|||||.. +++...+.            +.+.      -|.|+.           .+.+.||||.....  
T Consensus         5 i~IiaHvD~GKTTL~e-~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~--   81 (638)
T 3j25_A            5 IGVLAHVDAGKTTLTE-SLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL--   81 (638)
T ss_dssp             CEEECCSTTSSHHHHH-HHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH--
T ss_pred             EEEEcCCCCCHHHHHH-HHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH--
Confidence            8999999999999998 55432111            0000      011111           67789999964211  


Q ss_pred             CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                            .|...+++-+|++|+|+|....-.-+....|. ...+    .++|.+++.||.|..
T Consensus        82 ------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           82 ------AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRK----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             ------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHH----HTCSCEECCEECCSS
T ss_pred             ------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCeEEEEeccccc
Confidence                  11122223689999999998753333323332 2333    378999999999974

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.38  E-value=5.8e-07  Score=78.99  Aligned_cols=108  Identities=18%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEEe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVETS  191 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~evS  191 (250)
                      +++++++|+|++++.+     .|..++.+..  .+.|+++|+||+|+.+. ....+...++    ++..|+   .++++|
T Consensus        71 ~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iS  142 (369)
T 3ec1_A           71 SKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVS  142 (369)
T ss_dssp             HCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred             cCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence            6899999999999774     4555554432  47899999999998642 2333444443    566676   689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      |++|.|++++++.+.+.....  ....-.......++.++.+.+.
T Consensus       143 A~~g~gi~~L~~~I~~~~~~~--~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          143 AAKGIGMAKVMEAINRYREGG--DVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTTTBTHHHHHHHHHHHHTTS--CEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhhcccC--cEEEEcCCCCchHHHHHHHHhh
Confidence            999999999999887654211  0000111123556777777665

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.29  E-value=5.9e-07  Score=81.91  Aligned_cols=106  Identities=16%  Similarity=0.075  Sum_probs=59.8

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~  167 (250)
                      ++.++||+|...... ..... ......+..+|.+++|.|.+.....  + .....+..     ..|+ ++|.||.|...
T Consensus       185 DvvIIDTpG~~~~~~-~l~~e-l~~~~~~i~pd~vllVvDa~~g~~~--~-~~a~~~~~-----~~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          185 EIIIVDTSGRHKQED-SLFEE-MLQVANAIQPDNIVYVMDASIGQAC--E-AQAKAFKD-----KVDVASVIVTKLDGHA  254 (504)
T ss_dssp             CEEEEEECCCCTTCH-HHHHH-HHHHHHHHCCSEEEEEEETTCCTTH--H-HHHHHHHH-----HHCCCCEEEECTTSCC
T ss_pred             cEEEEeCCCCcccch-hHHHH-HHHHHhhhcCceEEEEEeccccccH--H-HHHHHHHh-----hcCceEEEEeCCcccc
Confidence            688999999753110 00000 0000001168999999999875431  1 12222321     2564 88899999753


Q ss_pred             CCccCHHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKF------------------VETSVGLVYK-TDELLVGIARQ  208 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~------------------~evSa~~~~~-I~~lf~~l~~~  208 (250)
                      ...    .+.......+.|+                  ..+|+..|.| +.++++++.+.
T Consensus       255 ~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          255 KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            221    1223334555553                  3468899988 98888888754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.28  E-value=6.2e-08  Score=85.23  Aligned_cols=138  Identities=10%  Similarity=-0.057  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccc------cccccccccCcee--------EEEEEeCCCCccc--cCCCccccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF--------FIVYSDTNHTQRC--LTPMPFCSQVENFVQ  116 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~--------~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~  116 (250)
                      +|+++|.+|||||||+| .+.+.      ........+.|..        .+.++||||-...  +....-.........
T Consensus       164 ~i~~vG~~nvGKStliN-~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~  242 (369)
T 3ec1_A          164 DVYVVGCTNVGKSTFIN-RIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITP  242 (369)
T ss_dssp             CEEEECCTTSSHHHHHH-HHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred             cEEEEcCCCCchHHHHH-HHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence            49999999999999999 77663      1111112222222        3568999996421  111111111112211


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      .+..+.++++.|.....-+..+.. +.    .....+.|++++.||.|....... ......+.+..|......++.+..
T Consensus       243 ~~~i~~~~~~l~~~~~~~~g~l~~-l~----~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~  316 (369)
T 3ec1_A          243 KREIHPRVYQLNEGQTLFFGGLAR-LD----YIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAA  316 (369)
T ss_dssp             SSCCCCEEEEECTTEEEEETTTEE-EE----EEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred             ccccCceEEEEcCCceEEECCEEE-EE----EccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhh
Confidence            237899999998743211111110 11    112346899999999997542222 233344556667666666655544


Q ss_pred             C
Q psy5810         197 K  197 (250)
Q Consensus       197 ~  197 (250)
                      +
T Consensus       317 ~  317 (369)
T 3ec1_A          317 E  317 (369)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.27  E-value=1e-06  Score=74.52  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=74.0

Q ss_pred             CCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         119 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      .+|+++.|+|+.++.+..  .+.+|+         .+.|.++|.||+|+.+...  .+...++.++.+++++++||+++.
T Consensus        23 ~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~   91 (282)
T 1puj_A           23 LIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQ   91 (282)
T ss_dssp             GCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCT
T ss_pred             hCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcc
Confidence            799999999999988764  344332         4789999999999864211  122233444557899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccCC
Q psy5810         197 KTDELLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       197 ~I~~lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  238 (250)
                      |+.+++..+.+.+..........            .......+++++.+.+++.
T Consensus        92 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A           92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             TGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence            99999998877665432110000            0011367788888887764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.20  E-value=5.9e-06  Score=78.52  Aligned_cols=100  Identities=12%  Similarity=-0.032  Sum_probs=59.6

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce------------------eEEEEEeCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV------------------FFIVYSDTN   96 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~------------------~~i~i~Dt~   96 (250)
                      .|+|+|.-++|||||.. +++...+.            +.+      .-|.|+                  ..+.+.|||
T Consensus        15 Ni~IiaHvd~GKTTL~d-~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTE-RVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEECCSSSCHHHHHH-HHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             EEEEEcCCCCCHHHHHH-HHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            39999999999999998 55432110            100      001111                  147788999


Q ss_pred             CCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          97 HTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        97 g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      |.-.      |.  .|...+++-+|++|+|+|....-.-+...-|.. ..+    .++|.+++.||.|..
T Consensus        94 GHvD------F~--~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           94 GHVD------FT--IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             SCTT------CH--HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----HTCCEEEEEECSSST
T ss_pred             CCcc------cH--HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH----cCCCeEEEEcccccc
Confidence            8631      11  111122225899999999987543333333333 333    379999999999973

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.13  E-value=1e-05  Score=68.00  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+|++|+|||||++ .+.+
T Consensus         3 f~v~lvG~nGaGKSTLln-~L~g   24 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVN-TLFK   24 (270)
T ss_dssp             EEEEEEESSSSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHhC
Confidence            569999999999999998 6655

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.13  E-value=6.7e-08  Score=84.96  Aligned_cols=133  Identities=9%  Similarity=-0.074  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-----cc--ccccccCcee--------EEEEEeCCCCccc--cCCCcccccccccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-----EN--FVQTYHPDVF--------FIVYSDTNHTQRC--LTPMPFCSQVENFV  115 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-----~~--~~~~~~~~~~--------~i~i~Dt~g~~~~--~~~~~~~~~~~~~~  115 (250)
                      +|+++|.+|||||||+| .+.+..     ..  .....+.|..        .+.++||||-...  +....-........
T Consensus       162 ~i~~vG~~nvGKStliN-~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~  240 (368)
T 3h2y_A          162 DVYVVGCTNVGKSTFIN-RMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT  240 (368)
T ss_dssp             CEEEEEBTTSSHHHHHH-HHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred             eEEEecCCCCChhHHHH-HHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence            49999999999999999 776631     01  1111122221        3578999996421  11111111111112


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                      .....+.+++++|.....-+..+.. +.    .....+.|++++.||.|....... ......+.+..|..++..++
T Consensus       241 ~~~~i~~~~~~l~~~~~~~~g~l~~-~d----~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          241 PTKEIKPMVFQLNEEQTLFFSGLAR-FD----YVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE-EE----EEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             cccccCceEEEEcCCCEEEEcceEE-EE----EecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence            2236788888887632211111110 11    112346899999999997542222 22333445555655444443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.05  E-value=2.4e-05  Score=69.55  Aligned_cols=149  Identities=15%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc----ccc--ccc-c-----c---cCceeEEEEEeCCCCccccCCCccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ----VEN--FVQ-T-----Y---HPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~----~~~--~~~-~-----~---~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~  116 (250)
                      ..++|+|++|||||||+| .+.+-    .+.  +.. .     +   .+....+.+||++|-...  ........+. ..
T Consensus        70 ~~valvG~nGaGKSTLln-~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~-~~  145 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFIN-TLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEK-MK  145 (413)
T ss_dssp             EEEEEEECTTSSHHHHHH-HHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHH-TT
T ss_pred             eEEEEECCCCCcHHHHHH-HHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHHHHHHH-cC
Confidence            359999999999999998 77662    110  000 0     0   011124677888874311  0000100110 01


Q ss_pred             cCCCcEEEEEEeCC--CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-------CCCccCHHHH----HHHH---
Q psy5810         117 TYHPDVFVIVYSVI--ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-------RRRQVTHSDG----KKLA---  180 (250)
Q Consensus       117 ~~~ad~iilV~D~~--~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-------~~~~v~~~~~----~~~~---  180 (250)
                      +.+.+..++ +|..  .+....    +...+..    .+.|+++|.||.|+.       .-.....++.    .+++   
T Consensus       146 L~~~~~~~~-lS~G~~~kqrv~----la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~  216 (413)
T 1tq4_A          146 FYEYDFFII-ISATRFKKNDID----IAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT  216 (413)
T ss_dssp             GGGCSEEEE-EESSCCCHHHHH----HHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCccCCeEE-eCCCCccHHHHH----HHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            113455554 7776  332221    2222222    367999999999962       1111223333    2332   


Q ss_pred             -HHhC---CeEEEEec--CCCCCHHHHHHHHHHHHHhhh
Q psy5810         181 -YAWG---VKFVETSV--GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       181 -~~~~---~~~~evSa--~~~~~I~~lf~~l~~~i~~~~  213 (250)
                       .+.+   -..+.+|+  ..+.|++++.+.+...+.+..
T Consensus       217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             1222   24788999  777789999999998876654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.94  E-value=2.3e-06  Score=71.63  Aligned_cols=47  Identities=6%  Similarity=-0.118  Sum_probs=30.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ   99 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~   99 (250)
                      ++++++|.+|||||||+| ++.+... ....+.+.+..        .+++|||+|..
T Consensus       100 ~~v~~vG~~~vGKSslin-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIIN-KLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHH-HHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHH-HHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence            579999999999999999 7776421 11222222211        56899999975

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.93  E-value=2.7e-05  Score=69.44  Aligned_cols=25  Identities=8%  Similarity=0.100  Sum_probs=20.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ..++++|+|++|+|||||++ .+.+.
T Consensus        41 ei~~vaLvG~nGaGKSTLln-~L~G~   65 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMD-TLFNT   65 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHH-HHHTS
T ss_pred             CeeEEEEECCCCCCHHHHHH-HHhCc
Confidence            34569999999999999998 67663

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.91  E-value=5.9e-06  Score=69.89  Aligned_cols=49  Identities=8%  Similarity=-0.099  Sum_probs=31.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCce--------eEEEEEeCCCCc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV--------FFIVYSDTNHTQ   99 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~--------~~i~i~Dt~g~~   99 (250)
                      ..++++++|.+|||||||+| ++.+... ......+.|.        ..+.+|||||-.
T Consensus       119 ~~~~v~~vG~~nvGKSsliN-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLIN-RLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHH-HHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHH-HHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence            45779999999999999999 7776421 1111112221        157899999974

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.83  E-value=3e-05  Score=69.42  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|.......  .........++..+|.+++|.|.+....-..   ....+.+    .-.+..+|.||.|....
T Consensus       184 DvVIIDTaGrl~~d~~--lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~----~~~i~gVIlTKlD~~~~  254 (443)
T 3dm5_A          184 DIIIVDTAGRHKEDKA--LIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE----ATPIGSIIVTKLDGSAK  254 (443)
T ss_dssp             SEEEEECCCCSSCCHH--HHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----SCTTEEEEEECCSSCSS
T ss_pred             CEEEEECCCcccchHH--HHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----hCCCeEEEEECCCCccc
Confidence            6778999985321100  0000111111125799999999876533222   2223321    12356788899997531


Q ss_pred             CccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                          ...+.......+.|+..++.  |+++
T Consensus       255 ----gG~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          255 ----GGGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             ----HHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             ----ccHHHHHHHHHCCCEEEEEc--CCCh
Confidence                23345556677889877775  5554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.80  E-value=2.6e-05  Score=69.68  Aligned_cols=97  Identities=11%  Similarity=0.060  Sum_probs=53.6

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      ++.+.||+|.........+........++..++.+++|.|.+....-..   ....+.+.    -.+..+|.||.|... 
T Consensus       181 DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~----~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          181 DIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA----SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             SEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH----CSSEEEEEECGGGCS-
T ss_pred             CEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc----cCCcEEEEecccccc-
Confidence            5678999985321011111111111111125799999999986533222   22333221    235778899999753 


Q ss_pred             CccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                         ....+.......+.|+..++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               223455566678999877775  6554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.74  E-value=1.3e-05  Score=67.11  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=65.7

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|+++.|+|+.++.+.....  +. +     . +.|.++|.||+|+.+...  .++..++.++.|.++ .+||+++.|+
T Consensus        21 ~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi   88 (262)
T 3cnl_A           21 LVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRK   88 (262)
T ss_dssp             TCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred             hCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCH
Confidence            899999999999987664311  11 1     1 789999999999864211  122233445567888 9999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810         199 DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW  238 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (250)
                      ++++..+...+.    ..-.-.......+++++.+.+++.
T Consensus        89 ~~L~~~l~~~~~----~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A           89 VLLKKLSFDRLA----RVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             HHHHHHCCCTTC----EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhh----heEEeCCCCCCHHHHHHHHhcccc
Confidence            998877654320    000000111345666777666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.74  E-value=1.4e-05  Score=68.37  Aligned_cols=83  Identities=16%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             CCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHHHhCCeEEEEecCC
Q psy5810         118 YHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                      +++|.+++|.|+.+|. +...+..++....    ..++|.++|.||+|+.+....  ..++..++....|.+.+.+||.+
T Consensus        85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~  160 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD  160 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             HhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4899999999998764 4445555554432    357899999999999653210  01223334445688999999999


Q ss_pred             CCCHHHHHHH
Q psy5810         195 VYKTDELLVG  204 (250)
Q Consensus       195 ~~~I~~lf~~  204 (250)
                      +.|+++++..
T Consensus       161 ~~g~~~L~~~  170 (307)
T 1t9h_A          161 QDSLADIIPH  170 (307)
T ss_dssp             HTTCTTTGGG
T ss_pred             CCCHHHHHhh
Confidence            9998876654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.72  E-value=1.8e-05  Score=70.89  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=46.9

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCC-c-EEEEeeCCCcc
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-A-VILVANKADLE  166 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~-p-iilv~nK~Dl~  166 (250)
                      ++.+.||+|..... ..... .......+..+|.+++|.|.+....   .......+   .  ... | ..+|.||.|..
T Consensus       182 D~vIIDT~G~~~~~-~~l~~-~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~--~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          182 DVLIIDTAGRHKEE-KGLLE-EMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K--EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SEEEEECCCSCSSH-HHHHH-HHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H--TTSCSCEEEEEECSSSC
T ss_pred             CEEEEcCCCCcccc-HHHHH-HHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h--hcccCCeEEEEeCCCCc
Confidence            67889999965210 00011 0111122226899999999876532   22222222   1  234 5 88999999974


Q ss_pred             CCCccCHHHHHHHHHHhCCeEEEE
Q psy5810         167 RRRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       167 ~~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                      ..    ...+..+....+.++..+
T Consensus       252 ~~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          252 AK----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ST----THHHHHHHHHSSCCEEEE
T ss_pred             cc----hHHHHHHHHHHCCCEEEe
Confidence            31    122344566667664443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.49  E-value=0.00026  Score=61.63  Aligned_cols=82  Identities=16%  Similarity=0.059  Sum_probs=55.5

Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH---HHHhCCeEEEEecCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL---AYAWGVKFVETSVGL  194 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~~~~~~~evSa~~  194 (250)
                      +++|.+++|.+..-..+...+..++.....    .++|.+||.||+|+.+...  .+....+   ....|++.+.+||.+
T Consensus       129 anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          129 ANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             ECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             hcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCC
Confidence            489999999776433355556666554422    4678899999999864221  1113333   345688999999999


Q ss_pred             CCCHHHHHHHH
Q psy5810         195 VYKTDELLVGI  205 (250)
Q Consensus       195 ~~~I~~lf~~l  205 (250)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999877643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.27  E-value=5.4e-05  Score=68.45  Aligned_cols=85  Identities=8%  Similarity=0.006  Sum_probs=51.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccc-cccccccCce-----------eEEEEEeCCCCc----cccC--------CCc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV-----------FFIVYSDTNHTQ----RCLT--------PMP  106 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~-----------~~i~i~Dt~g~~----~~~~--------~~~  106 (250)
                      .++|+++|.+|+||||+.. ++..... .+.++.+...           ....+||..|++    +..+        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~-~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISK-KLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHH-HHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999996 7765211 1111111000           012467887762    1111        122


Q ss_pred             cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHh
Q psy5810         107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWD  147 (250)
Q Consensus       107 ~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~  147 (250)
                      +.          .+.+.++|+|.++. +++....|+..+.+
T Consensus       118 l~----------~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          118 LS----------EEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HH----------TTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HH----------hCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            22          56888999999998 56667778776654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.25  E-value=0.00019  Score=66.57  Aligned_cols=25  Identities=8%  Similarity=0.053  Sum_probs=21.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ..+.|+|+|.+|||||||+| ++.+.
T Consensus        37 ~~~~VaivG~pnvGKStLiN-~L~g~   61 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMN-KLAGK   61 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHH-HHTTC
T ss_pred             CCcEEEEECCCCCCHHHHHH-hHcCC
Confidence            45679999999999999999 78774

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.20  E-value=0.00052  Score=58.30  Aligned_cols=98  Identities=17%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  167 (250)
                      ++.+.||+|...................+..+|.+++|.|.+...   +.....+.+.+     ..| ..+|.||.|...
T Consensus       182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCT
T ss_pred             CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCc
Confidence            577899998753000000000000001111689999999986432   22222233321     345 678889999643


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                          ....+...+...+.|+..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                12345567778888987776  5666543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.02  E-value=0.00085  Score=57.77  Aligned_cols=69  Identities=10%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+|-.+++.|.+...   ++...+..+.+.   .+ ..+++.||.|....    .-.+.......+.|+..++  +|+++
T Consensus       241 ~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          241 KPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDADAR----GGAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             CCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             cCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence            578889999976543   233333333221   12 34667799996331    2335566777899977776  66665


Q ss_pred             HH
Q psy5810         199 DE  200 (250)
Q Consensus       199 ~~  200 (250)
                      ++
T Consensus       308 ~d  309 (328)
T 3e70_C          308 DD  309 (328)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.39  E-value=0.004  Score=58.04  Aligned_cols=21  Identities=10%  Similarity=0.140  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|||||||++ .+.+
T Consensus        47 ~iaIvG~nGsGKSTLL~-~I~G   67 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLE-ALSG   67 (608)
T ss_dssp             CEECCCCTTSCHHHHHH-HHHS
T ss_pred             eEEEECCCCChHHHHHH-HHhC
Confidence            39999999999999997 6665

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.30  E-value=0.0036  Score=49.24  Aligned_cols=85  Identities=12%  Similarity=-0.000  Sum_probs=51.6

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  167 (250)
                      ++.++|+++...........          .+|.++++.+.+...  ..+..+++.+.+... ..+.++.+|.|+.|...
T Consensus        77 D~viiD~~~~~~~~~~~~l~----------~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           77 DFAIVDGAGSLSVITSAAVM----------VSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             SEEEEECCSSSSHHHHHHHH----------HCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CEEEEECCCCCCHHHHHHHH----------HCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            56678888654222222222          589999999876544  566666666644321 23567799999998432


Q ss_pred             CCccCHHHHHHHHHHhCCeEE
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~  188 (250)
                        . ...+..++.+.++.+++
T Consensus       145 --~-~~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          145 --T-MLNVLKESIKDTGVKAF  162 (206)
T ss_dssp             --E-EEHHHHHHHHHHTCCBC
T ss_pred             --h-HHHHHHHHHHHcCCcee
Confidence              1 22445666666776654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.25  E-value=0.0013  Score=51.47  Aligned_cols=21  Identities=10%  Similarity=0.169  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++|+|++|+|||||++ .+.+
T Consensus         2 ~i~l~G~nGsGKTTLl~-~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVK-KIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            58999999999999996 6555

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.13  E-value=0.0017  Score=50.62  Aligned_cols=21  Identities=5%  Similarity=0.178  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|||||||++ .+.+
T Consensus         7 ~i~i~GpsGsGKSTL~~-~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKN-TLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHh
Confidence            38999999999999997 6655

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.00  E-value=0.002  Score=51.00  Aligned_cols=20  Identities=5%  Similarity=0.150  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus         7 i~lvGpsGaGKSTLl~-~L~~   26 (198)
T 1lvg_A            7 VVLSGPSGAGKSTLLK-KLFQ   26 (198)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            8999999999999996 6654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.80  E-value=0.0033  Score=48.93  Aligned_cols=21  Identities=0%  Similarity=0.248  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|.+|||||||++ .+.+
T Consensus        11 ~i~l~G~~GsGKSTl~~-~La~   31 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAE-ALAN   31 (191)
T ss_dssp             EEEEEECTTSCHHHHHH-HHHT
T ss_pred             EEEEECCCCCCHHHHHH-HHHh
Confidence            39999999999999996 6766

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.79  E-value=0.0032  Score=48.58  Aligned_cols=20  Identities=0%  Similarity=0.109  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+..
T Consensus        12 ~~l~G~nGsGKSTl~~-~~~~   31 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAK-KHFK   31 (171)
T ss_dssp             EEEECCTTSCHHHHHH-HHSC
T ss_pred             EEEECCCCCCHHHHHH-HHcc
Confidence            8999999999999996 4443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.73  E-value=0.0031  Score=49.63  Aligned_cols=20  Identities=15%  Similarity=0.366  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        10 i~l~Gp~GsGKSTl~~-~L~~   29 (205)
T 3tr0_A           10 FIISAPSGAGKTSLVR-ALVK   29 (205)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECcCCCCHHHHHH-HHHh
Confidence            8999999999999996 6655

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.63  E-value=0.0036  Score=50.62  Aligned_cols=20  Identities=15%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        19 i~l~GpsGsGKSTLlk-~L~g   38 (219)
T 1s96_A           19 YIVSAPSGAGKSSLIQ-ALLK   38 (219)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999997 6655

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.63  E-value=0.0036  Score=49.79  Aligned_cols=21  Identities=5%  Similarity=0.132  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|++|||||||++ .+..
T Consensus        21 ~ivl~GPSGaGKsTL~~-~L~~   41 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKN-ALLS   41 (197)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECcCCCCHHHHHH-HHHh
Confidence            38999999999999997 6665

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.60  E-value=0.0037  Score=49.73  Aligned_cols=20  Identities=0%  Similarity=0.034  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        23 ~~l~GpnGsGKSTLl~-~l~g   42 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVR-CLRE   42 (207)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            8999999999999996 6655

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.59  E-value=0.0037  Score=50.30  Aligned_cols=20  Identities=5%  Similarity=0.164  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        26 ~~lvGpsGsGKSTLl~-~L~g   45 (218)
T 1z6g_A           26 LVICGPSGVGKGTLIK-KLLN   45 (218)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            8999999999999996 6665

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.52  E-value=0.0047  Score=48.66  Aligned_cols=20  Identities=5%  Similarity=0.210  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||++ ++..
T Consensus         4 IVi~GPSG~GK~Tl~~-~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLK-KLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.50  E-value=0.0046  Score=49.16  Aligned_cols=22  Identities=9%  Similarity=0.291  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|++|+|||||++ .+.+
T Consensus        23 ~~v~I~G~sGsGKSTl~~-~l~~   44 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSN-PLAA   44 (208)
T ss_dssp             EEEEEECCTTSCTHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5555

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.43  E-value=0.0047  Score=49.22  Aligned_cols=20  Identities=0%  Similarity=0.097  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||++ .+..
T Consensus        11 i~l~GpsGsGKsTl~~-~L~~   30 (208)
T 3tau_A           11 IVLSGPSGVGKGTVRE-AVFK   30 (208)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECcCCCCHHHHHH-HHHh
Confidence            8999999999999996 6665

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.39  E-value=0.0057  Score=49.94  Aligned_cols=20  Identities=0%  Similarity=0.004  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        34 ~~iiG~nGsGKSTLl~-~l~G   53 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLN-IIGC   53 (235)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            8999999999999995 5554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.25  E-value=0.0067  Score=49.09  Aligned_cols=20  Identities=5%  Similarity=-0.051  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        33 ~~iiG~nGsGKSTLl~-~l~G   52 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLY-ILGL   52 (224)
T ss_dssp             EEEEECTTSCHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5555

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.22  E-value=0.0066  Score=48.05  Aligned_cols=20  Identities=15%  Similarity=0.159  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+|||||||++ .+..
T Consensus        15 i~l~G~sGsGKsTl~~-~L~~   34 (204)
T 2qor_A           15 LVVCGPSGVGKGTLIK-KVLS   34 (204)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999997 6654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.22  E-value=0.0061  Score=46.60  Aligned_cols=20  Identities=0%  Similarity=0.072  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+||||||+.+ .+.+
T Consensus         7 i~l~G~~GsGKSTl~~-~La~   26 (173)
T 1kag_A            7 IFLVGPMGAGKSTIGR-QLAQ   26 (173)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.18  E-value=0.0069  Score=52.66  Aligned_cols=21  Identities=10%  Similarity=0.126  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|.+|||||||+| .+.+
T Consensus       217 ~~~lvG~sG~GKSTLln-~L~g  237 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLN-ALLG  237 (358)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHC
T ss_pred             EEEEECCCCccHHHHHH-HHhc
Confidence            38999999999999998 7776

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.16  E-value=0.0064  Score=46.51  Aligned_cols=20  Identities=15%  Similarity=0.177  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+.|+|||||++ .+++
T Consensus        36 v~L~G~nGaGKTTLlr-~l~g   55 (158)
T 1htw_A           36 VYLNGDLGAGKTTLTR-GMLQ   55 (158)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999995 6665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.15  E-value=0.0064  Score=47.83  Aligned_cols=21  Identities=0%  Similarity=0.120  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+++ .+.+
T Consensus         8 ~i~l~G~~GsGKSTl~~-~L~~   28 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRK-RIFE   28 (207)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            38999999999999996 6654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.13  E-value=0.0072  Score=45.96  Aligned_cols=21  Identities=5%  Similarity=0.153  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         3 ~i~l~G~~GsGKsT~~~-~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAA-KLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.06  E-value=0.0091  Score=48.77  Aligned_cols=20  Identities=15%  Similarity=0.139  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        34 ~~i~G~nGsGKSTLl~-~l~G   53 (237)
T 2cbz_A           34 VAVVGQVGCGKSSLLS-ALLA   53 (237)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5655

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.06  E-value=0.0083  Score=45.46  Aligned_cols=19  Identities=0%  Similarity=0.072  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCchhhhchhhh
Q psy5810          53 FFIVHSDTNHTQRCLTSMPF   72 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~   72 (250)
                      .|+|+|.+||||||+.. .+
T Consensus         3 ~I~l~G~~GsGKsT~a~-~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAK-LL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHH-HH
Confidence            48999999999999996 66

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.04  E-value=0.0085  Score=49.71  Aligned_cols=20  Identities=0%  Similarity=-0.061  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        35 ~~liG~nGsGKSTLlk-~l~G   54 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLR-CINF   54 (262)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5555

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.03  E-value=0.0084  Score=49.13  Aligned_cols=20  Identities=5%  Similarity=0.081  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        27 ~~liG~nGsGKSTLl~-~l~G   46 (240)
T 2onk_A           27 CVLLGPTGAGKSVFLE-LIAG   46 (240)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5655

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.02  E-value=0.0096  Score=48.78  Aligned_cols=20  Identities=5%  Similarity=-0.019  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        31 ~~i~G~nGsGKSTLl~-~l~G   50 (243)
T 1mv5_A           31 IAFAGPSGGGKSTIFS-LLER   50 (243)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999996 5555

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.02  E-value=0.0089  Score=48.11  Aligned_cols=20  Identities=10%  Similarity=0.119  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        38 ~~iiG~NGsGKSTLlk-~l~G   57 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLK-TIST   57 (214)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5655

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.02  E-value=0.0093  Score=48.64  Aligned_cols=20  Identities=0%  Similarity=-0.001  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      .|+|+|.+|||||||++ .+.
T Consensus        29 ~i~l~G~~GsGKSTl~k-~La   48 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQ-RIA   48 (246)
T ss_dssp             EEEEECCTTSSHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHH-HHH
Confidence            49999999999999996 666

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.01  E-value=0.0095  Score=48.99  Aligned_cols=20  Identities=10%  Similarity=0.032  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        38 ~~i~G~nGsGKSTLl~-~l~G   57 (247)
T 2ff7_A           38 IGIVGRSGSGKSTLTK-LIQR   57 (247)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5555

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.99  E-value=0.0076  Score=46.91  Aligned_cols=20  Identities=5%  Similarity=0.190  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|.+|+|||||++ .+..
T Consensus         5 i~l~G~~GaGKSTl~~-~L~~   24 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCK-RLAA   24 (189)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            7899999999999996 5653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.99  E-value=0.009  Score=50.01  Aligned_cols=20  Identities=10%  Similarity=0.069  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        37 ~~iiGpnGsGKSTLl~-~l~G   56 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQ-NFNG   56 (275)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHHc
Confidence            8999999999999996 5555

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.94  E-value=0.0095  Score=49.59  Aligned_cols=20  Identities=5%  Similarity=0.032  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        40 ~~liG~nGsGKSTLl~-~l~G   59 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLR-LLTG   59 (266)
T ss_dssp             EEEECCTTSCHHHHHH-HHTS
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            8999999999999996 5555

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.93  E-value=0.0078  Score=47.67  Aligned_cols=22  Identities=9%  Similarity=0.132  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+|+|||||++ .+.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~-~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQ-ALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHHH-HHHH
Confidence            349999999999999996 5555

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.92  E-value=0.0092  Score=45.68  Aligned_cols=21  Identities=5%  Similarity=0.097  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         4 ~I~i~G~~GsGKST~a~-~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAR-EFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEecCCCCCHHHHHH-HHHh
Confidence            48999999999999996 6654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.92  E-value=0.0094  Score=49.27  Aligned_cols=20  Identities=5%  Similarity=0.086  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        36 ~~liG~nGsGKSTLlk-~l~G   55 (257)
T 1g6h_A           36 TLIIGPNGSGKSTLIN-VITG   55 (257)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5555

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.92  E-value=0.0082  Score=47.34  Aligned_cols=21  Identities=5%  Similarity=0.110  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+|+|||||++ .+.+
T Consensus        31 ~i~l~G~~GsGKSTl~~-~L~~   51 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAH-GVAD   51 (200)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999996 5554

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.90  E-value=0.009  Score=47.48  Aligned_cols=22  Identities=0%  Similarity=-0.040  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.+||||||+.. .+..
T Consensus         1 m~I~l~G~~GsGKsT~a~-~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAE-QIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            369999999999999996 5644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.88  E-value=0.0095  Score=50.39  Aligned_cols=20  Identities=5%  Similarity=-0.039  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+.+
T Consensus       172 v~l~G~sG~GKSTll~-~l~g  191 (301)
T 1u0l_A          172 STMAGLSGVGKSSLLN-AINP  191 (301)
T ss_dssp             EEEECSTTSSHHHHHH-HHST
T ss_pred             EEEECCCCCcHHHHHH-Hhcc
Confidence            8999999999999997 6665

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.88  E-value=0.01  Score=49.38  Aligned_cols=20  Identities=5%  Similarity=0.019  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        53 ~~liG~NGsGKSTLlk-~l~G   72 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLR-CLNL   72 (263)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEEcCCCCcHHHHHH-HHHc
Confidence            8999999999999996 5555

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.87  E-value=0.01  Score=48.18  Aligned_cols=20  Identities=15%  Similarity=0.110  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        37 ~~i~G~nGsGKSTLl~-~l~G   56 (229)
T 2pze_A           37 LAVAGSTGAGKTSLLM-MIMG   56 (229)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5655

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.87  E-value=0.0093  Score=46.67  Aligned_cols=21  Identities=0%  Similarity=0.093  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         2 ~I~i~G~~GsGKsT~~~-~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISA-EISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCccCHHHHHH-HHHH
Confidence            58999999999999996 5654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.85  E-value=0.01  Score=48.55  Aligned_cols=20  Identities=5%  Similarity=0.016  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        35 ~~l~G~nGsGKSTLl~-~l~G   54 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLS-AIAG   54 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5555

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.85  E-value=0.0092  Score=47.48  Aligned_cols=22  Identities=0%  Similarity=-0.044  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.+||||||+.. .+..
T Consensus         1 m~I~l~G~~GsGKsT~a~-~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGE-RIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            369999999999999996 5644

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.84  E-value=0.0078  Score=48.57  Aligned_cols=19  Identities=5%  Similarity=0.207  Sum_probs=13.6

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++|+|++|||||||++ .+.
T Consensus        30 i~l~Gp~GsGKSTl~~-~L~   48 (231)
T 3lnc_A           30 LVLSSPSGCGKTTVAN-KLL   48 (231)
T ss_dssp             EEEECSCC----CHHH-HHH
T ss_pred             EEEECCCCCCHHHHHH-HHH
Confidence            8999999999999997 677

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.81  E-value=0.012  Score=45.50  Aligned_cols=21  Identities=10%  Similarity=-0.058  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus         3 ~I~i~G~~GsGKsT~~~-~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLA-KVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.81  E-value=0.011  Score=48.75  Aligned_cols=20  Identities=5%  Similarity=0.077  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        29 ~~liG~NGsGKSTLlk-~l~G   48 (249)
T 2qi9_C           29 LHLVGPNGAGKSTLLA-RMAG   48 (249)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            8999999999999996 5555

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.80  E-value=0.0042  Score=52.88  Aligned_cols=21  Identities=5%  Similarity=0.080  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++++|.+|||||||+| .+.+
T Consensus       175 ~~~lvG~sG~GKSTLln-~L~g  195 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLN-AISP  195 (307)
T ss_dssp             EEEEEESHHHHHHHHHH-HHCC
T ss_pred             EEEEECCCCCCHHHHHH-Hhcc
Confidence            49999999999999998 7766

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.79  E-value=0.012  Score=48.82  Aligned_cols=20  Identities=5%  Similarity=0.067  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        49 ~~i~G~nGsGKSTLl~-~l~G   68 (260)
T 2ghi_A           49 CALVGHTGSGKSTIAK-LLYR   68 (260)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999996 5655

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.79  E-value=0.0092  Score=47.78  Aligned_cols=20  Identities=5%  Similarity=-0.067  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        25 ~~liG~nGsGKSTLl~-~l~G   44 (208)
T 3b85_A           25 VFGLGPAGSGKTYLAM-AKAV   44 (208)
T ss_dssp             EEEECCTTSSTTHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 6665

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.78  E-value=0.011  Score=48.91  Aligned_cols=20  Identities=5%  Similarity=-0.017  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        44 ~~l~G~NGsGKSTLlk-~l~G   63 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLR-IIST   63 (256)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5555

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.77  E-value=0.01  Score=48.78  Aligned_cols=20  Identities=5%  Similarity=0.042  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        32 ~~l~G~nGsGKSTLlk-~l~G   51 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGK-ILAG   51 (250)
T ss_dssp             EEEECSTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6665

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.75  E-value=0.011  Score=49.30  Aligned_cols=20  Identities=0%  Similarity=-0.021  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        48 ~~i~G~nGsGKSTLlk-~l~G   67 (271)
T 2ixe_A           48 TALVGPNGSGKSTVAA-LLQN   67 (271)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 5555

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.74  E-value=0.012  Score=49.23  Aligned_cols=20  Identities=10%  Similarity=0.097  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        50 ~~liG~NGsGKSTLlk-~l~G   69 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLN-ILNA   69 (279)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            8999999999999996 5555

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.70  E-value=0.011  Score=49.09  Aligned_cols=20  Identities=5%  Similarity=0.179  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        49 ~~l~G~NGsGKSTLlk-~l~G   68 (267)
T 2zu0_C           49 HAIMGPNGSGKSTLSA-TLAG   68 (267)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6666

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.68  E-value=0.0098  Score=49.32  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~-~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIA-SMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHH-HHHH
T ss_pred             EEEEECCCCccHHHHHH-HHHH
Confidence            39999999999999996 6555

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.67  E-value=0.01  Score=46.75  Aligned_cols=20  Identities=5%  Similarity=0.145  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+||||||+.. .+..
T Consensus        21 I~l~G~~GsGKSTla~-~L~~   40 (202)
T 3t61_A           21 IVVMGVSGSGKSSVGE-AIAE   40 (202)
T ss_dssp             EEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.67  E-value=0.01  Score=46.72  Aligned_cols=20  Identities=5%  Similarity=0.021  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus         4 i~i~G~nG~GKTTll~-~l~g   23 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIH-KASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHH-HHHH
T ss_pred             EEEECCCCChHHHHHH-HHHh
Confidence            8999999999999996 5554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.65  E-value=0.012  Score=45.13  Aligned_cols=20  Identities=10%  Similarity=0.162  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+||||||+.. .+..
T Consensus         6 i~l~G~~GsGKST~a~-~La~   25 (178)
T 1qhx_A            6 IILNGGSSAGKSGIVR-CLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.64  E-value=0.011  Score=45.40  Aligned_cols=21  Identities=5%  Similarity=0.225  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+|+||||++. .+..
T Consensus        10 ~i~l~G~~GsGKSTl~~-~l~~   30 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVAS-EVAH   30 (175)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            49999999999999995 5544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.63  E-value=0.013  Score=46.08  Aligned_cols=21  Identities=10%  Similarity=0.116  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus        27 ~i~l~G~~GsGKsTl~~-~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGK-AFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            39999999999999995 6554

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.62  E-value=0.012  Score=48.47  Aligned_cols=20  Identities=10%  Similarity=0.087  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        34 ~~l~G~nGsGKSTLl~-~l~G   53 (253)
T 2nq2_C           34 LAVLGQNGCGKSTLLD-LLLG   53 (253)
T ss_dssp             EEEECCSSSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5655

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.61  E-value=0.009  Score=46.14  Aligned_cols=20  Identities=5%  Similarity=-0.029  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+|+. .+.+
T Consensus        41 ~~l~G~~G~GKTtL~~-~i~~   60 (180)
T 3ec2_A           41 LTFVGSPGVGKTHLAV-ATLK   60 (180)
T ss_dssp             EEECCSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6655

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.60  E-value=0.051  Score=42.42  Aligned_cols=20  Identities=0%  Similarity=0.092  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        41 ~ll~G~~G~GKT~l~~-~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAI-ALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.60  E-value=0.013  Score=48.77  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        36 ~~liG~nGsGKSTLl~-~i~G   55 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQ-IVAG   55 (266)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            8999999999999996 5555

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.60  E-value=0.012  Score=49.92  Aligned_cols=19  Identities=11%  Similarity=0.149  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++++|.+|||||||+| .+.
T Consensus       168 ~~l~G~sG~GKSTLln-~l~  186 (302)
T 2yv5_A          168 CILAGPSGVGKSSILS-RLT  186 (302)
T ss_dssp             EEEECSTTSSHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHH-HHH
Confidence            8999999999999998 665

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.59  E-value=0.013  Score=45.63  Aligned_cols=20  Identities=5%  Similarity=0.023  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|.+|+|||||++ ++..
T Consensus         9 i~i~G~sGsGKTTl~~-~l~~   28 (174)
T 1np6_A            9 LAFAAWSGTGKTTLLK-KLIP   28 (174)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6665

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.54  E-value=0.012  Score=50.04  Aligned_cols=20  Identities=10%  Similarity=0.122  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus       129 vaIvGpsGsGKSTLl~-lL~g  148 (305)
T 2v9p_A          129 LAFIGPPNTGKSMLCN-SLIH  148 (305)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHhh
Confidence            9999999999999996 6554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.52  E-value=0.016  Score=47.83  Aligned_cols=24  Identities=0%  Similarity=-0.047  Sum_probs=19.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +...|+|.|..||||||+++ .+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~-~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVN-ILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHT-TTGG
T ss_pred             CceEEEEECCCCCCHHHHHH-HHHH
Confidence            44569999999999999996 6655

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.52  E-value=0.012  Score=46.45  Aligned_cols=21  Identities=10%  Similarity=0.091  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+|+|||||.+ .+..
T Consensus        27 ~i~l~G~sGsGKSTl~~-~La~   47 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLAC-ALNQ   47 (200)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999995 5554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.51  E-value=0.011  Score=47.07  Aligned_cols=20  Identities=10%  Similarity=0.057  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+++
T Consensus        28 ~~l~G~nGsGKSTll~-~l~g   47 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAH-TLAV   47 (231)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.48  E-value=0.013  Score=46.76  Aligned_cols=21  Identities=5%  Similarity=0.159  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.+ .+..
T Consensus         7 ~i~i~G~~GsGKSTl~~-~L~~   27 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCK-AMAE   27 (227)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.46  E-value=0.017  Score=44.60  Aligned_cols=22  Identities=9%  Similarity=-0.000  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+++|.+||||||+.. .+..
T Consensus         5 ~~I~l~G~~GsGKST~~~-~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQAS-RLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.45  E-value=0.016  Score=48.11  Aligned_cols=20  Identities=10%  Similarity=0.164  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        33 ~~i~G~NGsGKSTLlk-~l~G   52 (263)
T 2pjz_A           33 VIILGPNGSGKTTLLR-AISG   52 (263)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 5555

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.44  E-value=0.014  Score=45.96  Aligned_cols=21  Identities=5%  Similarity=0.015  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+||||||+.+ .+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~-~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQ-MFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHHH-HHHH
Confidence            49999999999999996 5544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.40  E-value=0.0072  Score=46.89  Aligned_cols=21  Identities=5%  Similarity=0.177  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|.+|+|||||++ .+..
T Consensus         4 ~v~IvG~SGsGKSTL~~-~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLIT-RMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            38999999999999996 6655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.37  E-value=0.012  Score=51.05  Aligned_cols=23  Identities=4%  Similarity=0.075  Sum_probs=19.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .-+++|+|.+|+|||||++ .+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk-~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVN-KLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHH-HHHH
T ss_pred             hCeEEEECCCCCCHHHHHH-HHHH
Confidence            4579999999999999996 5555

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.37  E-value=0.017  Score=44.67  Aligned_cols=21  Identities=5%  Similarity=-0.070  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus         5 ~I~i~G~~GsGKsT~~~-~L~~   25 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQ-LAMD   25 (192)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.35  E-value=0.019  Score=45.30  Aligned_cols=21  Identities=5%  Similarity=0.112  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.+ .+.+
T Consensus         4 ~i~l~G~~GsGKST~~~-~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIAN-LFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHT
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.33  E-value=0.014  Score=46.43  Aligned_cols=21  Identities=5%  Similarity=-0.100  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|+|.+||||||+.. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~-~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQ-FIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999996 5544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.33  E-value=0.012  Score=50.07  Aligned_cols=20  Identities=0%  Similarity=0.027  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        83 vaivG~sGsGKSTLl~-ll~g  102 (306)
T 3nh6_A           83 LALVGPSGAGKSTILR-LLFR  102 (306)
T ss_dssp             EEEESSSCHHHHHHHH-HHTT
T ss_pred             EEEECCCCchHHHHHH-HHHc
Confidence            9999999999999996 5554

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.32  E-value=0.015  Score=46.51  Aligned_cols=22  Identities=0%  Similarity=0.078  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|+++|+|||||+|... +++.
T Consensus         1 M~Iil~GpPGsGKgTqa~-~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAK-RLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            358999999999999996 6554

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.31  E-value=0.018  Score=44.58  Aligned_cols=21  Identities=14%  Similarity=0.320  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         7 ~I~l~G~~GsGKST~~~-~L~~   27 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQ-ALAT   27 (193)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.29  E-value=0.014  Score=49.77  Aligned_cols=22  Identities=5%  Similarity=-0.050  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|++|||||||++ .+.+
T Consensus        91 ~ivgI~G~sGsGKSTL~~-~L~g  112 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTAR-VLQA  112 (312)
T ss_dssp             EEEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEEECCCCchHHHHHH-HHHh
Confidence            449999999999999996 5555

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.24  E-value=0.018  Score=48.51  Aligned_cols=20  Identities=15%  Similarity=0.110  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        67 ~~i~G~NGsGKSTLlk-~l~G   86 (290)
T 2bbs_A           67 LAVAGSTGAGKTSLLM-MIMG   86 (290)
T ss_dssp             EEEEESTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            8999999999999996 5655

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.23  E-value=0.023  Score=44.62  Aligned_cols=22  Identities=5%  Similarity=0.022  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+||||||+.. .+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~-~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCE-KLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.20  E-value=0.019  Score=44.36  Aligned_cols=21  Identities=5%  Similarity=-0.032  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+++|.+||||||+.. .+..
T Consensus         7 ~i~l~G~~GsGKst~a~-~La~   27 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGS-QLAK   27 (185)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999996 6644

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.15  E-value=0.021  Score=44.82  Aligned_cols=22  Identities=5%  Similarity=0.019  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|.|.+||||||+.. .+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~-~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQAT-LLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEEEEcCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.14  E-value=0.015  Score=43.91  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+|+. .+.+
T Consensus        39 ~~l~G~~G~GKTtL~~-~i~~   58 (149)
T 2kjq_A           39 IYVWGEEGAGKSHLLQ-AWVA   58 (149)
T ss_dssp             EEEESSSTTTTCHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.11  E-value=0.018  Score=43.61  Aligned_cols=21  Identities=5%  Similarity=-0.121  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+|.|.+||||||+.. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~-~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGS-LLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHH-HHHH
T ss_pred             eEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999995 5544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.09  E-value=0.019  Score=43.90  Aligned_cols=20  Identities=0%  Similarity=0.091  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        46 ~ll~G~~G~GKT~l~~-~~~~   65 (195)
T 1jbk_A           46 PVLIGEPGVGKTAIVE-GLAQ   65 (195)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             eEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6655

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.02  E-value=0.023  Score=44.79  Aligned_cols=22  Identities=14%  Similarity=0.113  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+|+|||||++ .+..
T Consensus        22 ~~i~i~G~~GsGKSTl~~-~L~~   43 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAK-NLQK   43 (207)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHT
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            349999999999999996 6655

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.98  E-value=0.019  Score=49.91  Aligned_cols=20  Identities=5%  Similarity=0.112  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        33 ~~llGpsGsGKSTLLr-~iaG   52 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLR-CLAG   52 (359)
T ss_dssp             EEEEESTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCchHHHHHH-HHhc
Confidence            8999999999999995 5555

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.98  E-value=0.021  Score=46.08  Aligned_cols=22  Identities=5%  Similarity=0.135  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|..|||||||++ .+.+
T Consensus        21 ~~i~i~G~~GsGKSTl~~-~L~~   42 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLN-HFEK   42 (230)
T ss_dssp             EEEEEECSTTSCHHHHHH-TTGG
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh
Confidence            459999999999999996 5655

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.95  E-value=0.018  Score=46.29  Aligned_cols=21  Identities=5%  Similarity=0.091  Sum_probs=18.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      ..|+|+|.+||||||+.. .+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~-~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSS-RIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHH-HHH
T ss_pred             cEEEEECCCCCCHHHHHH-HHH
Confidence            359999999999999996 554

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=93.88  E-value=0.68  Score=39.19  Aligned_cols=63  Identities=11%  Similarity=0.097  Sum_probs=39.2

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                      .||.+|++... +..++..+...++.+.......+.++ -+|.|.++..       .+..+++++++.+++.
T Consensus       186 aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~v~~~a~~~~~~~lg  249 (314)
T 3fwy_A          186 HADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA  249 (314)
T ss_dssp             TCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred             hCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hHHHHHHHHhCCeEEE
Confidence            68888888755 35566677666666654433334444 2567776532       3456778888877653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.86  E-value=0.021  Score=49.55  Aligned_cols=20  Identities=0%  Similarity=-0.039  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        44 ~~llGpnGsGKSTLLr-~iaG   63 (355)
T 1z47_A           44 VGLLGPSGSGKTTILR-LIAG   63 (355)
T ss_dssp             EEEECSTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            8999999999999995 5555

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.86  E-value=0.027  Score=43.57  Aligned_cols=22  Identities=5%  Similarity=0.046  Sum_probs=18.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+||||||+.. .+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~-~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCA-RIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            359999999999999995 5544

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.85  E-value=0.021  Score=45.89  Aligned_cols=21  Identities=0%  Similarity=-0.050  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~-~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGN-LVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            59999999999999996 5544

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.81  E-value=0.021  Score=45.51  Aligned_cols=22  Identities=0%  Similarity=0.015  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.+||||||+.. .+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~-~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAP-NLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            359999999999999996 5544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.81  E-value=0.019  Score=46.72  Aligned_cols=21  Identities=10%  Similarity=0.083  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|+.|+|||||++ .+.+
T Consensus        27 iigI~G~~GsGKSTl~k-~L~~   47 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCE-KIME   47 (245)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.79  E-value=0.03  Score=51.35  Aligned_cols=20  Identities=5%  Similarity=-0.007  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        28 ~gLiGpNGaGKSTLlk-iL~G   47 (538)
T 3ozx_A           28 LGVLGKNGVGKTTVLK-ILAG   47 (538)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            8999999999999996 6665

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.77  E-value=0.024  Score=48.66  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus       174 v~i~G~~GsGKTTll~-~l~g  193 (330)
T 2pt7_A          174 VIVCGGTGSGKTTYIK-SIME  193 (330)
T ss_dssp             EEEEESTTSCHHHHHH-HGGG
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 6665

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.77  E-value=0.022  Score=49.47  Aligned_cols=20  Identities=0%  Similarity=-0.081  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        32 ~~llGpnGsGKSTLLr-~iaG   51 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLL-MLAG   51 (359)
T ss_dssp             EEEECSTTSSHHHHHH-HHHT
T ss_pred             EEEEcCCCchHHHHHH-HHHC
Confidence            8999999999999995 5555

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.76  E-value=0.023  Score=43.71  Aligned_cols=20  Identities=10%  Similarity=0.187  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+|+||||+.. .+..
T Consensus        14 i~i~G~~GsGKst~~~-~l~~   33 (180)
T 3iij_A           14 ILLTGTPGVGKTTLGK-ELAS   33 (180)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.76  E-value=0.023  Score=49.45  Aligned_cols=20  Identities=5%  Similarity=0.079  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        32 ~~llGpnGsGKSTLLr-~iaG   51 (362)
T 2it1_A           32 MALLGPSGSGKSTLLY-TIAG   51 (362)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCchHHHHHH-HHhc
Confidence            8999999999999995 5555

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.76  E-value=0.02  Score=48.60  Aligned_cols=20  Identities=5%  Similarity=-0.012  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCchhhhchhhhc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      .++|+|++||||||++. .+.
T Consensus       104 vi~lvG~nGsGKTTll~-~La  123 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIA-KLG  123 (304)
T ss_dssp             EEEEECSTTSSHHHHHH-HHH
T ss_pred             EEEEECCCCCcHHHHHH-HHH
Confidence            39999999999999996 544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.73  E-value=0.021  Score=46.07  Aligned_cols=22  Identities=5%  Similarity=0.012  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+||||||+.. .+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~-~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAP-KLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6554

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.71  E-value=0.028  Score=45.81  Aligned_cols=24  Identities=4%  Similarity=-0.058  Sum_probs=19.7

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..+.|+|+|.+||||||+.. ++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~-~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSL-NLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHHH
Confidence            34569999999999999996 6654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.68  E-value=0.03  Score=43.93  Aligned_cols=23  Identities=4%  Similarity=0.083  Sum_probs=18.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .+.|+|+|.+||||||+.. .+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~-~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAV-KLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CeEEEEECCCCCCHHHHHH-HHHH
Confidence            3459999999999999996 5554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.68  E-value=0.024  Score=49.64  Aligned_cols=20  Identities=5%  Similarity=0.057  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        32 ~~llGpsGsGKSTLLr-~iaG   51 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLR-MIAG   51 (381)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEEcCCCchHHHHHH-HHHc
Confidence            8999999999999995 5555

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.68  E-value=0.021  Score=49.62  Aligned_cols=21  Identities=10%  Similarity=0.153  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+++
T Consensus       125 ~i~I~GptGSGKTTlL~-~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLA-AMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHh
Confidence            59999999999999997 6655

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.67  E-value=0.024  Score=49.34  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        57 ~~IiGpnGaGKSTLlr-~i~G   76 (366)
T 3tui_C           57 YGVIGASGAGKSTLIR-CVNL   76 (366)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEEcCCCchHHHHHH-HHhc
Confidence            8999999999999995 5554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.67  E-value=0.022  Score=46.51  Aligned_cols=20  Identities=5%  Similarity=0.094  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+|++ .+.+
T Consensus        52 ~ll~G~~G~GKTtl~~-~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLAR-AVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.66  E-value=0.023  Score=49.36  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+.+
T Consensus       177 ~i~ivG~sGsGKSTll~-~l~~  197 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMK-ALMQ  197 (361)
T ss_dssp             CEEEEESSSSCHHHHHH-HHHT
T ss_pred             EEEEECCCCCCHHHHHH-HHHh
Confidence            39999999999999997 6665

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.64  E-value=0.024  Score=49.50  Aligned_cols=20  Identities=5%  Similarity=0.039  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        32 ~~llGpnGsGKSTLLr-~iaG   51 (372)
T 1g29_1           32 MILLGPSGCGKTTTLR-MIAG   51 (372)
T ss_dssp             EEEECSTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCcHHHHHHH-HHHc
Confidence            8999999999999995 5555

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.64  E-value=0.024  Score=43.80  Aligned_cols=21  Identities=0%  Similarity=-0.007  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus         2 ~I~l~G~~GsGKsT~~~-~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAK-KLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 5554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.63  E-value=0.025  Score=49.42  Aligned_cols=20  Identities=0%  Similarity=0.031  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        40 ~~llGpnGsGKSTLLr-~iaG   59 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLR-MIAG   59 (372)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHHc
Confidence            8999999999999995 5554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.61  E-value=0.029  Score=43.87  Aligned_cols=21  Identities=0%  Similarity=-0.010  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus         6 ~I~l~G~~GsGKsT~~~-~L~~   26 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCM-NIME   26 (204)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.56  E-value=0.023  Score=47.39  Aligned_cols=20  Identities=5%  Similarity=0.135  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+|++ .+.+
T Consensus        47 vlL~Gp~GtGKTtLak-ala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAK-AVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999996 6665

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.55  E-value=0.029  Score=43.52  Aligned_cols=21  Identities=0%  Similarity=0.132  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus        12 ~I~l~G~~GsGKSTv~~-~La~   32 (184)
T 1y63_A           12 NILITGTPGTGKTSMAE-MIAA   32 (184)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.54  E-value=0.026  Score=44.88  Aligned_cols=20  Identities=5%  Similarity=0.192  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||+. .++.
T Consensus        26 ~~i~G~~GsGKTtl~~-~l~~   45 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSL-HFIA   45 (235)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            8899999999999996 6664

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.52  E-value=0.024  Score=44.71  Aligned_cols=22  Identities=5%  Similarity=0.126  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+|+|||||++ .+.+
T Consensus        23 ~~i~i~G~~GsGKstl~~-~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLAN-QLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.50  E-value=0.028  Score=43.07  Aligned_cols=20  Identities=5%  Similarity=0.077  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+||||||+.. .+..
T Consensus         7 i~i~G~~GsGKsTla~-~La~   26 (175)
T 1via_A            7 IVFIGFMGSGKSTLAR-ALAK   26 (175)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5544

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.50  E-value=0.012  Score=46.56  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+++ .+..
T Consensus         2 ~I~i~G~~GsGKsTl~~-~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVE-KLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=93.49  E-value=0.059  Score=48.18  Aligned_cols=26  Identities=12%  Similarity=-0.042  Sum_probs=21.5

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..+...|.|+|.+++|||+|+| ++.+
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN-~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMD-FMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHH-HHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHH-HHhh
Confidence            3456679999999999999999 6653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.49  E-value=0.026  Score=47.33  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .-|+|.|.+||||||+.. .+..
T Consensus        34 ~livl~G~sGsGKSTla~-~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRS-AIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.46  E-value=0.028  Score=43.63  Aligned_cols=21  Identities=5%  Similarity=0.047  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus        11 ~I~l~G~~GsGKsT~~~-~La~   31 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCE-KIVQ   31 (196)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.43  E-value=0.025  Score=47.95  Aligned_cols=21  Identities=0%  Similarity=0.004  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++++|.+||||||++. .+.+
T Consensus       102 vi~lvG~nGsGKTTll~-~Lag  122 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLG-KLAH  122 (302)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            39999999999999996 5443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.41  E-value=0.03  Score=43.33  Aligned_cols=20  Identities=10%  Similarity=0.155  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|.+|+|||||+. ++..
T Consensus         7 i~i~G~sGsGKTTl~~-~L~~   26 (169)
T 1xjc_A            7 WQVVGYKHSGKTTLME-KWVA   26 (169)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6665

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.39  E-value=0.029  Score=43.38  Aligned_cols=22  Identities=0%  Similarity=0.099  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+++|.+|+||||+.. .+..
T Consensus        14 ~~i~l~G~~GsGKsT~~~-~L~~   35 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIAT-RLAD   35 (186)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHH
T ss_pred             cEEEEEcCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.36  E-value=0.025  Score=47.88  Aligned_cols=22  Identities=0%  Similarity=-0.032  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+|+|||||++ .+.+
T Consensus        81 ~iigI~G~~GsGKSTl~~-~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTAR-VLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.32  E-value=0.025  Score=49.34  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+.+
T Consensus       138 ~i~ivG~~GsGKTTll~-~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIA-SMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHh
Confidence            49999999999999997 6655

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.32  E-value=0.029  Score=44.79  Aligned_cols=21  Identities=0%  Similarity=-0.056  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         7 ~I~l~G~~GsGKsT~~~-~La~   27 (222)
T 1zak_A            7 KVMISGAPASGKGTQCE-LIKT   27 (222)
T ss_dssp             CEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999996 5544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.32  E-value=0.03  Score=46.03  Aligned_cols=20  Identities=5%  Similarity=0.067  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+|||||||.. .+..
T Consensus         4 i~I~G~~GSGKSTla~-~La~   23 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAI-QIAQ   23 (253)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHHH-HHHh
Confidence            8999999999999996 6654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.32  E-value=0.021  Score=49.40  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        29 ~~llGpnGsGKSTLLr-~iaG   48 (348)
T 3d31_A           29 FVILGPTGAGKTLFLE-LIAG   48 (348)
T ss_dssp             EEEECCCTHHHHHHHH-HHHT
T ss_pred             EEEECCCCccHHHHHH-HHHc
Confidence            8999999999999995 5555

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.30  E-value=0.033  Score=45.67  Aligned_cols=20  Identities=10%  Similarity=0.175  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      .|+|+|.+||||||+++ .+.
T Consensus        29 ~I~I~G~~GsGKSTl~k-~La   48 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCK-ALA   48 (252)
T ss_dssp             EEEEECCTTSSHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHH-HHH
Confidence            49999999999999996 665

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.30  E-value=0.029  Score=44.75  Aligned_cols=22  Identities=5%  Similarity=-0.112  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.+||||||+.. .+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~-~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCE-FIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            359999999999999995 5544

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.25  E-value=0.031  Score=43.44  Aligned_cols=21  Identities=0%  Similarity=0.055  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus        14 ~I~l~G~~GsGKsT~a~-~L~~   34 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCE-KLVE   34 (199)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999995 5544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.23  E-value=0.031  Score=43.95  Aligned_cols=21  Identities=5%  Similarity=0.124  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus        12 ~I~l~G~~GsGKST~~~-~L~~   32 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSK-LLVE   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.23  E-value=0.033  Score=48.95  Aligned_cols=20  Identities=20%  Similarity=0.144  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        50 ~~llGpsGsGKSTLLr-~iaG   69 (390)
T 3gd7_A           50 VGLLGRTGSGKSTLLS-AFLR   69 (390)
T ss_dssp             EEEEESTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHhC
Confidence            9999999999999995 5555

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.20  E-value=0.033  Score=42.28  Aligned_cols=20  Identities=0%  Similarity=0.004  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||+.. .+..
T Consensus         5 I~l~G~~GsGKsT~a~-~La~   24 (173)
T 1e6c_A            5 IFMVGARGCGMTTVGR-ELAR   24 (173)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.17  E-value=0.033  Score=46.90  Aligned_cols=24  Identities=4%  Similarity=0.102  Sum_probs=19.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ....|+|+|.+|||||||++ .+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~-~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSI-QIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHHH
Confidence            34569999999999999996 5544

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.16  E-value=0.039  Score=42.52  Aligned_cols=21  Identities=5%  Similarity=0.023  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         8 ~I~l~G~~GsGKsT~~~-~L~~   28 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCA-NIVR   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999995 5544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.14  E-value=0.039  Score=45.39  Aligned_cols=21  Identities=5%  Similarity=0.135  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         6 lIvl~G~pGSGKSTla~-~La~   26 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSK-NLAK   26 (260)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6554

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.10  E-value=0.033  Score=43.89  Aligned_cols=21  Identities=0%  Similarity=0.102  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus        11 ~I~l~G~~GsGKsT~~~-~L~~   31 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSR-KLVE   31 (215)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.08  E-value=0.025  Score=43.08  Aligned_cols=20  Identities=10%  Similarity=0.110  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        46 vll~G~~G~GKT~la~-~~~~   65 (187)
T 2p65_A           46 PILLGDPGVGKTAIVE-GLAI   65 (187)
T ss_dssp             EEEESCGGGCHHHHHH-HHHH
T ss_pred             eEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999995 6655

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.07  E-value=0.035  Score=42.71  Aligned_cols=18  Identities=0%  Similarity=0.017  Sum_probs=16.2

Q ss_pred             EEEEcCCCCchhhhchhhh
Q psy5810          54 FIVHSDTNHTQRCLTSMPF   72 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~   72 (250)
                      .+|+|+.|+|||||+. .+
T Consensus        29 ~~i~G~NGsGKStll~-ai   46 (182)
T 3kta_A           29 TAIVGANGSGKSNIGD-AI   46 (182)
T ss_dssp             EEEEECTTSSHHHHHH-HH
T ss_pred             EEEECCCCCCHHHHHH-HH
Confidence            7999999999999996 54

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.05  E-value=0.03  Score=47.91  Aligned_cols=20  Identities=10%  Similarity=0.125  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus        54 ~ll~Gp~G~GKTTLa~-~ia~   73 (334)
T 1in4_A           54 VLLAGPPGLGKTTLAH-IIAS   73 (334)
T ss_dssp             EEEESSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999996 6665

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.02  E-value=0.03  Score=46.84  Aligned_cols=20  Identities=10%  Similarity=0.112  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||+. .++.
T Consensus        38 ~~i~G~~G~GKTTl~~-~ia~   57 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVR-QQAL   57 (296)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6655

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.01  E-value=0.03  Score=42.93  Aligned_cols=21  Identities=0%  Similarity=-0.007  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+||||||+.. .+..
T Consensus         7 ~I~l~G~~GsGKST~a~-~La~   27 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAH-TLHE   27 (183)
T ss_dssp             EEEEECCC----CHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.99  E-value=0.032  Score=46.25  Aligned_cols=20  Identities=5%  Similarity=0.094  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||+|++ .+.+
T Consensus        76 vll~Gp~GtGKTtl~~-~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLAR-AVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCcChHHHHHH-HHHH
Confidence            8999999999999996 6665

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.98  E-value=0.041  Score=42.89  Aligned_cols=22  Identities=5%  Similarity=0.131  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|+|.+||||||+.. .+..
T Consensus         9 ~~I~i~G~~GsGKST~~~-~La~   30 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAA-LLRS   30 (203)
T ss_dssp             EEEEEEECTTSCHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=92.98  E-value=0.032  Score=44.48  Aligned_cols=20  Identities=10%  Similarity=0.240  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        55 ~ll~G~~G~GKT~la~-~l~~   74 (242)
T 3bos_A           55 IYLWGPVKSGRTHLIH-AACA   74 (242)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=92.96  E-value=0.041  Score=42.27  Aligned_cols=21  Identities=0%  Similarity=-0.058  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+++|.+|+||||+.+ .+..
T Consensus         7 ~i~l~G~~GsGKST~~~-~L~~   27 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSM-ALEE   27 (179)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999995 5544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.89  E-value=0.04  Score=47.11  Aligned_cols=23  Identities=0%  Similarity=-0.078  Sum_probs=18.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .+-|+|+|.+|||||||++ .+..
T Consensus        92 p~iigI~GpsGSGKSTl~~-~L~~  114 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSR-VLKA  114 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CEEEEEECCCCCCHHHHHH-HHHH
Confidence            3459999999999999995 5544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=92.88  E-value=0.038  Score=43.65  Aligned_cols=20  Identities=10%  Similarity=-0.162  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||+|+. .++.
T Consensus        23 ~~i~G~~GsGKTtl~~-~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLAL-QTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.86  E-value=0.039  Score=42.51  Aligned_cols=20  Identities=0%  Similarity=0.006  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+||||||+.. .+..
T Consensus         5 I~l~G~~GsGKsT~a~-~La~   24 (184)
T 2iyv_A            5 AVLVGLPGSGKSTIGR-RLAK   24 (184)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.85  E-value=0.033  Score=49.43  Aligned_cols=21  Identities=10%  Similarity=-0.009  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|++|+|||||++ .+++
T Consensus       169 ii~I~GpnGSGKTTlL~-allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLY-AGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHH-HHHH
T ss_pred             eEEEECCCCCCHHHHHH-HHHh
Confidence            38999999999999997 6665

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=92.83  E-value=0.021  Score=49.53  Aligned_cols=20  Identities=5%  Similarity=0.081  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        34 ~~llGpnGsGKSTLLr-~iaG   53 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMR-IIAG   53 (353)
T ss_dssp             EEEECSCHHHHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            8999999999999995 5555

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.81  E-value=0.039  Score=50.26  Aligned_cols=20  Identities=15%  Similarity=0.089  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+++
T Consensus       263 i~I~GptGSGKTTlL~-aL~~  282 (511)
T 2oap_1          263 AIVVGETASGKTTTLN-AIMM  282 (511)
T ss_dssp             EEEEESTTSSHHHHHH-HHGG
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            9999999999999997 6665

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.74  E-value=0.051  Score=43.14  Aligned_cols=21  Identities=5%  Similarity=0.186  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      +.|+|.|.+||||||+.+ .+.
T Consensus         5 ~~I~i~G~~GSGKST~~~-~L~   25 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVAN-AFA   25 (218)
T ss_dssp             EEEEEECCTTSCHHHHHH-HHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHH
Confidence            459999999999999996 554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.72  E-value=0.041  Score=44.14  Aligned_cols=20  Identities=0%  Similarity=-0.014  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||+|+. .++.
T Consensus        27 ~~i~G~~GsGKTtl~~-~l~~   46 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICH-TLAV   46 (243)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999996 6665

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.71  E-value=0.058  Score=42.45  Aligned_cols=26  Identities=12%  Similarity=0.129  Sum_probs=20.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..++..|+|.|..||||||+.+ .|..
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~-~L~~   34 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCE-ILKN   34 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHH-HHHH
T ss_pred             cccceEEEEECCCCCCHHHHHH-HHHH
Confidence            4566779999999999999995 5544

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.67  E-value=0.033  Score=47.39  Aligned_cols=20  Identities=5%  Similarity=-0.034  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|..|+|||||++ .+.+
T Consensus         7 ~~i~G~~GaGKTTll~-~l~~   26 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLR-HILN   26 (318)
T ss_dssp             EEEEESSSSSCHHHHH-HHHH
T ss_pred             EEEEecCCCCHHHHHH-HHHh
Confidence            8899999999999997 6664

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.59  E-value=0.038  Score=47.96  Aligned_cols=21  Identities=0%  Similarity=0.004  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++++|.+||||||++. .+.+
T Consensus       159 vi~lvG~nGsGKTTll~-~Lag  179 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLG-KLAH  179 (359)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEEcCCCChHHHHHH-HHHh
Confidence            39999999999999996 5443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.58  E-value=0.048  Score=44.11  Aligned_cols=22  Identities=5%  Similarity=0.131  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|.|.+||||||++. .+..
T Consensus        27 ~~i~i~G~~GsGKsT~~~-~l~~   48 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVIN-EVYH   48 (229)
T ss_dssp             EEEEEECCTTSCHHHHHH-HHHH
T ss_pred             eEEEEEcCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.56  E-value=0.083  Score=46.94  Aligned_cols=20  Identities=5%  Similarity=0.129  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||+|+. .+.+
T Consensus       209 iLL~GPPGtGKT~lak-AiA~  228 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVK-AVAN  228 (428)
T ss_dssp             EEEESCTTTTHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6665

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.097  Score=46.10  Aligned_cols=20  Identities=10%  Similarity=0.125  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||.|.. .+.+
T Consensus       185 vLL~GPPGTGKTllAk-AiA~  204 (405)
T 4b4t_J          185 VILYGPPGTGKTLLAR-AVAH  204 (405)
T ss_dssp             EEEESCSSSSHHHHHH-HHHH
T ss_pred             eEEeCCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6766

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=92.50  E-value=0.041  Score=44.91  Aligned_cols=20  Identities=5%  Similarity=0.135  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+|+. .+.+
T Consensus        48 vll~G~~GtGKT~la~-~la~   67 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAK-AIAG   67 (257)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECcCCCCHHHHHH-HHHH
Confidence            9999999999999995 6655

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.48  E-value=0.041  Score=43.52  Aligned_cols=20  Identities=0%  Similarity=0.172  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        48 ~ll~G~~G~GKT~l~~-~~~~   67 (250)
T 1njg_A           48 YLFSGTRGVGKTSIAR-LLAK   67 (250)
T ss_dssp             EEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.47  E-value=0.042  Score=43.01  Aligned_cols=21  Identities=10%  Similarity=0.116  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -+++.|++|+|||+|+. .+..
T Consensus        56 ~~~l~G~~GtGKT~la~-~i~~   76 (202)
T 2w58_A           56 GLYLHGSFGVGKTYLLA-AIAN   76 (202)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             eEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999995 6655

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=92.46  E-value=0.06  Score=43.33  Aligned_cols=20  Identities=5%  Similarity=0.051  Sum_probs=16.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|+|||||+|... ++..
T Consensus        32 I~llGpPGsGKgTqa~-~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCE-KLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            6789999999999986 5554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.40  E-value=0.15  Score=45.42  Aligned_cols=20  Identities=5%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||+|+. .+.+
T Consensus       218 vLL~GPPGtGKTllAk-AiA~  237 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAK-AVAA  237 (437)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999996 6666

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.36  E-value=0.041  Score=49.45  Aligned_cols=20  Identities=15%  Similarity=0.469  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+++
T Consensus       141 v~IvGpnGsGKSTLlr-~L~G  160 (460)
T 2npi_A          141 VVIVGGSQTGKTSLSR-TLCS  160 (460)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999995 6655

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=92.33  E-value=0.056  Score=44.11  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=19.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.+.|+|.|.+||||||+.. .+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~-~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCA-KIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CcEEEEEECCCCCCHHHHHH-HHHH
Confidence            33569999999999999995 5544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=92.32  E-value=0.043  Score=44.95  Aligned_cols=22  Identities=0%  Similarity=0.021  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+++|.+||||||+.. .+..
T Consensus        33 ~~i~l~G~~GsGKSTla~-~L~~   54 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHR-IKQK   54 (253)
T ss_dssp             EEEEEESCGGGTTHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999995 5544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.30  E-value=0.043  Score=49.64  Aligned_cols=20  Identities=0%  Similarity=0.003  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCchhhhchhhhc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      .++|+|.+|||||||+. .+.
T Consensus       295 VI~LVGpNGSGKTTLl~-~LA  314 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIG-KLA  314 (503)
T ss_dssp             EEEEECCTTSSHHHHHH-HHH
T ss_pred             EEEEECCCcccHHHHHH-HHH
Confidence            39999999999999996 543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.30  E-value=0.045  Score=43.36  Aligned_cols=22  Identities=5%  Similarity=-0.008  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+++|.+|+||||+.. .+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~-~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAV-ELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            349999999999999995 5544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.27  E-value=0.054  Score=50.03  Aligned_cols=20  Identities=5%  Similarity=0.072  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus       372 ~~ivG~sGsGKSTLl~-~l~g  391 (582)
T 3b60_A          372 VALVGRSGSGKSTIAS-LITR  391 (582)
T ss_dssp             EEEEECTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhh
Confidence            9999999999999996 5555

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=92.22  E-value=0.049  Score=47.05  Aligned_cols=21  Identities=10%  Similarity=0.180  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++|+|++|+|||||++ .+.+
T Consensus        73 ~~gIiG~nGaGKTTLl~-~I~g   93 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLG-MICN   93 (347)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHhc
Confidence            39999999999999996 6665

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.16  E-value=0.056  Score=40.97  Aligned_cols=20  Identities=5%  Similarity=0.047  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||+.. .+..
T Consensus        10 i~l~G~~GsGKSTva~-~La~   29 (168)
T 1zuh_A           10 LVLIGFMGSGKSSLAQ-ELGL   29 (168)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5544

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.13  E-value=0.066  Score=49.42  Aligned_cols=20  Identities=5%  Similarity=-0.086  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus       370 ~~ivG~sGsGKSTll~-~l~g  389 (578)
T 4a82_A          370 VAFVGMSGGGKSTLIN-LIPR  389 (578)
T ss_dssp             EEEECSTTSSHHHHHT-TTTT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            9999999999999996 5554

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.08  E-value=0.049  Score=44.82  Aligned_cols=20  Identities=0%  Similarity=-0.039  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|.+|+||||+.+ .+..
T Consensus        51 i~l~G~~GsGKSTl~~-~La~   70 (250)
T 3nwj_A           51 MYLVGMMGSGKTTVGK-IMAR   70 (250)
T ss_dssp             EEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5544

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.01  E-value=0.12  Score=45.78  Aligned_cols=20  Identities=10%  Similarity=0.155  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||+|+. .+.+
T Consensus       219 vLLyGPPGTGKTlLAk-AiA~  238 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAK-AVAN  238 (437)
T ss_dssp             EEEESSTTTTHHHHHH-HHHH
T ss_pred             CceECCCCchHHHHHH-HHHH
Confidence            9999999999999996 6766

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=92.00  E-value=0.1  Score=45.45  Aligned_cols=20  Identities=5%  Similarity=0.233  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+|||+|+. .+..
T Consensus       151 vLL~GppGtGKT~la~-aia~  170 (389)
T 3vfd_A          151 LLLFGPPGNGKTMLAK-AVAA  170 (389)
T ss_dssp             EEEESSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 6655

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.88  E-value=0.065  Score=49.71  Aligned_cols=20  Identities=5%  Similarity=0.061  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus       384 ~~ivG~sGsGKSTll~-~l~g  403 (598)
T 3qf4_B          384 VALVGPTGSGKTTIVN-LLMR  403 (598)
T ss_dssp             EEEECCTTSSTTHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            9999999999999996 5555

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.87  E-value=0.061  Score=49.65  Aligned_cols=20  Identities=5%  Similarity=0.150  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus       372 ~~ivG~sGsGKSTll~-~l~g  391 (582)
T 3b5x_A          372 VALVGRSGSGKSTIAN-LFTR  391 (582)
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            9999999999999996 5555

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.80  E-value=0.066  Score=49.06  Aligned_cols=20  Identities=0%  Similarity=-0.066  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus        50 ~~LvG~NGaGKSTLlk-~l~G   69 (538)
T 1yqt_A           50 VGIVGPNGTGKSTAVK-ILAG   69 (538)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6655

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.71  E-value=0.063  Score=44.80  Aligned_cols=21  Identities=5%  Similarity=0.097  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+||||||+.. .+..
T Consensus         4 ~I~l~G~~GsGKST~a~-~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAR-EFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=91.67  E-value=0.061  Score=47.99  Aligned_cols=21  Identities=5%  Similarity=-0.005  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++|+|++|+|||||++ .+.+
T Consensus       159 ~~~IvG~sGsGKSTLl~-~Iag  179 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLG-MMAR  179 (438)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHhc
Confidence            39999999999999996 6655

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=91.60  E-value=0.058  Score=44.59  Aligned_cols=20  Identities=5%  Similarity=0.154  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        54 ~ll~G~~GtGKT~la~-~la~   73 (285)
T 3h4m_A           54 ILLYGPPGTGKTLLAK-AVAT   73 (285)
T ss_dssp             EEEESSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999995 6655

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.60  E-value=0.066  Score=42.95  Aligned_cols=20  Identities=5%  Similarity=0.168  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||+|+. +++.
T Consensus        26 ~~i~G~~GsGKTtl~~-~~~~   45 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQ-QFLW   45 (247)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999975 5544

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=91.59  E-value=0.068  Score=39.63  Aligned_cols=20  Identities=5%  Similarity=0.149  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||++.. .+..
T Consensus        30 vll~G~~GtGKt~lA~-~i~~   49 (143)
T 3co5_A           30 VFLTGEAGSPFETVAR-YFHK   49 (143)
T ss_dssp             EEEEEETTCCHHHHHG-GGCC
T ss_pred             EEEECCCCccHHHHHH-HHHH
Confidence            9999999999999994 4544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.58  E-value=0.072  Score=40.01  Aligned_cols=19  Identities=5%  Similarity=0.106  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      .+|+|+.|+|||+|+. .+.
T Consensus        26 ~~I~G~NGsGKStil~-Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLD-AIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHH-HHH
Confidence            7899999999999997 543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.51  E-value=0.066  Score=44.36  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||+. .++.
T Consensus        33 ~~i~G~~GsGKTtl~~-~l~~   52 (279)
T 1nlf_A           33 GALVSPGGAGKSMLAL-QLAA   52 (279)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6664

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=91.50  E-value=0.063  Score=43.62  Aligned_cols=20  Identities=5%  Similarity=0.087  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        42 vll~G~~GtGKT~la~-~la~   61 (262)
T 2qz4_A           42 ALLLGPPGCGKTLLAK-AVAT   61 (262)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999995 6655

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.50  E-value=0.074  Score=49.22  Aligned_cols=20  Identities=15%  Similarity=0.102  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus       372 ~~ivG~sGsGKSTll~-~l~g  391 (587)
T 3qf4_A          372 VAVLGETGSGKSTLMN-LIPR  391 (587)
T ss_dssp             EEEECSSSSSHHHHHH-TTTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            9999999999999996 5554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.47  E-value=0.06  Score=44.81  Aligned_cols=20  Identities=5%  Similarity=0.225  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        57 vll~Gp~GtGKT~la~-~la~   76 (297)
T 3b9p_A           57 LLLFGPPGNGKTLLAR-AVAT   76 (297)
T ss_dssp             EEEESSSSSCHHHHHH-HHHH
T ss_pred             EEEECcCCCCHHHHHH-HHHH
Confidence            9999999999999995 6655

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.46  E-value=0.084  Score=44.00  Aligned_cols=22  Identities=0%  Similarity=-0.064  Sum_probs=18.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      .+.|+|.|.+||||||+.. .+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~-~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQ-RLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHH-HHH
T ss_pred             CEEEEEECCCCCCHHHHHH-HHH
Confidence            4569999999999999996 554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.46  E-value=0.061  Score=46.06  Aligned_cols=20  Identities=10%  Similarity=0.027  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        48 vli~G~~G~GKTtl~~-~l~~   67 (386)
T 2qby_A           48 IFIYGLTGTGKTAVVK-FVLS   67 (386)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6665

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=91.41  E-value=0.077  Score=39.38  Aligned_cols=20  Identities=0%  Similarity=-0.160  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||++.. .+..
T Consensus        27 vll~G~~GtGKt~lA~-~i~~   46 (145)
T 3n70_A           27 VWLYGAPGTGRMTGAR-YLHQ   46 (145)
T ss_dssp             EEEESSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.28  E-value=0.08  Score=42.09  Aligned_cols=27  Identities=7%  Similarity=-0.101  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.+.+....|.++..+.+..+.....
T Consensus       146 iP~~~lpv~pgrn~a~iiE~aa~n~~l  172 (205)
T 2qmh_A          146 VPKITVPFKVGRNLAIIIEVAAMNFRA  172 (205)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            457778888888988888888866553

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.28  E-value=0.066  Score=48.34  Aligned_cols=20  Identities=5%  Similarity=0.089  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        32 ~~liG~nGsGKSTLl~-~l~G   51 (483)
T 3euj_A           32 TTLSGGNGAGKSTTMA-GFVT   51 (483)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            8999999999999996 5544

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.25  E-value=0.075  Score=43.17  Aligned_cols=26  Identities=12%  Similarity=0.092  Sum_probs=19.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..+++++.|+|.+||||||+.. ++..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~-~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQAN-FIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHH-HHHH
T ss_pred             cccccceeeECCCCCCHHHHHH-HHHH
Confidence            3567889999999999999995 5544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.23  E-value=0.066  Score=45.29  Aligned_cols=20  Identities=5%  Similarity=0.046  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+.+
T Consensus        40 lll~G~~GtGKT~la~-~i~~   59 (324)
T 1l8q_A           40 IFIYGSVGTGKTHLLQ-AAGN   59 (324)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999995 6655

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.17  E-value=0.076  Score=49.36  Aligned_cols=20  Identities=0%  Similarity=-0.097  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       106 ~~LvGpNGaGKSTLLk-iL~G  125 (608)
T 3j16_B          106 LGLVGTNGIGKSTALK-ILAG  125 (608)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            9999999999999996 6655

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=91.17  E-value=0.077  Score=46.07  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      .+|+|+.|+|||||++ .++
T Consensus        26 ~~i~G~NGaGKTTll~-ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFE-AIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHH-HHH
Confidence            6699999999999997 544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.11  E-value=0.15  Score=45.08  Aligned_cols=21  Identities=0%  Similarity=-0.074  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+|+|.+||||||+.. ++..
T Consensus       260 lIil~G~pGSGKSTla~-~L~~  280 (416)
T 3zvl_A          260 VVVAVGFPGAGKSTFIQ-EHLV  280 (416)
T ss_dssp             EEEEESCTTSSHHHHHH-HHTG
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999996 6655

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.06  E-value=0.08  Score=43.07  Aligned_cols=22  Identities=5%  Similarity=0.146  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|+|.|.+|+||||+.+ .+..
T Consensus        10 ~~i~i~G~~GsGKsTla~-~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSR-GLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5553

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=91.03  E-value=0.072  Score=46.57  Aligned_cols=20  Identities=5%  Similarity=0.245  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||+. .+.+
T Consensus       172 i~l~G~~GsGKSTl~~-~l~~  191 (377)
T 1svm_A          172 WLFKGPIDSGKTTLAA-ALLE  191 (377)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            8999999999999996 6654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.02  E-value=0.091  Score=48.86  Aligned_cols=20  Identities=0%  Similarity=-0.066  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       120 ~~LiG~NGsGKSTLlk-iL~G  139 (607)
T 3bk7_A          120 VGIVGPNGTGKTTAVK-ILAG  139 (607)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCChHHHHHH-HHhC
Confidence            8999999999999996 6655

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.97  E-value=0.074  Score=45.37  Aligned_cols=20  Identities=0%  Similarity=0.072  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+||||++. .+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~-~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCM-ALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHH-THHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6655

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.83  E-value=0.078  Score=44.30  Aligned_cols=20  Identities=0%  Similarity=0.074  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        70 vll~G~~GtGKT~la~-~la~   89 (309)
T 3syl_A           70 MSFTGNPGTGKTTVAL-KMAG   89 (309)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=90.79  E-value=0.077  Score=44.70  Aligned_cols=62  Identities=8%  Similarity=-0.029  Sum_probs=35.0

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                      ..+.+++|.|.+..  .+.+..+...+.    .-+. .-+|.||.|....    ...+...+...+.|+..++
T Consensus       212 ~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~~-~giVltk~D~~~~----~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          212 SSIQSFLVLSATAK--YEDMKHIVKRFS----SVPV-NQYIFTKIDETTS----LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             TTEEEEEEEETTBC--HHHHHHHTTTTS----SSCC-CEEEEECTTTCSC----CHHHHHHHHTCSCCCSEEC
T ss_pred             CCCeEEEEEECCCC--HHHHHHHHHHHh----cCCC-CEEEEeCCCcccc----hhHHHHHHHHHCcCEEEEE
Confidence            36788889987643  234444433331    1122 3455699996532    2255667777888855543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=90.76  E-value=0.079  Score=44.40  Aligned_cols=20  Identities=0%  Similarity=-0.059  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|.. .+..
T Consensus        39 lLl~GppGtGKT~la~-aiA~   58 (293)
T 3t15_A           39 LGIWGGKGQGKSFQCE-LVFR   58 (293)
T ss_dssp             EEEEECTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7788999999999995 6655

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=90.74  E-value=0.078  Score=44.53  Aligned_cols=20  Identities=5%  Similarity=0.099  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|+. .+.+
T Consensus        52 vLL~Gp~GtGKT~la~-ala~   71 (301)
T 3cf0_A           52 VLFYGPPGCGKTLLAK-AIAN   71 (301)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHHH-HHHH
Confidence            9999999999999995 6655

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=90.73  E-value=0.081  Score=45.50  Aligned_cols=20  Identities=0%  Similarity=-0.076  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        47 ~li~G~~G~GKTtl~~-~l~~   66 (389)
T 1fnn_A           47 ATLLGRPGTGKTVTLR-KLWE   66 (389)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=90.67  E-value=0.083  Score=44.60  Aligned_cols=20  Identities=10%  Similarity=0.081  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        34 v~i~G~~G~GKT~Ll~-~~~~   53 (350)
T 2qen_A           34 TLLLGIRRVGKSSLLR-AFLN   53 (350)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCcCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=90.55  E-value=0.096  Score=43.53  Aligned_cols=20  Identities=5%  Similarity=0.101  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        53 vll~G~~GtGKT~la~-~la~   72 (310)
T 1ofh_A           53 ILMIGPTGVGKTEIAR-RLAK   72 (310)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 6654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.49  E-value=0.085  Score=44.62  Aligned_cols=21  Identities=5%  Similarity=-0.094  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -++|.|++|+|||+|+. .+..
T Consensus        32 ~v~i~G~~G~GKT~L~~-~~~~   52 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIK-IGIN   52 (357)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             cEEEECCCCCCHHHHHH-HHHH
Confidence            38999999999999996 6655

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.39  E-value=0.11  Score=52.57  Aligned_cols=21  Identities=0%  Similarity=-0.026  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ||+|+|++|+|||||++ .+..
T Consensus      1107 ~vaIVG~SGsGKSTL~~-lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVA-LLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHH-HHTT
T ss_pred             EEEEECCCCChHHHHHH-HHhc
Confidence            39999999999999996 5544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.36  E-value=0.1  Score=47.71  Aligned_cols=20  Identities=0%  Similarity=-0.031  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       297 ~~i~G~nGsGKSTLl~-~l~G  316 (538)
T 3ozx_A          297 IGILGPNGIGKTTFAR-ILVG  316 (538)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6655

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.30  E-value=0.095  Score=40.90  Aligned_cols=21  Identities=0%  Similarity=0.129  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|.|.+|+||||+.. .+..
T Consensus         4 ~i~i~G~~GsGKst~~~-~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVAR-RVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            38999999999999995 5544

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=90.26  E-value=0.12  Score=43.83  Aligned_cols=20  Identities=10%  Similarity=0.120  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||+|.. .+..
T Consensus        13 i~i~GptgsGKt~la~-~La~   32 (316)
T 3foz_A           13 IFLMGPTASGKTALAI-ELRK   32 (316)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCccCHHHHHH-HHHH
Confidence            8899999999999996 6654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.23  E-value=0.12  Score=41.71  Aligned_cols=22  Identities=0%  Similarity=-0.008  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|+|.|..||||||+++ .+..
T Consensus         3 ~~i~~~G~~g~GKtt~~~-~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVK-LLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHH-HHHH
T ss_pred             eEEEEEcCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=90.20  E-value=0.11  Score=42.80  Aligned_cols=21  Identities=5%  Similarity=0.170  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -+++.|++|+|||+|+. .+..
T Consensus        66 ~vLl~G~~GtGKT~la~-~ia~   86 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAA-KIAE   86 (272)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCcHHHHHH-HHHH
Confidence            49999999999999995 6655

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=90.11  E-value=0.1  Score=44.28  Aligned_cols=63  Identities=13%  Similarity=0.081  Sum_probs=35.6

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                      .++.+++|.|.+...  +.+.. ...+.+.   .++ .-+|.||.|....    --.+...+...+.|+..++.
T Consensus       222 ~p~~vllVlda~t~~--~~l~~-a~~~~~~---~~i-~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          222 APHETLLVIDATTGQ--NGLVQ-AKIFKEA---VNV-TGIILTKLDGTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             CCSEEEEEEEGGGHH--HHHHH-HHHHHHH---SCC-CEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             CCcEEEEEEECCCCH--HHHHH-HHHHHhc---CCC-CEEEEeCCCCccc----hHHHHHHHHHHCCCEEEEeC
Confidence            478889999886432  22221 2223221   233 3445699996432    12366777888988766643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.02  E-value=0.11  Score=44.85  Aligned_cols=20  Identities=10%  Similarity=0.057  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|+|++|+|||||+. .++.
T Consensus       134 ~~I~G~~GsGKTTL~~-~l~~  153 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAH-TLAV  153 (349)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=89.99  E-value=0.12  Score=44.52  Aligned_cols=21  Identities=10%  Similarity=0.238  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+|+|++|||||+|.. .+..
T Consensus        42 lIvI~GPTgsGKTtLa~-~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSI-DLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHT
T ss_pred             eEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999996 6665

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=89.98  E-value=0.078  Score=42.40  Aligned_cols=20  Identities=10%  Similarity=0.218  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .++.
T Consensus        61 ili~GPPGtGKTt~a~-ala~   80 (212)
T 1tue_A           61 LVFCGPANTGKSYFGM-SFIH   80 (212)
T ss_dssp             EEEESCGGGCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999998885 5554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.96  E-value=0.12  Score=47.21  Aligned_cols=20  Identities=0%  Similarity=-0.026  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       315 ~~i~G~NGsGKSTLlk-~l~G  334 (538)
T 1yqt_A          315 IGIVGPNGIGKTTFVK-MLAG  334 (538)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhC
Confidence            8999999999999996 6665

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.92  E-value=0.1  Score=44.53  Aligned_cols=20  Identities=0%  Similarity=0.046  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        49 ~ll~Gp~G~GKTtla~-~la~   68 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIV-ALAR   68 (340)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.89  E-value=0.2  Score=44.94  Aligned_cols=20  Identities=0%  Similarity=0.047  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||+|.. .+.+
T Consensus       246 ILLyGPPGTGKTlLAk-AiA~  265 (467)
T 4b4t_H          246 ILLYGPPGTGKTLCAR-AVAN  265 (467)
T ss_dssp             EEECSCTTSSHHHHHH-HHHH
T ss_pred             eEeeCCCCCcHHHHHH-HHHh
Confidence            9999999999999995 6665

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.85  E-value=0.12  Score=48.11  Aligned_cols=20  Identities=0%  Similarity=-0.026  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       385 ~~i~G~NGsGKSTLlk-~l~G  404 (607)
T 3bk7_A          385 IGIVGPNGIGKTTFVK-MLAG  404 (607)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8999999999999996 6665

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=89.84  E-value=0.093  Score=44.96  Aligned_cols=20  Identities=5%  Similarity=-0.029  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        47 vll~G~~G~GKT~l~~-~~~~   66 (387)
T 2v1u_A           47 ALLYGLTGTGKTAVAR-LVLR   66 (387)
T ss_dssp             EEECBCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=89.83  E-value=0.12  Score=44.15  Aligned_cols=21  Identities=10%  Similarity=0.078  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|++|||||||.. .+..
T Consensus         7 ~i~i~GptGsGKTtla~-~La~   27 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAM-ALAD   27 (323)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 5554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=89.79  E-value=0.11  Score=43.42  Aligned_cols=20  Identities=15%  Similarity=0.238  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+++. .+..
T Consensus        50 ~ll~G~~GtGKt~la~-~la~   69 (311)
T 4fcw_A           50 FLFLGPTGVGKTELAK-TLAA   69 (311)
T ss_dssp             EEEESCSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHHH-HHHH
Confidence            9999999999999995 5554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.77  E-value=0.12  Score=44.48  Aligned_cols=21  Identities=10%  Similarity=0.161  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+|+|++|||||||.. .+..
T Consensus         9 lI~I~GptgSGKTtla~-~La~   29 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSI-EVAK   29 (340)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             eEEEECCCcCcHHHHHH-HHHH
Confidence            49999999999999996 6554

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.59  E-value=0.13  Score=43.83  Aligned_cols=20  Identities=5%  Similarity=-0.046  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||+|.. .+..
T Consensus         6 i~i~GptgsGKt~la~-~La~   25 (322)
T 3exa_A            6 VAIVGPTAVGKTKTSV-MLAK   25 (322)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCcCCHHHHHH-HHHH
Confidence            8899999999999996 6654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=89.56  E-value=0.13  Score=41.46  Aligned_cols=21  Identities=0%  Similarity=0.055  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|+|.+|+||||+.. .+..
T Consensus        18 ~i~i~G~~gsGKst~~~-~l~~   38 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAK-IIAK   38 (236)
T ss_dssp             EEEEECSSCSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999995 5553

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=89.55  E-value=0.12  Score=48.54  Aligned_cols=16  Identities=13%  Similarity=0.131  Sum_probs=15.3

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      ++|+|++|+|||||++
T Consensus       351 vaIiGpnGsGKSTLl~  366 (670)
T 3ux8_A          351 VAVTGVSGSGKSTLVN  366 (670)
T ss_dssp             EEEECSTTSSHHHHHT
T ss_pred             EEEEeeCCCCHHHHHH
Confidence            8999999999999996

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.55  E-value=0.11  Score=44.00  Aligned_cols=20  Identities=0%  Similarity=0.009  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        61 ~ll~G~~G~GKT~la~-~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTIL-ALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=89.48  E-value=0.11  Score=44.08  Aligned_cols=20  Identities=5%  Similarity=0.205  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|+. .+..
T Consensus        48 iLL~GppGtGKT~la~-ala~   67 (322)
T 1xwi_A           48 ILLFGPPGTGKSYLAK-AVAT   67 (322)
T ss_dssp             EEEESSSSSCHHHHHH-HHHH
T ss_pred             EEEECCCCccHHHHHH-HHHH
Confidence            9999999999999995 6665

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=89.42  E-value=0.46  Score=41.81  Aligned_cols=20  Identities=10%  Similarity=0.197  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|||||+|.. .+..
T Consensus         5 i~i~GptgsGKttla~-~La~   24 (409)
T 3eph_A            5 IVIAGTTGVGKSQLSI-QLAQ   24 (409)
T ss_dssp             EEEEECSSSSHHHHHH-HHHH
T ss_pred             EEEECcchhhHHHHHH-HHHH
Confidence            8899999999999996 6654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=89.26  E-value=0.14  Score=47.64  Aligned_cols=20  Identities=5%  Similarity=0.217  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+.+
T Consensus       381 v~iiG~NGsGKSTLlk-~l~G  400 (608)
T 3j16_B          381 LVMMGENGTGKTTLIK-LLAG  400 (608)
T ss_dssp             EEEESCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            7999999999999996 6655

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.18  E-value=0.14  Score=43.93  Aligned_cols=20  Identities=0%  Similarity=0.170  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        73 vLl~GppGtGKT~la~-~la~   92 (368)
T 3uk6_A           73 VLIAGQPGTGKTAIAM-GMAQ   92 (368)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 6654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.04  E-value=0.13  Score=44.19  Aligned_cols=20  Identities=5%  Similarity=-0.036  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+..
T Consensus        48 vll~G~~G~GKT~la~-~l~~   67 (384)
T 2qby_B           48 NLFLGLTGTGKTFVSK-YIFN   67 (384)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=89.00  E-value=0.13  Score=43.58  Aligned_cols=20  Identities=5%  Similarity=0.170  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|+. .+..
T Consensus        54 vLl~GppGtGKT~la~-aia~   73 (322)
T 3eie_A           54 ILLYGPPGTGKSYLAK-AVAT   73 (322)
T ss_dssp             EEEECSSSSCHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999995 6655

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=88.96  E-value=0.13  Score=43.51  Aligned_cols=20  Identities=5%  Similarity=0.074  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+|||+|+. .+..
T Consensus        58 vll~G~~GtGKT~la~-~ia~   77 (338)
T 3pfi_A           58 ILFSGPAGLGKTTLAN-IISY   77 (338)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECcCCCCHHHHHH-HHHH
Confidence            9999999999999995 6654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=88.95  E-value=0.19  Score=40.18  Aligned_cols=22  Identities=5%  Similarity=0.098  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..|++.|.+|+||||++. .+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~-~l~~   28 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRD-YLAE   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH
T ss_pred             eEEEEEcCCCCCHHHHHH-HHHH
Confidence            459999999999999996 5543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=88.93  E-value=0.14  Score=44.98  Aligned_cols=42  Identities=10%  Similarity=-0.036  Sum_probs=25.2

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNH   97 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g   97 (250)
                      ++|+|++|+|||||+. .++-. .......+..-+...++|+-+
T Consensus       181 ~~I~G~sGsGKTTLl~-~la~~-~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          181 TELFGEFRTGKSQLCH-TLAVT-CQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             EEEEESTTSSHHHHHH-HHHHH-TTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEcCCCCChHHHHH-HHHHH-hccCcccCCCCCcEEEEeCCC
Confidence            8999999999999996 55421 112222222223444567654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=88.93  E-value=0.063  Score=43.97  Aligned_cols=20  Identities=5%  Similarity=0.124  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+|+. .+..
T Consensus        47 vll~G~~GtGKT~la~-~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAK-AVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999995 6655

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=88.91  E-value=0.14  Score=43.36  Aligned_cols=21  Identities=10%  Similarity=0.067  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -+++.|++|+|||.|+. .+..
T Consensus       154 ~lll~G~~GtGKT~La~-aia~  174 (308)
T 2qgz_A          154 GLYLYGDMGIGKSYLLA-AMAH  174 (308)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             eEEEECCCCCCHHHHHH-HHHH
Confidence            49999999999999996 6554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=88.90  E-value=0.16  Score=40.10  Aligned_cols=16  Identities=6%  Similarity=0.129  Sum_probs=15.1

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      .+|+|+.|+|||||+.
T Consensus        26 ~~I~G~NgsGKStil~   41 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLD   41 (203)
T ss_dssp             EEEECCTTSSHHHHHH
T ss_pred             EEEEcCCCCCHHHHHH
Confidence            7899999999999996

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=88.82  E-value=0.21  Score=40.45  Aligned_cols=26  Identities=12%  Similarity=0.117  Sum_probs=18.4

Q ss_pred             cccEEEEEEE--cCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVH--SDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~ii--G~~~vGKSsLi~~~~~~   74 (250)
                      +|-.=||+|+  |.++.|||+|++ ++.+
T Consensus        24 ~~P~nkilvl~~~~~~~~~~~~~~-~lf~   51 (233)
T 3uc9_A           24 QYPQNKILVLSDHPHNFLKTQFLQ-DLFH   51 (233)
T ss_dssp             CCCCCEEEEEEEGGGHHHHHHHHH-HHHC
T ss_pred             ecCCCceEEEecCcccccHHHHHH-HHhc
Confidence            4433345555  999999999997 5555

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=88.75  E-value=0.16  Score=39.54  Aligned_cols=16  Identities=0%  Similarity=-0.108  Sum_probs=14.7

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      +++.|++|+||||++.
T Consensus         6 ~vi~G~~gsGKTT~ll   21 (184)
T 2orw_A            6 TVITGPMYSGKTTELL   21 (184)
T ss_dssp             EEEEESTTSSHHHHHH
T ss_pred             EEEECCCCCCHHHHHH
Confidence            7899999999999985

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=88.64  E-value=0.17  Score=41.39  Aligned_cols=20  Identities=5%  Similarity=0.162  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+|||+|+. .+..
T Consensus        32 vll~G~~GtGKt~la~-~i~~   51 (265)
T 2bjv_A           32 VLIIGERGTGKELIAS-RLHY   51 (265)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999995 5554

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=88.56  E-value=0.16  Score=45.58  Aligned_cols=20  Identities=0%  Similarity=0.101  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||+++. .+..
T Consensus       204 ~LL~G~pG~GKT~la~-~la~  223 (468)
T 3pxg_A          204 PVLIGEPGVGKTAIAE-GLAQ  223 (468)
T ss_dssp             EEEESCTTTTTHHHHH-HHHH
T ss_pred             eEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=88.54  E-value=0.17  Score=39.30  Aligned_cols=28  Identities=14%  Similarity=0.043  Sum_probs=21.7

Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|.+.+-...|-|+-.+.+..+.....+
T Consensus       128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk  155 (181)
T 3tqf_A          128 VPKILFPIHPGRNLPLLIETLVRNHRLK  155 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccEEEeccCCCCcHHHHHHHHHHHHHHH
Confidence            5678888899999999888887655443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=88.51  E-value=0.14  Score=45.48  Aligned_cols=20  Identities=5%  Similarity=0.086  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. .+.+
T Consensus       133 lll~Gp~G~GKTtLa~-aia~  152 (440)
T 2z4s_A          133 LFIYGGVGLGKTHLLQ-SIGN  152 (440)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-07
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-06
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-05
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	8e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-04
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-04
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-04
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-04
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	9e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	0.001
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.001
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	0.002
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	0.002
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	0.002
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	0.003
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	0.003

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP------DVFVIVYSVIER 132
           F++ Y P +      +              +       +           F++VYS++ +
Sbjct: 28  FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ 87

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192
           ++F+  + M   +   K   +  VILV NK DLE  R+V+ S+G+ LA  WG  F+ETS 
Sbjct: 88  QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147

Query: 193 GLVYKTDELLVGIARQ 208
                 DEL   I RQ
Sbjct: 148 KSKTMVDELFAEIVRQ 163

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
              ++VY +   K+F    + ++ + +     +   +++ NK D+  +RQV+   G+KLA
Sbjct: 80  MGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEKMILGNKCDVNDKRQVSKERGEKLA 138

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
             +G+KF+ETS       +     +AR   +  K +K
Sbjct: 139 LDYGIKFMETSAKANINVENAFFTLARD--IKAKMDK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 49  YHHVF-FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPF 107
           Y ++F  ++  D+   +  L S    ++     ++     F       +           
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 108 CSQVE----NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163
             Q                 ++VY + +  T++  E  LK L D        ++LV NK+
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKS 119

Query: 164 DLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL 218
           DL   R V   + +  A    + F+ETS       +E    I  +      + ++
Sbjct: 120 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVEN------FVQTYHPDVFVIVYSVIER 132
           FV+ Y P                +      +  +              + F+ V+S+ E 
Sbjct: 29  FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 88

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192
           ++F    D  + +   K       +LV NK+DLE +RQV+  + K  A  W V +VETS 
Sbjct: 89  ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148

Query: 193 GLVYKTDELLVGIARQ 208
                 D++   + R+
Sbjct: 149 KTRANVDKVFFDLMRE 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 49  YHHVF-FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPF 107
           Y ++F +I+  D    + CL    F  +       +   V F         Q+    +  
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQ-FTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 59

Query: 108 CSQVENFVQTYH-----PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK 162
            +  E F              ++VY +  R T+      L    +        +IL+ NK
Sbjct: 60  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNK 118

Query: 163 ADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
           ADLE +R VT+ + K+ A   G+ F+E S       ++  +  A++
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 1/144 (0%)

Query: 65  RCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFV 124
              T   F    +  +          +       Q   T      +             +
Sbjct: 21  LQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 80

Query: 125 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG 184
           +VY +  R+TF      L+            ++L+ NK+DLE RR V   +G+  A   G
Sbjct: 81  LVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG 139

Query: 185 VKFVETSVGLVYKTDELLVGIARQ 208
           + F+ETS       +E  +  A++
Sbjct: 140 LIFMETSAKTACNVEEAFINTAKE 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA 138
           F ++Y P V        +  +   T     +   +             ++ I   +    
Sbjct: 27  FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR 86

Query: 139 EDMLKTLWDSKYIGEKA-------VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
           + + +     + I E         ++LV NK D    R+V  S+ + LA  W   F+ETS
Sbjct: 87  QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 146

Query: 192 VGLVYKTDELLVGIARQAGLNKKRN 216
             L +   EL   +       K+R 
Sbjct: 147 AKLNHNVKELFQELLNLE---KRRT 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP------DVFVIVYSVIER 132
           FV  Y P +                     +  +              + F+ V+++   
Sbjct: 28  FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192
           K+F+      + +   K   +  ++LV NK D    R V     + LA ++G+ ++ETS 
Sbjct: 88  KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSA 146

Query: 193 GLVYKTDELLVGIARQ 208
                 ++    + R+
Sbjct: 147 KTRQGVEDAFYTLVRE 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP------DVFVIVYSVIER 132
           FV  Y P +       T    +        +  +              D F+IVYSV ++
Sbjct: 29  FVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 88

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
            +F+  +   + +   K      +ILVANK DL   R+VT   GK++A  + + ++ETS
Sbjct: 89  ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 147

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 1/137 (0%)

Query: 72  FCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE 131
           F  +    +          +     +     T           +     +  ++VY + +
Sbjct: 28  FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 87

Query: 132 RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
             +F+K ++ +K L          + +V NK DLE+ R V+  + +  A + G K   TS
Sbjct: 88  EDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 146

Query: 192 VGLVYKTDELLVGIARQ 208
                  +EL + + ++
Sbjct: 147 AKQNKGIEELFLDLCKR 163

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 79  FVQTYHPD--VFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP----DVFVIVYSVIER 132
           FV  Y P     +      +     L  +    Q E            + F++V+SV +R
Sbjct: 30  FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDR 89

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192
            +F++     + +   K   E  +IL+ NKADL+ +RQVT  +G++LA    V ++E S 
Sbjct: 90  GSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASA 149

Query: 193 GLVYKTDELLVGIARQ 208
            +    D+    + R 
Sbjct: 150 KIRMNVDQAFHELVRV 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
                ++VY V  R TF K ++ L  L       +   +LV NK D +  R+V  ++G K
Sbjct: 79  GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLK 137

Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
            A    + F+E S             +  +
Sbjct: 138 FARKHSMLFIEASAKTCDGVQCAFEELVEK 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 2/142 (1%)

Query: 76  VENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD--VFVIVYSVIERK 133
           V ++  T       I   D    +  +       +     + Y      F++V+++ +R+
Sbjct: 32  VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 91

Query: 134 TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193
           +F +   +   +   K   +  V+LV NKADLE +RQV  S+      +  V + E S  
Sbjct: 92  SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 151

Query: 194 LVYKTDELLVGIARQAGLNKKR 215
           L    DE    + R     +++
Sbjct: 152 LRLNVDEAFEQLVRAVRKYQEQ 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 18/95 (18%), Positives = 45/95 (47%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
             F++++ +  +++F    + +  L  + Y     ++L+ NKADL  +R+V     ++LA
Sbjct: 89  MGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA 148

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
             +G+ + ETS       ++ +  +        ++
Sbjct: 149 DKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 79  FVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP------DVFVIVYSVIER 132
           FV+ Y P +            +        +                   F +VYS+  +
Sbjct: 28  FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87

Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
            TF   +D+ + +   K   +  +ILV NK DLE  R V    G+ LA  W    F+E+S
Sbjct: 88  STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147

Query: 192 VGLVYKTDELLVGIARQ 208
                  +E+   + RQ
Sbjct: 148 AKSKINVNEIFYDLVRQ 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
              +++Y V  + +F   +    T        + A++L+ NK D    R V   DG+KLA
Sbjct: 81  HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA 139

Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
             +G+ F+ETS       D     IA++
Sbjct: 140 KEYGLPFMETSAKTGLNVDLAFTAIAKE 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 1/126 (0%)

Query: 67  LTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYH-PDVFVI 125
             +  F  + E  +     +    +  +    Q   T      +       Y      V 
Sbjct: 22  FCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81

Query: 126 VYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV 185
           VY +    +F      ++         +   ILV NK DL    QV     +K A    +
Sbjct: 82  VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 141

Query: 186 KFVETS 191
              ETS
Sbjct: 142 PLFETS 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.98
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.85
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.81
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.75
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.74
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.73
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.67
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.63
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.53
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.44
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.43
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.3
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.23
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.17
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.1
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.04
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.99
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.94
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.92
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.85
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.82
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.7
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.43
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.23
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.09
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.96
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.94
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.69
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.67
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.53
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.46
d1okkd2	207	GTPase domain of the signal recognition particle r	97.45
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.27
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.08
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.57
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.54
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.49
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.3
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.22
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.18
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.06
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.04
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.9
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.89
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.88
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.85
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.85
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.83
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.73
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.71
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.66
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.64
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.64
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.57
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.54
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.52
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.52
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.47
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.38
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.38
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.37
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.36
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.3
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.29
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.26
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.25
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.2
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.16
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.16
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.15
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.09
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.06
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.04
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.97
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.96
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.95
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.9
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.82
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.76
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.75
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.67
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.63
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.57
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.56
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.49
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.41
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.39
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.25
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.2
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.18
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.18
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.06
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.85
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.77
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.77
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.55
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.48
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.45
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.4
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.35
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.32
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.3
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.06
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.67
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.66
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.56
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.45
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.42
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	92.33
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.3
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.1
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.87
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.86
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.83
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.57
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.75
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.54
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.88
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.86
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.84
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.63
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.36
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.28
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.27
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.17
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.09
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.0
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	88.88
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	88.74
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.24
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	87.95
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	87.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	87.75
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.74
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	86.9
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.71
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	86.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	86.19
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	86.11
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.11
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.03
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	85.62
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.58
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	85.3
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	85.23
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.75
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	84.67
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	84.41
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.14
d1xpua3	289	Transcription termination factor Rho, ATPase domai	81.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	81.05
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	80.64

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=227.01  Aligned_cols=148  Identities=23%  Similarity=0.309  Sum_probs=131.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +.+||+|+|++|||||||++ +|++  ..|.+.+.++++              .+.+|||+|++  ..++..+++     
T Consensus         3 k~~Kv~liG~~~vGKTsLl~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~-----   74 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTI-QFVE--GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI-----   74 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHH-HHHH--SCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTS-----
T ss_pred             cceEEEEECCCCcCHHHHHH-HHHh--CCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhh-----
Confidence            45789999999999999998 8887  556665555543              56789999986  566677777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||+++++||+.+..|+.++.+.....++|++|||||+|+...+.++.+++++++++++++|+||||+
T Consensus        75 -----~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak  149 (167)
T d1xtqa1          75 -----DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK  149 (167)
T ss_dssp             -----SCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             -----hhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecC
Confidence                 899999999999999999999999999887777889999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.||+++|+.|++++.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998775

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=227.43  Aligned_cols=151  Identities=26%  Similarity=0.366  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc-ccccccCc----------eeEEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPD----------VFFIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~----------~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~  118 (250)
                      +||+++|++|||||||++ +|.+.... ..++.+..          ...+.+|||+|++  +.++..+++          
T Consensus         2 fKi~lvG~~~vGKTsLi~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~----------   70 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMA----------   70 (168)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHT----------
T ss_pred             eEEEEECCCCcCHHHHHH-HHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchh----------
Confidence            579999999999999998 78774111 11111111          1167789999987  566677777          


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      ++|++|+|||++++.||+++..|+.++.......++|++|||||+|+.+.++++..+++++++.++++|+||||++|.||
T Consensus        71 ~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v  150 (168)
T d2gjsa1          71 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV  150 (168)
T ss_dssp             SCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred             hhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCH
Confidence            89999999999999999999999999987766778999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy5810         199 DELLVGIARQAGLNK  213 (250)
Q Consensus       199 ~~lf~~l~~~i~~~~  213 (250)
                      +++|.+|++.+..++
T Consensus       151 ~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         151 QALFEGVVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-34  Score=226.59  Aligned_cols=148  Identities=26%  Similarity=0.366  Sum_probs=130.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+++|++|||||||++ +|++  +.|.+.+.++..              .+.+||++|++  ..+++.+++       
T Consensus         5 ~Ki~lvG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-------   74 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTI-QFFQ--KIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR-------   74 (169)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHH--SSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH-------
T ss_pred             EEEEEECCCCcCHHHHHH-HHHh--CCCCcccCcceeeccccccccccccccccccccccccccccchhhhhh-------
Confidence            569999999999999998 8887  555555555543              56789999987  455566777       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||++|++||+++..|+.++.+.....++|+++||||+|+.+.+.++.+++.+++++++++|+||||+++
T Consensus        75 ---~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~  151 (169)
T d1x1ra1          75 ---TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP  151 (169)
T ss_dssp             ---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred             ---hccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCC
Confidence               89999999999999999999999999988777778999999999999888899999999999999999999999998


Q ss_pred             C-CHHHHHHHHHHHHHhh
Q psy5810         196 Y-KTDELLVGIARQAGLN  212 (250)
Q Consensus       196 ~-~I~~lf~~l~~~i~~~  212 (250)
                      . ||+++|..|++.+.++
T Consensus       152 ~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         152 PLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             CBSHHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHHhC
Confidence            6 9999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=227.27  Aligned_cols=150  Identities=24%  Similarity=0.333  Sum_probs=129.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCccc-cCCCcccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQRC-LTPMPFCSQVENFV  115 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~~-~~~~~~~~~~~~~~  115 (250)
                      .+||+++|++|||||||++ +|++  +.|.+.+.||++              .+.+||++|++.. ....+++       
T Consensus         2 eiKi~lvG~~~vGKTsli~-r~~~--~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~-------   71 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVV-RFLT--KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMR-------   71 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHH-------
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHh--CCCCCccCCceeccccccccccccceEEEEeecccccccccchhhhc-------
Confidence            4789999999999999998 8988  666666666654              6778999998733 2234555       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         +++++++|||+++++||+.+..|...+.......+.|+++||||+|+...+.++.+++++++++++++|+||||++|
T Consensus        72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg  148 (168)
T d2atva1          72 ---WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTG  148 (168)
T ss_dssp             ---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTC
T ss_pred             ---ccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccC
Confidence               79999999999999999999998887766666788999999999999888899999999999999999999999999


Q ss_pred             C-CHHHHHHHHHHHHHhhh
Q psy5810         196 Y-KTDELLVGIARQAGLNK  213 (250)
Q Consensus       196 ~-~I~~lf~~l~~~i~~~~  213 (250)
                      . ||+++|.+|++.+.+++
T Consensus       149 ~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         149 EGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHhc
Confidence            8 59999999999887653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=224.19  Aligned_cols=147  Identities=20%  Similarity=0.304  Sum_probs=126.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|++  +.|.+.+.++.+               .+.+||++|++  +.+++.+++     
T Consensus         3 ~fKivlvG~~~vGKTsLi~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-----   74 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVL-RYCE--NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR-----   74 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHH-HHHH--CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST-----
T ss_pred             eEEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhcc-----
Confidence            4689999999999999998 8887  566666665543               67789999986  677888888     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||+++++||+.+..|+..+... .....|++|||||+|+..++.++.++++++++.++++|+||||+
T Consensus        75 -----~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak  148 (167)
T d1z08a1          75 -----DSNGAILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK  148 (167)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred             -----CCceeEEEEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecC
Confidence                 999999999999999999999999887544 34678999999999998889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||+++|.+|++.+.+
T Consensus       149 ~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         149 QNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=225.72  Aligned_cols=146  Identities=18%  Similarity=0.274  Sum_probs=127.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|.+  ..|.+.+.++++               .+.+|||+|++  ..+.+.+++     
T Consensus         2 ~iKv~liG~~~vGKSsLi~-rl~~--~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-----   73 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQ-RYCK--GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR-----   73 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT-----
T ss_pred             eEEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhc-----
Confidence            3789999999999999998 8887  455555544443               56789999986  455556666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||+++++||+++..|+.++.+..  +++|++|||||+|+.+++.++.++++++++.++++|+|+||+
T Consensus        74 -----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  146 (164)
T d1z2aa1          74 -----GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK  146 (164)
T ss_dssp             -----TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             -----cCceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccC
Confidence                 8999999999999999999999999997654  679999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||+++|++|++++++
T Consensus       147 ~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         147 EDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhC
Confidence            999999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=226.57  Aligned_cols=152  Identities=23%  Similarity=0.331  Sum_probs=132.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+|+|++|||||||++ +|++  +.|.+.+.++..              .+.+||++|++  ..++..+++    
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~----   76 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTI-QFIQ--SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR----   76 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHH-HHHH--SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH----
T ss_pred             CCeEEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhc----
Confidence            345779999999999999998 8887  556655555432              56789999987  455566777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||++++.||+.+..|+..+.+.....++|++|||||+|+...+.++.+++..+++.++++|+||||
T Consensus        77 ------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (173)
T d2fn4a1          77 ------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  150 (173)
T ss_dssp             ------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             ------cceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeC
Confidence                  89999999999999999999999999987777788999999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.||+++|+.|++.+.+.+
T Consensus       151 k~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHHHh
Confidence            999999999999999887654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.9e-34  Score=225.35  Aligned_cols=148  Identities=26%  Similarity=0.363  Sum_probs=128.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      ..||+|+|++|||||||++ +|++  +.|...+.++.+              .+.+||++|++  ..++..+++      
T Consensus         4 ~~KivlvG~~~vGKTsli~-~~~~--~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~------   74 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR------   74 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHH------
T ss_pred             eeEEEEECCCCcCHHHHHH-HHHh--CCCCcccCCccccccccccccccccccccccccccccchhhhhhhccc------
Confidence            3579999999999999998 8887  556555555543              56789999987  345566777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.||+.+..|+.++.+....+++|+++||||+|+.+.+.++.++++++++.++++|+||||++
T Consensus        75 ----~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  150 (168)
T d1u8za_          75 ----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT  150 (168)
T ss_dssp             ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             ----ccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCC
Confidence                8999999999999999999999999998877778999999999999988889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.||+++|.+|++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999988754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-33  Score=221.41  Aligned_cols=146  Identities=25%  Similarity=0.340  Sum_probs=129.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      +.+||+|+|++|||||||++ +|..  +.|.+.+.++..               .+.+||++|++  ..++..+++    
T Consensus         3 k~~Ki~lvG~~~vGKTsli~-rl~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----   75 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMW-RFVE--DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR----   75 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHH-HHHH--SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT----
T ss_pred             ceeEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHh----
Confidence            46789999999999999998 8887  566666655543               56789999987  667777888    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            +++++|+|||++++++|+.+..|+..+.+. ...+.|++|||||+|+.+.+.++.++++++++.++++|+||||
T Consensus        76 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          76 ------GSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             ------hccceEEEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence                  899999999999999999999999887654 5678999999999999888899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQA  209 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i  209 (250)
                      ++|.||+++|.+|++++
T Consensus       149 k~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         149 KNAININELFIEISRRI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999999876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-34  Score=222.74  Aligned_cols=147  Identities=27%  Similarity=0.432  Sum_probs=130.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|..  +.|.+.+.++++              .+.+||++|++  ..+++.+++      
T Consensus         3 ~~KivvvG~~~vGKTsli~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~------   73 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMK------   73 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHH------
T ss_pred             eeEEEEECCCCCCHHHHHH-HHHc--CCCCCccCCccccccceeEEeeeeEEEeccccccCccccccccccccc------
Confidence            4679999999999999998 8888  667776666665              57789999987  455667777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVG  193 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~  193 (250)
                          ++|++|+|||+++++||+++..|+..+.+....+++|++|||||+|+...+.++.+++..+++++ +++|+||||+
T Consensus        74 ----~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak  149 (167)
T d1c1ya_          74 ----NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK  149 (167)
T ss_dssp             ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred             ----ccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCC
Confidence                89999999999999999999999999988777788999999999999888899999999999885 6899999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.||+++|.+|++++.
T Consensus       150 ~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         150 SKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHhc
Confidence            99999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=223.77  Aligned_cols=148  Identities=30%  Similarity=0.473  Sum_probs=130.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      +.+||+++|++|||||||++ +|++  +.|.+++.++++              .+.+||++|++  ......+++     
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~-----   73 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTV-QFVT--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK-----   73 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH-----
T ss_pred             ceeEEEEECCCCcCHHHHHH-HHHh--CCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhh-----
Confidence            35679999999999999998 8888  566666666654              56789999986  455666777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++.||+++..|+.++.+....+++|++|||||+|+...+.+..+++..+++.++++|+||||+
T Consensus        74 -----~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  148 (167)
T d1kaoa_          74 -----NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK  148 (167)
T ss_dssp             -----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred             -----cccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCC
Confidence                 899999999999999999999999998776666789999999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.||+++|.++++++.
T Consensus       149 ~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         149 SKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHc
Confidence            99999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=222.49  Aligned_cols=148  Identities=25%  Similarity=0.359  Sum_probs=126.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV  115 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~  115 (250)
                      +||+|+|++|||||||++ +|++  +.|.+.+.++.+              .+.+||++|++  ....+.+++       
T Consensus         6 ~Ki~lvG~~~vGKTsLi~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-------   75 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTI-QFIQ--SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMR-------   75 (171)
T ss_dssp             EEEEEEECTTSSHHHHHH-HHHH--SCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHH-------
T ss_pred             eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCcccccceeeeeeeccccccccccccccccccccccccccc-------
Confidence            469999999999999998 8887  566666655543              57789999986  344455666       


Q ss_pred             ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810         116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV  195 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~  195 (250)
                         ++|++++|||+++++||+.+..|+.++.+.....+.|++|||||+|+...+.++.+++.++++.++++|+||||++|
T Consensus        76 ---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  152 (171)
T d2erya1          76 ---TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIR  152 (171)
T ss_dssp             ---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             ---ccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCC
Confidence               89999999999999999999999999887777788999999999999888899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy5810         196 YKTDELLVGIARQAGLN  212 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~  212 (250)
                      .||+++|.+|++.+.+.
T Consensus       153 ~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         153 MNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999987543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=223.90  Aligned_cols=147  Identities=22%  Similarity=0.375  Sum_probs=126.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|++  +.|.+.+.++++              .+.+||++|++  ......+++      
T Consensus         2 ~~Ki~viG~~~vGKTsLi~-r~~~--~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~------   72 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVL-RFVK--GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSIS------   72 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHT--CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHH------
T ss_pred             CeEEEEECCCCCCHHHHHH-HHHh--CCCCCccCcceeeccccceeeccccceecccccccccccccccccccc------
Confidence            3579999999999999998 8888  566666666654              56789999987  455566777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                          ++|++++|||+++++||+++..|+..+.+... ..++|++|||||+|+...+.++.++++++++.++++|+||||+
T Consensus        73 ----~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  148 (171)
T d2erxa1          73 ----KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK  148 (171)
T ss_dssp             ----HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ----ceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCC
Confidence                89999999999999999999999988876543 4678999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQAG  210 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~  210 (250)
                      +|.||+++|..|++.+.
T Consensus       149 ~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         149 LNHNVKELFQELLNLEK  165 (171)
T ss_dssp             TTBSHHHHHHHHHHTCC
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999997543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-33  Score=218.29  Aligned_cols=149  Identities=23%  Similarity=0.357  Sum_probs=127.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ +|.+  +.+.+.+.++..               .+.+||++|++  ..+++.+++      
T Consensus         4 ~KivvvG~~~vGKTsli~-r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~------   74 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLL-QFTD--KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR------   74 (173)
T ss_dssp             EEEEEESSTTSSHHHHHH-HHHH--SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT------
T ss_pred             EEEEEECCCCcCHHHHHH-HHhc--CCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhh------
Confidence            689999999999999998 7887  444444433332               67789999987  566677777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.||+.+..|+..+.+. ...++|++|||||+|+...+.+..+++..+++.++++|+||||++
T Consensus        75 ----~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~t  149 (173)
T d2a5ja1          75 ----GAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKT  149 (173)
T ss_dssp             ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ----ccCEEEEEEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCC
Confidence                899999999999999999999999988654 557899999999999988888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |.||+++|.++++.+.++..
T Consensus       150 g~~V~e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYRKIQ  169 (173)
T ss_dssp             CTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999876544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.6e-33  Score=218.51  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=126.8

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|.+  ..|.+.+.++.+               .+.+|||+|++  ..+++.+++     
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~-----   76 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLF-RYAD--DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYR-----   76 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHc--CCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHh-----
Confidence            4789999999999999998 8877  444444433332               67789999987  556777888     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++|+|||+++++++..+..|+..+... ...+.|+++||||+|+.+.+.++.+++.++++.++++|+||||+
T Consensus        77 -----~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak  150 (169)
T d3raba_          77 -----GAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK  150 (169)
T ss_dssp             -----TCCEEEEEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             -----cCCEEEEEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCC
Confidence                 899999999999999999999998877543 56789999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||+++|++|++.+.+
T Consensus       151 ~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         151 DNINVKQTFERLVDVICE  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999998765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=219.07  Aligned_cols=149  Identities=21%  Similarity=0.321  Sum_probs=124.4

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV  111 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~  111 (250)
                      ....+||+|+|++|||||||++ +|++  +.|.+.+.++++              .+.+||++|++  ..++..+++   
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~-r~~~--~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~---   79 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLM-SYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP---   79 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHH-HHHH--SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT---
T ss_pred             CCcEEEEEEECCCCCCHHHHHH-HHhh--CCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccc---
Confidence            4456889999999999999998 8887  556655555543              57799999997  567778888   


Q ss_pred             ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810         112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL  179 (250)
Q Consensus       112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~  179 (250)
                             ++|++++|||+++++||+++..|.....+.. ..++|+++||||+|+.+            .+.++.+++.++
T Consensus        80 -------~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~  151 (185)
T d2atxa1          80 -------MTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL  151 (185)
T ss_dssp             -------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred             -------ccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHH
Confidence                   8999999999999999998865544444432 46899999999999853            467899999999


Q ss_pred             HHHhC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         180 AYAWG-VKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       180 ~~~~~-~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      +++++ +.|+||||++|.||+++|+.+++.++
T Consensus       152 a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         152 AKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            99998 67999999999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=219.44  Aligned_cols=153  Identities=27%  Similarity=0.412  Sum_probs=125.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCcee-----------EEEEEeC---CCCccccCCCccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDVF-----------FIVYSDT---NHTQRCLTPMPFCSQVE  112 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~~-----------~i~i~Dt---~g~~~~~~~~~~~~~~~  112 (250)
                      .++||+++|++|||||||++ +|++....+.   ++.+....           .+.+||+   +|+++.++..+++    
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~----   76 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLAN-IFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ----   76 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHH-HHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC----
T ss_pred             CEEEEEEECCCCcCHHHHHH-HHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccc----
Confidence            35789999999999999998 7876422222   22222211           4556775   4566556666777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||+++++||+++..|..++.+.....++|++|||||+|+...+.++.++++++++.++++|+||||
T Consensus        77 ------~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa  150 (172)
T d2g3ya1          77 ------VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA  150 (172)
T ss_dssp             ------CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             ------ccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeC
Confidence                  89999999999999999999999999977666678999999999999888899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      ++|.||+++|..|++++..++
T Consensus       151 k~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         151 AVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHHHcc
Confidence            999999999999999886553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-33  Score=217.55  Aligned_cols=148  Identities=18%  Similarity=0.266  Sum_probs=127.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|++  ..|.+.+.++..               .+.+|||+|++  ..+++.+++     
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~-~l~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~-----   76 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVR-RFTQ--GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR-----   76 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh-----
Confidence            4789999999999999998 8887  444443333221               57789999987  567788888     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           +++++++|||++++.+|+.+.+|+..+.+. ....+|++|||||+|+.+.+.++.+++..+++.++++|++|||+
T Consensus        77 -----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAk  150 (171)
T d2ew1a1          77 -----SANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK  150 (171)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             -----ccceEEEeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccC
Confidence                 999999999999999999999999988654 45679999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy5810         194 LVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|.||+++|.+|++++...
T Consensus       151 tg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         151 ESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999888754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=223.28  Aligned_cols=150  Identities=18%  Similarity=0.306  Sum_probs=130.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-------------------------EEEEEeCCCCc--cccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------------------FIVYSDTNHTQ--RCLT  103 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------------------~i~i~Dt~g~~--~~~~  103 (250)
                      .+||+|+|++|||||||++ +|++  ..|.+.+.++..                         .+.+|||+|++  +.++
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~-~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLY-RYTD--NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHH-HHHC--SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHH-HHhc--CCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            4789999999999999998 8887  444443333321                         56789999987  5677


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW  183 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~  183 (250)
                      +.+++          ++|++|+|||++++.+|+.+..|+.++........+|++|||||+|+...+.++.+++.++++++
T Consensus        82 ~~~~~----------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~  151 (186)
T d2f7sa1          82 TAFFR----------DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY  151 (186)
T ss_dssp             HHHHT----------TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             HHHHh----------cCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHc
Confidence            77888          89999999999999999999999998876666678899999999999988999999999999999


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         184 GVKFVETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +++|+||||++|.||+++|++|++.+.++.
T Consensus       152 ~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         152 GIPYFETSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=217.25  Aligned_cols=147  Identities=21%  Similarity=0.331  Sum_probs=124.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +.||+|+|++|||||||++ +|.+  +.|.+.+.++++              .+.+||++|++  ..+++.+++      
T Consensus         2 r~KivvvG~~~vGKTsLi~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------   72 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLI-VNSK--DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYP------   72 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT------
T ss_pred             cEEEEEECCCCcCHHHHHH-HHHh--CCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcc------
Confidence            4689999999999999998 8888  667776666654              67799999987  567788888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA  182 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~  182 (250)
                          ++|++|+|||+++++||+++..|...+... ..+++|++|||||+|+.+            .+.++.+++.+++++
T Consensus        73 ----~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~  147 (177)
T d1kmqa_          73 ----DTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR  147 (177)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             ----cchhhhhhcccchhHHHHHHHHHHHHHHHH-hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHH
Confidence                899999999999999999987755554443 246899999999999853            346889999999999


Q ss_pred             hCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         183 WGV-KFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++. +|+||||++|.||+++|+.+++.+++
T Consensus       148 ~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         148 IGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence            984 79999999999999999999988763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-33  Score=216.45  Aligned_cols=145  Identities=23%  Similarity=0.353  Sum_probs=126.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|.+  ..|..++.++++               .+.+||++|++  ...++.++.      
T Consensus         1 fKv~vvG~~~vGKTsLi~-r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~------   71 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLIT-RFMY--DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIR------   71 (164)
T ss_dssp             CEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHT------
T ss_pred             CEEEEECCCCcCHHHHHH-HHHh--CCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhh------
Confidence            379999999999999998 8887  556665555543               56789999987  455666777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||++++.||+++..|+.++.+. ...++|++|||||+|+.+.+.+..+++.++++.++++|+||||++
T Consensus        72 ----~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~  146 (164)
T d1yzqa1          72 ----DSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA  146 (164)
T ss_dssp             ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             ----ccceEEEeeccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCC
Confidence                899999999999999999999999988665 346899999999999988888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5810         195 VYKTDELLVGIARQAG  210 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~  210 (250)
                      |.||+++|.+|++.|.
T Consensus       147 g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         147 GYNVKQLFRRVAAALP  162 (164)
T ss_dssp             CTTHHHHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHhhC
Confidence            9999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=213.58  Aligned_cols=150  Identities=19%  Similarity=0.257  Sum_probs=119.5

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+||+++|++|||||||++ +|.+  ..|.+.+.++.+                .+.+|||+|++  ...+..+++    
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~----   74 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMH-RYVN--DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR----   74 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHH--SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST----
T ss_pred             eEEEEEECCCCcCHHHHHH-HHHc--CCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhh----
Confidence            5899999999999999998 8887  455544444332                57899999986  466677777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCC-CccCHHHHHHHHHHhC-CeE
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERR-RQVTHSDGKKLAYAWG-VKF  187 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~-~~~  187 (250)
                            .++++++|||++++.||+.+..|+.++.+...   ..++|++|||||+|+.+. +.++.++++++++.++ ++|
T Consensus        75 ------~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~  148 (175)
T d1ky3a_          75 ------GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL  148 (175)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred             ------ccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeE
Confidence                  89999999999999999999999999876533   347899999999999754 4588899999999986 789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810         188 VETSVGLVYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       188 ~evSa~~~~~I~~lf~~l~~~i~~~~  213 (250)
                      +||||++|.||+++|.+|++.++++.
T Consensus       149 ~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         149 FLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-32  Score=215.20  Aligned_cols=147  Identities=20%  Similarity=0.324  Sum_probs=128.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|++  +.|.+.+.++.+              .+.+||++|++  ...++.+++      
T Consensus         3 e~Ki~viG~~~vGKTsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~------   73 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTI-QLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------   73 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--CCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHH------
T ss_pred             eeEEEEECCCCCCHHHHHH-HHHh--CCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhh------
Confidence            3679999999999999998 8888  566666666654              56789999987  344556666      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          .++++++|||++++.+|+.+..|+..+.+....+++|+++||||+|+.. +.++.++++++++.++++|+||||++
T Consensus        74 ----~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~  148 (166)
T d1ctqa_          74 ----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             ----cccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCC
Confidence                8999999999999999999999999998887778899999999999864 67889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.||+++|.++++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999988754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-32  Score=213.80  Aligned_cols=145  Identities=23%  Similarity=0.326  Sum_probs=124.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCce----e-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----F-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|.+  ..|..++.++.    .           .+.+||++|++  +.++..+++     
T Consensus         4 ~~KivlvG~~~vGKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~-----   75 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLH-QFTE--KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR-----   75 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHH-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhc-----
Confidence            3689999999999999998 8887  44443333322    1           67789999987  455667777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||+++++||+.+..|+..+.+. .....|++++|||+|+...+.+..+++..+++.++++|+||||+
T Consensus        76 -----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  149 (166)
T d1z0fa1          76 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK  149 (166)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----CCcEEEEEeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCC
Confidence                 899999999999999999999999888554 56788999999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy5810         194 LVYKTDELLVGIARQA  209 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i  209 (250)
                      +|.||+++|.+|++.+
T Consensus       150 tg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         150 TGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.7e-32  Score=214.04  Aligned_cols=143  Identities=22%  Similarity=0.287  Sum_probs=122.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc---cccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ---RCLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~---~~~~~~~~~~~~~  112 (250)
                      .+||+++|++|||||||++ +|.+  +.|.+.+.++.+               .+.+||++|..   ...++.+++    
T Consensus         2 ~~Kv~liG~~~vGKTsLl~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   74 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTY-RFCA--GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR----   74 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHH--SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeec----
Confidence            5789999999999999998 8887  444444444332               56689999976   233455677    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++|+|||++|++||+++..|+.++.+.....++|++|||||+|+.+.+.++.++++++++.++++|+||||
T Consensus        75 ------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (165)
T d1z06a1          75 ------NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA  148 (165)
T ss_dssp             ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCS
T ss_pred             ------CCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEec
Confidence                  89999999999999999999999999988777788999999999999888899999999999999999999999


Q ss_pred             CC---CCCHHHHHHHHH
Q psy5810         193 GL---VYKTDELLVGIA  206 (250)
Q Consensus       193 ~~---~~~I~~lf~~l~  206 (250)
                      ++   +.||+++|.+|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   559999999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=7.4e-32  Score=216.27  Aligned_cols=154  Identities=21%  Similarity=0.285  Sum_probs=131.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ +|.+  ..+...+.++.+               .+.+|||+|++  ..+++.+++      
T Consensus         7 ~KivvvG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~------   77 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLL-RFSD--DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR------   77 (194)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHH--CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT------
T ss_pred             EEEEEECCCCcCHHHHHH-HHhh--CCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhc------
Confidence            689999999999999998 7877  344444444332               67789999987  567888888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          +||++|+|||++++++|..+..|...+.+. ...++|+++||||+|+.+.+.++.+++..+++..+++|+|+||++
T Consensus        78 ----~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~  152 (194)
T d2bcgy1          78 ----GSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD  152 (194)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             ----cCCEEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCc
Confidence                999999999999999999999998888554 567899999999999998889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNKLL  219 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~~~  219 (250)
                      |.||+++|+++++.+.+........
T Consensus       153 g~gi~e~f~~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         153 STNVEDAFLTMARQIKESMSQQNLN  177 (194)
T ss_dssp             CTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhhhcccC
Confidence            9999999999999887655544443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2e-32  Score=214.93  Aligned_cols=147  Identities=20%  Similarity=0.307  Sum_probs=127.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|.+  +.|.+.+.++.+               .+.+||++|++  ..+++.+++     
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~-~l~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-----   77 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVL-RFVK--GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR-----   77 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhh-----
Confidence            3579999999999999998 8887  455555555443               56789999987  556667777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           +++++++|||++++++|+.+..|...+.+. ..+++|++|||||+|+...+.++.++++++++.++++|+||||+
T Consensus        78 -----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk  151 (170)
T d1r2qa_          78 -----GAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK  151 (170)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----CcceEEEEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCC
Confidence                 899999999999999999999999888654 56789999999999998889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||+++|.+|++.+.+
T Consensus       152 ~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         152 TSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TCTTHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.3e-33  Score=217.70  Aligned_cols=145  Identities=14%  Similarity=0.192  Sum_probs=120.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|++  +.|.+.+.++++               .+.+|||+|+.  ..+++.+++      
T Consensus         4 ~Ki~vvG~~~vGKTsli~-~~~~--~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------   74 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVK-RHLT--GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI------   74 (170)
T ss_dssp             EEEEEEECTTSSHHHHHH-TTC-------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTT------
T ss_pred             EEEEEECCCCcCHHHHHH-HHHh--CCCCcccccceeccccccccccccccccccccccccccccceecchhcc------
Confidence            579999999999999998 8888  445544444332               67899999986  567778888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||+++++||+.+..|+.++.+..  +++|++|||||+|+...+..  +++..+++..+++|+||||++
T Consensus        75 ----~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~  146 (170)
T d1i2ma_          75 ----QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKS  146 (170)
T ss_dssp             ----TCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTT
T ss_pred             ----cccchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCC
Confidence                8999999999999999999999999987653  68999999999999765543  456678889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy5810         195 VYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~  213 (250)
                      |.||+++|.+|++.+....
T Consensus       147 ~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         147 NYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TBTTTHHHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHHccCC
Confidence            9999999999999887543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.6e-32  Score=216.91  Aligned_cols=148  Identities=22%  Similarity=0.329  Sum_probs=124.7

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|++  +.|...+.++++              .+.+||++|++  ..+++.+++      
T Consensus         3 ~iKvvllG~~~vGKTSli~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------   73 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLI-SYTT--NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP------   73 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT------
T ss_pred             ceEEEEECCCCcCHHHHHH-HHHh--CCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccc------
Confidence            5899999999999999998 8988  677777766665              57789999987  567777888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA  182 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~  182 (250)
                          ++|++++|||+++++||+++..|....... ...++|+++||||+|+.+            .+.++.+++.+++++
T Consensus        74 ----~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (191)
T d2ngra_          74 ----QTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARD  148 (191)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             ----ccceeecccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHH
Confidence                899999999999999999998655444443 346899999999999853            346899999999999


Q ss_pred             hC-CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         183 WG-VKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       183 ~~-~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ++ ++|+||||++|.||+++|+.+++.+.+.
T Consensus       149 ~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         149 LKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             cCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            75 6899999999999999999999877644

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-32  Score=212.46  Aligned_cols=149  Identities=22%  Similarity=0.265  Sum_probs=129.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+++|++|||||||++ +|..  +.|.+.+.++..               .+.+|||+|++  ..+++.+++      
T Consensus         6 ~KI~lvG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   76 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLH-QFIE--KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR------   76 (174)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHH--SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST------
T ss_pred             EEEEEECCCCcCHHHHHH-HHHh--CCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhh------
Confidence            789999999999999998 8887  455555555433               57799999987  455677777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++++|||.+++++|+.+..|+..+... ...++|+++||||+|+...+.+..+++.++++.++++|+||||++
T Consensus        77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~  151 (174)
T d2bmea1          77 ----GAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT  151 (174)
T ss_dssp             ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             ----hCCEEEEEEecccchhHHHHhhhhcccccc-cCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCC
Confidence                899999999999999999999999998665 456899999999999988888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhh
Q psy5810         195 VYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~  214 (250)
                      |.||+++|.++++.+.++..
T Consensus       152 ~~gi~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         152 GENVEEAFVQCARKILNKIE  171 (174)
T ss_dssp             CTTHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999876543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=213.07  Aligned_cols=150  Identities=22%  Similarity=0.294  Sum_probs=123.4

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+.+||+|+|++|||||||++ +|+.  +.|.+.+.++++              .+.+||++|++  ..++..+++    
T Consensus         3 p~~iKivviG~~~vGKTsli~-~~~~--~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~----   75 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP----   75 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHH-HHHH--SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT----
T ss_pred             ceeEEEEEECCCCCCHHHHHH-HHHh--CCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhccc----
Confidence            356899999999999999998 8887  566666666554              56789999987  566677777    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA  180 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~  180 (250)
                            ++|++++|||+++++||+++..|+....+. ...++|++|||||+|+...            +.+...++..++
T Consensus        76 ------~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a  148 (183)
T d1mh1a_          76 ------QTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (183)
T ss_dssp             ------TCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             ------ccceeeeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHH
Confidence                  899999999999999999997644444333 3468999999999998533            346777899999


Q ss_pred             HHhC-CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         181 YAWG-VKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       181 ~~~~-~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ++++ ++|+||||++|.||+++|.+|++.++..
T Consensus       149 ~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             HHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence            9887 7899999999999999999999988754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.4e-31  Score=209.35  Aligned_cols=148  Identities=21%  Similarity=0.381  Sum_probs=104.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      +||+|+|++|||||||++ +|++  ..+.+.+.++.+               .+.+|||+|++  ..+++.+++      
T Consensus         7 ~Ki~vvG~~~vGKTsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~------   77 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLF-RFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------   77 (173)
T ss_dssp             EEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT------
T ss_pred             EEEEEECCCCcCHHHHHH-HHHh--CCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcc------
Confidence            679999999999999998 8887  344333333221               56789999987  677888888      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                          ++|++|+|||++++.||+.+..|...+.. ....+.|+++||||+|+...+....+++..+++..+++|++|||++
T Consensus        78 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  152 (173)
T d2fu5c1          78 ----GAMGIMLVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKA  152 (173)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred             ----CCCEEEEEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCC
Confidence                89999999999999999999999988854 3567899999999999988888888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q psy5810         195 VYKTDELLVGIARQAGLNK  213 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~  213 (250)
                      |.||+++|.+|++.+..+.
T Consensus       153 g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         153 NINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             -CCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999886544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.1e-31  Score=211.10  Aligned_cols=147  Identities=18%  Similarity=0.292  Sum_probs=124.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF  114 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~  114 (250)
                      .+||+++|++|||||||++ +|+.  +.|...+.++++              .+.+||++|++  ...++.+++      
T Consensus         2 ~~KivliG~~~vGKTsli~-r~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------   72 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP------   72 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT------
T ss_pred             ceEEEEECCCCcCHHHHHH-HHHh--CCCCCccCCceeecccccccccceEEeeccccccccccccccccchhh------
Confidence            4789999999999999998 8888  677777777654              56799999987  556677777      


Q ss_pred             cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810         115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA  182 (250)
Q Consensus       115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~  182 (250)
                          ++|++++|||+++++||+.+..|....... ...++|++|||||+|+..            .+.|+.+++.+++++
T Consensus        73 ----~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~  147 (179)
T d1m7ba_          73 ----DSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ  147 (179)
T ss_dssp             ----TCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             ----hhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH
Confidence                899999999999999999998765555443 346899999999999842            467999999999999


Q ss_pred             hCC-eEEEEecCCCCC-HHHHHHHHHHHHHh
Q psy5810         183 WGV-KFVETSVGLVYK-TDELLVGIARQAGL  211 (250)
Q Consensus       183 ~~~-~~~evSa~~~~~-I~~lf~~l~~~i~~  211 (250)
                      ++. +|+||||++|.| |+++|+.+++.+++
T Consensus       148 ~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         148 IGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            875 799999999985 99999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=208.43  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=125.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|.+  +.+...+.++.+               .+.+||++|++  ..++..+++     
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~-----   75 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLS-RFTR--NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYR-----   75 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHH-HHHH--SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhh-----
Confidence            4789999999999999998 7877  444433332221               66799999987  455666677     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++|+|||.++++||+.+..|+.++.+. ...++|++|||||+|+.+.+....+....++..++.+|+||||+
T Consensus        76 -----~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  149 (175)
T d2f9la1          76 -----GAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL  149 (175)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----ccCeEEEEEECCCcccchhHHHHHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecC
Confidence                 899999999999999999999999998665 45789999999999998877888888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +|.||+++|.++++.+.+...
T Consensus       150 ~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         150 DSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHhh
Confidence            999999999999998865433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.5e-31  Score=205.85  Aligned_cols=146  Identities=24%  Similarity=0.363  Sum_probs=120.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccccc-----ccccCcee-----------EEEEEeCCCCc--cccCCCccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV-----QTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVE  112 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-----~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~  112 (250)
                      .+||+|+|++|||||||++ +|+.+  .|.     ++.+.++.           .+.+|||+|++  +.+++.+++    
T Consensus         6 ~fKi~vvG~~~vGKTsli~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~----   78 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLV-RFKDG--AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR----   78 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHHS--CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHhC--CCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhc----
Confidence            3679999999999999998 78773  332     22222222           56789999987  577788888    


Q ss_pred             cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810         113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa  192 (250)
                            ++|++++|||+++++||..+..|+..+... .....|+++|+||+|+...+.++.+++.++++.++++|+|+||
T Consensus        79 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sa  151 (170)
T d2g6ba1          79 ------DAHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSA  151 (170)
T ss_dssp             ------GCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             ------CCceeEEEecCCcccchhhhhhhhhhhhhc-cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeC
Confidence                  899999999999999999999998887655 3567899999999999888899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQAG  210 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~  210 (250)
                      ++|.||+++|.+|++.+.
T Consensus       152 k~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         152 KTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHcC
Confidence            999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-31  Score=208.82  Aligned_cols=146  Identities=24%  Similarity=0.386  Sum_probs=124.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|.+  +.|.+.+.++.+               .+.+||++|++  ..+++.++.     
T Consensus         3 ~iKi~vvG~~~vGKTsLi~-~~~~--~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~-----   74 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVL-RFVS--NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYR-----   74 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHh-----
Confidence            4789999999999999998 8887  455555555432               67799999987  455566777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC---CCccCHHHHHHHHHHhCCeEEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER---RRQVTHSDGKKLAYAWGVKFVET  190 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~ev  190 (250)
                           ++|++++|||++++.||+++..|+.++... .....|+++|+||+|+.+   .+.++.+++.++++.++++|+||
T Consensus        75 -----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~  148 (170)
T d1ek0a_          75 -----NAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFET  148 (170)
T ss_dssp             -----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             -----ccceEEEEEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEe
Confidence                 899999999999999999999998877554 556789999999999843   47899999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~~i~  210 (250)
                      ||++|.||+++|..|+++|.
T Consensus       149 Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         149 SAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTTCTTHHHHHHHHHTTSC
T ss_pred             cCCCCcCHHHHHHHHHHHhc
Confidence            99999999999999987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=206.20  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=127.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|.+  +.|.+.+.++.+               .+.+|||+|++  ..+++.++.     
T Consensus         7 ~iKi~vvG~~~vGKTsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   78 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLL-RFTD--DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR-----   78 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHH--SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT-----
T ss_pred             eeEEEEECCCCcCHHHHHH-HHHh--CCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHh-----
Confidence            4789999999999999998 7887  444443333221               67899999987  455556666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||++++.+|+.+..|+.++.+.......|+++++||.|.. .+.++.+++.+++++++++|+++||+
T Consensus        79 -----~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~  152 (177)
T d1x3sa1          79 -----GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAK  152 (177)
T ss_dssp             -----TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----cCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCC
Confidence                 899999999999999999999999999776666789999999999975 47899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhh
Q psy5810         194 LVYKTDELLVGIARQAGLNKK  214 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~  214 (250)
                      +|.||+++|+++++.+.+.+.
T Consensus       153 tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHccCcc
Confidence            999999999999999987653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=204.28  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=120.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|+.  +.|.+.+.++++               .+.+||++|+.  ....+.++.     
T Consensus         6 ~~KI~vvG~~~vGKSSli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-----   77 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMN-RYVT--NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR-----   77 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHH--SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT-----
T ss_pred             eEEEEEECCCCCCHHHHHH-HHHh--CCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhh-----
Confidence            4679999999999999998 8887  555555555443               56689999976  344555556     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVE  189 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e  189 (250)
                           .+++++++||.+++.||+.+..|++++.+..   ...++|++|||||+|+.+ +.++.+++++++++.+ ++|+|
T Consensus        78 -----~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          78 -----GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEE
T ss_pred             -----ccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEE
Confidence                 8999999999999999999999998886653   234689999999999864 7899999999998874 78999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      |||++|.||+++|++|++.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5.9e-30  Score=203.17  Aligned_cols=151  Identities=21%  Similarity=0.283  Sum_probs=124.2

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+|+|++|||||||++ +|++  +.|...+.++++               .+.+||++|+.  ...+..++.     
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~-~l~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-----   73 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMN-QYVN--KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR-----   73 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHH-HHHH--SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccccccc-----
Confidence            4789999999999999998 8887  555555555442               56689999976  555666666     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCeEEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVKFVE  189 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e  189 (250)
                           .+|++++|||.+++.+|+.+..|+.++.....   ..++|++|||||+|+.+ +.+..++..+++.. .+++|+|
T Consensus        74 -----~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e  147 (184)
T d1vg8a_          74 -----GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFE  147 (184)
T ss_dssp             -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEE
T ss_pred             -----CccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEE
Confidence                 89999999999999999999999998876533   24689999999999865 56777777777754 5789999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810         190 TSVGLVYKTDELLVGIARQAGLNKKR  215 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~~~~~~  215 (250)
                      |||++|.||+++|++|++.+.+++..
T Consensus       148 ~Sak~~~gI~e~f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         148 TSAKEAINVEQAFQTIARNALKQETE  173 (184)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999988876553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.2e-30  Score=200.15  Aligned_cols=147  Identities=23%  Similarity=0.371  Sum_probs=121.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN  113 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~  113 (250)
                      .+||+++|++|||||||++ +|+.  +.+.+.+.++.+               .+.+|||+|++  ..+++.+++     
T Consensus         2 ~~Ki~vvG~~~vGKTSli~-~l~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-----   73 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLV-RFVE--DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYR-----   73 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHH--CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHT-----
T ss_pred             EEEEEEECCCCcCHHHHHH-HHHh--CCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh-----
Confidence            5899999999999999998 8887  444444433332               56789999986  666777777     


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG  193 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  193 (250)
                           ++|++++|||.++++||+.+..|...+... .....|++++++|.|+.. +.+..+++.++++.++++|++|||+
T Consensus        74 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T d1g16a_          74 -----GAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAK  146 (166)
T ss_dssp             -----TEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred             -----cCCEEEEEEECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCC
Confidence                 899999999999999999999988877654 456788999999999854 5677899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy5810         194 LVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~  212 (250)
                      +|+||+++|.+|++.+.++
T Consensus       147 ~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         147 NDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999888654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=199.39  Aligned_cols=150  Identities=14%  Similarity=0.195  Sum_probs=120.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCc-------------eeEEEEEeCCCCccccCCCcccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-------------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-------------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~  117 (250)
                      .+||+++|++|||||||++ +|.++  .|.......             ...+.+|||+|++..   .|++         
T Consensus         5 ~~ki~vlG~~~vGKTsLi~-~~~~~--~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~---~~~~---------   69 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIH-RFLTG--SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---KFSG---------   69 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHH-HHHHS--CCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH---HHHH---------
T ss_pred             cEEEEEECCCCCCHHHHHH-HHHhC--CCCCcCCccceeEEEEeecCceEEEEEEeeccccccc---cccc---------
Confidence            5789999999999999998 78773  333221111             116779999998742   3666         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCcc--CCCccCHHHHHHHHHH-hCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLE--RRRQVTHSDGKKLAYA-WGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~evSa  192 (250)
                       ++|++|+|||+++++||+++..|+.++...+  ...++|+++||||.|+.  ..+.++.+++..++.. ++++|+||||
T Consensus        70 -~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          70 -WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             -HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             -ccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCC
Confidence             8999999999999999999999999886543  34578999999988874  4577899999999765 4688999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810         193 GLVYKTDELLVGIARQAGLNKKRN  216 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~~~~~  216 (250)
                      ++|.||+++|..+++.+...+..+
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999988765443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.5e-29  Score=200.34  Aligned_cols=152  Identities=13%  Similarity=0.030  Sum_probs=116.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      ..+.+||+++|++|||||||++ ++.+. .....+|.+....       .+.+||++|++  +.++..++.         
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---------   83 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILY-RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYA---------   83 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHH-HTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTT---------
T ss_pred             CCceEEEEEECCCCCCHHHHHH-HHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhc---------
Confidence            4456889999999999999998 78774 1122234443333       67899999987  567777887         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa  192 (250)
                       ++|++++|||++++.+|..+..|+.++.+.....+.|+++||||+|+.+.  ++..+..+     .+...+++++||||
T Consensus        84 -~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          84 -DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             -TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             -cceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence             89999999999999999999999888776666678999999999998642  23333322     23444678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy5810         193 GLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ++|+||+++|++|++.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999888654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=1e-29  Score=198.10  Aligned_cols=144  Identities=13%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      +.+||+++|++|||||||++ +|.+  ..+.+.+.+|++           .+.+||++|++  ...+..++.        
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~-~l~~--~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--------   69 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVN-VIAS--GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCR--------   69 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHH--SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHT--------
T ss_pred             CeEEEEEECCCCCCHHHHHH-HHHc--CCCCCcccccceeeeeeeeeeeEEEEEeecccccccccccccccc--------
Confidence            36899999999999999998 8887  555555555543           67799999987  555666777        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-----HHHHHhCCeEEEEe
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-----KLAYAWGVKFVETS  191 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~evS  191 (250)
                        +++++++|||++++++|+.+..|+..+.+....+++|++|||||.|+.+..  ...+..     .+++..+++++|+|
T Consensus        70 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~S  145 (164)
T d1zd9a1          70 --GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSIS  145 (164)
T ss_dssp             --TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             --ccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEe
Confidence              899999999999999999999999988777667789999999999986532  222222     22334467899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQ  208 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~  208 (250)
                      |++|.||+++|++|++.
T Consensus       146 a~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         146 CKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             TTTCTTHHHHHHHHHHT
T ss_pred             CcCCcCHHHHHHHHHHc
Confidence            99999999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.95  E-value=2.2e-28  Score=190.45  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=113.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      .+||+++|++|||||||++ +|.+.  .+ .++.++.+           .+.+|||+|++  +..+..++.         
T Consensus         2 ~~ki~ivG~~~~GKTsLi~-~l~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---------   68 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILK-KFNGE--DV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE---------   68 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHH-HHTTC--CC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCT---------
T ss_pred             cEEEEEECCCCCCHHHHHH-HHcCC--CC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhh---------
Confidence            4789999999999999998 78773  22 34444443           67789999987  456677777         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa  192 (250)
                       .++++++|||+++..+|.....|+..........++|+++|+||+|+.+...+  ++.....     +..++++++|||
T Consensus        69 -~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa  145 (165)
T d1ksha_          69 -STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSA  145 (165)
T ss_dssp             -TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             -hhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEEC
Confidence             89999999999999999999887777766556678999999999999764443  3322221     223467999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy5810         193 GLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i~~  211 (250)
                      ++|+||+++|++|++++..
T Consensus       146 ~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         146 VTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHc
Confidence            9999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=6.5e-29  Score=195.18  Aligned_cols=149  Identities=11%  Similarity=0.042  Sum_probs=113.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +.+||+++|++|||||||++ +|.++. ....++.+....       .+.+||++|+.  +..+..+++          +
T Consensus        11 k~~kIvlvG~~~vGKTSli~-rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----------~   79 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT----------G   79 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHH-HTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTT----------T
T ss_pred             CeEEEEEECCCCCCHHHHHH-HHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhc----------c
Confidence            45889999999999999998 887741 112223232222       67789999986  566677777          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc---cCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---VTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      ++++++|||+++.+++..+..|+....+.....+.|+++|+||+|+.+...   +....+...++..++.++||||++|+
T Consensus        80 ~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~  159 (173)
T d1e0sa_          80 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD  159 (173)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             cceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCc
Confidence            999999999999999999999988887765667899999999999965321   22222222334446779999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQA  209 (250)
Q Consensus       197 ~I~~lf~~l~~~i  209 (250)
                      ||.|+|++|.+.+
T Consensus       160 gv~e~~~~l~~~~  172 (173)
T d1e0sa_         160 GLYEGLTWLTSNY  172 (173)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.95  E-value=3.9e-28  Score=190.85  Aligned_cols=145  Identities=16%  Similarity=0.118  Sum_probs=112.5

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCcee-------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ  116 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~  116 (250)
                      .+.+||+++|++|||||||++ +|.++  .+.   ++.+.+..       .+.+||++|++  +..+..++.        
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~-~l~~~--~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~--------   82 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLK-QLASE--DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE--------   82 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHH-HHCCS--CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHT--------
T ss_pred             CCEEEEEEECCCCCCHHHHHH-HHhcC--CCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhh--------
Confidence            356889999999999999998 88773  332   23332322       67789999987  455666777        


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEe
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETS  191 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evS  191 (250)
                        .+|++++|||++++.+|+++..|+.++.......++|++|||||+|+.....  ..+..+     .++...+++++||
T Consensus        83 --~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T d1fzqa_          83 --NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCS  158 (176)
T ss_dssp             --TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             --ccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEe
Confidence              8999999999999999999999988887766667899999999999965332  222222     2233456799999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy5810         192 VGLVYKTDELLVGIARQ  208 (250)
Q Consensus       192 a~~~~~I~~lf~~l~~~  208 (250)
                      |++|+||+++|+||++.
T Consensus       159 A~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         159 ALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTTCTTHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=7.2e-28  Score=185.46  Aligned_cols=145  Identities=15%  Similarity=0.074  Sum_probs=113.2

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee----------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +||+++|++|||||||++ +|.+  +.+..++.....          .+.+||++|++  ...+..++.          .
T Consensus         1 ikivlvG~~~vGKSsLi~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~----------~   67 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILY-KLKL--GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------N   67 (160)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH--HCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTT----------T
T ss_pred             CEEEEECCCCCCHHHHHH-HHhc--CCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhc----------c
Confidence            589999999999999998 7877  444333322221          67889999986  344455566          8


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC---ccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR---QVTHSDGKKLAYAWGVKFVETSVGLVY  196 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---~v~~~~~~~~~~~~~~~~~evSa~~~~  196 (250)
                      +++++++||++++.++..+..|+.++........+|+++++||.|+....   ++.......+++..++++++|||++|+
T Consensus        68 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~  147 (160)
T d1r8sa_          68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD  147 (160)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             ceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCC
Confidence            99999999999999999999999888777677789999999999986432   222222334455567889999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy5810         197 KTDELLVGIARQA  209 (250)
Q Consensus       197 ~I~~lf~~l~~~i  209 (250)
                      ||+++|++|++++
T Consensus       148 gi~e~~~~l~~~l  160 (160)
T d1r8sa_         148 GLYEGLDWLSNQL  160 (160)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=169.24  Aligned_cols=145  Identities=11%  Similarity=0.082  Sum_probs=107.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      +.+||+|+|++|||||||++ ++.+.  .+.+   +.+....       .+.+||++|.+  +..+..++.         
T Consensus        14 k~~kI~vvG~~~~GKSsLi~-rl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---------   81 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILY-QFSMN--EVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT---------   81 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHH-HHHTT--SCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHT---------
T ss_pred             CeEEEEEECCCCCCHHHHHH-HHhcC--CCCccccccceeEEEEeecceEEEEeccccccccccchhhhhc---------
Confidence            34779999999999999998 78873  3332   2222211       67789999876  444555555         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEec
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSV  192 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa  192 (250)
                       .++++++++|.++..+++....+.............|+++|+||+|+.....  ..+....     +...+++++++||
T Consensus        82 -~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa  158 (177)
T d1zj6a1          82 -NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCA  158 (177)
T ss_dssp             -TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             -cceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeC
Confidence             7999999999999999999887777776666667899999999999865332  2222222     2334567999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQA  209 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i  209 (250)
                      ++|+||+++|++|++++
T Consensus       159 ~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         159 LTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.90  E-value=7.3e-24  Score=163.83  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=110.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      .+||+++|++|||||||++ +|.+  ..+..++ ++.+           .+.+||.+|.+  ......++.         
T Consensus         5 e~kI~ivG~~~vGKSSLi~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (169)
T d1upta_           5 EMRILILGLDGAGKTTILY-RLQV--GEVVTTI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYS---------   71 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHH-HHHH--SSCCCCC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCT---------
T ss_pred             ceEEEEECCCCCCHHHHHH-HHhC--CCCccee-cccceeeeeeccCceEEEEeeccccccccccchhhhh---------
Confidence            3679999999999999998 8887  4444332 2221           56678888765  444445555         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc---cCHHHHHHHHHHhCCeEEEEecCC
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---VTHSDGKKLAYAWGVKFVETSVGL  194 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~evSa~~  194 (250)
                       .++++++++|+++..++.....+.....+.......|+++++||.|+.....   +..+.+..++...+++|++|||++
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~  150 (169)
T d1upta_          72 -NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK  150 (169)
T ss_dssp             -TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred             -hhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence             7999999999999999988888766666655667889999999999965332   222233344555678899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy5810         195 VYKTDELLVGIARQAGL  211 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~  211 (250)
                      |.||+++|++|++.+.+
T Consensus       151 g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         151 GTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.6e-24  Score=167.90  Aligned_cols=149  Identities=10%  Similarity=0.017  Sum_probs=106.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      +.+||+++|+.|||||||++ ||..  ..+.+.+..+..      .+++|||+|++  +.++..|++          +++
T Consensus         1 ~e~KivllG~~~vGKTsl~~-r~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~----------~~~   67 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVK-QMKI--IHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE----------GVT   67 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHH-HHHH--HHSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT----------TCS
T ss_pred             CceEEEEECCCCCCHHHHHH-HHhh--CCCCCccEEEEEEEeeeeeeeeeccccccccccchhhccc----------CCc
Confidence            36889999999999999998 7876  444433332222      78899999997  788899999          999


Q ss_pred             EEEEEEeCCCHHhHH-----------HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC---------------ccCHHH
Q psy5810         122 VFVIVYSVIERKTFK-----------KAEDMLKTLWDSKYIGEKAVILVANKADLERRR---------------QVTHSD  175 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~-----------~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------------~v~~~~  175 (250)
                      ++++|||+++..+|.           ....|.. +.........|+++++||+|+...+               .....+
T Consensus        68 ~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~-i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (195)
T d1svsa1          68 AIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE  146 (195)
T ss_dssp             EEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH-HHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHH
T ss_pred             eeeeEEeecccchHHHHhhhhHHHHHHHHHHHH-HhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHH
Confidence            999999999988762           2333443 4344556789999999999972110               112222


Q ss_pred             HHHHH-HH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         176 GKKLA-YA----------WGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       176 ~~~~~-~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +..+. ..          ..+.+++|||+++.||+++|+.+.+.++++
T Consensus       147 ~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         147 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            22211 11          134577999999999999999998877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.2e-24  Score=169.51  Aligned_cols=151  Identities=10%  Similarity=-0.001  Sum_probs=112.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      +.+||+++|+.|||||||++ +|......+.+|+|....       .+++||++|++  +..+..+++          ++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~-r~~~~~~~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~----------~~   69 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIK-QMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE----------NV   69 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHH-HHHHHTSSCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCS----------SC
T ss_pred             CeeEEEEECCCCCCHHHHHH-HHhCCCCCCCceeeEEEEEEeccceeeeecccccccccccccccccc----------cc
Confidence            46889999999999999998 887754445556655544       57799999997  788889998          89


Q ss_pred             cEEEEEEeCCCHH-----------hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC----------------ccCH
Q psy5810         121 DVFVIVYSVIERK-----------TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR----------------QVTH  173 (250)
Q Consensus       121 d~iilV~D~~~~~-----------Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~v~~  173 (250)
                      ++++++||.++..           .++.+..|...+ +.....+.|+++++||+|+.+.+                .-+.
T Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l-~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  148 (200)
T d2bcjq2          70 TSIMFLVALSEYDQVLVESDNENRMEESKALFRTII-TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA  148 (200)
T ss_dssp             SEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH-HCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCH
T ss_pred             ceeeEeeeccchhhhhhhhccccchHHHHHHHHHHH-hhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhH
Confidence            9999999998864           455666676655 34455789999999999983211                1223


Q ss_pred             HHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         174 SDGKKLAYA----------WGVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       174 ~~~~~~~~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      ..+..+...          ..+.+++|||++|.||.++|+.+.+.|.+.
T Consensus       149 ~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         149 QAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            333333221          134478999999999999999998887754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-22  Score=154.11  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCchhhhchhhhccccc-cccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      ||+++|++|||||||++ ++.++.. ...++.+.+..       ...+||+.|..  ......++.          .+++
T Consensus         2 KI~liG~~nvGKSSLln-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~   70 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLH-MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFP----------EVNG   70 (166)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCT----------TCSE
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhh----------heee
Confidence            79999999999999999 7887311 12223332222       56689998865  445556666          8999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH------------HHhCCeEEEE
Q psy5810         123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA------------YAWGVKFVET  190 (250)
Q Consensus       123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------------~~~~~~~~ev  190 (250)
                      +++++|.++..++.....|.....+.....+.|+++++||.|+..  .+...+..+..            ...++++++|
T Consensus        71 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (166)
T d2qtvb1          71 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC  148 (166)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEE
T ss_pred             eeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEe
Confidence            999999999999999988888887777777899999999999864  23333333222            1223569999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy5810         191 SVGLVYKTDELLVGIAR  207 (250)
Q Consensus       191 Sa~~~~~I~~lf~~l~~  207 (250)
                      ||++|+||+|+|+||.+
T Consensus       149 SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         149 SVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             BTTTTBSHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHhC
Confidence            99999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.5e-22  Score=159.16  Aligned_cols=150  Identities=11%  Similarity=0.042  Sum_probs=106.8

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      .+||+++|++|||||||++ ||.. .....+|+|....       .+.+||++|++  +..+..+++          +++
T Consensus         2 ~iKivllG~~~vGKTsll~-r~~f-~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~----------~~~   69 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLK-QMRI-IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFD----------SVT   69 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHH-HHHH-HHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCT----------TCC
T ss_pred             eEEEEEECCCCCCHHHHHH-HHhc-CCCCCCeeeeEEEEEeeeeeeeeeecccceeeeccccccccc----------ccc
Confidence            5899999999999999998 7732 2344556654433       57789999997  678889999          899


Q ss_pred             EEEEEEeCCCHH----------hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC----------------ccCHHH
Q psy5810         122 VFVIVYSVIERK----------TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR----------------QVTHSD  175 (250)
Q Consensus       122 ~iilV~D~~~~~----------Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~v~~~~  175 (250)
                      +++++||.++..          .++....|+..+.......++|++|+|||+|+.+.+                .-+.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~  149 (200)
T d1zcba2          70 SILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRD  149 (200)
T ss_dssp             EEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHH
T ss_pred             eeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHH
Confidence            999999999853          355566677777666666789999999999983210                112334


Q ss_pred             HHHHHHHh-----------CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         176 GKKLAYAW-----------GVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       176 ~~~~~~~~-----------~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                      +.++....           .+.++++||+++.||+++|+.+.+.+.+.
T Consensus       150 ~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         150 VQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            44433321           24467899999999999999988777654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.9e-22  Score=158.52  Aligned_cols=152  Identities=15%  Similarity=0.065  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCchhhhchhhhcccccc-ccccccCc----e-------eEEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPD----V-------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP  120 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~----~-------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a  120 (250)
                      +|+|+|.+|||||||++ ++++.... .....+.+    .       ..+.+|||+|...................+++|
T Consensus         7 ~I~lvG~~~~GKSSLin-~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLN-NLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            69999999999999998 78874211 11111111    1       167889999985322111111011111223489


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCCCCCHH
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGLVYKTD  199 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~~~I~  199 (250)
                      |++++|+|++++.+... ..|...+.+  ...+.|+++|+||+|+....   .+....+.+..+ ..++++||++|.||+
T Consensus        86 d~il~v~D~~~~~~~~~-~~i~~~l~~--~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~  159 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTPED-ELVARALKP--LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQVA  159 (178)
T ss_dssp             SEEEEEEETTSCCCHHH-HHHHHHHGG--GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred             cceeeeechhhhhcccc-cchhhheec--cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCHH
Confidence            99999999998755433 334444433  23578999999999985421   233344445444 468999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy5810         200 ELLVGIARQAGL  211 (250)
Q Consensus       200 ~lf~~l~~~i~~  211 (250)
                      ++++++++.+.+
T Consensus       160 ~L~~~i~~~lpe  171 (178)
T d1wf3a1         160 ELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHTTCCB
T ss_pred             HHHHHHHHhCCC
Confidence            999999887653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.86  E-value=1.3e-21  Score=153.28  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=105.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT  117 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~  117 (250)
                      +..||+++|++|||||||++ +|.++  .+.   ++.+.+..       .+..||+.++.  ...+..++.         
T Consensus        12 k~~kI~lvG~~~vGKTsLl~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   79 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLH-MLKDD--RLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP---------   79 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHH-HHSCC--------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG---------
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHhCC--CCcceecccccceeEEEecccccccccccchhhhhhHHhhhhc---------
Confidence            45789999999999999998 88873  332   23333332       45678888765  334445555         


Q ss_pred             CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH---------------
Q psy5810         118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA---------------  182 (250)
Q Consensus       118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~---------------  182 (250)
                       ..+++++++|+++...+.....+...........+.|+++++||.|+..  .+...+..+....               
T Consensus        80 -~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1f6ba_          80 -AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKEL  156 (186)
T ss_dssp             -GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred             -ccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHh
Confidence             7999999999999999998887766666655667899999999999864  3344444443321               


Q ss_pred             --hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         183 --WGVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       183 --~~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                        .++++++|||++|+||+|+|+||++.+
T Consensus       157 ~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         157 NARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence              134689999999999999999998653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1e-22  Score=157.03  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=99.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYH  119 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~  119 (250)
                      +||+++|++|||||||+| ++++...... ...+.+..           .+.+||++|.....................+
T Consensus         2 ~kI~lvG~~nvGKSsLin-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLN-ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            689999999999999998 8876422211 11122111           6678999997532111111101111111228


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|++++++|..+..+++....|...+..  ...+.|+++|+||+|+..+...       +.+..+.+++++||++|.||+
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIAR--LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHH--SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhh--cccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            9999999999999888887777666643  3357999999999998543221       111235679999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         200 ELLVGIARQA  209 (250)
Q Consensus       200 ~lf~~l~~~i  209 (250)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.6e-20  Score=147.53  Aligned_cols=153  Identities=11%  Similarity=0.020  Sum_probs=99.6

Q ss_pred             EEEEcCCCCchhhhchhhhcccccccc----ccccCcee--------EEEEEeCCCCccccCCCccccccccccccCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF--------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~--------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad  121 (250)
                      |+|+|.+|||||||+| +|++......    .+...+++        .+++|||+|......... .........+..++
T Consensus         4 VaivG~~nvGKSTLin-~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~l~~~~~~~   81 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLA-AMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK-GLGLEFLRHIARTR   81 (180)
T ss_dssp             EEEECCGGGCHHHHHH-HHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC-CSCHHHHHHHTSSS
T ss_pred             EEEECCCCCCHHHHHH-HHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHH-HHHHHHHHHHHhhh
Confidence            8999999999999999 7877422221    22222222        688999999753211110 00111111223789


Q ss_pred             EEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         122 VFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       122 ~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      ++++++|....  .+++....|+.....  ...+.|+++|+||+|+.....  .++..+.....+.+++++||++|.||+
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            99999998653  344444555544321  123579999999999865322  233445555668899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy5810         200 ELLVGIARQAGLN  212 (250)
Q Consensus       200 ~lf~~l~~~i~~~  212 (250)
                      ++++.+.+.+...
T Consensus       158 ~L~~~i~~~l~~~  170 (180)
T d1udxa2         158 ALKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998877543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.5e-20  Score=152.88  Aligned_cols=148  Identities=12%  Similarity=0.038  Sum_probs=108.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV  122 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~  122 (250)
                      .||+++|+.|||||||++ +|..  ..+.+|+|....       .+++||++||+  +..|..++.          ++++
T Consensus         7 ~KilllG~~~vGKTsll~-~~~~--~~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~----------~~~~   73 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVK-QMRI--LHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFN----------DVTA   73 (221)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH--HHCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCT----------TCSE
T ss_pred             CEEEEECCCCCCHHHHHH-HHhc--CCcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcc----------cccc
Confidence            569999999999999998 7876  677888887654       66789999987  677888888          8999


Q ss_pred             EEEEEeCCCHH----------hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc----c-----------------
Q psy5810         123 FVIVYSVIERK----------TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ----V-----------------  171 (250)
Q Consensus       123 iilV~D~~~~~----------Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v-----------------  171 (250)
                      +++|+|+++..          .+.+...++..+.......++|++|+|||+|+.+.+.    .                 
T Consensus        74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~  153 (221)
T d1azta2          74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPED  153 (221)
T ss_dssp             EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTT
T ss_pred             eEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccc
Confidence            99999998643          3344444555565555567899999999999843211    0                 


Q ss_pred             ---------CHHHHHHHHH-----Hh--------CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810         172 ---------THSDGKKLAY-----AW--------GVKFVETSVGLVYKTDELLVGIARQAGLN  212 (250)
Q Consensus       172 ---------~~~~~~~~~~-----~~--------~~~~~evSa~~~~~I~~lf~~l~~~i~~~  212 (250)
                               ...++..+..     .+        .+-..++||.++.||..+|+.+.+.|++.
T Consensus       154 ~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         154 ATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                     1222333321     11        12246899999999999999988777654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=6.4e-20  Score=142.84  Aligned_cols=152  Identities=15%  Similarity=0.019  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccc-cccccCc----e-------eEEEEEeCCCCccccCCCcccccccc-ccccCC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPD----V-------FFIVYSDTNHTQRCLTPMPFCSQVEN-FVQTYH  119 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~----~-------~~i~i~Dt~g~~~~~~~~~~~~~~~~-~~~~~~  119 (250)
                      .|+|+|.+|||||||++ +|++..... ....+.+    .       ..+.+||++|................ ...+..
T Consensus         2 ~V~liG~~n~GKSsLi~-~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFN-KLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            48999999999999998 787742211 1112222    1       16778999996522211111111111 112237


Q ss_pred             CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810         120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD  199 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~  199 (250)
                      +|+++++.|.++...... ..|+..+..    .++|+++|+||+|+.+.  ...+...++.+....+++++||++|.||+
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             CcEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999999887655433 345554543    36799999999998531  11222222332233458999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy5810         200 ELLVGIARQAGLN  212 (250)
Q Consensus       200 ~lf~~l~~~i~~~  212 (250)
                      +++++|.+.+.++
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=9.4e-20  Score=139.99  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=92.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccccCCCcccccccccc-ccC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFV-QTY  118 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~-~~~  118 (250)
                      +||+++|.+|||||||+| ++++..... ....+.+.           ..+.+|||+|..............+.+. .++
T Consensus         1 ikI~liG~~n~GKSSLin-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLN-RLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHH-HHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            689999999999999999 787642111 11111111           1677899999642221111111111111 123


Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+|++++|+|.+++.+.+...-+ ..+      ...++++++||.|+.+..  ..++... ....+.+++++||++|.||
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             hCCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            79999999999998766544322 222      467899999999986532  2333222 1223567999999999999


Q ss_pred             HHHHHHHHHH
Q psy5810         199 DELLVGIARQ  208 (250)
Q Consensus       199 ~~lf~~l~~~  208 (250)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.3e-18  Score=135.40  Aligned_cols=155  Identities=18%  Similarity=0.116  Sum_probs=94.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-----e-------eEEEEEeCCCCccc--cCCCccc--ccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-----V-------FFIVYSDTNHTQRC--LTPMPFC--SQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-----~-------~~i~i~Dt~g~~~~--~~~~~~~--~~~~~  113 (250)
                      +.+||+|+|.+|||||||+| ++++........+..+     .       ..+.++|++|....  .+.....  .....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFN-AILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHH-HHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHH-HHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            35789999999999999999 7876422111111111     1       15667899996421  1111111  01111


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-----CCeEE
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-----GVKFV  188 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~  188 (250)
                      ...+..+|++++|+|.+.+..-+ ...++..+..    .+.|+|+|+||+|+........++..+.....     ..+++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhcCCEEEEeecccccchhh-HHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            11223789999999998754322 2334444433    47899999999998654443344444433322     34699


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      ++||++|.|++++++.|.+.+.
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999966544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.4e-18  Score=134.89  Aligned_cols=151  Identities=15%  Similarity=-0.004  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee-------EEEEEeCCCCcccc-CCCcc----cccccc--ccccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------FIVYSDTNHTQRCL-TPMPF----CSQVEN--FVQTY  118 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------~i~i~Dt~g~~~~~-~~~~~----~~~~~~--~~~~~  118 (250)
                      .|+++|.+|||||||+| ++.+.........+.|..       .+.+|||||..... .+...    ......  ....+
T Consensus         2 ~I~lvG~~nvGKSsLin-~l~~~~~~~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIY-RLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEEEEEBTTSSHHHHHH-HHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCceeeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            38999999999999999 788743222222222321       56789999953111 00000    000000  01112


Q ss_pred             CCcEEEEEEeCCCHHhHHHHH----------HHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC----
Q psy5810         119 HPDVFVIVYSVIERKTFKKAE----------DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG----  184 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~----------~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----  184 (250)
                      .+|++++|+|.+.+.......          +.++.+..    .+.|+++|+||+|+.+...   .....+.+..+    
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLS  153 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGG
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHH---HHHHHHHHHhccccc
Confidence            689999999998654332211          12222322    4789999999999754221   12222233332    


Q ss_pred             ---CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 ---VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ---~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                         ..++++||++|.||+++++.+.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence               238899999999999999999987764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=4.9e-19  Score=139.36  Aligned_cols=150  Identities=16%  Similarity=0.032  Sum_probs=91.4

Q ss_pred             EEEEcCCCCchhhhchhhhcccccccc----ccccCcee--------EEEEEeCCCCcccc--CCCccccccccccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF--------FIVYSDTNHTQRCL--TPMPFCSQVENFVQTYH  119 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~--------~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~~~  119 (250)
                      |+|+|.+|||||||+| ++.+......    .|..+++.        .+.+|||||..+..  ............   ..
T Consensus         4 VaiiG~~nvGKSSLin-~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~---~~   79 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLS-VVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---ER   79 (185)
T ss_dssp             EEEESSTTSSHHHHHH-HSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---HH
T ss_pred             EEEECCCCCCHHHHHH-HHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHH---HH
Confidence            9999999999999999 7876422211    12222222        57899999964211  111111111111   15


Q ss_pred             CcEEEEEEeCCCHHhHHHHH---HHHHHHH-hhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecC
Q psy5810         120 PDVFVIVYSVIERKTFKKAE---DMLKTLW-DSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVG  193 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf~~~~---~~~~~i~-~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~  193 (250)
                      ++.++++.+...........   .+..... ......++|+++|+||+|+.+.    .+....+.+.+  +.+++.+||+
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECC
Confidence            78888888766543222211   1111111 1123346899999999998652    22334444444  5779999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy5810         194 LVYKTDELLVGIARQAGL  211 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~  211 (250)
                      +|.||++++..+.+.+..
T Consensus       156 ~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         156 TREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CSSTTHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHhhhh
Confidence            999999999999987754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.74  E-value=3.7e-18  Score=133.97  Aligned_cols=149  Identities=14%  Similarity=0.082  Sum_probs=90.9

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccccccc-c------cccCcee-----------EEEEEeCCCCccccCCCccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-Q------TYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQ  110 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~------~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~  110 (250)
                      .+.++|+++|.+|+|||||+| ++++...... +      ..+.+..           .+.++|++|......       
T Consensus         3 ~k~inIaiiG~~naGKSTL~n-~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------   74 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSK-VLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR-------   74 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHH-HHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHH-------
T ss_pred             CCCEEEEEEeCCCCcHHHHHH-HHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccccccc-------
Confidence            456789999999999999999 7876311110 0      0011111           456778887642111       


Q ss_pred             cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC--HHHHHHHHHHh----C
Q psy5810         111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT--HSDGKKLAYAW----G  184 (250)
Q Consensus       111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~----~  184 (250)
                       +....+..+|++++|+|.++....+....| ..+..    .++|+++|.||+|+.+.....  .+....+.+..    +
T Consensus        75 -~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (179)
T d1wb1a4          75 -AVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN  148 (179)
T ss_dssp             -HHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred             -chhhhhhhccccccccccccccchhhhhhh-hhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCC
Confidence             011112278999999999986543332222 22222    478999999999985422111  11122222221    3


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         185 VKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       185 ~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                      .+++++||++|+|++++++.++..+.+
T Consensus       149 ~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         149 SSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            579999999999999999999987765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.2e-17  Score=133.56  Aligned_cols=106  Identities=9%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcccc-ccccccccCcee----------EEEEEeCCCCcc---ccCCCccccccccccccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF----------FIVYSDTNHTQR---CLTPMPFCSQVENFVQTY  118 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~----------~i~i~Dt~g~~~---~~~~~~~~~~~~~~~~~~  118 (250)
                      +|+|+|++|||||||++ +|.++. ....++.+.+..          .+.+||++|+++   ..+..++.          
T Consensus         2 ~V~ivG~~~~GKTsLl~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----------   70 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFV-RLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS----------   70 (207)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGG----------
T ss_pred             EEEEECCCCCCHHHHHH-HHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhh----------
Confidence            49999999999999998 787731 112233333333          577899999862   33444555          


Q ss_pred             CCcEEEEEEeCCCHHhH-HHHHHHHHHHHhh--hCCCCCcEEEEeeCCCccCCC
Q psy5810         119 HPDVFVIVYSVIERKTF-KKAEDMLKTLWDS--KYIGEKAVILVANKADLERRR  169 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~~~  169 (250)
                      .++++++|+|+++..++ ....+|+..+...  ....++|++||+||+|+...+
T Consensus        71 ~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          71 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             hccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            79999999999997764 5555555544322  223568999999999997543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=9e-17  Score=127.28  Aligned_cols=151  Identities=11%  Similarity=-0.034  Sum_probs=86.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc--cccccccCcee--------EEEEEeCCCCccccCCCc-----cccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE--NFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP-----FCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~--~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~-----~~~~~~~~~~  116 (250)
                      .+|+|+|.+|||||||+| ++++...  ......+.+..        .+.+.|+.|-........     ..........
T Consensus        24 ~~I~lvG~~n~GKSTLin-~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (195)
T d1svia_          24 PEIALAGRSNVGKSSFIN-SLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT  102 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHH-HHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence            369999999999999999 8876421  11111111111        233456555321111110     0000111112


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH----hCCeEEEEec
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA----WGVKFVETSV  192 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~evSa  192 (250)
                      ...+++++++.|.+++..-. ..++++.+..    .++|+++|+||+|+.+...+. +....+.+.    .+.+++++||
T Consensus       103 ~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~SA  176 (195)
T d1svia_         103 REELKAVVQIVDLRHAPSND-DVQMYEFLKY----YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFSS  176 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECCT
T ss_pred             ccchhhhhhhhhcccccccc-cccccccccc----ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEeC
Confidence            23689999999998753321 1234444433    468999999999985433321 222223232    3457999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy5810         193 GLVYKTDELLVGIARQA  209 (250)
Q Consensus       193 ~~~~~I~~lf~~l~~~i  209 (250)
                      ++|.|+++++++|.+.+
T Consensus       177 ~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         177 ETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.1e-16  Score=120.77  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccccCCC---ccccccccccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRCLTPM---PFCSQVENFVQ  116 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~---~~~~~~~~~~~  116 (250)
                      -.|+|+|.+|||||||+| ++++....    ...+....+.        .+..||++|........   ........  .
T Consensus         6 ~~I~iiG~~nvGKSSLin-~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   82 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLN-KLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS--S   82 (179)
T ss_dssp             EEEEEECSSSSSHHHHHH-HHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS--C
T ss_pred             cEEEEECCCCCCHHHHHH-HHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhcccc--c
Confidence            359999999999999999 88874211    1111111111        45567888753100000   00000000  0


Q ss_pred             cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCCC
Q psy5810         117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGLV  195 (250)
Q Consensus       117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~  195 (250)
                      ...+++++++.|..+....  ...+...+.+    ...|.++|.||.|....+.........+...++ .+++++||++|
T Consensus        83 ~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPD--DEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHH--HHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             hhhcceeEEEEecCccchh--HHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            0167888889887764322  2223333322    467889999999975543333344455555565 47999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy5810         196 YKTDELLVGIARQAGL  211 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~  211 (250)
                      .||+++++.+.+.+.+
T Consensus       157 ~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         157 LNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTHHHHHHHHHTTCCB
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999877644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.61  E-value=2.7e-15  Score=121.85  Aligned_cols=144  Identities=15%  Similarity=0.056  Sum_probs=86.4

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccc-----------------------------cccCceeEEEEEeCCCCccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------------------------TYHPDVFFIVYSDTNHTQRCLTP  104 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------------------------~~~~~~~~i~i~Dt~g~~~~~~~  104 (250)
                      |+|+|.+++|||||++ ++++.......                             .+......+.++||||.......
T Consensus         8 IaIiGh~d~GKSTL~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLD-HIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEECSTTSSHHHHHH-HHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEeCCCccHHHHHH-HHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            9999999999999998 67552100000                             00011126789999997522111


Q ss_pred             CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC------------
Q psy5810         105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT------------  172 (250)
Q Consensus       105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~------------  172 (250)
                      ..        .++..+|++|+|+|+.+.-.-+.. ..+..+..    .++|+|++.||+|+.......            
T Consensus        87 ~~--------~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~  153 (227)
T d1g7sa4          87 RK--------RGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ  153 (227)
T ss_dssp             BC--------SSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred             ch--------hcccccceEEEEEecccCcccchh-HHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcc
Confidence            10        112279999999999875433332 22233322    478999999999985322110            


Q ss_pred             --------HHHHHH----HHHH--------------hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810         173 --------HSDGKK----LAYA--------------WGVKFVETSVGLVYKTDELLVGIARQAGL  211 (250)
Q Consensus       173 --------~~~~~~----~~~~--------------~~~~~~evSa~~~~~I~~lf~~l~~~i~~  211 (250)
                              .....+    +...              ...+++++||++|.|++++++.+...+.+
T Consensus       154 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                    000111    1111              01368999999999999999988875543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.2e-15  Score=118.24  Aligned_cols=107  Identities=10%  Similarity=0.078  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCchhhhchhhhccccccccccccCcee---------EEEEEeCCCCccc--cCCCccccccccccccCCCc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------FIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPD  121 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad  121 (250)
                      .|+|+|++|||||||+| +|+++  .+.++......         .+.+|||+|+++.  .+..++.   ..   +..++
T Consensus         5 ~V~lvG~~n~GKTSLln-~l~~~--~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~---~~~~~   75 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLT-LLTTD--SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK---TR---AKFVK   75 (209)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHHS--SCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHH---HH---GGGEE
T ss_pred             EEEEECCCCCCHHHHHH-HHhCC--CCCCeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHH---HH---hhhcc
Confidence            59999999999999999 88873  33333222111         6789999998632  1122221   00   11468


Q ss_pred             EEEEEEeCCC-HHhHHHHHHHHHHHH---hhhCCCCCcEEEEeeCCCccCC
Q psy5810         122 VFVIVYSVIE-RKTFKKAEDMLKTLW---DSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus       122 ~iilV~D~~~-~~Sf~~~~~~~~~i~---~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      .+++++|..+ ..+++.+..|+..+.   +.....++|+++|+||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888664 667777777765442   3345568999999999998653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.50  E-value=3.1e-14  Score=112.68  Aligned_cols=148  Identities=17%  Similarity=0.126  Sum_probs=87.3

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccc-c----ccc--ccc---------------------------C---ceeEEEE
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQ--TYH---------------------------P---DVFFIVY   92 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~--~~~---------------------------~---~~~~i~i   92 (250)
                      ..++|+++|..++|||||++ ++++... .    ...  +..                           .   ....+.+
T Consensus         4 ~~inIaiiGhvd~GKSTL~~-~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTK-ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHH-HHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHH-HHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            35679999999999999999 7765200 0    000  000                           0   0014678


Q ss_pred             EeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-
Q psy5810          93 SDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-  171 (250)
Q Consensus        93 ~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-  171 (250)
                      +||||.+......     ..   .+..+|++++|.|..+...-....+-+..+...   ...+++++.||+|+.+.... 
T Consensus        83 iDtPGh~~f~~~~-----~~---~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~  151 (195)
T d1kk1a3          83 IDAPGHEALMTTM-----LA---GASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKAL  151 (195)
T ss_dssp             EECSSHHHHHHHH-----HH---CGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHH
T ss_pred             eccchhhhhhHHh-----hc---ccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHH
Confidence            8999975221111     00   111689999999998753222222222222221   23458889999998542211 


Q ss_pred             -CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810         172 -THSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQA  209 (250)
Q Consensus       172 -~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i  209 (250)
                       ...+..++....   .++++++||++|+||++|++.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         152 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence             122233333333   35799999999999999998887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.3e-13  Score=107.14  Aligned_cols=155  Identities=10%  Similarity=-0.009  Sum_probs=77.8

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCceeE------EEE--EeCCCCccccCCCccc--ccccc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVFF------IVY--SDTNHTQRCLTPMPFC--SQVEN  113 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~~------i~i--~Dt~g~~~~~~~~~~~--~~~~~  113 (250)
                      ..+.++|+++|.+|||||||+| ++.+......    ++.......      ...  .++.+...........  .....
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALN-TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHT-TTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHH-HHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            3456779999999999999998 7877421111    111111110      111  1111111111111000  00000


Q ss_pred             cc-ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHHHh--CCeEE
Q psy5810         114 FV-QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAYAW--GVKFV  188 (250)
Q Consensus       114 ~~-~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~--~~~~~  188 (250)
                      .. .....+.++.+.|......... ..++..+..    ...++++++||.|+......  ..++..+....+  ..+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhhheeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            00 0113455666666655433322 334444433    46789999999997542111  111222222223  24689


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~  208 (250)
                      ++||++|.||+++++.|.+.
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.43  E-value=1.6e-13  Score=109.44  Aligned_cols=149  Identities=17%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccccc-----ccc--c--cc----------------------------C-----ce
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN-----FVQ--T--YH----------------------------P-----DV   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-----~~~--~--~~----------------------------~-----~~   87 (250)
                      .+++|+++|.-++|||||++ ++++....     ...  +  .+                            .     ..
T Consensus         7 p~ini~iiGhVd~GKSTL~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQ-AITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHH-HHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCeEEEEEEccCCcHHHHHH-HHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            34679999999999999999 77642000     000  0  00                            0     00


Q ss_pred             eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ..+.+.||+|.......+        ...+..+|++|+|.|..+.-.-...++-+..+...   .-.|+|++.||+|+.+
T Consensus        86 r~~~iiD~PGH~df~~~~--------~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~  154 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATM--------LSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVS  154 (205)
T ss_dssp             EEEEEEECSCHHHHHHHH--------HHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSC
T ss_pred             EEEEEeccchHHHHHhhh--------hcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCcc
Confidence            146778888865211111        11112689999999997752111222222222221   2348899999999864


Q ss_pred             CCccC--HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810         168 RRQVT--HSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       168 ~~~v~--~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      .....  ..+...+....   +++++++||++|.||+++++.+...+.
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         155 KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            22111  11122222222   367999999999999999998876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.30  E-value=1.5e-12  Score=103.04  Aligned_cols=145  Identities=15%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc----------------cccccccccCcee-----------EEEEEeCCCCccccC
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ----------------VENFVQTYHPDVF-----------FIVYSDTNHTQRCLT  103 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~----------------~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~  103 (250)
                      +++|+++|..++|||||++ +++..                ...-....|.|+.           .+.+.||+|......
T Consensus         3 ~ini~iiGHvd~GKSTL~~-~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTA-AITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHH-HHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHH-HHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4789999999999999998 66531                0001111122221           577899999753211


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc---CHHHHHHHH
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV---THSDGKKLA  180 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v---~~~~~~~~~  180 (250)
                      .+        ...+..+|++++|.|..+...-+. ++.+..+...   .-.|+|++.||.|+......   -..+...+.
T Consensus        82 ~~--------~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l  149 (196)
T d1d2ea3          82 NM--------ITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (196)
T ss_dssp             HH--------HHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HH--------HHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence            11        011226999999999988533222 2222223221   34579999999998542221   112344444


Q ss_pred             HHhC-----CeEEEEecCCC----------CCHHHHHHHHHHH
Q psy5810         181 YAWG-----VKFVETSVGLV----------YKTDELLVGIARQ  208 (250)
Q Consensus       181 ~~~~-----~~~~evSa~~~----------~~I~~lf~~l~~~  208 (250)
                      ..++     ++++++||++|          +++.++++.+...
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            4444     56999999998          5788887776554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.4e-11  Score=106.03  Aligned_cols=151  Identities=15%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcccc----ccc-----cccccCce------eEEEEEeCCCCccccCC-Ccccccccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQV----ENF-----VQTYHPDV------FFIVYSDTNHTQRCLTP-MPFCSQVEN  113 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~----~~~-----~~~~~~~~------~~i~i~Dt~g~~~~~~~-~~~~~~~~~  113 (250)
                      ..++|+|+|.+|||||||+| .+.+..    ...     ..|..+..      ..+.+|||||-...... ..|.    .
T Consensus        55 ~~l~Iai~G~~n~GKSSLiN-aL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~----~  129 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFIN-TLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYL----E  129 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHH-HHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHH----H
T ss_pred             CCcEEEEECCCCCCHHHHHH-HHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHH----H
Confidence            35789999999999999999 787621    100     11111111      14789999996421111 1010    1


Q ss_pred             ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-------CCCccCHHHH----H----H
Q psy5810         114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-------RRRQVTHSDG----K----K  178 (250)
Q Consensus       114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-------~~~~v~~~~~----~----~  178 (250)
                      ......+|.++++.|..-.+.  + ..+++.+.+    .+.|+++|.||+|..       .......+..    +    .
T Consensus       130 ~~~~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         130 KMKFYEYDFFIIISATRFKKN--D-IDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             HTTGGGCSEEEEEESSCCCHH--H-HHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred             HhhhhcceEEEEecCCCCCHH--H-HHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHH
Confidence            112226898888877543322  2 233344433    378999999999962       1111222221    1    1


Q ss_pred             HHHHhCC---eEEEEecCCC--CCHHHHHHHHHHHHHhh
Q psy5810         179 LAYAWGV---KFVETSVGLV--YKTDELLVGIARQAGLN  212 (250)
Q Consensus       179 ~~~~~~~---~~~evSa~~~--~~I~~lf~~l~~~i~~~  212 (250)
                      ..+..+.   +++.+|+.+.  .++.++.+.+.+.+...
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            1222333   4788887653  58999988888776543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.17  E-value=7.2e-11  Score=94.88  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=82.0

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcccccccc---------------------------------ccccCce-------
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---------------------------------QTYHPDV-------   87 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---------------------------------~~~~~~~-------   87 (250)
                      +-..++|+++|..++|||||+. +++.......                                 ..-+.++       
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIG-RLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHH-HHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHH-HHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            4467889999999999999998 6642111100                                 0001111       


Q ss_pred             ----eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeC
Q psy5810          88 ----FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANK  162 (250)
Q Consensus        88 ----~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK  162 (250)
                          ..+.+.|+||.+.....+.     ..   +..+|++|+|.|..+...-+....|.  +...   .+++ +|++.||
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~-----~g---~~~aD~ailVvda~~G~~~Qt~e~~~--~~~~---~gv~~iiv~vNK  151 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMA-----TG---ASTCDLAIILVDARYGVQTQTRRHSY--IASL---LGIKHIVVAINK  151 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHH-----HH---HTTCSEEEEEEETTTCSCHHHHHHHH--HHHH---TTCCEEEEEEEC
T ss_pred             eccceEEEEEeccchhhhhhhhc-----cc---cccCceEEEEeccccCcccchHHHHH--HHHH---cCCCEEEEEEEc
Confidence                1577899999863322211     11   11689999999998743222222221  2222   3555 8889999


Q ss_pred             CCccCCCcc----CHHHHHHHHHHhCC-----eEEEEecCCCCCHHH
Q psy5810         163 ADLERRRQV----THSDGKKLAYAWGV-----KFVETSVGLVYKTDE  200 (250)
Q Consensus       163 ~Dl~~~~~v----~~~~~~~~~~~~~~-----~~~evSa~~~~~I~~  200 (250)
                      .|+.+...-    ...+...+.+..++     +|+++||++|.||.+
T Consensus       152 ~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         152 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            998652221    11233445555543     589999999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=1.5e-11  Score=97.75  Aligned_cols=131  Identities=14%  Similarity=0.115  Sum_probs=77.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccc------ccccc-----------ccccCcee-----------EEEEEeCCCCcccc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQ------VENFV-----------QTYHPDVF-----------FIVYSDTNHTQRCL  102 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~------~~~~~-----------~~~~~~~~-----------~i~i~Dt~g~~~~~  102 (250)
                      +++|+++|..++|||||++ +++..      ...+.           ...|.++.           ++.+.||||.....
T Consensus         3 ~ini~iiGhvd~GKSTL~~-~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTA-ALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEeCCCCcHHHHHH-HHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            5789999999999999998 66421      00000           00022221           67889999976322


Q ss_pred             CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc-C--HHHHHH
Q psy5810         103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV-T--HSDGKK  178 (250)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v-~--~~~~~~  178 (250)
                      .     .+   ..++..+|++|+|+|..+....+..+.|.. +..    .++| ++++.||+|+.+.... +  .++...
T Consensus        82 ~-----~~---~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~  148 (204)
T d2c78a3          82 K-----NM---ITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  148 (204)
T ss_dssp             H-----HH---HHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             H-----HH---HHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHH
Confidence            1     11   112237999999999988765554443322 222    3666 7778999998442211 1  123334


Q ss_pred             HHHHhC-----CeEEEEecCCC
Q psy5810         179 LAYAWG-----VKFVETSVGLV  195 (250)
Q Consensus       179 ~~~~~~-----~~~~evSa~~~  195 (250)
                      +....+     ++++..||..+
T Consensus       149 ~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         149 LLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHhcCCCcccceeeeeechhh
Confidence            444433     45788888643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.10  E-value=1.3e-10  Score=95.39  Aligned_cols=122  Identities=10%  Similarity=-0.035  Sum_probs=65.7

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhccccccc-cccccCc----ee-------EEEEEeCCCCcccc-CCCcccccccccc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPD----VF-------FIVYSDTNHTQRCL-TPMPFCSQVENFV  115 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~----~~-------~i~i~Dt~g~~~~~-~~~~~~~~~~~~~  115 (250)
                      ...++|+++|.+|||||||+| .+++..... ....+.|    ..       .+.++||||-...- ...........+.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN-~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVN-SIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHH-HHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            356889999999999999999 777641111 1111111    11       67899999965211 1111111111112


Q ss_pred             ccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccC
Q psy5810         116 QTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYI-GEKAVILVANKADLERRRQVT  172 (250)
Q Consensus       116 ~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~  172 (250)
                      .....+++++|.+++... +-++ ...+..+....+. --.++++|.||+|.......+
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            222678899998876531 1111 1222223222211 124789999999985433333

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.04  E-value=3e-10  Score=96.06  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH----------hCCeEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA----------WGVKFV  188 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~  188 (250)
                      -+|.+++|......+..+.+..   .+      -+++=++|.||+|+.+...........+...          +..+++
T Consensus       164 ~~D~~v~v~~p~~GD~iQ~~k~---gi------lE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~  234 (323)
T d2qm8a1         164 LTDFFLVLMLPGAGDELQGIKK---GI------FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV  234 (323)
T ss_dssp             TSSEEEEEECSCC------CCT---TH------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred             ccceEEEEeeccchhhhhhhhh---hH------hhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceE
Confidence            5899999998887654443221   11      1234578889999765322222222222221          335699


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy5810         189 ETSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       189 evSa~~~~~I~~lf~~l~~~i~  210 (250)
                      .+||++|.|++++++.+.+...
T Consensus       235 ~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         235 TISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHH
Confidence            9999999999999999976544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.2e-10  Score=98.75  Aligned_cols=83  Identities=17%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHH-------HhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAY-------AWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~-------~~~~~~~e  189 (250)
                      .+|.+++|.+....+..+.+..-+-++         +=++|.||+|++.....  ...+......       .+..+++.
T Consensus       167 ~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~  237 (327)
T d2p67a1         167 MVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT  237 (327)
T ss_dssp             TCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred             ccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEE
Confidence            589999998765554433333222222         33677899998642111  1111111111       22346999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q psy5810         190 TSVGLVYKTDELLVGIARQAG  210 (250)
Q Consensus       190 vSa~~~~~I~~lf~~l~~~i~  210 (250)
                      |||++|.||+++++.+.+...
T Consensus       238 ~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         238 CSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHHHHHHHH
Confidence            999999999999999986443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.99  E-value=6.8e-10  Score=89.25  Aligned_cols=114  Identities=11%  Similarity=-0.052  Sum_probs=62.5

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCC---CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVI---ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~---~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      .+.+.|++|+..........   .........+.++++.|..   ++..+.........+...   -..|.++|.||+|+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~---~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFG---VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHH---HHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGG
T ss_pred             ceeeeccccchhHHHHHHHH---HHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccc
Confidence            46678999875221111000   0000011467889999964   455544333222222211   36899999999998


Q ss_pred             cCCCccCH-----------------------HHHH---HHHHH--hCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810         166 ERRRQVTH-----------------------SDGK---KLAYA--WGVKFVETSVGLVYKTDELLVGIARQ  208 (250)
Q Consensus       166 ~~~~~v~~-----------------------~~~~---~~~~~--~~~~~~evSa~~~~~I~~lf~~l~~~  208 (250)
                      ........                       ....   ...++  ..++++++||++|+|+++++..|.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         170 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            53211100                       0000   01111  24679999999999999999887764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=4e-10  Score=91.77  Aligned_cols=141  Identities=13%  Similarity=0.059  Sum_probs=74.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccccccc-------------------------------cccccCce-----------
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF-------------------------------VQTYHPDV-----------   87 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-------------------------------~~~~~~~~-----------   87 (250)
                      .++.|+++|.-++|||||+. +++...+..                               ....+.++           
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGG-NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHH-HHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CceEEEEEeeCCCCHHHHHH-HHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            45679999999999999997 663211100                               00111111           


Q ss_pred             eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hHH---HHHHHHHHHHhhhCCCCCc-EEEEe
Q psy5810          88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFK---KAEDMLKTLWDSKYIGEKA-VILVA  160 (250)
Q Consensus        88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~---~~~~~~~~i~~~~~~~~~p-iilv~  160 (250)
                      ..+.+.||||.......+.-        .+..+|++++|.|..+..   ++.   ...+-+..+ ..   .++| ++++.
T Consensus       102 ~~i~~iDtPGH~df~~~~~~--------g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv~i  169 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMIN--------GASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVI  169 (245)
T ss_dssp             EEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEE
T ss_pred             ceeeeecccccccchhhhhh--------hhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEEEE
Confidence            15778999997632222211        111689999999998742   111   112222212 11   2454 88889


Q ss_pred             eCCCccCCC--ccCHH----HHHHHHHHh-------CCeEEEEecCCCCCHHHHHH
Q psy5810         161 NKADLERRR--QVTHS----DGKKLAYAW-------GVKFVETSVGLVYKTDELLV  203 (250)
Q Consensus       161 nK~Dl~~~~--~v~~~----~~~~~~~~~-------~~~~~evSa~~~~~I~~lf~  203 (250)
                      ||.|+....  +-..+    +...+.++.       .++++++||++|+||.++++
T Consensus       170 NKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         170 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             EcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            999985321  11111    122222222       24799999999999976543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=5.2e-09  Score=86.25  Aligned_cols=100  Identities=10%  Similarity=-0.044  Sum_probs=63.7

Q ss_pred             EEEEEcCCCCchhhhchhhhccc---cccc--------cc-------cccCcee-----------EEEEEeCCCCccccC
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ---VENF--------VQ-------TYHPDVF-----------FIVYSDTNHTQRCLT  103 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~---~~~~--------~~-------~~~~~~~-----------~i~i~Dt~g~~~~~~  103 (250)
                      .|+|+|..++|||||+. +++..   ....        ..       .-+.++.           ++.+.||||......
T Consensus         8 ni~i~gh~~~GKTtL~e-~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTE-RILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHH-HHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             EEEEEeCCCCCHHHHHH-HHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            39999999999999998 55432   1110        00       0011111           778999999764333


Q ss_pred             CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810         104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      ...     .   +++-+|++|+|+|..+.-.-...+-|-. ..    ..++|.+++.||.|.+
T Consensus        87 e~~-----~---~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~----~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          87 EVE-----R---SMRVLDGAIVVFDSSQGVEPQSETVWRQ-AE----KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             THH-----H---HHHHCCEEEEEEETTTSSCHHHHHHHHH-HH----TTTCCEEEEEECTTST
T ss_pred             HHH-----H---HHHhhhheEEeccccCCcchhHHHHHHH-HH----HcCCCEEEEEeccccc
Confidence            221     1   1115899999999998755544444422 22    2589999999999984

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=1.7e-09  Score=86.74  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcccccc-------------------------------ccccccCce-----------e
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN-------------------------------FVQTYHPDV-----------F   88 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~-------------------------------~~~~~~~~~-----------~   88 (250)
                      ++.|+++|.-++|||||+. +++...+.                               .....+.++           .
T Consensus         3 ~iNi~viGHVd~GKTTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVG-RLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHH-HHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             ccEEEEEecCCCCHHHHHH-HHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            4679999999999999997 55321000                               000111111           1


Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hH---HHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TF---KKAEDMLKTLWDSKYIGEKAVILVANK  162 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf---~~~~~~~~~i~~~~~~~~~piilv~nK  162 (250)
                      .+.+.||||.......+.     .   .++-+|++|+|.|..+..   ++   ....+-+. +...  ..-.++|++.||
T Consensus        82 ~i~iiDtPGH~df~~~~~-----~---g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~--~~~~~iIv~iNK  150 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMI-----T---GASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKT--MGLDQLIVAVNK  150 (224)
T ss_dssp             EEEECCCSSSTTHHHHHH-----H---TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHH--TTCTTCEEEEEC
T ss_pred             eeEEeeCCCcHHHHHHHH-----H---HHHhhceEEEEEecccCcccccccccchhHHHHH-HHHH--hCCCceEEEEEc
Confidence            677899999862221111     0   111589999999998842   11   11111111 1111  123468889999


Q ss_pred             CCccCCC--ccCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810         163 ADLERRR--QVTH----SDGKKLAYAWG-----VKFVETSVGLVYKTDE  200 (250)
Q Consensus       163 ~Dl~~~~--~v~~----~~~~~~~~~~~-----~~~~evSa~~~~~I~~  200 (250)
                      .|+....  .-..    .+...+...++     ++++++||..|.||.+
T Consensus       151 ~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         151 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            9985311  1111    22333444433     4689999999998743

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=7.2e-09  Score=83.81  Aligned_cols=136  Identities=14%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhccccccc-------------------------------cccccCce-----------e
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCSQVENF-------------------------------VQTYHPDV-----------F   88 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-------------------------------~~~~~~~~-----------~   88 (250)
                      ++.|+++|.-++|||||+. +++...+..                               ...-|.++           .
T Consensus         6 ~iNi~iiGHvD~GKsTl~~-~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHH-HHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ccEEEEEeCCCCCHHHHHH-HHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            4789999999999999998 553210000                               01112222           1


Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHh---H----HHHHHHHHHHHhhhCCCCCc-EEEEe
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKT---F----KKAEDMLKTLWDSKYIGEKA-VILVA  160 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~S---f----~~~~~~~~~i~~~~~~~~~p-iilv~  160 (250)
                      ++.+.||||.......+     ..   .++.+|++|+|.|.....-   |    +....|+. . ..   -++| +|++.
T Consensus        85 ~i~iiDtPGH~df~~~~-----~~---g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~-~-~~---~gv~~iiv~i  151 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNM-----IT---GTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-A-FT---LGVRQLIVAV  151 (239)
T ss_dssp             EEEEEECCCCTTHHHHH-----HH---SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-H-HH---TTCCEEEEEE
T ss_pred             EEEEEECCCcHHHHHHH-----HH---HHHHhCEEEEEEECCCCccccccCchHhHHHHHHH-H-HH---cCCCeEEEEE
Confidence            68899999986322111     11   1126899999999986421   1    12222211 1 11   3555 88899


Q ss_pred             eCCCccCCCccC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810         161 NKADLERRRQVT----HSDGKKLAYAWG-----VKFVETSVGLVYKTDE  200 (250)
Q Consensus       161 nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~evSa~~~~~I~~  200 (250)
                      ||.|+.+...-.    ..+...+....+     ++++.+||.+|.|+-+
T Consensus       152 NKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         152 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            999986422111    123444555554     4589999999988643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.81  E-value=8.8e-09  Score=84.55  Aligned_cols=98  Identities=10%  Similarity=-0.026  Sum_probs=61.7

Q ss_pred             EEEEcCCCCchhhhchhhhccccccc------c----------------ccccCce-------eEEEEEeCCCCccccCC
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENF------V----------------QTYHPDV-------FFIVYSDTNHTQRCLTP  104 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~------~----------------~~~~~~~-------~~i~i~Dt~g~~~~~~~  104 (250)
                      |+|+|..++|||||+. +++......      .                .++....       .++.++||||.......
T Consensus         5 v~iiGh~~~GKTtL~e-~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTE-ALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEESTTSSHHHHHH-HHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEcCCCCcHHHHHH-HHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            9999999999999998 553210100      0                0111111       16789999997532211


Q ss_pred             CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810         105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL  165 (250)
Q Consensus       105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  165 (250)
                      .        ..+++-+|++|+|.|..+.-.-...+.|.. ..+    .++|.+++.||.|.
T Consensus        84 ~--------~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~----~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          84 I--------RGALEAADAALVAVSAEAGVQVGTERAWTV-AER----LGLPRMVVVTKLDK  131 (267)
T ss_dssp             H--------HHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECGGG
T ss_pred             h--------hhhhcccCceEEEeeccCCccchhHHHHHh-hhh----cccccccccccccc
Confidence            1        111226899999999998655554444432 322    47899999999996

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.70  E-value=6e-08  Score=79.94  Aligned_cols=70  Identities=11%  Similarity=-0.037  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee------------------------EEEEEeCCCCc----
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF------------------------FIVYSDTNHTQ----   99 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~------------------------~i~i~Dt~g~~----   99 (250)
                      +||.|||.||||||||++ ++++....    .-.|+.|.++                        .+.+.|.||--    
T Consensus         3 ~~~GivG~Pn~GKSTlf~-~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFN-ALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             ceEEEECCCCCCHHHHHH-HHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999998 88865222    1234444443                        36788999952    


Q ss_pred             --cccCCCccccccccccccCCCcEEEEEEeC
Q psy5810         100 --RCLTPMPFCSQVENFVQTYHPDVFVIVYSV  129 (250)
Q Consensus       100 --~~~~~~~~~~~~~~~~~~~~ad~iilV~D~  129 (250)
                        +.++..+++ +      ++++|+++.|.|.
T Consensus        82 ~g~Glg~~FL~-~------ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLA-N------IRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHH-H------HHTCSEEEEEEEC
T ss_pred             cCCCccHHHHH-H------HHhccceEEEeec
Confidence              456666544 1      2269999999975

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.43  E-value=1.5e-07  Score=78.80  Aligned_cols=72  Identities=11%  Similarity=-0.027  Sum_probs=41.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhcccccc---cc-ccccCce-------------------------------eEEEEEeCC
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVEN---FV-QTYHPDV-------------------------------FFIVYSDTN   96 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~---~~-~~~~~~~-------------------------------~~i~i~Dt~   96 (250)
                      +||+++|.||||||||+| .+++....   |. .|+.|.+                               ..++++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn-~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFS-AATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHH-HHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHH-HHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            579999999999999999 88775222   11 1222221                               258899999


Q ss_pred             CCcc------ccCCCccccccccccccCCCcEEEEEEeCCC
Q psy5810          97 HTQR------CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE  131 (250)
Q Consensus        97 g~~~------~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~  131 (250)
                      |-..      .+...++.       .++++|++++|.|..+
T Consensus        80 Gli~ga~~g~~~~~~~l~-------~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAHEGRGLGNKFLD-------DLRMASALIHVVDATG  113 (319)
T ss_dssp             ---------------CCC-------SSTTCSEEEEEEETTC
T ss_pred             CcccchhcccchHHHHHH-------hhccceEEEEEecccc
Confidence            9532      12222211       2237999999999753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.3e-07  Score=79.95  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=42.6

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE  166 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  166 (250)
                      .+.+.||||.......        ...+++-+|++++|+|..+.-..+...-|.. ..+    .++|++++.||+|..
T Consensus        97 ~inliDtPGh~dF~~e--------v~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSE--------VTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEECCCCCCSSCHH--------HHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred             EEEEEcCCCcHHHHHH--------HHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH----cCCCeEEEEECcccc
Confidence            3678999997522111        1111126899999999998766555444433 222    578999999999963

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=3e-06  Score=69.84  Aligned_cols=44  Identities=18%  Similarity=0.057  Sum_probs=30.0

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810         121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR  168 (250)
Q Consensus       121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  168 (250)
                      +++++|.+.+.+.+-.....|.+.+    .....++++|.||+|....
T Consensus       164 ~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         164 CLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             EEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCT
T ss_pred             ceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEeccccccc
Confidence            4566777777665555556666665    3345689999999998553

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.23  E-value=6.5e-07  Score=74.21  Aligned_cols=72  Identities=14%  Similarity=0.041  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhccccc-c----ccccccCcee------------------------EEEEEeCCCCc---
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQTYHPDVF------------------------FIVYSDTNHTQ---   99 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~~~~~~~~------------------------~i~i~Dt~g~~---   99 (250)
                      +||.|||.||||||||+| .+++... .    .-.|+.|..+                        .+++.|.+|-.   
T Consensus        11 ~kiGivG~Pn~GKSTlfn-alT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFR-AITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CEEEEEECSSSSHHHHHH-HHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             cEEEEECCCCCCHHHHHH-HHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            679999999999999999 8875411 1    1234444443                        46778999854   


Q ss_pred             ---cccCCCccccccccccccCCCcEEEEEEeCCC
Q psy5810         100 ---RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE  131 (250)
Q Consensus       100 ---~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~  131 (250)
                         +.+...++.       .++.+|+++.|.|..+
T Consensus        90 ~~g~GLGn~fL~-------~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLS-------HVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHH-------HHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHH-------HhhccceeEEEEeccC
Confidence               222323322       2337999999998755

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.09  E-value=1.7e-06  Score=71.76  Aligned_cols=25  Identities=4%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhccc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      ...+|+|+|+.++||||||| .+++.
T Consensus        23 ~lP~ivVvG~~ssGKSSliN-aLlG~   47 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLE-NIVGR   47 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHH-HHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHH-HHhCC
Confidence            33469999999999999999 77763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=6.9e-06  Score=64.96  Aligned_cols=107  Identities=18%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             CCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH--hCCeEEEEecCC
Q psy5810         118 YHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA--WGVKFVETSVGL  194 (250)
Q Consensus       118 ~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~evSa~~  194 (250)
                      ++.|.+++|+++.+| -+...+.+|+-....    .++|.++|.||+||.+...  .+....+...  .+.+.+.+||++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecccc
Confidence            389999999999886 466677777766543    5899999999999954211  1222333332  346789999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         195 VYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       195 ~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      +.|++++...+...      ..-.-..+...+++++|++.+.
T Consensus        83 ~~g~~~L~~~l~~k------t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          83 GMGIEELKEYLKGK------ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             CTTHHHHHHHHSSS------EEEEECSTTSSHHHHHHHHSTT
T ss_pred             chhHhhHHHHhcCC------eEEEECCCCCCHHHHHHhhcch
Confidence            99999987776321      1112233345677777777654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=2e-06  Score=70.39  Aligned_cols=50  Identities=8%  Similarity=-0.096  Sum_probs=32.0

Q ss_pred             ccEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCCc
Q psy5810          49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHTQ   99 (250)
Q Consensus        49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~~   99 (250)
                      ...++|+|+|.||||||||+| ++.+.. .......|.|..        .+.+.||||..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN-~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLIN-RLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHH-HHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhh-hhhccceEEECCcccccccceEEECCCCeEEecCCCcc
Confidence            356789999999999999999 777742 223333343332        57889999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=4.7e-06  Score=68.05  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=74.4

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH---HHhCCeEEEEecCCC
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA---YAWGVKFVETSVGLV  195 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~  195 (250)
                      .+|++++|.|..+|.+..+  ..+.++.     .+.|.|+|.||+|+.+     .+....|.   ...+...+.+|+.++
T Consensus        15 ~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~-----~~~~~~w~~~f~~~~~~~i~isa~~~   82 (273)
T d1puja_          15 LIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSINSVNG   82 (273)
T ss_dssp             GCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEECCTTTC
T ss_pred             hCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCc-----hHHHHHHHHHHHhcCCccceeecccC
Confidence            7999999999998876543  2233332     2679999999999854     23333333   444677999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhhhhhHHHHH------------hhhhhhhhhhhhccCCc
Q psy5810         196 YKTDELLVGIARQAGLNKKRNKLLAKK------------QKKMASYINNIKQFKWF  239 (250)
Q Consensus       196 ~~I~~lf~~l~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  239 (250)
                      .++.++...+.+.+.+...........            ....++.+|.+.++++.
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~  138 (273)
T d1puja_          83 QGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA  138 (273)
T ss_dssp             TTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             CCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceE
Confidence            999888887776655433322111100            04889999999998874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.69  E-value=4.2e-05  Score=59.85  Aligned_cols=98  Identities=15%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ++.+.||+|.-..............+......+-+++|.|.+... ..+.+..   ... .   .++ --+|.||.|...
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~-~---~~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQ-A---SKI-GTIIITKMDGTA  167 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHH-H---CTT-EEEEEECTTSCS
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh---hhc-c---cCc-ceEEEecccCCC
Confidence            577899999521110000000111111111467888999887643 3333222   221 1   122 235679999643


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE  200 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~  200 (250)
                          ..-.+...+...++|+..++  +|++|++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                34566778888999977776  5777644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=8.7e-06  Score=64.60  Aligned_cols=108  Identities=16%  Similarity=0.102  Sum_probs=71.8

Q ss_pred             CCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH---HHHHHhCCeEEEEecC
Q psy5810         118 YHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK---KLAYAWGVKFVETSVG  193 (250)
Q Consensus       118 ~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~---~~~~~~~~~~~evSa~  193 (250)
                      ++.|.+++|.++.+| -++..+.+++-...    ..+++.+||.||+||.++.. ..+...   +.....|++++.+||+
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeecC
Confidence            389999999999876 46677777766553    36899999999999965321 122222   2345568999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810         194 LVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF  236 (250)
Q Consensus       194 ~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (250)
                      ++.|++++..++-.      +..-.-..+...+++++|++.+.
T Consensus        84 ~~~gl~~L~~~l~~------~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          84 DQDSLADIIPHFQD------KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             HHTTCTTTGGGGTT------SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ChhHHHHHHHhhcc------ceEEEECCCCccHHHHHHhhccH
Confidence            99999887766521      11112223335666777776654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=1.7e-05  Score=62.66  Aligned_cols=21  Identities=5%  Similarity=-0.053  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .+++|.+|||||||+| ++...
T Consensus        98 ~~~~G~SGVGKSTLiN-~L~~~  118 (225)
T d1u0la2          98 STMAGLSGVGKSSLLN-AINPG  118 (225)
T ss_dssp             EEEECSTTSSHHHHHH-HHSTT
T ss_pred             EEEECCCCCCHHHHHH-hhcch
Confidence            7999999999999999 77663

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00019  Score=55.90  Aligned_cols=67  Identities=9%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             CcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810         120 PDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT  198 (250)
Q Consensus       120 ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I  198 (250)
                      .+-.++|.|.+. ++....+......+       + +--++.+|.|....    .-.+...+...++|+..++  +|++|
T Consensus       128 p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v  193 (211)
T d2qy9a2         128 PHEVMLTIDASTGQNAVSQAKLFHEAV-------G-LTGITLTKLDGTAK----GGVIFSVADQFGIPIRYIG--VGERI  193 (211)
T ss_dssp             CSEEEEEEEGGGTHHHHHHHHHHHHHS-------C-CCEEEEECCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred             cceeeeehhcccCcchHHHHhhhhhcc-------C-CceEEEeecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCc
Confidence            567888988765 34444443333322       2 33456699996431    2345667788899977776  67776


Q ss_pred             HH
Q psy5810         199 DE  200 (250)
Q Consensus       199 ~~  200 (250)
                      ++
T Consensus       194 ~D  195 (211)
T d2qy9a2         194 ED  195 (211)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.45  E-value=0.00014  Score=56.53  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=40.4

Q ss_pred             CCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810         119 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK  197 (250)
Q Consensus       119 ~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  197 (250)
                      ..+-.+||.|.+.. +....+......+       + +--++.+|.|....    .-.+...+...++|+..++  +|++
T Consensus       124 ~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlDet~~----~G~~l~~~~~~~~Pi~~i~--~Gq~  189 (207)
T d1okkd2         124 EPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVTKLDGTAK----GGVLIPIVRTLKVPIKFVG--VGEG  189 (207)
T ss_dssp             CCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEECTTSSCC----CTTHHHHHHHHCCCEEEEE--CSSS
T ss_pred             CCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEeccCCCCC----ccHHHHHHHHHCCCEEEEe--CCCC
Confidence            35677888887664 4555544444433       1 22446799996432    2235567788899976666  3555


Q ss_pred             HHH
Q psy5810         198 TDE  200 (250)
Q Consensus       198 I~~  200 (250)
                      .++
T Consensus       190 p~D  192 (207)
T d1okkd2         190 PDD  192 (207)
T ss_dssp             TTC
T ss_pred             hHh
Confidence            443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.27  E-value=0.00031  Score=54.54  Aligned_cols=89  Identities=13%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810          89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER  167 (250)
Q Consensus        89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  167 (250)
                      ++.++||+|.-......  ...........+.+-+++|.|.+... ..+.+....+.+       + +-=++.+|.|...
T Consensus        94 d~vlIDTaGr~~~d~~~--~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-------~-~~~~I~TKlDe~~  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPL--MGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-------G-VTGLVLTKLDGDA  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHH--HHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-------C-CCEEEEECGGGCS
T ss_pred             cceeecccccchhhhhh--HHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-------C-CCeeEEeecCccc
Confidence            56789999963111000  00111111112578889999987653 333333222222       1 1235679999643


Q ss_pred             CCccCHHHHHHHHHHhCCeEEEEe
Q psy5810         168 RRQVTHSDGKKLAYAWGVKFVETS  191 (250)
Q Consensus       168 ~~~v~~~~~~~~~~~~~~~~~evS  191 (250)
                          ..-.+..++...+.|+..++
T Consensus       164 ----~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 ----RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ----SCHHHHHHHHHHCCCEEEEC
T ss_pred             ----cchHHHHHHHHHCCCEEEEe
Confidence                23456677788899976664

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.10  E-value=6.4e-05  Score=56.26  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +||+|+|++|+|||||++ .+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~-~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVK-KIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCcHHHHHHH-HHHh
Confidence            589999999999999996 6665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.08  E-value=4.8e-05  Score=60.19  Aligned_cols=21  Identities=5%  Similarity=0.142  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchhhhchhhhccc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .+++|.+|||||||+| ++...
T Consensus       100 ~vl~G~SGVGKSSLiN-~L~~~  120 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLN-AISPE  120 (231)
T ss_dssp             EEEEESHHHHHHHHHH-HHCC-
T ss_pred             EEEECCCCccHHHHHH-hhccH
Confidence            7899999999999999 77764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.00034  Score=51.96  Aligned_cols=26  Identities=4%  Similarity=0.131  Sum_probs=21.1

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|-.=+|+|+|.+|||||||++ ++..
T Consensus         4 ~~~~K~I~i~G~~GsGKTTla~-~La~   29 (192)
T d1lw7a2           4 PFFAKTVAILGGESSGKSVLVN-KLAA   29 (192)
T ss_dssp             GGTCEEEEEECCTTSHHHHHHH-HHHH
T ss_pred             CccceEEEEECCCCCCHHHHHH-HHHH
Confidence            4444469999999999999996 7765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.57  E-value=0.00026  Score=52.23  Aligned_cols=22  Identities=9%  Similarity=0.096  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +||+|+|.+||||||+.. ++..
T Consensus         5 ~~I~i~G~pGsGKTTia~-~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGK-ELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            459999999999999996 6544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0011  Score=51.71  Aligned_cols=61  Identities=7%  Similarity=-0.033  Sum_probs=34.1

Q ss_pred             CcEEEEEEeCCCHHhH-HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEe
Q psy5810         120 PDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETS  191 (250)
Q Consensus       120 ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evS  191 (250)
                      .+++|.|.|..+.... .....+..++.       ..=++|.||+|+.++    .+..++..+..+  .++++++
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-------~AD~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVAGE----AEKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHH-------TCSEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHH-------hCCcccccccccccH----HHHHHHHHHHHhCCCeEEEee
Confidence            5778889998875422 22122223231       122466799998642    244556666664  4577654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.49  E-value=0.00038  Score=51.48  Aligned_cols=24  Identities=0%  Similarity=0.148  Sum_probs=19.9

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.++|+|.|.+||||||+.+ .+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~-~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAE-MIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHH-HHHH
Confidence            44679999999999999996 5554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0005  Score=50.53  Aligned_cols=20  Identities=5%  Similarity=0.023  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|.+|||||||++ ++..
T Consensus         5 i~itG~~GSGKTTL~~-~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLK-KLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            8899999999999998 7765

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.30  E-value=0.00059  Score=50.98  Aligned_cols=22  Identities=0%  Similarity=-0.000  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.|||||||+.. .+..
T Consensus         1 m~I~i~G~pGSGKsT~a~-~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAE-KIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            469999999999999995 5544

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.22  E-value=0.00075  Score=48.76  Aligned_cols=20  Identities=5%  Similarity=0.086  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+|||||||++ ++..
T Consensus         5 Iii~G~pGsGKTTla~-~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAR-EFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7889999999999996 6654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.22  E-value=0.00069  Score=50.89  Aligned_cols=22  Identities=0%  Similarity=-0.029  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.|||||||+.. ++..
T Consensus         1 M~I~i~G~pGSGKsT~a~-~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQAD-RIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            479999999999999996 6655

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.18  E-value=0.00052  Score=51.97  Aligned_cols=23  Identities=0%  Similarity=-0.041  Sum_probs=19.3

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++|+|+|++||||||+.. .+..
T Consensus         3 Pm~I~i~GppGsGKsT~a~-~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCE-LIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHH-HHHH
T ss_pred             CeEEEEECCCCCCHHHHHH-HHHH
Confidence            3569999999999999996 6654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.00083  Score=50.33  Aligned_cols=22  Identities=0%  Similarity=-0.003  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|.+||||||+.. ++..
T Consensus         1 m~I~i~G~pGsGKsT~a~-~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAV-KLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            479999999999999996 6554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.06  E-value=0.00097  Score=48.81  Aligned_cols=20  Identities=5%  Similarity=0.190  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||+.+ ++..
T Consensus         5 I~i~G~~GsGKTTva~-~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCK-RLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6664

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.00094  Score=49.94  Aligned_cols=22  Identities=5%  Similarity=-0.072  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +||+|+|.+||||||+.. ++..
T Consensus         1 m~I~i~G~pGSGKsT~~~-~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQ-FIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            479999999999999995 6554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.001  Score=49.96  Aligned_cols=23  Identities=0%  Similarity=0.011  Sum_probs=19.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|+|.+||||||+.. .+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~-~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAP-NLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHH-HHHH
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHH
Confidence            3679999999999999996 6654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.90  E-value=0.042  Score=43.20  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=41.1

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                      -||.++++.+. +..++..+...+..+.......+.. .-+|.|+.+...    ..+..+++++.++.+++.
T Consensus       140 ~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         140 KAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLIH  206 (269)
T ss_dssp             SCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEEE
T ss_pred             ccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----ccchhhhhHhhcCCeEEE
Confidence            47888777766 5667776665555554433223333 346789988643    245567788888887653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0013  Score=50.06  Aligned_cols=21  Identities=0%  Similarity=0.118  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+++|.||||||||.+ ++..
T Consensus         4 li~l~GlpgsGKSTla~-~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISK-KLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999997 6664

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.88  E-value=0.0013  Score=50.01  Aligned_cols=24  Identities=4%  Similarity=0.009  Sum_probs=20.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +-++|+|+|.|||||||+.. .++.
T Consensus         5 r~mrIiliG~PGSGKtT~a~-~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSS-RITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHH-HHHH
T ss_pred             cceeEEEECCCCCCHHHHHH-HHHH
Confidence            44569999999999999996 6665

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.86  E-value=0.0014  Score=48.36  Aligned_cols=20  Identities=10%  Similarity=0.155  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|+|.+|||||||++ +++.
T Consensus         4 i~I~G~~gSGKTTli~-~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLME-KWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            5699999999999997 6665

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.85  E-value=0.0013  Score=49.57  Aligned_cols=22  Identities=5%  Similarity=0.012  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+++|+|||||||+.. ++..
T Consensus         4 ~riil~G~pGSGKsT~a~-~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAP-KLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            579999999999999996 6654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.85  E-value=0.0017  Score=49.09  Aligned_cols=23  Identities=4%  Similarity=-0.026  Sum_probs=19.1

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ...|+|+|++||||||+.. ++..
T Consensus         6 p~iI~i~G~pGSGKsT~a~-~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCA-NIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHH
Confidence            3458999999999999996 6655

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0014  Score=47.24  Aligned_cols=20  Identities=0%  Similarity=0.072  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+||||||+.. .+..
T Consensus         5 I~l~G~~GsGKSTvak-~La~   24 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGR-QLAQ   24 (169)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 5554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0018  Score=52.02  Aligned_cols=20  Identities=0%  Similarity=0.064  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||+++. .+..
T Consensus        42 ~lLVG~~GvGKTalv~-~la~   61 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAE-GLAW   61 (268)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             cEEECCCCCcHHHHHH-HHHH
Confidence            9999999999999997 6655

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0017  Score=47.86  Aligned_cols=20  Identities=5%  Similarity=0.021  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+|||||+. .+..
T Consensus         4 v~ItG~~GtGKTtl~~-~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIH-KASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999996 6554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0018  Score=48.85  Aligned_cols=20  Identities=5%  Similarity=0.210  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||++ ++..
T Consensus         4 Ivl~GpsG~GK~tl~~-~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLK-KLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6655

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0021  Score=50.84  Aligned_cols=20  Identities=10%  Similarity=0.032  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        32 vaIvG~sGsGKSTLl~-ll~g   51 (241)
T d2pmka1          32 IGIVGRSGSGKSTLTK-LIQR   51 (241)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            9999999999999995 5554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.002  Score=48.14  Aligned_cols=21  Identities=0%  Similarity=-0.074  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+++|.+||||||+.. ++..
T Consensus        16 liil~G~pGsGKST~a~-~l~~   36 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQ-EHLV   36 (172)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTG
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            39999999999999996 6654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.57  E-value=0.0019  Score=47.98  Aligned_cols=22  Identities=9%  Similarity=-0.002  Sum_probs=17.1

Q ss_pred             EEE-EEEcCCCCchhhhchhhhcc
Q psy5810          52 VFF-IVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki-~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|| +|.|.+||||||+++ .+..
T Consensus         1 mkiivi~G~~GsGKTT~~~-~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLA-KVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHH-HHHH
T ss_pred             CeEEEEECCCCCCHHHHHH-HHHH
Confidence            464 567999999999996 5543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0024  Score=48.12  Aligned_cols=22  Identities=5%  Similarity=0.046  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+|++||||||+.. +++.
T Consensus         2 ~iI~i~GppGSGKsT~a~-~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCA-RIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            579999999999999996 5554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0083  Score=48.26  Aligned_cols=23  Identities=9%  Similarity=0.092  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhccc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      .-|.|+|+.++|||+|+| ++.+.
T Consensus        33 ~vvsi~G~~~sGKS~llN-~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMN-KLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHH-HHTTC
T ss_pred             EEEEEECCCCCCHHHHHH-HHcCC
Confidence            349999999999999999 77764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.52  E-value=0.0025  Score=50.81  Aligned_cols=20  Identities=5%  Similarity=0.072  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        44 iaivG~sGsGKSTLl~-ll~g   63 (253)
T d3b60a1          44 VALVGRSGSGKSTIAS-LITR   63 (253)
T ss_dssp             EEEEECTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            9999999999999996 5554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.47  E-value=0.0027  Score=50.22  Aligned_cols=20  Identities=5%  Similarity=-0.019  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        31 vaivG~sGsGKSTLl~-ll~g   50 (242)
T d1mv5a_          31 IAFAGPSGGGKSTIFS-LLER   50 (242)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 5554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0028  Score=50.38  Aligned_cols=20  Identities=0%  Similarity=-0.021  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        43 vaivG~sGsGKSTLl~-li~g   62 (251)
T d1jj7a_          43 TALVGPNGSGKSTVAA-LLQN   62 (251)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            9999999999999996 5544

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.38  E-value=0.0027  Score=46.89  Aligned_cols=19  Identities=5%  Similarity=-0.089  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      |+|.|.+||||||+++ ++.
T Consensus         4 I~i~G~~GsGKsT~~~-~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQ-LAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHH-HHH
Confidence            7888999999999996 554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.38  E-value=0.003  Score=50.38  Aligned_cols=20  Identities=5%  Similarity=-0.086  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        47 vaivG~sGsGKSTLl~-ll~g   66 (255)
T d2hyda1          47 VAFVGMSGGGKSTLIN-LIPR   66 (255)
T ss_dssp             EEEECSTTSSHHHHHT-TTTT
T ss_pred             EEEECCCCCcHHHHHH-HHHh
Confidence            9999999999999995 4444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.37  E-value=0.0026  Score=47.61  Aligned_cols=20  Identities=0%  Similarity=0.034  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||++ .+..
T Consensus         5 ivl~GpsG~GK~tl~~-~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVR-CLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            7899999999999997 6654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.36  E-value=0.0021  Score=47.34  Aligned_cols=21  Identities=0%  Similarity=-0.047  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +|+++|.+||||||+.. .+..
T Consensus         3 ~IvliG~~G~GKSTig~-~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGR-RLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHH-HHHH
T ss_pred             cEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999984 4443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0029  Score=46.32  Aligned_cols=20  Identities=5%  Similarity=0.220  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|.+||||||+.. .+..
T Consensus         9 ivl~G~~GsGKsT~a~-~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVAS-EVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7789999999999996 6654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0029  Score=47.48  Aligned_cols=20  Identities=5%  Similarity=0.223  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++||||+||++ ++..
T Consensus         6 ivl~Gpsg~GK~tl~~-~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKN-TLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6664

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.26  E-value=0.0032  Score=49.41  Aligned_cols=20  Identities=0%  Similarity=0.004  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        34 ~~iiG~sGsGKSTLl~-~i~g   53 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLN-IIGC   53 (230)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCcchhhH-hccC
Confidence            9999999999999995 4444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.25  E-value=0.0033  Score=48.21  Aligned_cols=20  Identities=10%  Similarity=0.119  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|+.|+|||||++ .+++
T Consensus        30 ~~l~G~NGsGKSTLl~-~i~g   49 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLK-TIST   49 (200)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            8999999999999996 5555

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.018  Score=44.36  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+++|++||||||.+- ++..
T Consensus        13 vi~lvGptGvGKTTTiA-KLAa   33 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSCG-KLAK   33 (213)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            48999999999999985 6654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0032  Score=47.63  Aligned_cols=20  Identities=5%  Similarity=0.150  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||+. ++..
T Consensus         3 Ivl~GPsGsGK~tl~~-~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLK-KLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0033  Score=48.32  Aligned_cols=20  Identities=15%  Similarity=0.311  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++|||||||++ ++..
T Consensus         5 ivi~GPSG~GK~tl~~-~L~~   24 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQ-ALLK   24 (205)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHh
Confidence            7899999999999997 6655

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.0036  Score=50.64  Aligned_cols=20  Identities=10%  Similarity=0.115  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        65 vaivG~nGsGKSTLl~-~i~G   84 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLM-LILG   84 (281)
T ss_dssp             EEEEESTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHhC
Confidence            9999999999999996 5555

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.15  E-value=0.0035  Score=45.94  Aligned_cols=20  Identities=0%  Similarity=0.243  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||+.+ .+..
T Consensus         7 I~l~G~~GsGKSTia~-~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAE-ALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHH-HHHT
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999995 6654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.13  E-value=0.037  Score=42.29  Aligned_cols=55  Identities=11%  Similarity=0.111  Sum_probs=35.8

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCccCHHHHHHH
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKL  179 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~  179 (250)
                      .+|.++++...+ ..++..+.+.+..+.+    .+.|++ +|.|+.|..+ +.+.....+.+
T Consensus       133 ~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~-~~~~~~~~~~~  188 (237)
T d1g3qa_         133 SGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSD-RDIPPEAAEDV  188 (237)
T ss_dssp             TCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCT-TCCCHHHHHHH
T ss_pred             hhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhccccccc-chhhhHHHHhh
Confidence            689999988764 6677777776666643    456654 7889998643 34444444433

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0037  Score=49.06  Aligned_cols=20  Identities=5%  Similarity=0.057  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+.+
T Consensus        29 ~~liGpsGsGKSTLl~-~i~G   48 (232)
T d2awna2          29 VVFVGPSGCGKSTLLR-MIAG   48 (232)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            9999999999999996 4544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.06  E-value=0.0038  Score=45.64  Aligned_cols=20  Identities=10%  Similarity=0.162  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+||||||+.+ .+..
T Consensus         6 I~l~G~~GsGKsTva~-~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVR-CLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            6677999999999996 6655

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.04  E-value=0.0053  Score=46.16  Aligned_cols=26  Identities=4%  Similarity=0.078  Sum_probs=21.2

Q ss_pred             cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          48 TYHHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..+.+.|+|-|..||||||+++ .+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~-~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLN-HFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHH-TTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHH-HHHH
Confidence            4455679999999999999996 6654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.97  E-value=0.0042  Score=45.59  Aligned_cols=20  Identities=5%  Similarity=0.077  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+||||||+.. .+..
T Consensus         3 I~liG~~GsGKsTi~k-~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLAR-ALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999985 5544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.96  E-value=0.0041  Score=45.52  Aligned_cols=22  Identities=5%  Similarity=0.073  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .-|.++|.+||||||+.. .+..
T Consensus         7 ~~I~l~G~~GsGKTTia~-~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIAR-ALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            448899999999999985 5554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.95  E-value=0.0043  Score=48.89  Aligned_cols=20  Identities=5%  Similarity=0.081  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+.+
T Consensus        27 ~~liGpnGaGKSTll~-~i~G   46 (240)
T d2onka1          27 CVLLGPTGAGKSVFLE-LIAG   46 (240)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHHc
Confidence            7899999999999995 5555

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0043  Score=46.81  Aligned_cols=20  Identities=5%  Similarity=0.039  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|++||||||+.. +++.
T Consensus        11 I~i~GppGSGKsT~a~-~La~   30 (196)
T d1ukza_          11 IFVLGGPGAGKGTQCE-KLVK   30 (196)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.86  E-value=0.0047  Score=48.67  Aligned_cols=20  Identities=0%  Similarity=0.031  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|+|||||++ .+.+
T Consensus        35 ~~liGpsGaGKSTLl~-~i~G   54 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLR-MIAG   54 (239)
T ss_dssp             EEEECCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHHc
Confidence            8999999999999996 5554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.82  E-value=0.0041  Score=49.02  Aligned_cols=20  Identities=15%  Similarity=0.315  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|+||+|||+|+. .+.+
T Consensus        35 ilL~GpPGtGKT~la~-~la~   54 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRS-AIFE   54 (273)
T ss_dssp             EEEECCTTSCTHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0051  Score=48.46  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        34 ~~iiG~sGsGKSTLl~-~i~G   53 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIR-CVNL   53 (240)
T ss_dssp             EEEEESTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHcC
Confidence            8999999999999995 4444

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.75  E-value=0.0052  Score=45.35  Aligned_cols=20  Identities=0%  Similarity=0.004  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|.+||||||+.. .+..
T Consensus         5 Iil~G~~GsGKSTia~-~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGR-ELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            7899999999999995 5544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0055  Score=46.68  Aligned_cols=20  Identities=0%  Similarity=0.091  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||+++. .+..
T Consensus        46 ~lLvG~pGVGKTalv~-~LA~   65 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVE-GLAQ   65 (195)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             eEEEecCCcccHHHHH-HHHH
Confidence            9999999999999996 6654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.66  E-value=0.0064  Score=45.28  Aligned_cols=24  Identities=4%  Similarity=0.105  Sum_probs=19.8

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..+-|+|-|.+|||||||.+ ++..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~-~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLAN-QLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHH-HHHH
T ss_pred             CCEEEEEECCCCCCHHHHHH-HHHH
Confidence            45569999999999999997 6654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.63  E-value=0.0055  Score=46.16  Aligned_cols=20  Identities=5%  Similarity=0.032  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|+|+|||||||+.. +++.
T Consensus        11 I~l~G~pGSGKsT~a~-~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCE-KIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8899999999999996 6655

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.57  E-value=0.0042  Score=48.62  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||||++ .+.+
T Consensus        29 ~~liGpsGaGKSTll~-~l~G   48 (229)
T d3d31a2          29 FVILGPTGAGKTLFLE-LIAG   48 (229)
T ss_dssp             EEEECCCTHHHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHhc
Confidence            9999999999999996 5555

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.56  E-value=0.006  Score=48.04  Aligned_cols=20  Identities=5%  Similarity=0.039  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.++|++|+|||||++ .+.+
T Consensus        32 ~~liG~sGaGKSTll~-~i~g   51 (240)
T d1g2912          32 MILLGPSGCGKTTTLR-MIAG   51 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCChHHHHHH-HHhc
Confidence            9999999999999995 5554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.0056  Score=47.63  Aligned_cols=20  Identities=5%  Similarity=0.142  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|+||+||||+++ .+++
T Consensus        38 ~Ll~GPpG~GKTtla~-~la~   57 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAH-VIAH   57 (239)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6665

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.41  E-value=0.0059  Score=47.43  Aligned_cols=20  Identities=10%  Similarity=0.125  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|+||+|||++++ .++.
T Consensus        38 ~L~~GPpGtGKT~lA~-~la~   57 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAH-IIAS   57 (238)
T ss_dssp             EEEESSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHh
Confidence            8999999999999995 6665

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.005  Score=48.27  Aligned_cols=20  Identities=5%  Similarity=0.077  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+.|+|||||++ .+.+
T Consensus        28 ~~iiG~nGaGKSTLl~-~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLA-RMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            9999999999999996 6665

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.25  E-value=0.008  Score=47.31  Aligned_cols=20  Identities=5%  Similarity=0.016  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+.|+|||||++ .+.+
T Consensus        35 ~~liGpnGaGKSTl~~-~i~G   54 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLS-AIAG   54 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHhC
Confidence            9999999999999996 5555

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.22  E-value=0.0084  Score=47.13  Aligned_cols=20  Identities=5%  Similarity=-0.017  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.++|+.|+|||||++ .+.+
T Consensus        31 ~glvG~nGaGKSTLl~-~l~G   50 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLR-IIST   50 (238)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHH-HHhc
Confidence            8899999999999996 5555

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0041  Score=46.44  Aligned_cols=24  Identities=0%  Similarity=-0.061  Sum_probs=19.0

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +-.-|.++|.+||||||+.+ .+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk-~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSM-ALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHHH
Confidence            34458899999999999996 5544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.18  E-value=0.0076  Score=47.19  Aligned_cols=20  Identities=5%  Similarity=-0.115  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+|||||+. ++..
T Consensus        32 i~i~G~~G~GKTsLl~-~~~~   51 (283)
T d2fnaa2          32 TLVLGLRRTGKSSIIK-IGIN   51 (283)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEcCCCCcHHHHHH-HHHH
Confidence            8899999999999996 6654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.014  Score=44.72  Aligned_cols=20  Identities=0%  Similarity=0.046  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .++.
T Consensus        38 lLl~Gp~G~GKttl~~-~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIV-ALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCChhHHHH-HHHH
Confidence            8999999999999996 6766

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.06  E-value=0.23  Score=39.19  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYAWGVKFVE  189 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  189 (250)
                      .++.++++.. .+..+...+...++.+.+.....+.++ .+|.|+.+...    ..+....+++.++.+++.
T Consensus       143 ~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         143 KAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMIH  209 (289)
T ss_dssp             CCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEEE
T ss_pred             ccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hHHHHHHHHHHcCCeEEE
Confidence            3566665543 445666666666665554444445554 47789887432    234456677788877654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.94  E-value=0.01  Score=47.21  Aligned_cols=20  Identities=0%  Similarity=-0.061  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|+|||||++ .+.+
T Consensus        31 ~~iiG~sGsGKSTLl~-~i~G   50 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLR-CINF   50 (258)
T ss_dssp             EEEECCTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHHc
Confidence            9999999999999996 5554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.85  E-value=0.0054  Score=48.36  Aligned_cols=20  Identities=5%  Similarity=0.081  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|++|||||||++ .+.+
T Consensus        34 ~~iiG~sGsGKSTll~-~i~g   53 (242)
T d1oxxk2          34 FGILGPSGAGKTTFMR-IIAG   53 (242)
T ss_dssp             EEEECSCHHHHHHHHH-HHHT
T ss_pred             EEEECCCCCcHHHHHH-HHHc
Confidence            9999999999999995 4544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.021  Score=45.20  Aligned_cols=20  Identities=5%  Similarity=0.135  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||++++ .+..
T Consensus        48 iLL~GppGtGKT~la~-~iA~   67 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAK-AIAG   67 (256)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEeeCCCCCCccHHHH-HHHH
Confidence            9999999999999996 6665

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.77  E-value=0.011  Score=46.83  Aligned_cols=20  Identities=5%  Similarity=0.086  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|+.|+|||||++ .+.+
T Consensus        33 ~~liG~nGaGKSTLl~-~i~G   52 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLIN-VITG   52 (254)
T ss_dssp             EEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEECCCCCcHHHHHH-HHHC
Confidence            8999999999999996 5555

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.55  E-value=0.011  Score=45.14  Aligned_cols=22  Identities=0%  Similarity=0.099  Sum_probs=18.1

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|-|++||||||+.. ++..
T Consensus         4 i~IaIdGp~GsGKgT~ak-~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAK-IIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHH-HHHH
T ss_pred             eEEEEECCCCCCHHHHHH-HHHH
Confidence            458888999999999995 5554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.011  Score=46.02  Aligned_cols=20  Identities=0%  Similarity=-0.077  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .++.
T Consensus        55 lll~GPpG~GKTt~a~-~la~   74 (253)
T d1sxja2          55 AMLYGPPGIGKTTAAH-LVAQ   74 (253)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999995 6766

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.48  E-value=0.011  Score=48.10  Aligned_cols=20  Identities=5%  Similarity=0.101  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+++|+||||||.|.+ .+..
T Consensus        52 iLl~GPpG~GKT~lAk-alA~   71 (309)
T d1ofha_          52 ILMIGPTGVGKTEIAR-RLAK   71 (309)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHhh
Confidence            8999999999999996 6665

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.45  E-value=0.012  Score=45.42  Aligned_cols=20  Identities=0%  Similarity=0.034  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        48 lll~Gp~G~GKTtla~-~iak   67 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAAL-ALAR   67 (231)
T ss_dssp             EEEESCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999995 6665

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.40  E-value=0.013  Score=45.64  Aligned_cols=20  Identities=0%  Similarity=-0.076  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+++. .+..
T Consensus        46 lll~GppGtGKT~l~~-~l~~   65 (276)
T d1fnna2          46 ATLLGRPGTGKTVTLR-KLWE   65 (276)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 6654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.016  Score=44.06  Aligned_cols=22  Identities=9%  Similarity=0.117  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +-|+|-|.+|||||||.+ .+..
T Consensus         3 ~iIgI~G~~gSGKSTla~-~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCA-KIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHHH-HHHH
Confidence            458999999999999996 5544

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.32  E-value=0.14  Score=38.68  Aligned_cols=61  Identities=8%  Similarity=0.015  Sum_probs=34.1

Q ss_pred             CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEE
Q psy5810         119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYAWGVKFV  188 (250)
Q Consensus       119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  188 (250)
                      .+|.+++|.+. +..+.....+.+....+.    +.+ +-+|.|+.+...    .......+.+.++.+++
T Consensus       131 ~ad~v~~v~~~-~~~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~----~~~~~~~i~~~~~~~~~  192 (232)
T d1hyqa_         131 AAQELLLVVNP-EISSITDGLKTKIVAERL----GTKVLGVVVNRITTLG----IEMAKNEIEAILEAKVI  192 (232)
T ss_dssp             HSSEEEEEECS-SHHHHHHHHHHHHHHHHH----TCEEEEEEEEEECTTT----HHHHHHHHHHHTTSCEE
T ss_pred             hhheeeeeccc-cccchhhhhhhhhhhhhc----cccccccccccccccc----ccchhhhHHhhcCCeEE
Confidence            58888888876 345555555544444332    233 457789986322    11223345555677654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.30  E-value=0.013  Score=46.24  Aligned_cols=21  Identities=5%  Similarity=0.170  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|++.|++|+|||+|+. .+.+
T Consensus        42 ~vLL~GppGtGKT~la~-alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAA-KIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECcCCCCHHHHHH-HHhh
Confidence            39999999999999996 6765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.21  E-value=0.015  Score=43.92  Aligned_cols=22  Identities=9%  Similarity=0.231  Sum_probs=18.0

Q ss_pred             EEEEEEcCCCCchhhhchhhhcc
Q psy5810          52 VFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        52 ~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|+|-|..||||||++. .+..
T Consensus         1 mlI~ieG~dGsGKST~~~-~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVE-KLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHH
Confidence            358999999999999996 5543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.06  E-value=0.017  Score=47.47  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|.+|+|||||++ .++.
T Consensus       169 ili~G~tgSGKTT~l~-al~~  188 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIK-SIME  188 (323)
T ss_dssp             EEEEESTTSSHHHHHH-HHGG
T ss_pred             EEEEeeccccchHHHH-HHhh
Confidence            9999999999999997 7776

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.97  E-value=0.02  Score=42.68  Aligned_cols=21  Identities=0%  Similarity=0.120  Sum_probs=17.6

Q ss_pred             EEEEEEEcCCCCchhhhchhhh
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPF   72 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~   72 (250)
                      ++-|+|.|.+||||||+.+ .|
T Consensus         3 p~IIgitG~~gSGKstva~-~l   23 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAA-LL   23 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHH-HH
T ss_pred             CEEEEEECCCCCCHHHHHH-HH
Confidence            3558899999999999996 44

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.67  E-value=0.011  Score=46.48  Aligned_cols=20  Identities=5%  Similarity=-0.094  Sum_probs=16.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.+.|++|+|||+++. .+..
T Consensus        49 l~l~GppGtGKT~l~~-~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAK-FTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHH-HHHH
T ss_pred             EEeECCCCCCHHHHHH-HHHH
Confidence            4556999999999996 6665

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.66  E-value=0.011  Score=49.91  Aligned_cols=20  Identities=0%  Similarity=0.091  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++||++|||||+++. .+..
T Consensus        46 ~llvG~~GvGKtaiv~-~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVE-GLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHH-HHHH
T ss_pred             CeEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 4443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.021  Score=44.34  Aligned_cols=20  Identities=0%  Similarity=0.072  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .++.
T Consensus        36 lll~Gp~G~GKTt~~~-~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCM-ALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHH-THHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999995 6654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.02  Score=43.37  Aligned_cols=20  Identities=5%  Similarity=0.165  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++||||+|+.. ++..
T Consensus         6 I~I~GppGSGKgT~ak-~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCK-AMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            6777999999999995 5554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.42  E-value=0.022  Score=43.73  Aligned_cols=20  Identities=0%  Similarity=0.009  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .++.
T Consensus        36 lll~Gp~G~GKTtl~~-~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTIL-ALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCChHHHHH-HHHH
Confidence            8999999999999995 6665

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=92.33  E-value=0.021  Score=44.94  Aligned_cols=20  Identities=5%  Similarity=0.094  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|++ .+..
T Consensus        45 iLl~GppGtGKT~la~-aia~   64 (247)
T d1ixza_          45 VLLVGPPGVGKTHLAR-AVAG   64 (247)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEecCCCCChhHHHH-HHHH
Confidence            9999999999999996 6765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.30  E-value=0.023  Score=43.49  Aligned_cols=20  Identities=5%  Similarity=0.016  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+||||++. .+..
T Consensus        39 ~ll~Gp~G~GKTt~a~-~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVH-CLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCchhhHH-HHHH
Confidence            8999999999999995 5654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.10  E-value=0.033  Score=40.68  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhchhhhccc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCSQ   75 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~~   75 (250)
                      -|++-|+-|+|||+|+. .++.+
T Consensus        35 ii~L~G~LGaGKTtfvr-~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTR-GMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHHH
T ss_pred             EEEEecCCCccHHHHHH-HHHhh
Confidence            38889999999999995 67664

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.033  Score=42.74  Aligned_cols=20  Identities=0%  Similarity=0.052  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|-|..||||||+++ .+..
T Consensus         5 I~ieG~dGsGKST~~~-~L~~   24 (241)
T d1p5zb_           5 ISIEGNIAAGKSTFVN-ILKQ   24 (241)
T ss_dssp             EEEECSTTSSHHHHHT-TTGG
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 5554

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.87  E-value=0.029  Score=42.83  Aligned_cols=24  Identities=4%  Similarity=-0.018  Sum_probs=19.1

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +..-|.+.|.+|+|||||.+ .+..
T Consensus        23 kg~vIwltGlsGsGKTTia~-~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAV-ELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHH-HHHH
Confidence            33449999999999999996 5553

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.86  E-value=0.073  Score=40.46  Aligned_cols=20  Identities=5%  Similarity=0.009  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|.. .++.
T Consensus        37 ~li~G~pGsGKT~l~l-q~~~   56 (251)
T d1szpa2          37 TELFGEFRTGKSQLCH-TLAV   56 (251)
T ss_dssp             EEEEESTTSSHHHHHH-HHTT
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            8899999999999997 5654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.83  E-value=0.026  Score=44.57  Aligned_cols=20  Identities=0%  Similarity=0.119  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|++ .+..
T Consensus        41 iLL~GppGtGKT~l~~-ala~   60 (258)
T d1e32a2          41 ILLYGPPGTGKTLIAR-AVAN   60 (258)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             eEEecCCCCCchHHHH-HHHH
Confidence            9999999999999996 6666

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.033  Score=41.44  Aligned_cols=20  Identities=0%  Similarity=-0.014  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|.|++|+|||+|.. .++.
T Consensus        26 ~~i~G~~GsGKT~l~l-~la~   45 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICH-TLAV   45 (242)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            8899999999999997 5654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.75  E-value=0.041  Score=42.34  Aligned_cols=20  Identities=10%  Similarity=0.057  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|.. +|+.
T Consensus        39 ~li~G~pGsGKT~~~l-q~~~   58 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAH-TLAV   58 (254)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.044  Score=41.40  Aligned_cols=21  Identities=0%  Similarity=0.102  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|-|..||||||++. .+..
T Consensus         4 fIviEG~dGsGKsT~~~-~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARN-VVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            38888999999999996 5543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.63  E-value=0.043  Score=46.91  Aligned_cols=20  Identities=5%  Similarity=0.101  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++||++|||||-|.. ++..
T Consensus        52 ILliGPTGvGKTlLAr-~LAk   71 (443)
T d1g41a_          52 ILMIGPTGVGKTEIAR-RLAK   71 (443)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999995 6544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=0.036  Score=43.89  Aligned_cols=20  Identities=5%  Similarity=0.099  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||+|++ .+++
T Consensus        44 iLL~Gp~GtGKT~l~~-ala~   63 (265)
T d1r7ra3          44 VLFYGPPGCGKTLLAK-AIAN   63 (265)
T ss_dssp             EEEBCCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcchhHHH-HHHH
Confidence            9999999999999996 6766

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.21  E-value=0.037  Score=45.12  Aligned_cols=19  Identities=11%  Similarity=0.218  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      |+++|++|+|||+|+. ++.
T Consensus        31 vLl~G~pG~GKT~lar-~~~   49 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVR-ALA   49 (333)
T ss_dssp             EEEECCGGGCTTHHHH-HHH
T ss_pred             EEEECCCCccHHHHHH-HHH
Confidence            9999999999999995 654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.88  E-value=0.059  Score=40.03  Aligned_cols=20  Identities=5%  Similarity=0.115  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+||||+.. .+..
T Consensus        17 vl~~G~sG~GKStlal-~l~~   36 (176)
T d1kkma_          17 VLITGDSGVGKSETAL-ELVQ   36 (176)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            9999999999999996 5555

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.072  Score=42.18  Aligned_cols=38  Identities=11%  Similarity=0.076  Sum_probs=25.7

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ   99 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~   99 (250)
                      +.|.|++++|||+|.. .++.....    .+   ..+.++||-+.+
T Consensus        57 tei~G~~gsGKTtl~l-~~~~~~q~----~g---~~~vyidtE~~~   94 (263)
T d1u94a1          57 VEIYGPESSGKTTLTL-QVIAAAQR----EG---KTCAFIDAEHAL   94 (263)
T ss_dssp             EEEECSTTSSHHHHHH-HHHHHHHH----TT---CCEEEEESSCCC
T ss_pred             EEEecCCCcHHHHHHH-HHHHHHHc----CC---CEEEEEcccccc
Confidence            7899999999999996 55542111    11   134568998765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.81  E-value=0.056  Score=44.92  Aligned_cols=20  Identities=5%  Similarity=0.182  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||-|.. ++..
T Consensus        71 iLfiGPTGvGKTElAk-~LA~   90 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQ-TLAK   90 (364)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             eeeeCCCCccHHHHHH-HHHh
Confidence            9999999999999995 6654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.013  Score=43.35  Aligned_cols=18  Identities=6%  Similarity=0.106  Sum_probs=15.6

Q ss_pred             EEEEcCCCCchhhhchhhh
Q psy5810          54 FIVHSDTNHTQRCLTSMPF   72 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~   72 (250)
                      .+|+|+.|+|||||+. .+
T Consensus        27 tvi~G~NGsGKStil~-Ai   44 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMA-AF   44 (222)
T ss_dssp             HHHHSCCSHHHHHHHH-HH
T ss_pred             EEEECCCCCCHHHHHH-HH
Confidence            5788999999999997 54

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.40  E-value=0.066  Score=39.79  Aligned_cols=20  Identities=0%  Similarity=-0.006  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||++.. .+..
T Consensus        18 vli~G~sG~GKS~lal-~l~~   37 (177)
T d1knxa2          18 VLLTGRSGIGKSECAL-DLIN   37 (177)
T ss_dssp             EEEEESSSSSHHHHHH-HHHT
T ss_pred             EEEEcCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.40  E-value=0.064  Score=41.13  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|+. +++.
T Consensus        29 ~li~G~pGsGKT~l~~-qia~   48 (242)
T d1tf7a2          29 ILATGATGTGKTLLVS-RFVE   48 (242)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6655

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.36  E-value=0.057  Score=43.02  Aligned_cols=16  Identities=0%  Similarity=-0.006  Sum_probs=14.7

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      -+++|+.|+|||+++.
T Consensus        27 nvlvG~NgsGKS~iL~   42 (308)
T d1e69a_          27 TAIVGPNGSGKSNIID   42 (308)
T ss_dssp             EEEECCTTTCSTHHHH
T ss_pred             EEEECCCCCcHHHHHH
Confidence            4899999999999996

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.074  Score=43.13  Aligned_cols=23  Identities=0%  Similarity=-0.094  Sum_probs=18.5

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      ..+-|.|.|.+|||||||.+ .+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~-~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTAR-VLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHH-HHH
T ss_pred             CCEEEEEeCCCCCCCcHHHH-HHH
Confidence            34559999999999999985 443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.27  E-value=0.059  Score=40.99  Aligned_cols=21  Identities=0%  Similarity=0.102  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+|-|..||||||++. .+..
T Consensus         5 lI~ieG~dGsGKsT~~~-~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSR-KLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            37888999999999985 5443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.17  E-value=0.06  Score=42.78  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      -|+|.|..|+|||||+. .+.+
T Consensus        46 ~v~I~GmgGiGKTtLA~-~v~~   66 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIAS-QALS   66 (277)
T ss_dssp             EEEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHH-HHHH
Confidence            38899999999999996 5443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.09  E-value=0.068  Score=40.66  Aligned_cols=20  Identities=5%  Similarity=-0.044  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|.. .++.
T Consensus        37 ~~i~G~~G~GKT~~~l-~~a~   56 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMH-QSCV   56 (258)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            8999999999999997 6654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.075  Score=40.20  Aligned_cols=19  Identities=5%  Similarity=0.207  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      |+|.|..||||||+.+ .|.
T Consensus         6 IgitG~igSGKStv~~-~l~   24 (208)
T d1vhta_           6 VALTGGIGSGKSTVAN-AFA   24 (208)
T ss_dssp             EEEECCTTSCHHHHHH-HHH
T ss_pred             EEEECCCcCCHHHHHH-HHH
Confidence            7899999999999996 553

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.88  E-value=0.058  Score=43.30  Aligned_cols=19  Identities=11%  Similarity=0.144  Sum_probs=13.8

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      |+|.|.+||||||+.+ .+.
T Consensus         7 IgIaG~SGSGKTTva~-~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKH-TFD   25 (288)
T ss_dssp             EEEESCC---CCTHHH-HHH
T ss_pred             EEEECCCCCcHHHHHH-HHH
Confidence            9999999999999996 543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=88.74  E-value=0.079  Score=39.94  Aligned_cols=20  Identities=5%  Similarity=0.109  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCchhhhchhhhc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~   73 (250)
                      -|+|.|..||||||+.+ .|.
T Consensus         4 iIgITG~igSGKStv~~-~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIAN-LFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHH-HHH
Confidence            38899999999999996 443

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.24  E-value=0.087  Score=38.79  Aligned_cols=20  Identities=5%  Similarity=0.092  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |++.|++|+|||++.- .+..
T Consensus        18 vli~G~sg~GKS~la~-~l~~   37 (169)
T d1ko7a2          18 VLITGDSGIGKSETAL-ELIK   37 (169)
T ss_dssp             EEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCCHHHHHH-HHHH
Confidence            9999999999999986 5554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.00  E-value=0.088  Score=42.69  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++++|++|||||.|.. .+..
T Consensus        55 ~lf~Gp~GvGKT~lak-~la~   74 (315)
T d1r6bx3          55 FLFAGPTGVGKTEVTV-QLSK   74 (315)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCcchhHHHHH-HHHh
Confidence            8899999999999995 6554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.091  Score=40.18  Aligned_cols=20  Identities=10%  Similarity=0.197  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|.|++|+|||+|.. .++.
T Consensus        40 ~~i~G~~GsGKT~lal-q~~~   59 (258)
T d1v5wa_          40 TEAFGEFRTGKTQLSH-TLCV   59 (258)
T ss_dssp             EEEECCTTCTHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8999999999999996 6664

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.098  Score=40.07  Aligned_cols=21  Identities=0%  Similarity=0.023  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|=|..||||||+++ .+..
T Consensus         4 ~IviEG~~GsGKST~~~-~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVK-LLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCcHHHHHH-HHHH
Confidence            38999999999999996 5554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.75  E-value=0.085  Score=40.24  Aligned_cols=20  Identities=5%  Similarity=0.046  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +.|.|++|+|||-|++ .+++
T Consensus        39 l~l~G~~G~GKTHLl~-A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQ-AAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            7899999999999996 7766

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.74  E-value=0.094  Score=39.56  Aligned_cols=19  Identities=11%  Similarity=0.203  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      ++|.|++|+|||+|.. .++
T Consensus        29 ~~I~G~~G~GKT~la~-~~~   47 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSI-QFL   47 (242)
T ss_dssp             EEEEESTTSSHHHHHH-HHH
T ss_pred             EEEEeCCCCCHHHHHH-HHH
Confidence            8899999999999986 554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.74  E-value=0.084  Score=43.78  Aligned_cols=20  Identities=5%  Similarity=0.245  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|+||+|||+|.. .+++
T Consensus       157 ~~~~g~~~~gk~~~~~-~~~~  176 (362)
T d1svma_         157 WLFKGPIDSGKTTLAA-ALLE  176 (362)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            9999999999999996 6655

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.90  E-value=0.14  Score=40.85  Aligned_cols=20  Identities=5%  Similarity=0.102  Sum_probs=17.1

Q ss_pred             cEEEEEEEcCCCCchhhhch
Q psy5810          50 HHVFFIVHSDTNHTQRCLTS   69 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~   69 (250)
                      ..+-|.|-|.+|||||||..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~   45 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSI   45 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHH
Confidence            34669999999999999985

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.71  E-value=0.1  Score=43.11  Aligned_cols=18  Identities=0%  Similarity=-0.003  Sum_probs=15.6

Q ss_pred             EEEEcCCCCchhhhchhhh
Q psy5810          54 FIVHSDTNHTQRCLTSMPF   72 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~   72 (250)
                      -+|+|+.|+|||+++. .+
T Consensus        28 ~~i~G~NGsGKS~ile-Ai   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMD-AI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHH-HH
T ss_pred             EEEECCCCCCHHHHHH-HH
Confidence            4788999999999997 54

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=86.43  E-value=0.12  Score=40.40  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=35.0

Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEe--eCCCccC----CC-cc--CHHHHHHHHHHhCCeEEEEec
Q psy5810         122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA--NKADLER----RR-QV--THSDGKKLAYAWGVKFVETSV  192 (250)
Q Consensus       122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~--nK~Dl~~----~~-~v--~~~~~~~~~~~~~~~~~evSa  192 (250)
                      ..+.+++.......+.+...+......   .++.+|+|=  +..+-..    .+ .+  -..+...+|++++++++-++-
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q  195 (277)
T d1cr2a_         119 DTFHLYDSFAEAETDRLLAKLAYMRSG---LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH  195 (277)
T ss_dssp             SCEEEECCC-CCCHHHHHHHHHHHHHT---TCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             ceeeeeccccchhHHHHHHHhhhhhhc---cCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecc
Confidence            445667666555566665555554332   233444432  2222111    01 11  123467788899999888876


Q ss_pred             CCC
Q psy5810         193 GLV  195 (250)
Q Consensus       193 ~~~  195 (250)
                      .+.
T Consensus       196 ~~r  198 (277)
T d1cr2a_         196 LKN  198 (277)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.14  Score=38.75  Aligned_cols=20  Identities=5%  Similarity=0.154  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        27 lLl~Gp~G~GKtt~a~-~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIY-ALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            8999999999999995 5544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.11  E-value=0.14  Score=38.94  Aligned_cols=21  Identities=0%  Similarity=0.053  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .|+|-|..||||||++. .+..
T Consensus         5 ~I~iEG~DGsGKST~~~-~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCN-ILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHH
T ss_pred             EEEEECCCCCcHHHHHH-HHHH
Confidence            48999999999999995 5543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.11  E-value=0.13  Score=41.10  Aligned_cols=16  Identities=0%  Similarity=0.181  Sum_probs=14.0

Q ss_pred             EEEEcCCCCchhhhch
Q psy5810          54 FIVHSDTNHTQRCLTS   69 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~   69 (250)
                      ++|.|.+|+|||+.+-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            8899999999998663

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.03  E-value=0.11  Score=40.99  Aligned_cols=15  Identities=7%  Similarity=0.107  Sum_probs=13.4

Q ss_pred             EEEEcCCCCchhhhc
Q psy5810          54 FIVHSDTNHTQRCLT   68 (250)
Q Consensus        54 i~iiG~~~vGKSsLi   68 (250)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            789999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.97  E-value=0.15  Score=41.67  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=20.2

Q ss_pred             cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810          50 HHVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        50 ~~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ..++|+|=|.-||||||+++ .+..
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~-~L~~   27 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAE-EFLH   27 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHH-HHHH
T ss_pred             cceEEEEECCCCCCHHHHHH-HHHH
Confidence            35679999999999999996 6654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=85.62  E-value=0.13  Score=41.92  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|+||+|||.|.. .+..
T Consensus       126 ~l~~G~pG~GKT~la~-ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVH-ALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHH-HHHH
T ss_pred             EEEECCCCccHHHHHH-HHHH
Confidence            4557999999999996 6766

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.15  Score=39.30  Aligned_cols=20  Identities=0%  Similarity=0.172  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      +++.|++|+|||+++. .+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~-~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIAR-LLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCcHHHHHH-HHHH
Confidence            7889999999999995 5543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=85.30  E-value=0.2  Score=40.85  Aligned_cols=23  Identities=9%  Similarity=-0.086  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|=|.-||||||+++ .+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~-~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGR-VMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHH-HHHS
T ss_pred             eEEEEEECCccCCHHHHHH-HHHH
Confidence            4679999999999999996 6665

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=85.23  E-value=0.17  Score=41.25  Aligned_cols=23  Identities=4%  Similarity=0.002  Sum_probs=19.4

Q ss_pred             EEEEEEEcCCCCchhhhchhhhcc
Q psy5810          51 HVFFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        51 ~~ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      .++|+|=|.-||||||+++ .+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~-~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQ-LLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHH-HHTC
T ss_pred             ceEEEEECCcCCCHHHHHH-HHHH
Confidence            3569999999999999996 6654

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.75  E-value=0.98  Score=33.15  Aligned_cols=20  Identities=5%  Similarity=0.112  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|...+|||.+.. ++..
T Consensus         2 iLVtGGarSGKS~~AE-~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAE-ALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHH-HHHC
T ss_pred             EEEECCCCccHHHHHH-HHHh
Confidence            6899999999999997 5654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=84.67  E-value=0.15  Score=42.76  Aligned_cols=20  Identities=10%  Similarity=-0.026  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|++|+||||.++ .++.
T Consensus       161 iLvtGpTGSGKSTTl~-~~l~  180 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLY-AGLQ  180 (401)
T ss_dssp             EEEECSTTSCHHHHHH-HHHH
T ss_pred             EEEEcCCCCCccHHHH-HHhh
Confidence            9999999999999997 6665

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.17  Score=39.35  Aligned_cols=19  Identities=11%  Similarity=-0.034  Sum_probs=16.3

Q ss_pred             EEEEcCCCCchhhhchhhhc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFC   73 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~   73 (250)
                      .+|.|++|+|||+|+. .++
T Consensus        32 ~~i~G~~G~GKS~l~l-~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLAL-QLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHH-HHH
T ss_pred             EEEEeCCCCCHHHHHH-HHH
Confidence            7799999999999995 544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=0.24  Score=41.30  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      ++|+|.+|+|||+++. .++.
T Consensus        53 ~~I~G~tGsGKT~~l~-~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLR-ELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHH-HHHH
T ss_pred             EEEEeCCCCcHHHHHH-HHHH
Confidence            9999999999999985 4443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=81.87  E-value=0.27  Score=39.23  Aligned_cols=21  Identities=5%  Similarity=-0.013  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCchhhhchhhhcc
Q psy5810          53 FFIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        53 ki~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+.|+|++|+|||+|+. .+..
T Consensus        45 r~~I~g~~g~GKT~l~~-~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQ-NIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHH-HHHH
T ss_pred             eeeEeCCCCCCHHHHHH-HHHH
Confidence            39999999999999996 5544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.35  E-value=0.29  Score=38.59  Aligned_cols=38  Identities=5%  Similarity=0.050  Sum_probs=24.3

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ   99 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~   99 (250)
                      ..+.|++++|||+|.. .++....    ..+   ..+.+.||-+.+
T Consensus        63 ~e~~G~~~~GKT~l~l-~~~~~~q----~~g---~~~vyIDtE~~~  100 (269)
T d1mo6a1          63 IEIYGPESSGKTTVAL-HAVANAQ----AAG---GVAAFIDAEHAL  100 (269)
T ss_dssp             EEEECSSSSSHHHHHH-HHHHHHH----HTT---CEEEEEESSCCC
T ss_pred             EEEecCCCcHHHHHHH-HHHHHHh----cCC---CEEEEEECCccC
Confidence            7899999999999985 4443111    111   134456988754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.05  E-value=0.3  Score=37.19  Aligned_cols=20  Identities=5%  Similarity=-0.011  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhchhhhcc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCS   74 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~   74 (250)
                      |+|.|..||||||+.+ .|..
T Consensus         4 IgiTG~igSGKsTva~-~l~e   23 (241)
T d1deka_           4 IFLSGVKRSGKDTTAD-FIMS   23 (241)
T ss_dssp             EEEECCTTSSHHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHH
Confidence            8899999999999996 5544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.64  E-value=0.54  Score=36.92  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=25.5

Q ss_pred             EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc
Q psy5810          54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ   99 (250)
Q Consensus        54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~   99 (250)
                      ..+.|++++|||+|.. .++....    ..+   ..+.++||-+..
T Consensus        60 tei~G~~~sGKT~l~l-~~~~~aq----k~g---~~v~yiDtE~~~   97 (268)
T d1xp8a1          60 TEIYGPESGGKTTLAL-AIVAQAQ----KAG---GTCAFIDAEHAL   97 (268)
T ss_dssp             EEEEESTTSSHHHHHH-HHHHHHH----HTT---CCEEEEESSCCC
T ss_pred             EEEecCCccchHHHHH-HHHHHHH----hCC---CEEEEEECCccC
Confidence            7899999999999996 5554211    111   234568988765